Citrus Sinensis ID: 001392
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | 2.2.26 [Sep-21-2011] | |||||||
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.826 | 0.777 | 0.348 | 1e-151 | |
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.784 | 0.728 | 0.358 | 1e-151 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.784 | 0.728 | 0.357 | 1e-150 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.786 | 0.730 | 0.349 | 1e-147 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.806 | 0.763 | 0.278 | 2e-97 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.796 | 0.834 | 0.246 | 2e-47 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.808 | 0.817 | 0.231 | 3e-35 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.413 | 0.430 | 0.217 | 3e-09 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.413 | 0.430 | 0.217 | 3e-09 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.413 | 0.430 | 0.217 | 3e-09 |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust.
Identities = 338/971 (34%), Positives = 533/971 (54%), Gaps = 72/971 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 534
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNSISVTTSYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ + NL+AANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833
L+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVG 800
Query: 834 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 893
+ FD + C LL A+ H A +++++ + E R K
Sbjct: 801 DKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEEK-------------EMRTKQ 845
Query: 894 EEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 953
E++K+ L +K E E+K LR+ EE +++ EQ R+ R S + E +K+
Sbjct: 846 EQEKEVLRQKLLKEQEEKHLREIEEQ-KKLLEQ-RAQYLEKTRNLLSFTGEMETPKEKKQ 903
Query: 954 RRKGGKRRKKD 964
R GG+R KK+
Sbjct: 904 RGGGGRRSKKN 914
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 330/920 (35%), Positives = 517/920 (56%), Gaps = 66/920 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSS--FVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 534
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVG 800
Query: 834 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAALA 886
+ FD T C LL A+ H A +++++ R Q +E RQ L
Sbjct: 801 DKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLK 858
Query: 887 EE--ARRKAEEQKKYLLEKR 904
E+ R + +E++K LLE+R
Sbjct: 859 EQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust.
Identities = 329/920 (35%), Positives = 516/920 (56%), Gaps = 66/920 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 534
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVG 800
Query: 834 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAALA 886
+ FD + C LL A+ H A +++++ R Q +E RQ L
Sbjct: 801 DKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLK 858
Query: 887 EE--ARRKAEEQKKYLLEKR 904
E+ R + +E++K LLE+R
Sbjct: 859 EQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust.
Identities = 324/926 (34%), Positives = 509/926 (54%), Gaps = 70/926 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARL 534
L LD R + + H E +N VT +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTTYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ + NLYAANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833
L+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVG 800
Query: 834 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 893
+ FD + C LL A+ H A +++++ + E R K
Sbjct: 801 DKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEEK-------------ELRAKQ 845
Query: 894 EEQKKYLLEKRKLEDEQKRLRQQEEH 919
E++K+ L +K E E+KRL++ EE
Sbjct: 846 EQEKEILRQKLIKEQEEKRLKEIEEQ 871
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 260/935 (27%), Positives = 482/935 (51%), Gaps = 57/935 (6%)
Query: 4 VYIPVQNSEEE--VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++S E+ + + +LP D ++L IL+AE+A L W+ +A EY++Q +V+ F
Sbjct: 14 IAIPLKDSHEDEVIEINCSELP-DGEEVLQILEAEEAKLSYWIEVALEYYRQDRVDLFMM 72
Query: 62 ILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
ILE S EY V+ +++ L+ L Y+ G E + +K + F AT +N A
Sbjct: 73 ILESAGSRAGLEYEG-VKQDQMRALDILAAYWMTQGYREKAKDKKSDFFSKATVLFNTAD 131
Query: 122 RIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+I M+E S + L + + E A F V++ + NV L+G+A + FN+
Sbjct: 132 KIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIAFNKK 191
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA++++P NV A+
Sbjct: 192 DYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYNVSAMCG 251
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L ++ L + ++ + R++ + +AL +LANHFFF + L A
Sbjct: 252 LGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKEIERAWTLAWHAAT 311
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ K+ ++Y + R H++G ++ A YY + + N H +YGLGQ+ +
Sbjct: 312 YNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEH--TLAHYGLGQMYIHRN 369
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EKAQELLRKAAKIDP 407
+ A+ F+ V + P+N +T+K LG +Y VQL +K +++L K ++
Sbjct: 370 EIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVEN 429
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFES 466
D +A IDL +LL ++D +L+ ++ A LL P E+LNN+G ++ ++E
Sbjct: 430 DDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYEK 489
Query: 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526
A FK A L+ + T D + +L+ R + +H+ +T
Sbjct: 490 AEHHFKRA------KERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------LT 527
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+ + S + + +
Sbjct: 528 IRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQGV 587
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGNWNYFAAL 643
+ + P +++G+L ++W+ A++ F S + K D Y+ ++LGN +F L
Sbjct: 588 QFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGN-VWFEQL 646
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
N R + E ++++A ++Y + + N+YAANG G VLA K ++ ++D+F+QV+E
Sbjct: 647 LNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRE 706
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ S + DVW+N+AHV + + A++MY + ++KF D+ + YLA+ +Y A
Sbjct: 707 STS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRA 761
Query: 764 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 823
+ K++L A+ N L+F+ + ++K + L+ + T+++V + + +L+ A
Sbjct: 762 NMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSEQVTAAIDDLKFAD 821
Query: 824 RVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHREAAEREEQQNRQRQEA 879
++F ++S + + T + CK LL AK AA+ ++++ R+ E
Sbjct: 822 KIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEERRLMEK 881
Query: 880 ARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 914
+ +A + + E + K EK+KLED K LR
Sbjct: 882 QEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 246/999 (24%), Positives = 435/999 (43%), Gaps = 132/999 (13%)
Query: 4 VYIPVQNSEEE-VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+ +P+ E++ V + LP DA+++ +IL EQAP + W A EY+ +G EQ I
Sbjct: 14 IEVPLLGQEDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILI 73
Query: 63 LEEGSSPEIDEYYADVRYERIAILNA-LGVYYTYLGKIETKQRE---KEEHFILATQYYN 118
L+ G D E + ILNA + Y + + +++ ++E Y
Sbjct: 74 LKSGLETLKDS-------ESLCILNANIAAIYLSMAREAMLKKDTDLRDEQLRNVRTYLE 126
Query: 119 KASRIDMHEPSTWVGKG--QLLLA---KGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173
A+ ID + G ++LL K +E A+ F VL+ N+ LG+A + +
Sbjct: 127 AANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSGGNILGFLGKARILY 186
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN--V 231
+G Y +L+ Y+RAL +P R+GIGLC + L A A+ R QLDP+N V
Sbjct: 187 AKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLDPKNTVV 246
Query: 232 EALVALAVMDL---QANEAAGIR---KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
+ + L DL N + ++ K ++ +QRAF+ +A + L + + +
Sbjct: 247 DTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYE 306
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+L E + + + YY + R+YH G+ EKA Y + K + H +
Sbjct: 307 GCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKA-KAADDRH--LLSS 363
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAA 403
G+GQ+Q+ D SA FE++ E E L LG ++ + + KA+ LL +A
Sbjct: 364 VGIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAF 423
Query: 404 KID-----PR--DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
+ PR D+ +I L DT +L A L+ A V E+LNNI V
Sbjct: 424 NLVGSSKLPRVVDSDLYITQARLWEKEDTKKSLGFLTRALDFLESAHMSVGPELLNNIAV 483
Query: 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516
+ + G AH G+ I K K+ + DA+ + D
Sbjct: 484 LQYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLLLD------------ 517
Query: 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576
+NLAR E++ +T AS Y IL K+ ++DA +R + + N +
Sbjct: 518 ------------YNLARCEEELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNEE 565
Query: 577 LSIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630
E+ ++ L+V + LS +++ + +T R D D Y+
Sbjct: 566 TFKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTLRHWHD-----DIYS 620
Query: 631 TLSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
+ LGN A + N++ K + ++ KA + Y + I N +AA G ++LA
Sbjct: 621 LVQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDPKNAHAAQGIAIILA 679
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746
+ QF + + ++V+EA + + IN+ + F+ A+++++
Sbjct: 680 QNRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSRAIEVFETVYSSTGE 733
Query: 747 NTDAQILLYLARTHYE---AEQWQDCKKSLLRAIHLA----PSNYTLRFDAGVAMQKFSA 799
+ +L L R + + D K +R LA P N +L F+ VA +F
Sbjct: 734 SDTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPSLLFN--VAFVQFQL 791
Query: 800 STLQKTR----RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 855
L + + RT +++ + +L+ ++ F+ L + H Y
Sbjct: 792 CELIRQKPENSRTVEDLNFAMQQLDASIETFTKLVSVE--------------HPPYSPTS 837
Query: 856 LDA-AKIHREAAEREEQQNRQRQEAARQ--AALAEEAR--RKAEEQKKYLLEKRKLEDEQ 910
++ AK+ + +R+ ++ Q Q + AA E+AR R+ E+ ++ E+ L+++Q
Sbjct: 838 IEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEKQ 897
Query: 911 KRLRQQEEHFQRVKE---QWRSSTPASKRRERSENDDDE 946
+R RQ +E Q+++E +WR S + + S +DD+E
Sbjct: 898 ERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 247/1067 (23%), Positives = 445/1067 (41%), Gaps = 187/1067 (17%)
Query: 6 IPVQNSEEEVRVALDQ-LPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILE 64
IP++ SEE V + L+ LP D +D+ +L E + + WL IA Y GK + +++E
Sbjct: 21 IPLKASEELVGIDLETDLPDDPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIE 80
Query: 65 EGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124
+D + ER ++ L + L K ++ E +EH + + N I
Sbjct: 81 MA----LDVFQNS---ERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAEL-NLKDAIG 132
Query: 125 MHEPSTWVGKG----QLLLAKGEVEQA---SSAFKIVLEAD--------RDNVPALLGQA 169
+P TW+G +L +G ++A S F + A+ + N LL +A
Sbjct: 133 F-DP-TWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRA 190
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ + + Y SL+ ++ L ++P R+GIGLC ++L A +++QRALQL+P+
Sbjct: 191 KLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPK 250
Query: 230 NVEALVALAVMDLQ------ANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
N A + + + + + N+ K + + F + + L L +++F
Sbjct: 251 NTSASILVLLGEFRESFTNSTNDKTFKEAFTKALSDLNNIFSENQHNPVLLTLLQTYYYF 310
Query: 281 TGQHFLVEQLTETALAVTNHGPTK----------SHSYYNLARSYHSKGDYEKAGLYYMA 330
G + +T L + +H K S S + R++++ GDY K+ + +
Sbjct: 311 KGDY-------QTVLDIYHHRILKMSPMIAKIVLSESSFWCGRAHYALGDYRKSFIMFQE 363
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV--- 387
S+K K + + GLGQ Q+K ++ FE + + E LG +Y
Sbjct: 364 SLK---KNEDNLLAKLGLGQTQIKNNLLEESIITFENLYKTNESLQELNYILGMLYAGKA 420
Query: 388 -------------QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434
Q EKA + L + K+ + L+ S + +KT
Sbjct: 421 FDAKTAKNTSAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQNQYKT 480
Query: 435 ARTLLKKAGE-------EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487
+ L KA E E+P+EVLNN+ HF G+F A FK A
Sbjct: 481 SLDYLSKALEEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA------------- 527
Query: 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547
K V D S+ +T+ +N+AR E+ +D + +
Sbjct: 528 -KAKVSDKDESV------------------------NITLEYNIARTNEK-NDCEKSESI 561
Query: 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLGDLEL 604
Y + + Y+ A +R + A++ ++ +S E+ N+ L +N S G L
Sbjct: 562 YSQVTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG-WYL 619
Query: 605 KNDDWVKAKETFRAASDAT----DGKDSYATLSLGNWNYFAA-----LRNEKRAPKLEAT 655
KN K E + T + D+YA +SL N A RN K K + +
Sbjct: 620 KNSKERKNNEKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEKSKHS 679
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+L KA +LY +V+ N++AA G ++ AE + + ++ +V+++ D
Sbjct: 680 YL-KAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE------D 732
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY-------EAEQWQ 767
V +NLAH Y + A++ Y+ L+KF T IL L R Y +Q
Sbjct: 733 VQLNLAHCYLEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWYARAIKERSVNFYQ 792
Query: 768 DCKKSLLRAIHL-----APSNYTLRFDAGVAMQKFS-ASTLQKTR---RTADEVRSTVAE 818
++ A+ L + S + +A+ F A TL+++ RT +++ ++
Sbjct: 793 KALENAKTALDLFVKESSKSKFIHSVKFNIALLHFQIAETLRRSNPKFRTVQQIKDSLEG 852
Query: 819 LENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREE---QQNRQ 875
L+ + +F L+ ++ ++++ ++ + + +A + R E+EE +Q+ +
Sbjct: 853 LKEGLELFRELNDLKEFNM--IPKEELEQRIQLGETTMKSA-LERSLNEQEEFEKEQSAK 909
Query: 876 RQEAAR---QAALAEEARRKAEEQKKYL-LEK-----RKLEDEQKRLRQQEEHF------ 920
EA + + L E+ K EE+ + L LEK RKL+DE ++L Q+ E
Sbjct: 910 IDEARKILEENELKEQGWMKQEEEARRLKLEKQAEEYRKLQDEAQKLIQEREAMAISEHN 969
Query: 921 -------QRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
++ P KR+ ++ + E +RRK K+
Sbjct: 970 VKDDSDLSDKDNEYDEEKPRQKRKRSTKTKNS----GESKRRKAAKK 1012
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | ||||||
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.997 | 0.994 | 0.817 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.991 | 0.991 | 0.806 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.983 | 0.985 | 0.811 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.981 | 0.994 | 0.809 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.966 | 0.996 | 0.834 | 0.0 | |
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.973 | 0.994 | 0.803 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.959 | 0.994 | 0.791 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.981 | 0.978 | 0.756 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.956 | 0.983 | 0.734 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.960 | 0.937 | 0.707 | 0.0 |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1800 bits (4661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1093 (81%), Positives = 991/1093 (90%), Gaps = 8/1093 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHE STWVGKGQLLLAKG+VEQA +AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV+P CP A+R+GIGLC YKLGQ KAR+AFQR LQLDPENVEALVAL +M
Sbjct: 181 SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL N+A+GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE NKPH+F+ PYYGLGQVQLKLGDFRS
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+L+NFEKVLE+YP+NCE LKALGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 361 SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I+SDTGAALDAFKTAR LLKK GEEVPIE+LNNIGV++FE+GEFE A Q+FK+A+GDGIW
Sbjct: 421 ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ +D K +Y DA SM FKDMQLFH+ E DG+ VELPWNKVTVLFNLARLLEQ+++
Sbjct: 481 LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
T AS+LYRLILFK+ DY+DAYLRLAAIAKARNN+QLSIELV +ALKVN K PN+L MLG
Sbjct: 541 TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFR+ASDATDGKDSYATLSLGNWNYFAA+R+EKRAPKLEATHLEKA
Sbjct: 601 DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGVVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 661 KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCLRKFYYNTD+Q+LLYLARTHYEAEQWQDCKK+LLRAIHLA
Sbjct: 721 AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAEL+NAVR+FS LSAASNLH HGF
Sbjct: 781 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGF 840
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI THV YCKHLL+AAK+H EAAEREE QNR R E ARQ LAEEARRKAEEQ+K+
Sbjct: 841 DEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQ 900
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
LE+RK EDE KR+ QQE+HF+RVKEQW+S+ SKR+ERS+ DDDE G SE+RRRKGGKR
Sbjct: 901 LERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDDEGGQSERRRRKGGKR 960
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1020
RKKDK S Y++E A AD MD ++E EDED +MN+RE QMN+QDDD E++A D LAA
Sbjct: 961 RKKDK---SRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQDDDGEDDAQDLLAA 1017
Query: 1021 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ-----LRDNTDELQDSDGELREN 1075
AGLEDSD +D+MA + RR+RA SESD+DEP +++ +R+N+ E+Q+SDGE++++
Sbjct: 1018 AGLEDSDAEDDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVRENSAEVQESDGEIKDD 1077
Query: 1076 DHKSNGGAALDDD 1088
+ K NG AA DD+
Sbjct: 1078 NDKPNGDAAEDDE 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1781 bits (4613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1094 (80%), Positives = 984/1094 (89%), Gaps = 15/1094 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++Q+R
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ D DNVPALLGQACVEFNRGR+SD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKR LQV+P+CP A+RLGIGLCRYKLGQ KA+QAF+R LQLDPENVE+L+ALA+M
Sbjct: 181 SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 361 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I SDTGAALDAFKTA TL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 421 ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ ++ + K+ IDA+ S LQFKDMQLFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 481 LSFINEENKS-SIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYD 539
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+ AS+ YRLILFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 540 SGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 599
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWVKAKET R ASDATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 600 ELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKA 659
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KEL TRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 660 KELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 719
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 720 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 779
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 780 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 839
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YC HLL AAK+H EAAE EEQQ RQRQE ARQ ALAEEARRKAEEQ+K+
Sbjct: 840 DEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQ 899
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
+E+RK EDE KR+++QEEHF+RVKEQW+SS+ SKRRERS DD+E G EK+R+KGGKR
Sbjct: 900 MERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGTGEKKRKKGGKR 956
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENANDRLA 1019
RKKDK S+ Y+ E E D+MD + EDE+A +NYR EP QMN DD EENA LA
Sbjct: 957 RKKDKHSKLRYDAEEPEDDLMD-EQGMEDEEADINYREEPQTQMN---DDAEENAQGLLA 1012
Query: 1020 AAGLEDSDVDDEM-APSITAARRRRALSESDDDEP-FERQ---LRDNTDELQDSDGELRE 1074
AAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ +R N+ ++Q SDGE+R+
Sbjct: 1013 AAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRD 1072
Query: 1075 NDHKSNGGAALDDD 1088
D K+NG D++
Sbjct: 1073 GD-KTNGDDGNDEE 1085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1766 bits (4574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1087 (81%), Positives = 984/1087 (90%), Gaps = 17/1087 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWL+IAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEID+YYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRAL V+P CP A+RLGIGLCRYKLGQ KA+QAF+R LDPENVEALVALA+M
Sbjct: 181 SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I SDTGAALDAFKTARTL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 418 ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ ++ + K+ IDA+ S LQFKDM+LFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 478 LSFINEEKKS-SIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLND 536
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+ AS+LYRL+LFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 537 SGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 596
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWVKAKET RAASDAT+GKDSYA+LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 597 ELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKA 656
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 657 KELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 716
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 717 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 776
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 777 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 836
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YC HLL AAK+H EAAEREEQQ RQRQE ARQ A AEEARRKAEEQ+K+
Sbjct: 837 DEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQ 896
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
+E+RK EDE KR++QQEEHF+RVKEQW+SS+ SKRRERS +D++ G EK+R+KGGKR
Sbjct: 897 MERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS-DDEEGGGTGEKKRKKGGKR 954
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENANDRLA 1019
RKKDK S+S Y+TE E + M +E EDE+A +NYR EP QMN DD EENA LA
Sbjct: 955 RKKDKHSKSRYDTEEPE-NDMMDEQEMEDEEADINYREEPQTQMN---DDAEENAQGLLA 1010
Query: 1020 AAGLEDSDVDDEM-APSITAARRRRALSESDDDEPF-ERQ---LRDNTDELQDSDGELRE 1074
AAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ R+N+ ++Q SDGE+R+
Sbjct: 1011 AAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRD 1070
Query: 1075 NDHKSNG 1081
D K+NG
Sbjct: 1071 GD-KTNG 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1765 bits (4572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1079 (80%), Positives = 964/1079 (89%), Gaps = 11/1079 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A+RLGIGLCRY+L Q GKA+QAF+R LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 238 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 298 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 418 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 478 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 538 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 598 ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 718 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 837
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 838 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 897
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRRKGGKR
Sbjct: 898 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 956
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1020
RKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N D LA
Sbjct: 957 RKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAE 1015
Query: 1021 AGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELR 1073
AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 1016 AGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1758 bits (4554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1057 (83%), Positives = 963/1057 (91%), Gaps = 5/1057 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS EIDEYYADVRYERIAILNALG YY+YLGK+ETKQREKEE+FI AT++YNKA
Sbjct: 61 QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AF+IVLE DRDNV ALLGQACVE++RG Y +
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL +KRALQV+P CPGA+RLGIG C YKLG +GKA AFQR LDPENVEALV+LA++
Sbjct: 181 SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NEAA IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYE A YY ASVKEINKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKAAKIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+DTGAALDAFKTAR+LLKK GEEVPIEVLNNI VIHFE+ E E A Q+FK+ALGDGIW
Sbjct: 418 ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
LT L+ K TY +DA++S+LQ+KDMQ+F R E +G+ VEL WNKVT LFNLARLLEQ+H+
Sbjct: 478 LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
T AS LYRLILFKY DYVDAYLRLAAIAKARNNL LSIELVNEAL VN K PNALSMLG
Sbjct: 538 TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFRAAS+ATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 598 DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLFTQVQEAASGS+FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCL+KF+YNTD+QILLYLARTHYEAEQWQDCK++LLRAIHL
Sbjct: 718 AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSAASNL+ +GF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGF 837
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKINTHVEYCKHLL+AA +HREAAEREEQQNRQR + ARQ ALAEEARRKAEEQ+K+
Sbjct: 838 DEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ 897
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
LE+RK EDE KR+RQQEEHF+RVKEQW+SST ASKRR+R++ DD E GH EKRRRKGGKR
Sbjct: 898 LERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKR 957
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1020
RKK+KSSRS YE E EADMMD +EPED+DA++N+REP QMNDQDD+ EENA D LAA
Sbjct: 958 RKKEKSSRSRYEME--EADMMDDHDEPEDDDANVNFREPGYQMNDQDDNAEENAQDVLAA 1015
Query: 1021 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ 1057
AGLEDSD DD+ A +A RR+RA SESD+DE ER+
Sbjct: 1016 AGLEDSDADDDAAAPSSAGRRKRAWSESDEDEISERK 1052
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1732 bits (4486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1093 (80%), Positives = 962/1093 (88%), Gaps = 34/1093 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+Y+RIAILNALG YY+YLGKIETKQREKEE+FI AT+YYNKA
Sbjct: 61 QILEEGSSNDIDEYYADVKYDRIAILNALGAYYSYLGKIETKQREKEEYFIQATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE+EQA +AFKIVLE DRDNV ALLGQACVE+NR Y++
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIEQAYNAFKIVLEGDRDNVSALLGQACVEYNRSHYNE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQVHP CPG+ LDPENVEALV+LA++
Sbjct: 181 SLKSYKRALQVHPECPGS---------------------------LDPENVEALVSLAIL 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NE GIR+GME MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 214 DLQTNEVNGIRRGMESMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYE A YY ASVKE NKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYETASRYYWASVKETNKPSEFVFPYYGLGQVQLKLGEIKN 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIY QLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYAQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
ISSDTGAALDA KTAR+LLKK G EVP+EVLNNIGVI+FE+ E E A ++FK+A+GDGIW
Sbjct: 394 ISSDTGAALDALKTARSLLKKGGHEVPVEVLNNIGVIYFEREELELALETFKEAVGDGIW 453
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L LD K KTY IDA+AS+L +KDMQ FH+ E DG+ VEL W+KVT LFNLARLLEQ+H+
Sbjct: 454 LAFLDGKAKTYTIDAAASILHYKDMQFFHQLEQDGHRVELTWDKVTALFNLARLLEQMHN 513
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
A+VLY LILFKY DYVDAYLRLAAI+KARNNLQLSIELVNEALKVN K PNALSMLG
Sbjct: 514 IETANVLYVLILFKYPDYVDAYLRLAAISKARNNLQLSIELVNEALKVNDKCPNALSMLG 573
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFRAAS+ATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 574 DLELKNDDWVKAKETFRAASEATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKA 633
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLF +VQEAASGS+FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFMEVQEAASGSIFVQMPDVWINL 693
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCLRKFYY+TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFALAVKMYQNCLRKFYYSTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA 753
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNY LRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSA+SNLH HGF
Sbjct: 754 PSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSASSNLHFHGF 813
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKINTHVEYCKHLL+AAK+HREAAEREEQQNRQRQE ARQ ALAEEARRKAEEQKK+L
Sbjct: 814 DEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMALAEEARRKAEEQKKFL 873
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
LEKRK EDE KR+RQQEEHF+RVKEQW++STP SKRR+RSE D++E GHSEKRRRKGGKR
Sbjct: 874 LEKRKQEDELKRVRQQEEHFERVKEQWKTSTPGSKRRDRSEVDEEEGGHSEKRRRKGGKR 933
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1020
RKK+KSS+S YE E EADMMD REE EDEDA++NY E ++++QD+D EENA D LAA
Sbjct: 934 RKKEKSSKSRYEIEEGEADMMDDREELEDEDANVNYGEHKNRLDNQDEDAEENAQDLLAA 993
Query: 1021 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELREN 1075
AGLEDSD +D APS T ARRRRALSESDDDE + +L R N+ ELQ+SDGE+RE
Sbjct: 994 AGLEDSDAED-AAPSST-ARRRRALSESDDDEVLDSKLQSSPVRGNSAELQESDGEIREG 1051
Query: 1076 DHKSNGGAALDDD 1088
K G AA DD+
Sbjct: 1052 ADKQYGDAAFDDE 1064
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1713 bits (4436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1079 (79%), Positives = 941/1079 (87%), Gaps = 35/1079 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAA---------------------------LDPENVEALVGLAII 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 214 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 394 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 453
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 454 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 513
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 514 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 573
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LE KNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 574 ELEXKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 633
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 693
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 753
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 754 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 813
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 814 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 873
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 960
LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRRKGGKR
Sbjct: 874 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 932
Query: 961 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1020
RKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N D LA
Sbjct: 933 RKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAE 991
Query: 1021 AGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELR 1073
AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 992 AGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1050
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1644 bits (4257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1078 (75%), Positives = 934/1078 (86%), Gaps = 10/1078 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 839
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 840 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 899
FD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 900 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGG 958
LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGG
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGG 958
Query: 959 KRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 1016
KRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 959 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHD 1018
Query: 1017 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1071
LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1019 LLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1590 bits (4116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1078 (73%), Positives = 908/1078 (84%), Gaps = 37/1078 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FILAT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKHREKEEQFILATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL YKRALQV P CP A LDP+NVEALVAL +M
Sbjct: 181 SLNLYKRALQVFPGCPAA---------------------------LDPDNVEALVALGIM 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 214 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGDYEKAG+YYMA++KE NKP EF+FPY+GLGQVQLKLG+ +
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELK 333
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ +KA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 334 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNDKALEYMRKATKLDPRDAQAFVGLGEL 393
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA +FK+ALGDGI
Sbjct: 394 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALDNFKEALGDGI 453
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQ+H
Sbjct: 454 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQLH 511
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ LY+LILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 512 KTEAATFLYQLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 571
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 572 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 631
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 632 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 691
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFALA+KMYQNCLRKF+ NTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 692 LAHVYFAQGNFALAVKMYQNCLRKFFNNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 751
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 839
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 752 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 811
Query: 840 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 899
FD KKI THV+YC HLL+AAK+HREAAEREE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 812 FDSKKIQTHVQYCSHLLEAAKVHREAAEREELQNRQRLEVARQAALAEEARRKAEEQRKY 871
Query: 900 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGG 958
LEKRK E+E +RL+Q+EE QR+KEQW+SSTP S KR++R E+DD E SE+RR+KGG
Sbjct: 872 QLEKRKQEEELRRLKQEEEKIQRIKEQWKSSTPGSHKRKDRVEDDDGEGKPSERRRKKGG 931
Query: 959 KRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 1016
KRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 932 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTNQEAEEPVDDDAHD 991
Query: 1017 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDN---TDELQDSDGE 1071
LAAAGLED DV D+ P+ + RRRRALS SD++ + + N T E ++S+GE
Sbjct: 992 LLAAAGLEDPDVYDDEVPA-SGVRRRRALSSSDEEGELMEESQPNQSPTREKEESNGE 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1560 bits (4038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1125 (70%), Positives = 914/1125 (81%), Gaps = 80/1125 (7%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSP---------------EIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 61 QILEEGSSSGKQLYDDAASICSRIDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 120
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 121 KEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 180
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA-- 223
LGQA VEFNRGR+S+SL+ YKLGQL KARQAF R
Sbjct: 181 LGQASVEFNRGRFSESLQL-----------------------YKLGQLDKARQAFDRVLQ 217
Query: 224 ------------------------------LQLDPENVEALVALAVMDLQANEAAGIRKG 253
LQLDP+NVEALVAL +MDLQAN++ G+RKG
Sbjct: 218 ASGTGMFISSSYDIADCMRQQIVLITIILFLQLDPDNVEALVALGIMDLQANDSIGMRKG 277
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
M++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT HGPTKSHS+YNLAR
Sbjct: 278 MDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTHGPTKSHSFYNLAR 337
Query: 314 SYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
SYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+Y
Sbjct: 338 SYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVY 397
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 432
PDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAF
Sbjct: 398 PDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAF 457
Query: 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492
K ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K +
Sbjct: 458 KMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--L 515
Query: 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552
S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLIL
Sbjct: 516 EQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLIL 575
Query: 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 612
FKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKA
Sbjct: 576 FKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKA 635
Query: 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672
KETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH
Sbjct: 636 KETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHN 695
Query: 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732
SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL
Sbjct: 696 SNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFAL 755
Query: 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792
+KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G
Sbjct: 756 TVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGA 815
Query: 793 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 852
MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC
Sbjct: 816 VMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYC 875
Query: 853 KHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKR 912
HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +R
Sbjct: 876 SHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRR 935
Query: 913 LRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS-H 970
L+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKSSR+ H
Sbjct: 936 LKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARH 995
Query: 971 YETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1029
YE + EA MD E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DVD
Sbjct: 996 YEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVD 1055
Query: 1030 DEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1071
D+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1056 DDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1099
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1088 | ||||||
| TAIR|locus:2051592 | 1091 | ELF8 "EARLY FLOWERING 8" [Arab | 0.981 | 0.978 | 0.714 | 0.0 | |
| DICTYBASE|DDB_G0277841 | 1106 | ctr9 "RNA polymerase II comple | 0.954 | 0.938 | 0.283 | 1.8e-126 | |
| UNIPROTKB|Q6DEU9 | 1172 | ctr9 "RNA polymerase-associate | 0.429 | 0.398 | 0.376 | 1e-111 | |
| UNIPROTKB|G3V897 | 1173 | Ctr9 "SH2 domain binding prote | 0.542 | 0.502 | 0.338 | 2.5e-90 | |
| MGI|MGI:109345 | 1173 | Ctr9 "Ctr9, Paf1/RNA polymeras | 0.542 | 0.502 | 0.338 | 1.7e-89 | |
| UNIPROTKB|Q4QR29 | 1157 | ctr9 "RNA polymerase-associate | 0.429 | 0.403 | 0.382 | 6.3e-89 | |
| UNIPROTKB|Q6PD62 | 1173 | CTR9 "RNA polymerase-associate | 0.542 | 0.502 | 0.338 | 7.5e-89 | |
| UNIPROTKB|F1S6V3 | 1173 | CTR9 "Uncharacterized protein" | 0.542 | 0.502 | 0.338 | 9.5e-89 | |
| UNIPROTKB|E1C9K0 | 1167 | CTR9 "Uncharacterized protein" | 0.542 | 0.505 | 0.339 | 1.5e-88 | |
| ZFIN|ZDB-GENE-030131-3782 | 1160 | ctr9 "Ctr9, Paf1/RNA polymeras | 0.429 | 0.402 | 0.374 | 6.7e-86 |
| TAIR|locus:2051592 ELF8 "EARLY FLOWERING 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3985 (1407.8 bits), Expect = 0., P = 0.
Identities = 770/1078 (71%), Positives = 885/1078 (82%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 839
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 840 FDEKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKY 899
FD KKI THV+YC HLL+AAK+H +KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 900 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEXXXXXXX 958
LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGG 958
Query: 959 XXXXXXXXXXX-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 1016
HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 959 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHD 1018
Query: 1017 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1071
LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1019 LLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
|
| DICTYBASE|DDB_G0277841 ctr9 "RNA polymerase II complex component" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
Identities = 310/1094 (28%), Positives = 567/1094 (51%)
Query: 4 VYIPVQN-SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+YIP++ +++ +++ + LP D+ +++++LKAE APLDLWL +A EY+KQ ++ F ++
Sbjct: 10 IYIPIRGFNDQALKIDISSLP-DSKELIEVLKAELAPLDLWLKLANEYYKQDRITDFIEV 68
Query: 63 LEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
L++ + ++++YY D + +RIA+LNAL YYT LG E + +EE+F AT ++ KA R
Sbjct: 69 LKQVTDADLEQYYKDSKLDRIAMLNALASYYTQLGSQEKDKSRREEYFSNATFHFTKADR 128
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGR 177
ID H+P TW+GK LLL KG+ E+A S FK VL+ + N +PA LG AC+ FN+G
Sbjct: 129 IDPHQPLTWIGKAVLLLTKGDYERAESNFKQVLDLAKSNNTLPVLPAKLGSACILFNQGN 188
Query: 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
Y +L+ Y++ +Q + +C ++RLG+G C +KLG+ KA++AF+R L+LD +NVEA++ L
Sbjct: 189 YIKALDTYQKVIQQNSNCLPSVRLGLGYCYFKLGRTKKAKEAFKRVLELDRDNVEAMIGL 248
Query: 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
A++ + N+ I + M+ + A+++ P ++ LN+LANH+FF G++ V L A
Sbjct: 249 ALVLMNENQ---IPEAMKLILSAYQLAPTNSIVLNHLANHYFFRGEYNKVNTLGVAAFNN 305
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
T+ K+ S Y + R++H+ ++ A YY +V++ P ++ +GLGQ+ + D
Sbjct: 306 TDVAHIKAESAYLIGRAFHATQRWQDAIQYYHQAVQK--NPDLYL-AQFGLGQIHIHNED 362
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
+ A+ FE+VL P+N ETL+ LG +Y G + K+ +
Sbjct: 363 YDKAILCFEQVLSKQPNNYETLQILGSLYKH-GSLYKSN-----VKSTTTTTSTTTTTNN 416
Query: 418 ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN--NIGVIHFEKGEFESAHQSFKDAL 475
+ I+++ + + + +LKKA E P + N +G + E E +A ++++ L
Sbjct: 417 NININNNNNLSNEIINKIKNVLKKATELNPNDSSNWFELGQV-LESTEVSTALEAYEKGL 475
Query: 476 G----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV-ELPWNKVTVLFN 530
DGI + L+ + V+ +L + + G + + +T +N
Sbjct: 476 NLLKKDGI-VPSLEIQNNIAVLRHQKGLLVEAEQTYLDIIKQSGYQLNQFKSINITSTYN 534
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
LARL E + A LY+ I+ ++ +Y D YLRL+ I K + + + E + E L +
Sbjct: 535 LARLYETMGQVNKAEELYKGIIKEHPNYYDCYLRLSCICKQQGDYYEAGEWIREVLDIQP 594
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRA 649
A ++ G+L L ++W A++ F ++ D K ++YA+LSLGN Y A N +
Sbjct: 595 DNQEAWALYGNLHLYKEEWYPAQKNFEQITENPDNKNETYASLSLGNIYYNAKFSNPDKV 654
Query: 650 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709
K ++ A++ Y RV+ ++ +N+YAANG G+++AEKG +++ + F Q++EA+ +
Sbjct: 655 EK----YILNAEQFYNRVLTKNPTNIYAANGIGMIIAEKGNLNLAGETFLQIREASMDCI 710
Query: 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ-ILLYLARTHYEAEQWQD 768
P V +NLAH+Y ++G F A+K+Y+ CL+K + + I++YLA+ +++A ++ D
Sbjct: 711 ----P-VSVNLAHIYVSKGLFDNAIKLYEGCLKKSTSPKEIETIIMYLAKVYFDANRFYD 765
Query: 769 CKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSH 828
K++L +AIH+ P N ++ F+ ++++ + L+K ++ A E + + ELE A R+ +
Sbjct: 766 SKQTLKKAIHMYPHNLSIHFNLAISIEMQATIFLEKHQKNATETFNIIKELEFAQRLLTP 825
Query: 829 LSAASNLHLHGFDEKKINTHVEYCKHLLDAAKI-HXXXXXXXXXXXXXXXXXXXXXXXXX 887
L+ + F K TH + +L + + H
Sbjct: 826 LANTKSTPKLNFSPSKAKTHQTSIEKILVSLRTEHESIVKIEADLSKKREAAFEEVKRLE 885
Query: 888 XXXXXXXXXKKYLLEKRKLEDEQKRLRQQEEHFQR-----------VKEQWRSSTPAS-K 935
K LE+ KLE E+K ++EE + + + ++ S K
Sbjct: 886 EEKRIRDLELKQQLEE-KLEAERKLAFEEEEKTREELAKNNAAAAMIDDDYKDGEGGSTK 944
Query: 936 RRERSENDDDEVGHSEXXXXXXXXXXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMN 995
+R++++ D + + E E + E E+ + +
Sbjct: 945 KRKKNKKDQQQQDDDFDDQPAESKKKQKKEKKEKKEKKEKKEKKKKSKKVSGEGEEGADD 1004
Query: 996 YREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFE 1055
+ Q + +D + + + + D D+ +R + E ++D+ E
Sbjct: 1005 NNDTEQQQEEMAEDGDHKEKKKKKKSKKDRKDKKDKKQKRKEKKQREKEEREGEEDD--E 1062
Query: 1056 RQLRDNTDELQDSD 1069
+ +N +E QD D
Sbjct: 1063 NEETENREE-QDDD 1075
|
|
| UNIPROTKB|Q6DEU9 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.0e-111, Sum P(3) = 1.0e-111
Identities = 180/478 (37%), Positives = 277/478 (57%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASL 478
|
|
| UNIPROTKB|G3V897 Ctr9 "SH2 domain binding protein 1 (Tetratricopeptide repeat containing), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.5e-90, Sum P(2) = 2.5e-90
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| MGI|MGI:109345 Ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 1.7e-89, Sum P(2) = 1.7e-89
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|Q4QR29 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 183/478 (38%), Positives = 279/478 (58%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASL 478
|
|
| UNIPROTKB|Q6PD62 CTR9 "RNA polymerase-associated protein CTR9 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 7.5e-89, Sum P(2) = 7.5e-89
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|F1S6V3 CTR9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 9.5e-89, Sum P(2) = 9.5e-89
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|E1C9K0 CTR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.5e-88, Sum P(2) = 1.5e-88
Identities = 206/606 (33%), Positives = 325/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQN 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| ZFIN|ZDB-GENE-030131-3782 ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.7e-86, Sum P(2) = 6.7e-86
Identities = 179/478 (37%), Positives = 280/478 (58%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ +T Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKDLINQSTLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F+ VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + D +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASST--FVLPFFGLGQMYVYRRDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+E L+K D +A+I+L +
Sbjct: 361 AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASL 478
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1088 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-26 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-09 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 5e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 4e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 5e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 6e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.001 | |
| pfam13371 | 73 | pfam13371, TPR_9, Tetratricopeptide repeat | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.002 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 0.003 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.003 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.004 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 5e-26
Identities = 151/707 (21%), Positives = 256/707 (36%), Gaps = 101/707 (14%)
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
L G++E A +++ L D ++ A LG A + R+ ++ L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ L L LG + A A+++A+ L P N+ L+ALA + ++A E K + +
Sbjct: 196 LLLKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 259 RAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315
+ P Y +++ ++ E ET P + S
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNY---------EDARETLQDALKSAPEYLPALLLAGASE 305
Query: 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+ G+ E+A Y +K P+ L +QL+LG A+ L + PD+
Sbjct: 306 YQLGNLEQAYQYLNQILKYA--PN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS----------DT 425
L LG Y+ LG EKA E L KA ++DP +A A LG +S +T
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
Query: 426 GAALD----------------------AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463
A LD A A+ L KK + + L +G I+ KG+
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL--LGAIYLGKGD 480
Query: 464 FESAHQSFKDALG-------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516
A ++F+ AL L +D + + ++ +F+ + D
Sbjct: 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEG----NPDDAIQRFEKVLTI-----DPK 531
Query: 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576
++ + LA L + + A ++ L LA + L+
Sbjct: 532 NLR-------AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584
Query: 577 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGKDSYATLSLG 635
++ ++NEA P A MLG +L D KA +F+ + D + L+
Sbjct: 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
Query: 636 NW---NYFAALRNEKRAPK----------------LEATHLEKAKELYTRVIVQHTSNLY 676
NY A+ + KRA + L A E AK++ + QH
Sbjct: 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
G + + + + + + + A S I L A GN A A+K
Sbjct: 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA------IKLHRALLASGNTAEAVKT 758
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ L+ + DA + LA + + + K + AP N
Sbjct: 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-23
Identities = 120/545 (22%), Positives = 214/545 (39%), Gaps = 48/545 (8%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143
A L+ LG YL + ++ A +Y KA+ +D + G L++G+
Sbjct: 364 AALSLLG--EAYLALGDFEK---------AAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
+A + + + D + A L G++ +L K+ + P L +
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-L 471
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G G L KAR+AF++AL ++P+ A LA +D+Q + + ++ I
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ---RFEKVLTI 528
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P A+ LA + TG E A + P + LA+ Y KG +K
Sbjct: 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKK 585
Query: 324 AGLYYMASVKEINKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A +A + E + LG+ QL GD A+++F+K+L + PD+ L L
Sbjct: 586 A----LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 442
Y + KA L++A ++ P + +A I L +LL+ A K A++L K+
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQH 699
Query: 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502
+ L G ++ + ++ +A Q+++ AL + + S + ++
Sbjct: 700 PKAALGFEL--EGDLYLRQKDYPAAIQAYRKAL----------KRAPS-----SQNAIKL 742
Query: 503 KDMQLFHRFENDGNHVELPW-----NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557
L + W N + LA L D A Y+ ++ K D
Sbjct: 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
LA + + + ++E ALK+ P L LG L ++ + +A R
Sbjct: 803 NAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861
Query: 618 AASDA 622
A +
Sbjct: 862 KAVNI 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 6e-14
Identities = 159/806 (19%), Positives = 271/806 (33%), Gaps = 150/806 (18%)
Query: 8 VQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGS 67
+N +E R +D+ +L A+ +D L+ G +E +
Sbjct: 171 AENRFDEARALIDE----------VLTADPGNVDALLLKGDLLLSLGNIELALAAYRK-- 218
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127
+R IA+L AL G+ E A ++ + + +
Sbjct: 219 -------AIALRPNNIAVLLALATILIEAGEFE-----------EAEKHADALLKKAPNS 260
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
P K + K E A + L++ + +PALL E+ G + ++ +
Sbjct: 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247
L+ P+ A RL + + +LG++ +A AL LDP++ AL L L +
Sbjct: 321 ILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307
K E + +A E+ P A A L G ETA + P +
Sbjct: 380 E---KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRA 433
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSAL 362
L SY G ++KA +A+ K++ + + LG + L GD A
Sbjct: 434 DLLLILSYLRSGQFDKA----LAAAKKLEKKQPDNAS----LHNLLGAIYLGKGDLAKAR 485
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422
FEK L I PD L I +Q G + A + K IDP++ +A + L L
Sbjct: 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY-- 543
Query: 423 SDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG-- 478
+ A L+KA E P IE + + KG+ + A +A
Sbjct: 544 ----LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599
Query: 479 ---IWLTLLDS---------------KTKTYVIDASASMLQFKDMQLFHR---------- 510
WL L + K D++ ++L D +
Sbjct: 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
Query: 511 --FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E ++ E LA+LL T +A + + + ++ + +
Sbjct: 660 RALELKPDNTEA-------QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712
Query: 569 AKARNNLQLSIELVNEALKV----------------NGKYPNA----------------- 595
+ + +I+ +ALK +G A
Sbjct: 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772
Query: 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655
+ L +L L D+ KA + ++ D+ L N A L E + P+
Sbjct: 773 RTALAELYLAQKDYDKAIKHYQTVVKKA--PDNAVVL-----NNLAWLYLELKDPRALE- 824
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+ E+A +L + + G +L EKG+ D + L + A +
Sbjct: 825 YAERALKL-------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-----AA 872
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCL 741
+ +LA A G A A K L
Sbjct: 873 IRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-14
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
NL Y+ GDY++A YY ++ E++ + YY L KLG + AL ++EK
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELD--PDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LE+ PDN + LG Y +LG+ E+A E KA ++DP
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-13
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKK 441
+DP +A+A+ +LG AL+A++ A L
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G L G+ ++A ++ LE D DN A A + G+Y ++LE Y++AL+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P A +GL YKLG+ +A +A+++AL+LDP
Sbjct: 63 LDPDNAKAYYN-LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 14/257 (5%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHF 278
+ ALQ DP + EA L + A G EK +++A + L LA +
Sbjct: 45 LKNALQKDPNDAEARFLLG----KIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
G+ V + + G + + LA Y G E A Y ++
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA--YLGLGQLELAQKSYEQALA---ID 155
Query: 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
++ GL Q+ L F A ++VL P N + L G + + LG IE A
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 399 LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458
RKA + P + + L +LI G +A K A LLKKA L ++
Sbjct: 216 YRKAIALRPNNIAVLLALATILIE--AGEFEEAEKHADALLKKAPNSPLAHYLK--ALVD 271
Query: 459 FEKGEFESAHQSFKDAL 475
F+K +E A ++ +DAL
Sbjct: 272 FQKKNYEDARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-09
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
E L LG++Y +LG ++A E KA ++DP +A A+ +L L ++ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------LGKYEEAL 54
Query: 437 TLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+KA E P + N+G+ +++ G++E A ++++ AL
Sbjct: 55 EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 34/133 (25%), Positives = 44/133 (33%), Gaps = 38/133 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ P + +VLNN G +G
Sbjct: 98 LAPNNG--------------------------------------DVLNNYGAFLCAQGRP 119
Query: 465 ESAHQSFKDALGD 477
E A Q F+ AL D
Sbjct: 120 EEAMQQFERALAD 132
|
Length = 250 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ S LA + + +GD + L + + G Q++ G+F A
Sbjct: 63 NPEDLSIAKLATALYLRGD-ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEA 119
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
++ K + P + E LG QLG+ ++A+ R+A ++ P + +LG L+
Sbjct: 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179
Query: 422 SSDTGAALDAFKTARTLLKKA 442
+ A TLL A
Sbjct: 180 LRGD------LEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
ALL + + G Y ++LE+Y++AL++ P + YKLG+ +A + +++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 224 LQLDPENVEALVALAVMDLQANE 246
L+LDP+N +A L + + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGE 463
+ + G L ++ A ++A E P L N G+ + G+
Sbjct: 97 NNGDVLNNYGTFLCQ------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 464 FESAHQSFKDAL 475
F+ A + AL
Sbjct: 151 FDKAEKYLTRAL 162
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 45/207 (21%)
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
IR+ + L + G L A++ +AL+ DP++ A +ALA+ L E
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-------- 82
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+A + + AL + + N
Sbjct: 83 ----KAEDSF---------------------------RRALTLNPNNGD---VLNNYGTF 108
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+G YE+A + ++++ P G LK GDF A + L+I P
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPAR-SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRK 401
E+L L +Y GQ + A+ L +
Sbjct: 168 RPESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 42/227 (18%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
+S D KA + + L A Y +QG +E ++ L++ + E D
Sbjct: 21 SSRTTDRNKAAKIRVQL----ALGYLEQGDLEVAKENLDK--ALEHDPDDYLAY------ 68
Query: 86 LNALGVYYTYLGKIETKQREKEE-----------------------HFILATQYYNKASR 122
AL +YY LG++E + + A Q + +A
Sbjct: 69 -LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
Query: 123 IDM--HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+ + G L G+ ++A L+ D +LL A + + RG+Y D
Sbjct: 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + +R Q + ++ LGI + R LG A + QL
Sbjct: 188 ARAYLERYQQTYNQTAESLWLGIRIAR----ALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K + A +YY KA +D + G+ E+A ++ LE D DN A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ G+Y ++LE Y++AL++ P+
Sbjct: 72 YNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L +G YKLG +A + +++AL+LDP+N +A LA + + + +E ++A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKA 60
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
E+ P A A L ++ G++ + E AL +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 403
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 404 KIDP 407
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 74/378 (19%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALG 90
+ A + WL++ R G + + ++ +A+
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK----------------LLALQPDSA 635
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L + + A +A + +G QLLLA E A
Sbjct: 636 LALLLLADAYAVMKNYAK----AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 151 FKIVLEADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
K L+ + + Y +++ Y++AL+ PS AI+L L
Sbjct: 692 AKS-LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL---- 746
Query: 210 LGQLGKARQAFQRA---LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
G +A + L+ P + ALA + L + K ++ Q + P
Sbjct: 747 -LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD---KAIKHYQTVVKKAPD 802
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A+ LN NLA Y + +A
Sbjct: 803 NAVVLN-------------------------------------NLAWLYL-ELKDPRALE 824
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
Y ++K + G + ++ G+ AL K + I P+ L
Sbjct: 825 YAERALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881
Query: 387 VQLGQIEKAQELLRKAAK 404
+ G+ +A++ L K
Sbjct: 882 LATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQ 218
DN AL F G Y +++E Y++AL++ P + L KLG +A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA-EAYYNLALAYLKLGKDYEEALE 59
Query: 219 AFQRALQLDP 228
++AL+LDP
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 68/380 (17%), Positives = 127/380 (33%), Gaps = 44/380 (11%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L + + +TLL G E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQAL 152
Query: 476 GDGI---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514
L+D + A +L+ + E
Sbjct: 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212
Query: 515 ----GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 569
+ L N + VL LA L+E A L+ + YL+ A +
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVD 271
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629
+ N + + E + +ALK +Y AL + G E + + +A +
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQ 330
Query: 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 689
A L + +L +++A + + + A + G G
Sbjct: 331 ARRLLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377
Query: 690 QFDVSKDLFTQVQEAASGSV 709
F+ + + + E +
Sbjct: 378 DFEKAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 775 RAIHLAPSNYTLRFDAGVAMQK 796
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 398 LLRKAAKIDPR 408
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ A + KA D + + GE + A +++ L +N L
Sbjct: 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110
Query: 170 CVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+GR ++++ ++RAL + + +GLC K GQ +A + +RAL+LD
Sbjct: 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTL-ENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
P+ AL+ LA + +A + A R +E+ Q
Sbjct: 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 1e-05
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 16/226 (7%)
Query: 782 SNYTLRFDAGVAMQKFSASTLQKT--RRTADEVRST--VAELENAVRVFSHLSAASNLHL 837
+++ R A A + A L+K ++ ADE + + + A + A
Sbjct: 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
Query: 838 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA-----EEARRK 892
+ KK + K + AK EAA+ E + EAA + A A EEA++K
Sbjct: 1323 KAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 893 AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEK 952
A+ KK EK+K ++ +++ E ++ ++ + + A K+ + ++ +E +++
Sbjct: 1380 ADAAKKKAEEKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 953 RRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYRE 998
++K + +K D++ + E + AE E + ++A E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 2e-05
Identities = 30/128 (23%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 856 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 911
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 912 RLRQQEEHFQRVK--EQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 969
+ + ++ + K ++ + +K+ + ++ +E +E+ ++K + +K D++ +
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 970 HYETEYAE 977
E + A+
Sbjct: 1479 AEEAKKAD 1486
|
Length = 2084 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 5/259 (1%)
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKL 210
+ + + + + L + G +++LE + AL++ P+ A L + L KL
Sbjct: 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKL 72
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G+L +A + ++AL+L+ A AL + L + +E +++A + P +A
Sbjct: 73 GRLEEALELLEKALELELLPNLAE-ALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Query: 271 LNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329
LA + G + +L E AL + + + L + G YE+A
Sbjct: 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++K P + LG + LKLG + AL +EK LE+ PDN E L L + ++L
Sbjct: 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 390 GQIEKAQELLRKAAKIDPR 408
G+ E+A E L KA ++DP
Sbjct: 250 GRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK----PHEFIFPYYGLGQVQLKLGD 357
P + + NLA GDY++A +++ + E L ++ L LGD
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 358 FRSALTNFEKVLEIYPD 374
+ AL EK L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (109), Expect = 3e-05
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
+L AL + A+ LG+L +A + + AL+L P + A +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L + + + + +E +++A E+ +A L E L A
Sbjct: 63 LLLAL-ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ + + GDYE+A Y +++ + +E LG + LG
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 357 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ AL EK L++ PD+ E L LG +Y++LG+ E+A E KA ++DP +A+A +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 416 LGELL 420
L LL
Sbjct: 242 LALLL 246
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS--DTGAALDA 431
DN E LK LG+ +LG ++A E KA ++DP +A+A+ +L + D AL+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 432 FKTARTL 438
+ A L
Sbjct: 61 LEKALEL 67
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 48/235 (20%)
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
+ + ++ E+ P + A+ G E+ + AL + YY+ A+
Sbjct: 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQ 407
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+ KG++ +AG Y K I+ +FIF + LG Q K G S++ F + + +P
Sbjct: 408 LHFIKGEFAQAGKDYQ---KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
Query: 374 DNCETLKALGHIYVQLGQIEKAQE------------------------------------ 397
+ + G + + + ++A E
Sbjct: 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524
Query: 398 -----LLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEV 446
L KA IDP A + +LL+ D AL F+ A L + GE V
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLL 439
L Y++ G +E A+E L KA + DP D A++ L + A D+F+ A TL
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
G +VLNN G ++G++E A Q F+ A+ D
Sbjct: 96 PNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF---EIYPYCAMALNYLANHFFFT 281
+LD E + L + ++ + ++A ++ A+ALN
Sbjct: 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341
G+H +E L + + ++ P + SY A GD +KA + ++K ++ +
Sbjct: 345 GKH--LEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
Query: 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401
YY Q+ G+F A +++K +++ PD + LG + G I + R+
Sbjct: 402 ---YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
Query: 402 AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKK 441
K P + GELL+ + A++ F TA L K+
Sbjct: 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
L A G Y ++L + AL +P A L +G + G+L +A + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA-LLLLGEALLRQGRLAEAAALLRAALA 59
Query: 226 LDPEN 230
DP++
Sbjct: 60 ADPDD 64
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 406 DPRDA 410
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 291 TETALAVTNHGPTKSH--SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YY 346
T + +V G S YN A + GDY +A + A +K P+ P YY
Sbjct: 125 TPGSASVDGDGAPVSPATKLYNAALDLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYY 182
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403
LG+ GD+ A F +V++ YP + + L LG +LG ++A L++
Sbjct: 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242
Query: 404 KIDPRDAQA 412
K P A
Sbjct: 243 KRYPGTDAA 251
|
Length = 262 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 2e-04
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG-QL 137
+ + +L L LG + + EE A + KA +D
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEE----ALELLEKALALDPDPDLAEALLALGA 139
Query: 138 LLAKGEVEQASSAFKIVLEAD---RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L G+ E+A ++ LE D + ALL + GRY ++LE ++AL+++P
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L +GL KLG+ +A + +++AL+LDP+N EAL LA++ L+ + +
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 255 EKMQRAFEIY 264
EK
Sbjct: 260 EKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 858 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 917
AA R+ +Q AA+ A A + E Q R R++
Sbjct: 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA----ASAPEAAQARERRER 133
Query: 918 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAE 977
R ++ + + D E E+R + + ++D+ + AE
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE-------AE 186
Query: 978 ADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSIT 1037
REE + + R+ Q + +++ + DR D
Sbjct: 187 RGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-----D 241
Query: 1038 AARRRRALSESDDDEPF-----------ERQLRDNTDELQDSDGELREND 1076
R R + DD E +R+ R D + + ELRE+D
Sbjct: 242 DNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-04
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 842 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 901
++ VE K K E ++ E++N+ + AA +A AEE ++KAEE KK
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 902 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH--SEKRRRKGGK 959
+++K + K+ E + E+ + K++ +E +E+ +++ +
Sbjct: 1686 DEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 960 RRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDR 1017
+KK + ++ E E + + EE + E+ I + D++D+ D+
Sbjct: 1742 DKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 858 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK--RLRQ 915
A + R+ ++ R A RQAA+ E RKA+E KK EK+K ++ +K ++
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKK 1303
Query: 916 QEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYET-- 973
+E ++ +E ++ K E + D +E+ ++ + + +++ E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 974 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEEN 1013
E AEA E + DA+ E + ++ EE+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
Length = 2084 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + ++KA +++ +P + + QL KGE QA ++ ++ D D + + + +
Sbjct: 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443
Query: 173 FNRGRYSDSLEFYKRALQVHPSCP 196
+ G + S+ ++R + P P
Sbjct: 444 YKEGSIASSMATFRRCKKNFPEAP 467
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 770
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 771 KSLLRAIHLAP 781
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 860 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 917
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK--AKQA 129
Query: 918 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKD 964
+ E + ++++E + +E +++ ++K +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGD 357
YY+ A GDY A I F+ +P +Y LG+ GD
Sbjct: 3 YYDAALLVLKAGDYADA----------IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGD 52
Query: 358 FRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F V++ YP + + L LG +LG EKA+ L++ K P + A
Sbjct: 53 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 863 REAAEREEQQNRQRQEAARQA-ALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 921
ER E R+ R+ L E+ +E+ + E +LE+ + L + E
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
Query: 922 RVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMM 981
+ + R E +E+ E +R + + ++ + + E ++
Sbjct: 880 NERAS--LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 982 -DYREEPEDEDASMNYREPIGQMNDQDDDVEE 1012
D +E E+ S+ E N +DD EE
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L G+ ++A +A + L ALL +GR +++ + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 194 S 194
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 404
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 405 IDPRDAQA 412
+DP + +A
Sbjct: 222 LDPANIRA 229
|
Length = 287 |
| >gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ +L +R L + P P R GL +LG A + L+L P+ +
Sbjct: 6 LREEDFERALAVVERLLLLAPDDPYERRDR-GLLYAQLGCFQAALADLEYFLELCPDAPD 64
Query: 233 ALVALAVM 240
A +
Sbjct: 65 AERIREQL 72
|
Length = 73 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.001
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 863 REAAEREEQQNRQRQEAARQAA-----LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 917
+E E+EEQ +R+E R+AA EEARR+ EE+ + EK K + E++ ++QE
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 918 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 961
E + K++ + A + ER + ++ ++ R K+R
Sbjct: 104 EQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFE 366
NL + GDY++A Y +++ E YY L LKLG D+ AL + E
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNLALAYLKLGKDYEEALEDLE 62
Query: 367 KVLEIYP 373
K LE+ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.002
Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 803 QKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK--INTHVEYCKHLLDAAK 860
++ ++ AD + E + A + A+ +EK E K DAAK
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 861 IHREAAEREEQQNRQRQEAARQA---ALAEEARRKAEEQKKYLLEKRKLEDEQKRL---R 914
E ++ ++ ++ +E ++A A A++KA+E KK EK+K ++ +K+ +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 915 QQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 974
+ +E ++ +E ++ K E + D+ + E ++ K++ ++ ++ +
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Query: 975 YAEA 978
AEA
Sbjct: 1505 AAEA 1508
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 858 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 917
A ++ ++ AE +++ ++ AEEA+++AEE KK E +K E+E+K++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 918 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 953
+ ++ E+ R A E E D+ +K+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
Length = 2084 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 EVEQASSAFKIVLEADRDNVP--ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
E+E + + L+ + + LLG+A GR SD+L Y+ AL++ P I
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRA--YMALGRASDALLAYRNALRLAGDNP-EIL 193
Query: 201 LGIGLCRYKL--GQLG-KARQAFQRALQLDPENVEALVALA 238
LG+ Y Q+ KAR ++AL LDP N+ AL LA
Sbjct: 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234
|
Length = 287 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 832 ASNLHLHGFDEKKINT-HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEAR 890
A LH + KK T K R AAERE NR+ ++ A AR
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAERE--INREARQERAAAMARARAR 379
Query: 891 RKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSEND 943
R A + KK L +E + EE + ++T A RE S+ D
Sbjct: 380 RAAVKAKKKGL-IDASPNEDT-PSENEESKGSPPQV-EATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 842 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKEQWRS 929
+ KLE +KRL QEE V E R
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAVRE 92
|
Length = 198 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 406 DPRDAQAFIDLGELLI 421
DP ++L + L+
Sbjct: 370 DPNSPLLQLNLAQALL 385
|
Length = 484 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFY 745
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+G KLG+ +A + +++AL+L+P N
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-ALQV 191
+ + L+ + +A+ K L+A +N A L A G + LQ
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198
Query: 192 HPSCPGAIRLGIGLCRYKLGQLGKAR--QAFQRALQLDPENVEALVALAVMDLQA--NEA 247
++ I L L Q Q QR L DP++VEA +ALA NEA
Sbjct: 199 QDKAAHGLQAQIEL----LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEA 254
Query: 248 A 248
A
Sbjct: 255 A 255
|
Length = 304 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
A L ++ D A + L + D RL + + L I+ + LK +
Sbjct: 269 YAERLIRLGDHDEAQEIIEDALKRQWD--PRLCRLIPRLRPGDPEPL-IKAAEKWLKQHP 325
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
+ P LS LG L LKN W KA E AA YA L+
Sbjct: 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKID 406
LG + L GD+ +A+ E+V E P+ E L L Y LG + E LR+A +
Sbjct: 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 441
P A + L +LL + A A R L++
Sbjct: 280 PG-ADLLLALAQLLEEQEGPEA--AQALLREQLRR 311
|
Length = 389 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV-------HPSCPGAIRLGIGLCRYKLGQLGKA 216
AL A V G Y ++LE ++AL++ HP + LG +A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPET-ARALNNLARLYLALGDYDEA 65
Query: 217 RQAFQRALQLDPE 229
+ ++AL L
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 18/241 (7%)
Query: 865 AAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRL----------- 913
A+ + ++ + +E ++ E+ ++K + +++ K K E ++KR
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Query: 914 ----RQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 969
R +EE +R + + S P +++ N E EK+R+ + K
Sbjct: 154 VEEPRDREEEKKRERVR-AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 970 HYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1029
E E D RE R+ +++ A+
Sbjct: 213 VNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSK 272
Query: 1030 DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDS--DGELRENDHKSNGGAALDD 1087
T+ R A S P + ++ LQD+ G++ N + +D
Sbjct: 273 RTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDED 332
Query: 1088 D 1088
D
Sbjct: 333 D 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.9 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.87 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.77 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.74 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.74 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.69 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.68 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.37 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.34 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.33 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.17 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.15 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.08 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.03 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.0 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.98 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.91 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.87 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.87 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.76 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.73 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.6 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.59 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.55 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.48 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.47 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.46 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.36 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.31 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.29 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.24 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.14 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.11 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.11 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.06 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.92 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.89 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.83 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.82 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.77 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.73 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.66 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.65 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.62 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.6 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.6 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.57 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.53 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.41 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.33 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.33 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.24 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.09 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.08 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.07 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.05 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.05 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.03 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.99 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.99 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.88 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.8 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.77 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.73 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.71 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.7 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.7 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.63 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.59 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.5 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.48 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.31 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.25 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.14 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.12 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.04 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.01 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.01 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.95 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.9 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.89 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.87 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.8 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.75 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.71 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.53 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.48 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.01 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.97 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 94.96 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.83 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.81 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.76 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.75 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.53 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 94.29 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.09 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.77 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.7 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.61 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.42 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.38 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.37 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.27 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.96 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 92.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.88 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 92.87 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 92.54 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.38 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 92.35 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 92.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.23 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.09 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 91.79 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 91.78 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.69 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 91.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 91.44 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.29 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 91.16 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.98 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 90.63 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 90.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 90.04 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.0 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 89.88 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.71 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 89.67 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 89.5 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 89.35 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 89.29 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.18 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 89.12 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 89.04 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.97 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.78 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 88.12 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.86 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.34 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.08 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 87.02 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 86.97 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.94 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 86.72 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.48 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.18 | |
| PF12854 | 34 | PPR_1: PPR repeat | 86.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.0 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 85.64 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 85.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 85.43 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 84.66 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 84.64 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 84.14 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.91 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 83.73 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.62 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 83.29 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 83.21 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 83.07 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.87 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 82.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.3 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.15 | |
| PF06936 | 190 | Selenoprotein_S: Selenoprotein S (SelS); InterPro: | 81.32 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-120 Score=1019.02 Aligned_cols=1000 Identities=40% Similarity=0.651 Sum_probs=897.4
Q ss_pred CceeeeccCCCCceEEEeCCCCCCChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001392 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1088)
Q Consensus 1 ~~~~~ip~~~~~e~v~i~~~~lp~~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~ 80 (1088)
|+||+|||++++|||+||+++|| |++||++||++|.+++++|+.+|.+||++|+.++|+.||+.++. +.+..|.++..
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~-~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLI-DANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhh-cccchhcchHH
Confidence 57999999999999999999999 99999999999999999999999999999999999999999984 34556889999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~ 158 (1088)
+.+.+++.||.+|..+|.....+..++..+..|+.+|+.+.+++......++..+..++..|.. +.|...|..+++..
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988888999999999999999999999999999999999988875 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|+|+.++++.|++.+..|+|..|+.+|++++..+|...+.+++++|.|++++|+.+.|+..|.++++++|.++.++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1088)
.+.+...+...+..++..+.+++..+|.+|.+++.|+..|+..|+|..+..+...++..+...+..+++++++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC----CHHH
Q 001392 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1088)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1088)
|+|++|..+|..+++. .+..++.+++++|++|+..|+++.|+.+|+++++..|++.+++..||.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999886 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1088)
Q Consensus 395 A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a 474 (1088)
|..++.+++...|.+..+|+.++.++..++...++.+|..|+.++...+..+++++++++|..++..|++.+|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999888888889999999999988888899999999999999999999999999999
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH
Q 001392 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1088)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1088)
+....... ... .....+.++.||+|+++...+++..|...|..+++.
T Consensus 479 ~~~~~~~~--------------------------------n~d-e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVA--------------------------------NKD-EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhc--------------------------------Ccc-ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 87411000 000 002235778999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHH
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 633 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~a~~~ 633 (1088)
+|.++++|+++|.+....++..+|..+++.++..+..+|.+|..+|.+|++...|..|...|..++..... +|.|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988885443 59999999
Q ss_pred hhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001392 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1088)
Q Consensus 634 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1088)
|||+ |+...+...++++.+.+.+++|+++|.++|+.+|.|.+|.+|+|++++..|++.+|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9998 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
+++|+|+||||+.+|+|..||++|+.|+++|...+++.++.+||++|+..|++.+|+.++.+|+++.|.++.+.||+|++
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001392 794 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER-EEQQ 872 (1088)
Q Consensus 794 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~e~~ 872 (1088)
+++.+..+++..++|+++|..++.+|+.|+++|.+|+..++. +|+++.+.+++++|+++++++..|+.++++ .|++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998743 899999999999999999999999987765 4445
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCchhhhhhccCCCCccccc
Q 001392 873 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH 949 (1088)
Q Consensus 873 ~~~k~---e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1088)
.++|+ +.+++.++.+|++|++||++..++..+++++|.++..+.++.|.+..+.|+.+++..+++ .+++ .
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~---~~~~----~ 909 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKR---GDDS----D 909 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCC---CCcC----c
Confidence 54555 456666778889999999999999999998988888888889999999999998886443 1111 2
Q ss_pred cccccccCCcccccccCcCcc-ccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCCC
Q 001392 950 SEKRRRKGGKRRKKDKSSRSH-YETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAAAGLEDS 1026 (1088)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 1026 (1088)
+.-++|||||||||+++++.+ +..+++|.+.+++...+........+++++.+. ...+-+++++.++ ..+..+++++
T Consensus 910 ~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~~ 989 (1018)
T KOG2002|consen 910 SDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREASEESDRP 989 (1018)
T ss_pred ccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchhhccCCc
Confidence 444555555555553333333 344445667777777777776666665333222 2233344445555 8888999887
Q ss_pred -CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001392 1027 -DVDDEMAPSITAARRRRALSESDDDEPF 1054 (1088)
Q Consensus 1027 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1088)
|+|.|..+++. .||++++|.|||..++
T Consensus 990 ~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 990 IESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred cccccccCcccc-cccchhhccccccccc
Confidence 77777888888 9999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=531.81 Aligned_cols=699 Identities=21% Similarity=0.239 Sum_probs=514.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHH
Q 001392 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (1088)
Q Consensus 32 ~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~ 111 (1088)
++...|.....|+.+|..|+.+|++++|+.+++.++...+ ....++..++.++...|...
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~----------- 210 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIE----------- 210 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhcCCHH-----------
Confidence 4445666777888888888888888888888888765433 22345666777777766655
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
+|+..|.+++..+|.++.+++.++.+++..|++++|...|+.++...|+++.+++..|.+++..|++++|+..|++++..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
+|.. ...++.+|.++..+|++++|...|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 366 (899)
T TIGR02917 291 APEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAAL 366 (899)
T ss_pred CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 6665 33455556666666666666666666666666666555556665555555 5555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---------------
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--------------- 336 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------- 336 (1088)
..++.++...|++++|..++..++... |.....+..+|.++...|++++|+..|..++...+
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 555555555555555555555555332 33344444445444444444444444444332110
Q ss_pred ----------------CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 337 ----------------KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 337 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
..|.....+..+|.++...|++++|+.+|.+++..+|.+..++..++.++...|++++|+..|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455667788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001392 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1088)
Q Consensus 401 k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~ 479 (1088)
+++...|.+..++..++.++ ..|++++|+..+.+++...+. ....+..++.++...|++++|+..+++++...+
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888 888888888888888776433 356677788888888888888888888776432
Q ss_pred hhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc
Q 001392 480 WLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555 (1088)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 555 (1088)
... ............ ......+..+.. ..|.++.++..++.++...|++++|...|++++..+
T Consensus 599 ~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 599 DSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 110 000000000000 122233333322 456778888899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhh
Q 001392 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1088)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg 635 (1088)
|++..++..++.++...|++++|+.+++.+....|.++.++..+|.++...|++++|+..|.+++...|.. ..+..++
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~ 743 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLH 743 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887764 4555677
Q ss_pred hHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchh
Q 001392 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1088)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1088)
.+ |... |++++|...+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| +++.
T Consensus 744 ~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~ 805 (899)
T TIGR02917 744 RA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAV 805 (899)
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHH
Confidence 77 7777 8999999999999999999999999999999999999999999999999887 6788
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 795 (1088)
++.++|+++...|+ .+|+.+|++++.. .+.++.++..+|.+++..|++++|+.+|+++++.+|.++.++++++.++.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 99999999999999 8899999999987 56678888999999999999999999999999999999999999998765
Q ss_pred HHH
Q 001392 796 KFS 798 (1088)
Q Consensus 796 ~~~ 798 (1088)
+.+
T Consensus 883 ~~g 885 (899)
T TIGR02917 883 ATG 885 (899)
T ss_pred HcC
Confidence 544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=523.06 Aligned_cols=735 Identities=20% Similarity=0.212 Sum_probs=586.3
Q ss_pred CCCCChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh
Q 001392 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE 100 (1088)
Q Consensus 21 ~lp~~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~ 100 (1088)
+.......+..++...|.....|+.+|.+|+.+|++++|+..+++++...+.. ...+..++.+|...|...
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK---------NQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------hhhHHHHHHHHHHCCCHH
Confidence 44555667778888899999999999999999999999999999987654321 123333444444443322
Q ss_pred hhh------------------------hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 101 TKQ------------------------REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE 156 (1088)
Q Consensus 101 ~~~------------------------~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 156 (1088)
... -.+.+++++|...|++++..+|.++.+++.+|.+++..|++++|+..+++++.
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 100 01234456899999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
.+|.+..++..+|.+++..|++++|+..|++++..+|.+ +.+++.++.++...|++++|...+.++++..|+++.+++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYL 266 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999999999999999999999999999999999988 6778889999999999999999999999999998888888
Q ss_pred HHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 001392 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1088)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~ 316 (1088)
.+.++...|+ +++|+..|.+++..+|.+..++..++.+++..|+++.|...+..++... |....++..++.++.
T Consensus 267 ~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~ 340 (899)
T TIGR02917 267 KALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASIQL 340 (899)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence 8888888888 9999999999999999988888888999999999999999999888654 555678888899999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 001392 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (1088)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (1088)
..|++++|+..+..++. ..|.....+..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++|+
T Consensus 341 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 341 RLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence 99999999999998886 556677788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001392 397 ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475 (1088)
Q Consensus 397 ~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al 475 (1088)
..|.+++...|........++..+ ..|++++|+..+.++....+. .+.++..+|.++...|++++|+.+|.+++
T Consensus 418 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-----NASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988888888888888 889999999888887764332 46788889999999999999999999998
Q ss_pred hcchhhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 001392 476 GDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1088)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1088)
...+... ............ ......+..+.. ..|.+..++..++.++...|++++|..++.++
T Consensus 493 ~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 493 SIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred hhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7543111 000000000000 122233333332 45667777888888888888888888888888
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHH
Q 001392 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631 (1088)
Q Consensus 552 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~ 631 (1088)
+..+|.....+..++.++...|++++|+.+++.++...|.++.+|..+|.++...|++++|+..|++++...|. +..++
T Consensus 560 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 638 (899)
T TIGR02917 560 AELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALAL 638 (899)
T ss_pred HHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888777665 55666
Q ss_pred HHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC
Q 001392 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711 (1088)
Q Consensus 632 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~ 711 (1088)
..++.+ |... |++++|+.+|++++..+|++..++..++.++...|++++|+.++..+....|
T Consensus 639 ~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 700 (899)
T TIGR02917 639 LLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP----- 700 (899)
T ss_pred HHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----
Confidence 677777 7776 7888888888888888888888888888888888888888888888877776
Q ss_pred CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHH
Q 001392 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1088)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla 791 (1088)
..+.++..+|.+++..|++++|+..|+.++...+. ..++..++.++...|++.+|...+++++...|+++.+++++|
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS---SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56777888888888888888888888888876432 266777888888888888888888888888888888888777
Q ss_pred HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 792 VAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 792 ~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
.++... +..+.|..+|..+....
T Consensus 778 ~~~~~~-------------------g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 778 ELYLAQ-------------------KDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHC-------------------cCHHHHHHHHHHHHHhC
Confidence 765443 35788999999987654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=414.28 Aligned_cols=582 Identities=17% Similarity=0.166 Sum_probs=510.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1088)
++.|...|.-+++..|.+..+++++|.+.+..|+|..|+.+|..++..+|.. +...+++|.|+.+.|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 6689999999999999999999999999999999999999999999999976 567789999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 189 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
++++|.+ ..++..+|.+-.... .+..+...+.++...+|.||.++..|+..++..|+ +..+..+...++...-
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 677777777666554 57889999999999999999999999999999999 9999999999988764
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001392 266 YC---AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1088)
Q Consensus 266 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1088)
.. ...++.+|..|..+|+|++|..+|..++...+.+ ..-.++.+|..|...|+++.|...|.+++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 43 4559999999999999999999999999765443 356789999999999999999999999998 667888
Q ss_pred hhHhhHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 001392 343 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 413 (1088)
Q Consensus 343 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~-----~p~~~~~~ 413 (1088)
.+...+|.+|...+ ..+.|..++.+++...|.+..+|..++.+|....-+ .++.+|.+++.. .+--+..+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88999999999886 678899999999999999999999999998776544 449999888743 35568899
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccc
Q 001392 414 IDLGELL-ISSDTGAALDAFKTARTLLKK-A----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (1088)
Q Consensus 414 ~~la~l~-~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 487 (1088)
.++|.++ ..|++..|...|..+...... . +......+.++++.++-..+++..|...|...+.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 999999999999999987331 1 1123356789999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 001392 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567 (1088)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 567 (1088)
..|..+..+..+|.+....++..+|..++..++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 578899999999988888899999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHCC--CChhHHHhhhhhhhcc------------cchHHHHHHHHHhhhcCCCCChHHHHH
Q 001392 568 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 633 (1088)
Q Consensus 568 ~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~d~~a~~~ 633 (1088)
++.....+..|..-|...++.-. .++.+...||++++.. +.+.+|++.|.+++...|. +.|+-..
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999987777665433 3455667788877653 4578999999999999988 8899899
Q ss_pred hhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001392 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1088)
Q Consensus 634 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1088)
+|.+ +... |++..|..+|.++..--..++.+|.++|.||..+|+|..|+++|+.++...-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 9988 7777 999999999999998887888999999999999999999999999999987322 68
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 001392 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763 (1088)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~ 763 (1088)
+.++..||.+++..|.+.+|......++.. .|.++.+.+++|.+..+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 999999999999999999999999999998 567788888888877653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=442.83 Aligned_cols=652 Identities=14% Similarity=0.119 Sum_probs=532.4
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001392 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1088)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~ 116 (1088)
..+.+..+..++....+++.+.|.+.|.+++..+| +.+.++..++.+++..|+.. +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 45677889999999999999999999999887654 34667888888888888877 99999
Q ss_pred HHHHhhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001392 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1088)
++++++++|+++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|++.
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 66788899999999999999999999888754 2323333344569999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-------------
Q 001392 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1088)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1088)
+|+..|++++..+|.+ +.+++.+|.++...|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987655432221111000001111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHH
Q 001392 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1088)
Q Consensus 247 ----~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1088)
...+..|...+.+.....++.......++..+...|++++|+..|++++... |..+.++..+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 0113344444444333322222233456888999999999999999999764 667899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001392 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1088)
+|+.+|.+++...+..+.. ......+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999854332221 11234568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCCHHHH
Q 001392 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESA 467 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A 467 (1088)
+++|+.+|++++..+|.+..++..++.++..+++++|+.+++.+....+.. ........+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999995568899998887654332111 0011134567789999999999999
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHH
Q 001392 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (1088)
Q Consensus 468 ~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (1088)
+..|++++. ..|.++.+++.+|.+|...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 5678899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC----------hhHHHhhhhhhhcccchHHHHHHHH
Q 001392 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1088)
|++++..+|+++..++.++.++...+++++|+.+++++....... ......++..+...|++++|+.+++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998754322111 1123456788899999999999987
Q ss_pred HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHH
Q 001392 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1088)
Q Consensus 618 ~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 697 (1088)
..|. +...++.+|.+ |... |++++|+..|++++..+|.++.++.+++.++...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444 55667889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhhccHHHHHHHH
Q 001392 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 773 (1088)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~----~~~~l~~La~~~~~~g~~~~A~~~l 773 (1088)
|++++...| +++.++..+|.++..+|++++|+.+|+.++...+..+ ++.++..+|+++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998876 7788999999999999999999999999998754322 2456777899999999999999999
Q ss_pred HHHHH
Q 001392 774 LRAIH 778 (1088)
Q Consensus 774 ~~al~ 778 (1088)
++++.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=441.26 Aligned_cols=622 Identities=17% Similarity=0.088 Sum_probs=505.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
...+...+.++...++.+ .|...+.+++.++|+++.++..++.+++..|++++|...+++++..+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 445666777777766655 899999999999999999999999999999999999999999999999998
Q ss_pred HHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 163 ~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.+. +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678899999999999999999999988874322233344444569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----
Q 001392 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (1088)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---- 302 (1088)
+|+++.++..+|.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876544322211111111112222233333332222211111
Q ss_pred -------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
........+|.++...|++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1112223568899999999999999999998 567888999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001392 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1088)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~ 434 (1088)
+.+|++.. ....+|.++...|++++|+..|++++..+|.++.++..+|.++ ..|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99987642 2234578889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccC
Q 001392 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (1088)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1088)
++...|. ...++..++.++. .+++++|+.++..+....+. .....
T Consensus 411 aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-----------------------~~~~~------ 455 (1157)
T PRK11447 411 ALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-----------------------SIDDI------ 455 (1157)
T ss_pred HHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-----------------------HHHHH------
Confidence 9988554 3677888888875 46789999888765431100 00000
Q ss_pred CCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh
Q 001392 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1088)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 594 (1088)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|++++|+..|++++..+|.++.
T Consensus 456 -----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 456 -----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred -----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 001123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH---------HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~---------a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
+++.++.++...+++.+|+..++++.......... ..+.+++. +... |++++|+.+++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~ 597 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH
Confidence 99999999999999999999999865432221111 12334555 5555 89999998877
Q ss_pred HHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
.+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|...|++.+|+..|+.++..
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999999999998 78999999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
.+.++.++..+|.++...|++++|..+|++++...|.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 5566888999999999999999999999999999887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=379.31 Aligned_cols=447 Identities=20% Similarity=0.275 Sum_probs=429.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
-|+|.+|.++.+.....||.+...+..++.++++..+++.....-..+++.+|....++-.+|.++..+|+++.|+.+|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
.++++.|+. .+.|+++|.|+...|+.+.|..+|..+++++|....+...+|.+....|. ..+|..+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 88899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
...+|..||.++...|+...|+..|++++... |....+|+++|.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 99999999999999999999999999999664 77779999999999999999999999999998 6789999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~ 425 (1088)
++|.+|+.+|..+-||.+|++++...|+.+.++.+||.++...|+..+|..+|.+++.+.|+.+.+..+||.++ +.|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001392 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1088)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1088)
+.|..+|.+++...|.. ....+++|.+|-+.|++++|+.+|++++.
T Consensus 371 e~A~~ly~~al~v~p~~-----aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF-----AAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhh-----hhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 99999999999998774 78899999999999999999999999998
Q ss_pred hhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
+.|..+.++.++|.+|..+|+...|+..|.+++..+|..++++.+||.+|...|+..+|+..|+.+
T Consensus 417 --------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 417 --------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred --------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCChhHHHhhhhhhhcccchHH
Q 001392 586 LKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
+++.|+.++++.++..++.-..+|..
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999888766655544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=375.32 Aligned_cols=462 Identities=20% Similarity=0.255 Sum_probs=343.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1088)
+......+.++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ..++-++|
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHH
Confidence 33444466667777777777777777777777777777777777777777777777777767777777766 56666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
.++...|++..|+..|+.++++.|++.++|.++|.++...|+ ...|..+|..+++++|...
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~---------------- 184 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLY---------------- 184 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchh----------------
Confidence 777777777777777777777777777777777777776666 6666666666666665443
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1088)
.+...+|..+...|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..
T Consensus 185 ---------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 185 ---------------------CARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred ---------------------hhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHH
Confidence 3334456666666666666666666665 4455555666666666666666666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
|+++++++|+...+|++||.+|...+.++.|+..|.+++.+.|++.
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---------------------------------- 286 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---------------------------------- 286 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch----------------------------------
Confidence 6666666666666666666666666666666666666655555544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc
Q 001392 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1088)
.++.++|.+|+..|..+.|+..|++++. ..|..
T Consensus 287 ----~a~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F 319 (966)
T KOG4626|consen 287 ----VAHGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNF 319 (966)
T ss_pred ----hhccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCc
Confidence 4555566666666777777777777776 56777
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
+.++.++|.++...|+..+|..+|.+++..+|+++++.++||.++..+|.++.|..+|.+++..+|....++.++|.+|.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Q 001392 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 684 (1088)
++|++++|+..|+.++++.|. -..++..+|+. |-.. |+...|++.|.+++..+|....+..+||.+
T Consensus 400 qqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hcccHHHHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 888888888888888888776 56677788888 8888 999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCH
Q 001392 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 730 (1088)
Q Consensus 685 l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~ 730 (1088)
|...|+..+|+..|+.++...| +.++++.|+++|+.--.++
T Consensus 466 ~kDsGni~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hhccCCcHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999998 8899999999988665443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=372.82 Aligned_cols=663 Identities=11% Similarity=0.004 Sum_probs=515.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
....+..|..+...|++++|+..|+.++..+|+ ...++..|+.+|+.+|+.. +|+..+++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------n~~~~~~LA~~yl~~g~~~-----------~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPD---------NIPLTLYLAEAYRHFGHDD-----------RARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHH-----------HHHHHHHH
Confidence 347788888888889999999999999877653 3667899999999999877 89999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHh
Q 001392 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~ 191 (1088)
+++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.+ |.+.+...+++. .+.+..
T Consensus 104 Av~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 104 QLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 999999988888877666 999999999999999999999999999998 555555555554 333333
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
+|.. ..+.+.++.+|..+|+++.|+..+.++++..|.+...+..|+.+|... ++ +.++.++...++ .++.+
T Consensus 178 ~~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~d~~l 249 (987)
T PRK09782 178 SPEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---TDPQS 249 (987)
T ss_pred CCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---cCHHH
Confidence 3333 556777799999999999999999999999999999999999988873 43 666666554322 78889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
+..++..|...|+.+.|..++...-......|......+.+++..... ..|...|.+= ..+....+...++.
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~ 321 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHH
Confidence 999999999999999999999987766666666666677766654332 2233333331 22445556667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
.+...+.+..+..+ +...|.++. ...........+.+.++...+..+.+..|.+...+..++.+. ..|+..+|.
T Consensus 322 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 322 VLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 99999999955533 455676664 222222334557888999999999998899999999999999 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcc--hhhhhcccccchhhhhhhhhHHHhhh
Q 001392 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGDG--IWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~l~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
..|+.+... +. ....+..+...++.+|...+. ...+..+...+-... .|..-... ....
T Consensus 397 ~~~~~~~~~-~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~ 460 (987)
T PRK09782 397 DLLLQRYPF-QG-DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG--------------IADN 460 (987)
T ss_pred HHHHHhcCC-Cc-ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh--------------hhhh
Confidence 999998875 22 122245677789999998877 444433321111100 00000000 0000
Q ss_pred hhhhhhhccCCCCcCCCCc--chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
...+.. .+...|. .+.+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++|+..|
T Consensus 461 ~~~~~~------al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 461 CPAIVR------LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred HHHHHH------hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHH
Confidence 011111 1114466 88999999999998 899999999999999999854 4666777788999999999999
Q ss_pred HHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHH
Q 001392 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662 (1088)
Q Consensus 583 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 662 (1088)
++++...|. ...+..+|.++...|++.+|...|.+++...|.. ......++.. .... |++++|+.
T Consensus 533 rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~-l~~~------------Gr~~eAl~ 597 (987)
T PRK09782 533 QKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQ-RYIP------------GQPELALN 597 (987)
T ss_pred HHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHH-HHhC------------CCHHHHHH
Confidence 998777555 4567889999999999999999999999987663 3333333333 3334 89999999
Q ss_pred HHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001392 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742 (1088)
Q Consensus 663 ~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~ 742 (1088)
.|++++..+|+ +.++.++|.++.+.|++++|+..|++++...| +++.++.++|.++...|++++|+..|++++.
T Consensus 598 ~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 598 DLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999996 89999999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHH
Q 001392 743 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1088)
Q Consensus 743 ~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~ 796 (1088)
. .|.++.+++.+|.++...|++++|+..|++++.+.|++..+.+-++.+.+.
T Consensus 672 l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 672 G--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 8 677899999999999999999999999999999999999998888876443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=353.11 Aligned_cols=650 Identities=12% Similarity=0.020 Sum_probs=504.8
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhh
Q 001392 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 104 (1088)
Q Consensus 25 ~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~ 104 (1088)
--..+..+|...|.+..+++.+|.+|..+|++++|+..+++++..++.. ...+..|+.+ +
T Consensus 63 A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n---------~~~~~~La~i----~------- 122 (987)
T PRK09782 63 AIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD---------ARLERSLAAI----P------- 122 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHh----c-------
Confidence 3456677788899999999999999999999999999999998876532 2233334443 3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
++.+|+..|++++..+|.+..+++.++.. |.+.+....|+. .+.+..+|......+.++.+|..+|
T Consensus 123 ----~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 123 ----VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ----cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 34489999999999999999999999998 666655555554 3333334445556777799999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~ 255 (1088)
+|++|+..+.++++..|.+ ...+..++.+|.. +++ +.+..++...++ .++.++..++..+...|+ .++|..
T Consensus 197 dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~~A~~ 268 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KARLQH 268 (987)
T ss_pred CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HHHHHH
Confidence 9999999999999999999 6668889999888 577 888888765333 788999999999999999 666665
Q ss_pred HHHH---HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 256 KMQR---AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 256 ~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+.+ +...+|.+..-++.++...... ..+..-+.. . ..+.....+..+...+...++++-+..+ +
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 336 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTV--Q---FADNRQYVVGATLPVLLKEGQYDAAQKL----L 336 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhh--h---hHHHHHHHHHHHHHHHHhccHHHHHHHH----h
Confidence 5554 4444566666666666543321 111111111 0 0122224455567888888988855544 1
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---C
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---D 409 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~---~ 409 (1088)
. ..|.... ...........+.+.++...+...++..|.+...+..++....+.|+..+|...|+.++...++ +
T Consensus 337 ~---~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 337 A---TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred c---CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 1 1233322 2222222334578888888888888888999999999999999999999999999999875322 2
Q ss_pred HHHHHHHHHHH-hcCC---HHHH----------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001392 410 AQAFIDLGELL-ISSD---TGAA----------------------LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1088)
Q Consensus 410 ~~~~~~la~l~-~~~~---~~~A----------------------~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (1088)
......++.+| .... ...+ ...+..+....+..+....+.+++++|.++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 33444777777 4433 2222 33334444444332211267899999999988 89
Q ss_pred HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHH
Q 001392 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 543 (1088)
Q Consensus 464 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 543 (1088)
+.+|+..|.+++.. .|.. .....+|.++...|++++
T Consensus 492 ~~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 492 PGVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred cHHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCHHH
Confidence 99999999999873 3433 236667788889999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 544 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 544 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
|+..|++++...|. ...++.+|.++...|++.+|..++.+++..+|.+...+..++......|++++|...|++++...
T Consensus 528 Ai~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 528 ALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999998776555 45678899999999999999999999999999998888777777777899999999999999998
Q ss_pred CCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHH
Q 001392 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703 (1088)
Q Consensus 624 ~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~ 703 (1088)
|. ..++..+|.+ +... |++++|+..|++++..+|+++.+++++|.++...|++++|+.+|+++++
T Consensus 607 P~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 607 PS--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred CC--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 85 6677888988 8888 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 704 ~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
..| +++.+++++|.++..+|++++|+..|++++.. .|.++.+....|.+.....++..|.+.+.++..++|..
T Consensus 672 l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 672 GLP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred hCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 998 88999999999999999999999999999998 67778999999999999999999999999999999977
Q ss_pred hhHHhHHHHH
Q 001392 784 YTLRFDAGVA 793 (1088)
Q Consensus 784 ~~~~~nla~~ 793 (1088)
. +...++-+
T Consensus 745 ~-a~~~~g~~ 753 (987)
T PRK09782 745 S-IGLRSGAM 753 (987)
T ss_pred h-hccccchH
Confidence 6 55555443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=340.84 Aligned_cols=671 Identities=13% Similarity=0.055 Sum_probs=549.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHH
Q 001392 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1088)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1088)
..+.+...+..+...|++.|++.+|..+|..+......+ ....+..+...+...+.. ..|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~-----------~~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAV-----------EEGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCH-----------HHHH
Confidence 345667789999999999999999999999986543211 112334444444444443 3788
Q ss_pred HHHHHHhhcCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 115 ~~~~~a~~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
.++..+++..+. +......+...|.+.|+++.|...|+.+. +.+..+|..+...|.+.|++++|+.+|.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888888877653 34455667778899999999999999874 45778999999999999999999999999987542
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
.....++..+...+...+++..+...+..++.... .+...+..|...|.+.|+ ++.|...|.+.. ..+...|+
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n 257 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWN 257 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhH
Confidence 22245566677778888999999999998887643 256677888889999998 999999999754 34668899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.+...|...|++.+|..+|..+.... ...+..++..+..++...|+.+.|.+++..+.+. .......++..+...|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHH
Confidence 99999999999999999999998653 2334577888889999999999999999999864 3344567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
.+.|++++|...|+.+.. .+...|..+...|.+.|++++|+.+|.++.... |+.. .+..+...+ ..|+++.|.
T Consensus 334 ~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 999999999999998743 467789999999999999999999999987654 6554 444444566 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001392 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
.++..+.+. +...+..+++.+...|.+.|++++|...|.++..
T Consensus 410 ~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 410 KLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 999887764 4455678999999999999999999999987643
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
.+..+|..+...|...|+..+|+.+|.+++...+.+..++..+...+...|..+.+..++..+++..
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 2556888999999999999999999999987656667888888889999999999999999998875
Q ss_pred -CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH
Q 001392 590 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1088)
Q Consensus 590 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 668 (1088)
..+..+...+..+|.+.|++++|...|..+ ..+..+|..|... |... |+.++|+.+|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 344557788999999999999999999976 3478889999988 9988 99999999999999
Q ss_pred hcCCC-CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC
Q 001392 669 VQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (1088)
Q Consensus 669 ~~~p~-~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~ 747 (1088)
..+.. +..+++.+...+.+.|.+++|..+|..+.+..+-. .+...|..+..+|.+.|++++|.++++.+ +..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 86532 67778888889999999999999999999655311 25678999999999999999999998876 356
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 001392 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 827 (1088)
Q Consensus 748 ~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~ 827 (1088)
+++.+|..|..+|...|+.+.+....++++++.|+++..+..++.+|... +.+++|.++++
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~-------------------g~~~~a~~vr~ 715 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA-------------------GKWDEVARVRK 715 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC-------------------CChHHHHHHHH
Confidence 78999999999999999999999999999999999999888888875443 35788888888
Q ss_pred HHhhCCCC
Q 001392 828 HLSAASNL 835 (1088)
Q Consensus 828 ~l~~~~~~ 835 (1088)
.+...+-.
T Consensus 716 ~M~~~g~~ 723 (857)
T PLN03077 716 TMRENGLT 723 (857)
T ss_pred HHHHcCCC
Confidence 88776544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=320.16 Aligned_cols=436 Identities=16% Similarity=0.135 Sum_probs=350.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+..+|..++..|+|++|+..|.+++...|+ +..+..+|.+|...|+|++|+..|.+++.++|++ ..+++.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 45678899999999999999999999999995 7789999999999999999999999999999999 778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1088)
.+|++++|+..|..++..++.+......+....+ ...+...+..++...|.+...+..++.++... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998888776654433222211111 12344556667777887766666666654221 111111
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 289 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
..+.... ...+.....+..++..+ ...+.|++|+..|.+++......|....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1122111 12233334445555443 34578999999999999743335677788999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
++++..+|.+..++..+|.++...|++++|+..|.+++..+|+++.+++.+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999987654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc
Q 001392 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1088)
....+.++|.++...|++++|+..|.+++. ..|.+
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 477888999999999999999999999987 45778
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH------HHHHH-HHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la-~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
+.+++.+|.++...|++++|+..|.+++...|..... ++..+ .++...|++++|+.++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999988864322 22222 2334469999999999999999999999999
Q ss_pred hhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 598 MLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
.+|.++...|++++|+..|++++.+.+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-30 Score=322.93 Aligned_cols=641 Identities=14% Similarity=0.057 Sum_probs=533.3
Q ss_pred ChHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001392 25 DASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1088)
Q Consensus 25 ~~~~l~~~L~~e--~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1088)
++..++..+... +.+...|..+...+..++.+..+..++..++...+.. .+.+.+.|...|.+.|...
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~n~li~~~~~~g~~~-- 138 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL--------GVRLGNAMLSMFVRFGELV-- 138 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHhCCChH--
Confidence 444444444443 3456678888899999999999999999876553321 2346677888888888876
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Q 001392 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDS 181 (1088)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A 181 (1088)
.|..+|.++.. .+..+|..+...|.+.|++++|+..|..+.... ..+...+..+...+...+++..+
T Consensus 139 ---------~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 139 ---------HAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred ---------HHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 89999998853 467899999999999999999999999998643 23556666666777888999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
..++..++.........++..+..+|.+.|+++.|...|.++.. .+...|..+...|.+.|+ +.+|+..|.+..
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~ 280 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 99999998876544467788899999999999999999998643 356778899999999999 999999999998
Q ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001392 262 EIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1088)
Q Consensus 262 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1088)
... ..+..++..+...+...|+.+.+.+++..+.... ...+..++..+...|...|++++|..+|..+.. .
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~ 352 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------K 352 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------C
Confidence 753 3356778888889999999999999999988753 344568899999999999999999999998642 3
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001392 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLG 417 (1088)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la 417 (1088)
+..+|..+...|.+.|++++|+.+|..+.... |+ ..++..+...+...|+++.|..++..+.+.. ..+..++..|.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45679999999999999999999999987654 44 4566666778899999999999999999875 34677888899
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001392 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1088)
Q Consensus 418 ~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1088)
..| ..|++++|...|+++.. .+...|+.+...|...|++.+|+.+|.+++..
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------- 484 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------- 484 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-------------------
Confidence 999 99999999999987532 24678999999999999999999999999752
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCCh
Q 001392 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNL 575 (1088)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 575 (1088)
..| +..++..+..++...|..+.+..++..+++.. ..+...+..+..+|.+.|++
T Consensus 485 -----------------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 485 -----------------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred -----------------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 233 55666677778889999999999999998754 23456778889999999999
Q ss_pred HHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHH
Q 001392 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655 (1088)
Q Consensus 576 ~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~ 655 (1088)
++|...|..+ +.+..+|..+...|.+.|+.++|+.+|+++...+..++..++..+... |... |
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g 603 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------G 603 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------C
Confidence 9999999886 567889999999999999999999999999998777788888888777 8888 9
Q ss_pred HHHHHHHHHHHHHhcC--CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHH
Q 001392 656 HLEKAKELYTRVIVQH--TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1088)
Q Consensus 656 ~~~~A~~~~~~al~~~--p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (1088)
.+++|..+|+.+.... ..+...+..+..+|.+.|++++|..+++++. .. .++.+|..|...+...|+.+.|
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999998543 2367889999999999999999999999873 22 3578899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 734 i~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
....+++++. .|.++..+..|+.+|...|+|++|.++.+.+...
T Consensus 677 e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 677 ELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999987 6777889999999999999999999999888764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=318.03 Aligned_cols=444 Identities=17% Similarity=0.131 Sum_probs=362.6
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1088)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1088)
.+..+|..|+..|+ |.+|+.+|++++...|+ +..+..+|.+|+..|++++|+..|.+++..+|++..+
T Consensus 129 ~~k~~G~~~~~~~~-----------~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a 196 (615)
T TIGR00990 129 KLKEKGNKAYRNKD-----------FNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196 (615)
T ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH
Confidence 45556666665555 45999999999999995 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
++.+|.++...|+|++|+..|..++...+.........+...+ ...+......++...|.+...+..++..+...
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 9999999999999999999999888776655222111111111 13455667777788888777777666654322
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1088)
. ...+...+......+|.....+..++..+. ..+.|++|+..|+.++......|....++..+|.++...|++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 272 R----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred c----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 1 222233344555566665555555554433 357899999999999987655677788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 401 (1088)
++|+..|.+++. ..|....+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++
T Consensus 348 ~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 348 LEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998 67888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001392 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1088)
Q Consensus 402 ~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~ 480 (1088)
++.++|++..+++.+|.++ ..|++++|+..|++++...|. .+.+++.+|.++...|++++|+..|.+++...+.
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999 999999999999999987654 4789999999999999999999999999985321
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHH-HHHHhcCCHHHHHHHHHHHHHHcCCcH
Q 001392 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA-RLLEQIHDTVAASVLYRLILFKYQDYV 559 (1088)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (1088)
.. ........+...+ .++...|++++|+.+|++++..+|++.
T Consensus 500 ~~-------------------------------------~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 500 TK-------------------------------------PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred cc-------------------------------------cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 00 0001122223333 334457999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh
Q 001392 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1088)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 594 (1088)
.++..+|.++...|++++|+.+|++++.+.+....
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999876544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-28 Score=273.21 Aligned_cols=670 Identities=17% Similarity=0.172 Sum_probs=374.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
+.-.+..|+..+-+|++++|+.++.+++..++. ....+.+||.+|-.+|..+ ++....-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 446677777777778888888888877766542 2446777777777777666 77777777
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---
Q 001392 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--- 196 (1088)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--- 196 (1088)
|..++|++...|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|++..|+..|.+++...|...
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 77778888888888888888888888888888888888888877778888888888888888888888888777331
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH--hCC------
Q 001392 197 -GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--IYP------ 265 (1088)
Q Consensus 197 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~--~~p------ 265 (1088)
...-...+..+...++-+.|+..++.++.... ...+.+..++.+++.... ++.|+..+..... ..+
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 12223446666677777777777777776322 123345566666666555 6666655544433 000
Q ss_pred --------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001392 266 --------------------YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1088)
Q Consensus 266 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1088)
.+..+ ..+..++......+....+........-.....+..++.++.+|...|.+..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 01111 122333333333333333333333222123344556666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
.+|..++.. ....+...|+.+|.||..+|.++.|+++|++++...|++..+...|+.++.++|+.++|.+.+..+..-
T Consensus 435 ~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 666666542 112234456666666666666666666666666666666666666666666666666666666654422
Q ss_pred CCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHH
Q 001392 406 DPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLN--NIGVIHFEKGEFESAHQSFKD 473 (1088)
Q Consensus 406 ~p~---------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~l~~ 473 (1088)
++. ..........++ ..|+.++=+.....++..+....... +.... ..+......+.+..-......
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f-~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIF-PRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHhhccccccccchhHHHHHH
Confidence 211 122233333444 45555443332222222111100000 00000 000000001111111111111
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC---CCcCCCCcch----HHHHhHHHHHHhcCCHHHHHH
Q 001392 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG---NHVELPWNKV----TVLFNLARLLEQIHDTVAASV 546 (1088)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~ 546 (1088)
+..... +.....+-...+ .......... .....+..++.+.+++.+|..
T Consensus 592 ~~~k~~------------------------~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 592 AREKAT------------------------DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred HHhccC------------------------chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 111000 000000000000 0000111122 344456778889999999999
Q ss_pred HHHHHHHHcCC--cH----HHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCChhHHHhhhhhhhcccchHHHHHH
Q 001392 547 LYRLILFKYQD--YV----DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKET 615 (1088)
Q Consensus 547 ~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (1088)
+...++...-- +. ..-+....+.+..+++..|..+++.++.. +|..+.+|...-.+....++-.--...
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888764321 11 22233344566789999999999999888 666666666433344444544333444
Q ss_pred HHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcC------
Q 001392 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG------ 689 (1088)
Q Consensus 616 ~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g------ 689 (1088)
+..++...+..+++..+..|.. .+.. +.+.-|+..|-++...+|++|.....+|.++.+..
T Consensus 728 ~~~~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~ 794 (895)
T KOG2076|consen 728 IMRLLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVS 794 (895)
T ss_pred HHHHhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555445444445665 6666 88999999999999999999988888887776531
Q ss_pred ----CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC--------CCC--HHHHHH
Q 001392 690 ----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY--------NTD--AQILLY 755 (1088)
Q Consensus 690 ----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~--------~~~--~~~l~~ 755 (1088)
..-.++.++.+..+.-... ....+.+|+|.+|...|-..-|+.+|+++|...|. .-+ -.+-++
T Consensus 795 ~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N 871 (895)
T KOG2076|consen 795 NRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN 871 (895)
T ss_pred hhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence 2234445554444433211 24556677777777777777777777777665321 111 445566
Q ss_pred HHHHHHhhccHHHHHHHHHHH
Q 001392 756 LARTHYEAEQWQDCKKSLLRA 776 (1088)
Q Consensus 756 La~~~~~~g~~~~A~~~l~~a 776 (1088)
|..+|...|+..-|.+++.+-
T Consensus 872 L~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 872 LHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred hhhhhccCCcHHHHHHHHHhh
Confidence 666666667766666666543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-26 Score=248.55 Aligned_cols=598 Identities=16% Similarity=0.133 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
-++..+|..++....+.+|.+|..|+.-|.+--..|++..|..+..+-....|.+...|+.-+ ++...+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999998888887654 3445566666667
Q ss_pred HHHHhCCCChhHHHHHHHH---------------------------HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGL---------------------------CRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.++...|.+ ..+|+..+. ....+...+.|+..+.++++..|.+.+.|..|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 777777766 444433222 2223344555666666666666666666666665
Q ss_pred HHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHh
Q 001392 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHS 317 (1088)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~la~~~~~ 317 (1088)
+.. |..|...++++-+.-|.++.+|..-+.+--..|+.+.+.++..+.+.... ....+.+.|+.-+..+..
T Consensus 419 Let-------YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LET-------YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHH-------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 422 66666777777777777777777777777777777777777776664322 223344566666666666
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 001392 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1088)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1088)
.|..-.+..+....+...-...+.-..|..-++.+.+.+.++-|+..|..+++.+|....+|...+.+-...|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 66666666666655543334445555677777777777777777777777777777777777777776666777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 398 ~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+|++++...|.....|+..+..+ ..|+...|..++..++...|. +.+++..-..+.+....++.|..+|.++-.
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777777777777777776 677777777777777766443 356666666677777777777777777665
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 001392 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1088)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1088)
.. ....+|+.-+.+...+++.++|+.+++.+++.+|
T Consensus 647 ~s--------------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 IS--------------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cC--------------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 32 2445666666676777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhh
Q 001392 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 636 (1088)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~ 636 (1088)
++...|+.+|.++..+++.+.|...|...++.-|.++.+|..++.+-.+.|....|..+|.++.-.+|+ +...|+....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777666 3333322222
Q ss_pred HHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 001392 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (1088)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (1088)
+ =+.. |+.+.|..+..++|+..|++...|..-..+.-+-++-..++..+++.- .++.+
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce---------~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE---------HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc---------CCchh
Confidence 2 1222 777777777777777777766666555555555555444444444431 45677
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHH
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nl 790 (1088)
++..|..++...++++|.+.|+++++..+ .+..++.++-..+...|.-++-..+|.+.....|.+...+-.+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 77777777777777777777777777733 3344444555566667777777777777777777665544433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-27 Score=266.57 Aligned_cols=651 Identities=15% Similarity=0.097 Sum_probs=459.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
|++++|+.++..+++++|.++.+|+.+|.+|-++|+.+++..++-.+-.++|++...|..++.....+|++..|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HH-HHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV----EA-LVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a-~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
+++.+|.+ ....+..+.+|.++|++..|...|.+++.+.|... .. ....+..+...++ -+.|++.+..++.
T Consensus 233 AI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s 308 (895)
T KOG2076|consen 233 AIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALS 308 (895)
T ss_pred HHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHh
Confidence 99999999 66788899999999999999999999999999321 11 2223445555555 5888888888888
Q ss_pred h--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------hcCC----CCCchHHHHHHHHH
Q 001392 263 I--YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------VTNH----GPTKSHSYYNLARS 314 (1088)
Q Consensus 263 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~~~~----~~~~~~~~~~la~~ 314 (1088)
. +--....++.++.+|....+++.+......... .... .+....+...++.+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 3 333456678899999999999999888777665 1110 11112224455555
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCCHH
Q 001392 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIE 393 (1088)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~ 393 (1088)
....+...+++..+..-- .-.....+..++.++..+...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++
T Consensus 389 ~L~~~e~~e~ll~~l~~~--n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED--NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred cccccchHHHHHHHHHHh--cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 555566666655554322 1124556778999999999999999999999999886543 4679999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001392 394 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 394 ~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
.|+..|.+++...|++..+.+.|+.++ ..|++++|++.+.....-. +...-.....+......+++..|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999 9999999999988755221 11111223567788899999999999855
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 548 (1088)
.....++........+-. . .+. .+.. .......+........+.......++........
T Consensus 547 ~t~~~Lv~~~~~~~~~f~-----------~---~~k----~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l 606 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFP-----------R---NKK----KRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL 606 (895)
T ss_pred HHHHHHHHHHHHHHHhcc-----------h---HHH----HHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcc
Confidence 555555442111000000 0 000 0000 0000012333444444545444444432222211
Q ss_pred HHH-----HHHcCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--CCh----hHHHhhhhhhhcccchHHHH
Q 001392 549 RLI-----LFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYP----NALSMLGDLELKNDDWVKAK 613 (1088)
Q Consensus 549 ~~~-----l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~----~~~~~l~~~~~~~g~~~~A~ 613 (1088)
... .....-. ...+..+..++.+.+.+++|..++..++...- .+. ...+....+-+..+++..|.
T Consensus 607 ~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~ 686 (895)
T KOG2076|consen 607 SDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAF 686 (895)
T ss_pred cchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 111 1111112 24455666778899999999999998887642 122 23344445567789999999
Q ss_pred HHHHHhhhcCCC-CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC-HHHHhhHHHHHHhcCCc
Q 001392 614 ETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQF 691 (1088)
Q Consensus 614 ~~~~~al~~~~~-~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~l~~~g~~ 691 (1088)
.+++.++....- .+++ ...+.++.+...... ++-.-=..++..++..+|.+ +......|..+...+.+
T Consensus 687 ~~lR~~i~~~~~~~~~~-q~~l~n~~~s~~~~~---------~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~ 756 (895)
T KOG2076|consen 687 SYLRSVITQFQFYLDVY-QLNLWNLDFSYFSKY---------GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASF 756 (895)
T ss_pred HHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhccCccCCcceeeeechhHhhccch
Confidence 999988875211 1222 112233101111000 44444455566677778887 66667779999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc--c--------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ--G--------NFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~--g--------~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 761 (1088)
.-|+..|.++....| ++|-+-+.+|..+..+ + ..-+++.++.+..+.-.......++|++|++|.
T Consensus 757 ~~Al~~y~ra~~~~p-----d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 757 KHALQEYMRAFRQNP-----DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred HHHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 999999999999998 6677766666555432 2 234556665555544212224789999999999
Q ss_pred hhccHHHHHHHHHHHHHhCCCC------------hhHHhHHHHHHHHHHH
Q 001392 762 EAEQWQDCKKSLLRAIHLAPSN------------YTLRFDAGVAMQKFSA 799 (1088)
Q Consensus 762 ~~g~~~~A~~~l~~al~~~p~~------------~~~~~nla~~~~~~~~ 799 (1088)
..|-..-|+.+|++++.+.|.+ ..+.||+.++|+.-++
T Consensus 832 ~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn 881 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGN 881 (895)
T ss_pred HcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCc
Confidence 9999999999999999998743 3578999999887765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-24 Score=232.47 Aligned_cols=597 Identities=13% Similarity=0.100 Sum_probs=500.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHH
Q 001392 34 KAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1088)
Q Consensus 34 ~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A 113 (1088)
+..|..+..|+.-|+.--..|++..|..++.++.+.++.. + .+|+..-+.. ..+.|
T Consensus 279 etnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-------e---------DvWLeaiRLh--------p~d~a 334 (913)
T KOG0495|consen 279 ETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-------E---------DVWLEAIRLH--------PPDVA 334 (913)
T ss_pred hcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-------H---------HHHHHHHhcC--------ChHHH
Confidence 3466778899999999999999999999999998876632 1 1122222211 11257
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+..++++..|+++..|+..+.+-.. ...=...+.+++...|++...|-. .....+.+.|..++.++.+..|
T Consensus 335 K~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAveccp 407 (913)
T KOG0495|consen 335 KTVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECCP 407 (913)
T ss_pred HHHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhcc
Confidence 788889999999999999987766443 344567899999999998877653 3456777889999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh---C--CCCH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI---Y--PYCA 268 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~---~--p~~~ 268 (1088)
.+ ..+|+ +|.++.-|+.|...+.++-+.-|.+...|..-+.+.-..|+ .+....++.+.+.. + .-+.
T Consensus 408 ~s-~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~r 479 (913)
T KOG0495|consen 408 QS-MDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEINR 479 (913)
T ss_pred ch-HHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeecH
Confidence 98 55554 45566789999999999999999999999999999999988 55555555555432 1 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1088)
..|..-|..+-..|..-.+..+....+...-........|..-+..+...+-++-|..+|..+++ -.|.....|...
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq---vfp~k~slWlra 556 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ---VFPCKKSLWLRA 556 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh---hccchhHHHHHH
Confidence 67777788888888888888888888877666677778999999999999999999999999998 445666678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~ 427 (1088)
+..-..-|..+.-..+|++++...|.....|...+..+...|+...|..++..++..+|++..+|+.-..+. ....++.
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 888888899999999999999999999999999999999999999999999999999999999999988888 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
|..+|.++....+ ...+|..-+.+...+++.++|+.+++++++
T Consensus 637 aR~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk------------------------------- 679 (913)
T KOG0495|consen 637 ARDLLAKARSISG------TERVWMKSANLERYLDNVEEALRLLEEALK------------------------------- 679 (913)
T ss_pred HHHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHH-------------------------------
Confidence 9999999887433 368888889999999999999999999998
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 587 (1088)
..|....+|..+|.++..+++.+.|...|...++..|..+..|+.|+.+-...|..-.|...+.++.-
T Consensus 680 ------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 680 ------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred ------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 588 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
.||.+..+|.....+-++.|+.+.|.....++++..|++.. .| ...+ ++.. +. ++-. .+..+
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-LW--aEaI-~le~-~~---------~rkT----ks~DA 809 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LW--AEAI-WLEP-RP---------QRKT----KSIDA 809 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-hH--HHHH-Hhcc-Cc---------ccch----HHHHH
Confidence 99999999999999999999999999999999999987332 11 1111 2221 10 2222 23345
Q ss_pred HhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 668 l~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
++....|+..+..+|.++....++++|.++|.+++...| ++.++|..+-..+...|.-+.-.++|..|...-
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 556677888999999999999999999999999999998 889999999999999999999999999988763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-26 Score=285.61 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=334.6
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
+.++.. .+..|-++........++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++...|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555 5566777777777888888999999999999999888888888899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
.+ +.++..+|.++...|++++|+..+++++...|++.. +..+|.++...|+ +.+|+..+++++..+|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 667889999999999999999999999999999999 9999999999888 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHhcCCCCCchh-
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFIF- 343 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~~~- 343 (1088)
++.++...+..+.|+..++.+...+.. ..........+.+.+.. .+++ ++|+..|+.++...+..|....
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999898888766531100 00001122222333322 2334 7888899988865444443321
Q ss_pred ---hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 001392 344 ---PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 415 (1088)
Q Consensus 344 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~----~~~~~~ 415 (1088)
+.+.....+...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 222212344677999999999999988764322 344446889999999999999999999888765 355666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcC--------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001392 416 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (1088)
Q Consensus 416 la~l~-~~~~~~~A~~~~~~a~~~~~~~~--------~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~ 484 (1088)
++.++ ..+++++|+..+..+....|... .+. ...++..++.++...|++++|+..|++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 88999999999998887654210 011 134566778888888888888888888876
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHH
Q 001392 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (1088)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (1088)
..|.++.+++.+|.++...|++++|+..+++++..+|++..+++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 456777888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 565 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
++.++...|++++|...++.++...|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888888888888888876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-25 Score=270.14 Aligned_cols=325 Identities=11% Similarity=0.019 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.|++.+|..++..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
+++..+|.+ ..++..+|.++...|++++|+..+.+++...|+++.++..++. +...|+ +.+|+..+.+++..+|.
T Consensus 135 ~Al~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 135 QAWLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCC
Confidence 999999999 7789999999999999999999999999999999988877644 677788 99999999999998763
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCCc
Q 001392 267 -CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEF 341 (1088)
Q Consensus 267 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~ 341 (1088)
.......++.++...|++++|+..+..++... |..+.+++.+|.++...|++++ |+..|.+++. ..|..
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~ 283 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDN 283 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCC
Confidence 44455667888999999999999999999754 6778999999999999999986 8999999998 56788
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~- 420 (1088)
..++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|.+++..+|.+...+..++.++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc
Q 001392 421 ISSDTGAALDAFKTARTLLKKA 442 (1088)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~ 442 (1088)
..|++++|+..|++++...|..
T Consensus 364 ~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999987764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-25 Score=268.84 Aligned_cols=336 Identities=13% Similarity=0.047 Sum_probs=240.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
.+.......+..++..|++.+|+..+..++...|.++.++..+|.+....|++++|+..|++++..+|++ +.++..+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Confidence 3445566678888999999999999999999999999999999999999999999999999999999999 778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
++...|++++|+..|++++.++|+++.++..++.++...|+ +++|+..+.+++...|.++.++..++ .++..|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHH
Confidence 99999999999999999999999999999999999999998 99999999999999998887765543 366677777
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH----H
Q 001392 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS----A 361 (1088)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A 361 (1088)
+|+..+..++...+ +........++.++...|++++|+..|.+++. ..|....+++.+|.++...|++++ |
T Consensus 195 eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 195 EDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 77777766654321 11122334445566666666666666666665 345555566666666666666654 5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001392 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~ 440 (1088)
+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.++ ..|++++|+..|.+++...|
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 66666666666666666666666666666666666666666666666666666666555 55555555555555554322
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
. ....+..+|.++...|++++|+..|++++.
T Consensus 350 ~-----~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 350 V-----TSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred c-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 123333344555555555555555555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-25 Score=273.26 Aligned_cols=397 Identities=12% Similarity=0.005 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+.+|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++.+|+..+++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33899999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1088)
...|++ +. ++.+|.++...|++++|+..|++++...|++..++..++.++...+. .+.|+..++++.. .|....
T Consensus 111 ~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~---~e~Al~~l~~~~~-~p~~~~ 184 (765)
T PRK10049 111 SGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL---SAPALGAIDDANL-TPAEKR 184 (765)
T ss_pred HhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHhCCC-CHHHHH
Confidence 999999 55 89999999999999999999999999999999999999999988887 8889999987765 554211
Q ss_pred -----HHHHHHHHHHh-----cCCH---HHHHHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 270 -----ALNYLANHFFF-----TGQH---FLVEQLTETALAVTNHGPTK----SHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 270 -----~~~~la~~~~~-----~g~~---~~A~~~~~~~l~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
....+..+... .+++ +.|+..++.++...+..|.. ..+.+.....+...|++++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 12222222222 2334 67888888888664444432 1222222334567899999999999998
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
...+..|... ...+|.+|+..|++++|+.+|++++...|.+ ......++.++...|++++|+.++.++....|.
T Consensus 265 ~~~~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 265 AEGQIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred ccCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 7422224433 3446899999999999999999999888765 456777888899999999999999999988763
Q ss_pred ---------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001392 409 ---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 472 (1088)
Q Consensus 409 ---------------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 472 (1088)
...++..++.++ ..|++++|+..+++++...|. .+.++..+|.++...|++++|+..++
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 245677888889 999999999999999987655 47899999999999999999999999
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 001392 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (1088)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (1088)
+++. ..|++..+++.+|.++...|++++|...++.++
T Consensus 418 ~al~-------------------------------------------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 418 KAEV-------------------------------------------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHh-------------------------------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998 578899999999999999999999999999999
Q ss_pred HHcCCcHHHH
Q 001392 553 FKYQDYVDAY 562 (1088)
Q Consensus 553 ~~~p~~~~~~ 562 (1088)
+..|+++.+.
T Consensus 455 ~~~Pd~~~~~ 464 (765)
T PRK10049 455 AREPQDPGVQ 464 (765)
T ss_pred HhCCCCHHHH
Confidence 9999987554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-23 Score=252.24 Aligned_cols=546 Identities=13% Similarity=0.040 Sum_probs=415.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
..++.+++..+... .+...+..+-..+.+.|++.+|+.+|+.+...+.-. ....+..+..++...|....|..+|..+
T Consensus 354 ~~~~~~~~~~~~~~-~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 354 ENSLAAYNGGVSGK-RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhHHHhccccCCC-CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33444444444333 344455555556678899999999999887765322 1333444566677888899998888776
Q ss_pred HhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001392 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1088)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1088)
.. | +...|..+...+...|+ ++.|...|..+.+... .+..+++.+...|...|+++.|..+|+.+.... ..
T Consensus 433 ~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~ 504 (1060)
T PLN03218 433 RN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VE 504 (1060)
T ss_pred CC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CC
Confidence 54 4 56677777777888887 8889999988877653 467888899999999999999999999988642 23
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHH
Q 001392 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---PDNCETL 379 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~ 379 (1088)
.+..+|..+...|.+.|++++|+.+|..+... ....+..+|..+...|.+.|++++|..+|..+.... ..+..++
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 35688999999999999999999999998753 223446678899999999999999999999997631 2346788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 457 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 457 (1088)
..+..+|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+... +..++..+++.+...
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHH
Confidence 889999999999999999999998876 56778899999999 999999999999987653 445567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHh
Q 001392 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1088)
Q Consensus 458 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1088)
+.+.|++++|..+|..+...+ .+.+..++..+...|.+
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G------------------------------------------~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQG------------------------------------------IKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcC------------------------------------------CCCCHHHHHHHHHHHHh
Confidence 999999999999999998743 23367789999999999
Q ss_pred cCCHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCChhHHHhhhhhhhcccchHHHHH
Q 001392 538 IHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1088)
.|++++|..+|..+... .| +..+|..+...|.+.|++++|..+|.++.... ..+..++..+...+.+.|+++.|..
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998763 34 46889999999999999999999999987654 2345677778889999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHH
Q 001392 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1088)
Q Consensus 615 ~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A 694 (1088)
+|..+++.+..++...+..+..+ +. +.+.+|......++..++.++. ...+....|
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~~A 831 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRPQ---------IENKWTSWA 831 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhccccc---------cccchHHHH
Confidence 99999998877777766666433 21 4467777766666555433222 222344679
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 001392 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774 (1088)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~ 774 (1088)
+.+|+++++..-. .+..+|..+-.|+...+....+..+++.+.. -+..++..++..|...+.. ...+|...|+
T Consensus 832 l~lf~eM~~~Gi~----Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~ 904 (1060)
T PLN03218 832 LMVYRETISAGTL----PTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGE--YDPRAFSLLE 904 (1060)
T ss_pred HHHHHHHHHCCCC----CCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhcc--ChHHHHHHHH
Confidence 9999999987621 2456677777788888888888777766432 2345566777777776622 1358999999
Q ss_pred HHHHh
Q 001392 775 RAIHL 779 (1088)
Q Consensus 775 ~al~~ 779 (1088)
.+...
T Consensus 905 em~~~ 909 (1060)
T PLN03218 905 EAASL 909 (1060)
T ss_pred HHHHc
Confidence 98885
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-25 Score=230.90 Aligned_cols=429 Identities=16% Similarity=0.163 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.++-.+|.-+++.|+|++|+++|.+++.+.|+. +..|.+++.||..+|++++.++...++++++|+.+.+++..+..+-
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 345556677777777777777777777777776 4556777777777777777777777777777777777777777777
Q ss_pred hhchHHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1088)
..|+ +.+|+....-..-+. -.+......+-..+-. .+..-....+. .+..|..+...+.-. |+.
T Consensus 195 ~lg~---~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k-~nr~p~lPS~~fi~s--yf~---- 259 (606)
T KOG0547|consen 195 QLGK---FDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLK-ENRPPVLPSATFIAS--YFG---- 259 (606)
T ss_pred hhcc---HHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhc-ccCCCCCCcHHHHHH--HHh----
Confidence 7777 666665433211110 0011000000001100 01111111111 011222222211100 000
Q ss_pred HHHHHHHHHHHHhcCCCC-CchhhHhhHHHHHHHc---CCHHHHHHHHHHHHHhC----CCc---------HHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKL---GDFRSALTNFEKVLEIY----PDN---------CETLKALGH 384 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~----p~~---------~~~~~~la~ 384 (1088)
.|..-+......+ +...+-..-+.-+... ..|..|...+.+..... ..+ ..++...|.
T Consensus 260 -----sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 260 -----SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred -----hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 0000000000000 0000000000011111 13444444443332211 001 345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (1088)
.++-.|++-.|...|.+++.++|.+...|+.++.+| ....+.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y--------------------------------------~d~~~~ 376 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAY--------------------------------------ADENQS 376 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHH--------------------------------------hhhhcc
Confidence 555666666666666666666665555555444444 444455
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHH
Q 001392 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544 (1088)
Q Consensus 465 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 544 (1088)
.+-...|.++.. ++|.++.+|+..|.++.-++++++|
T Consensus 377 ~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 377 EKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred HHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 555555555555 5677788888888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCC
Q 001392 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1088)
Q Consensus 545 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 624 (1088)
+.-|++++.++|+++.++..++.+..+++.+.++...|+.+....|+.++++...|.++..+++++.|.+.|.+++.+.|
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred CCCh-----HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHH
Q 001392 625 GKDS-----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 699 (1088)
Q Consensus 625 ~~d~-----~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 699 (1088)
..+. ..++.-+.+ .++ ..+++..|+.+++++++++|.+..++.+||.+..++|+.++|+++|+
T Consensus 494 ~~~~~~v~~~plV~Ka~l-~~q-----------wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALL-VLQ-----------WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccchhhhhhhHh-hhc-----------hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5221 112222222 111 11899999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001392 700 QVQEAA 705 (1088)
Q Consensus 700 ~~~~~~ 705 (1088)
+.....
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 998865
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-22 Score=249.30 Aligned_cols=546 Identities=11% Similarity=0.005 Sum_probs=383.0
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
.++.+++....-.+ +...++..-..+.+.|++.+|+.+|+.+...+. .+...+..+...+...|.+.+|+.+|..+.
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 45555555554433 444555566667788888888888888876652 344444555666777888888888887665
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC-CC
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 267 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~ 267 (1088)
. |+ ..++..+..+|...|+++.|..+|..+.+.... +...+..+...|.+.|+ ++.|..+|..+..... .+
T Consensus 434 ~--pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 434 N--PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred C--CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCC
Confidence 4 44 456777777888888888888888888876543 56777888888888888 8888888888877653 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
..+|+.+...|.+.|++++|..+|..+.... ...+..+|..+...|...|++++|..+|..+............+|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 7888888888888888888888888887542 22345778888888888888888888888887521112233566788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCC
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSD 424 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~ 424 (1088)
+...|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|+.+|.++.... ..+...|..+...+ ..|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 8888888888888888888888765 4567788888888888888889988888887753 22466777788888 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
+++|..++..+.+. +...+..+++.+...|.+.|++++|..+|..+...+
T Consensus 665 ~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-------------------------- 714 (1060)
T PLN03218 665 LDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-------------------------- 714 (1060)
T ss_pred HHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------------
Confidence 88888888877653 455567888888888888999999988888876532
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~ 583 (1088)
..| +..+|..+...|.+.|++++|..+|..+.... ..+..+|..+...+...|+++.|..++.
T Consensus 715 ---------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 715 ---------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred ---------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223 56778888888888899999998888887642 2345677777788888888888988888
Q ss_pred HHHHHCCC-ChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHH
Q 001392 584 EALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662 (1088)
Q Consensus 584 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 662 (1088)
.+++.... +..++..+..++. +.+.+|.......+... .++. +... +....|+.
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~-~~~n------------~w~~~Al~ 833 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRP-QIEN------------KWTSWALM 833 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------cccc-cccc------------chHHHHHH
Confidence 88876522 2333443332222 24555555544333221 1222 2222 44567888
Q ss_pred HHHHHHhcCC-CCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001392 663 LYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (1088)
Q Consensus 663 ~~~~al~~~p-~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al 741 (1088)
+|++++...- .+..++..+-.++...+....+..++..+.... ...+..+|..+.+.+... ..+|..+|+.|.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~----~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA----DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC----CCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 8888888662 245555555556666666666666665543221 124566777777776321 357888888888
Q ss_pred HHh
Q 001392 742 RKF 744 (1088)
Q Consensus 742 ~~~ 744 (1088)
...
T Consensus 908 ~~G 910 (1060)
T PLN03218 908 SLG 910 (1060)
T ss_pred HcC
Confidence 764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-25 Score=230.03 Aligned_cols=427 Identities=16% Similarity=0.144 Sum_probs=325.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+-.+|+-++..|+|++|+++|..++...|+.+..+-.++-||...|+|++-++...++++++|+. .-+++..+.++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999999999999999999 778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh-cCCH
Q 001392 209 KLGQLGKARQAFQRALQLD-PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI--YPYCAMALNYLANHFFF-TGQH 284 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~-~g~~ 284 (1088)
.+|++.+|+.-..-..-+. -++......+-.++-. .|+.....-++. .|.-|. -..++.++.. ..+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk--------~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK--------QAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH--------HHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccc
Confidence 9999999987655332221 1122222222222222 233333433431 222221 1111111100 0000
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcC-CCCCc---------hhhHhhHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEIN-KPHEF---------IFPYYGLGQV 351 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~-~~~~~---------~~~~~~la~~ 351 (1088)
..........+.....-+.-+...+ .|..|...+.+...... ....+ +.++...|..
T Consensus 266 ----------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 266 ----------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred ----------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0000000111222222222222233 57777777776654211 11112 5677788889
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHH
Q 001392 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (1088)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~ 430 (1088)
++-.|++-.|...|+.++.++|.+...|..++.+|....+..+....|.++..++|.++.+|+..|.++ ..+++++|+.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1088)
-|++++.+.|. .+..+..++.+.++.+.+.++...|+.+..
T Consensus 416 DF~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk---------------------------------- 456 (606)
T KOG0547|consen 416 DFQKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK---------------------------------- 456 (606)
T ss_pred HHHHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 99999998776 377888999999999999999999999988
Q ss_pred hccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH-HcCChHHHHHHHH
Q 001392 511 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVN 583 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~l~ 583 (1088)
..|..+.++...|.++..+++++.|++.|..++.+.|. ++..+...|.+.. -.+++..|+.++.
T Consensus 457 ---------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 457 ---------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred ---------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 46788899999999999999999999999999999988 5555555554432 3489999999999
Q ss_pred HHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 584 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
++++++|.+..++..||.+.+++|+.++|+++|++++.+.
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-23 Score=256.70 Aligned_cols=466 Identities=13% Similarity=0.017 Sum_probs=349.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHH
Q 001392 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1088)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1088)
.|..+...+...|++..|..+|..+...... ..+..++..+..++...++++.|..++..+.... . .....++..+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~-~~~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSG-F-EPDQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-C-CcchHHHHHHH
Confidence 4555566666777777777777766543221 2344667777777777888888888877776531 2 23456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-hcCCHHH
Q 001392 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p-~~~~~~~~la~l~-~~~~~~~ 427 (1088)
.+|.+.|+++.|..+|+.+.. .+..+|..+...|.+.|++++|+.+|.++....+ .+..++..+...+ ..+....
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 888888888888888877743 3566778888888888888888888888876542 2345555555666 7777777
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
+..++..+.+. +...+..+++.+...|.+.|++++|..+|..+..
T Consensus 243 ~~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------------------------------- 287 (697)
T PLN03081 243 GQQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------------------------------- 287 (697)
T ss_pred HHHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------
Confidence 77766655443 3344567788888888899999999888876532
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 586 (1088)
.+..+|..+...|...|++++|..+|..+.... ..+..+|..+...+...|.+++|..++..++
T Consensus 288 ---------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 288 ---------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred ---------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 256788888888999999999999998887642 2245688888888889999999999988888
Q ss_pred HHC-CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 587 KVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 587 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
+.. +.+..++..+...|.+.|+++.|..+|+++.. ++..+|..|... |... |+.++|+++|+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~ 415 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GRGTKAVEMFE 415 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CCHHHHHHHHH
Confidence 876 55677888889999999999999999987654 366778888888 8888 88999999999
Q ss_pred HHHhcCCC-CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 666 RVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 666 ~al~~~p~-~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
++...+.. +..+++.+...+.+.|.+++|..+|..+.+..+-. .+...|..+..+|.+.|++++|.++++.+
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---p~~~~y~~li~~l~r~G~~~eA~~~~~~~---- 488 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---PRAMHYACMIELLGREGLLDEAYAMIRRA---- 488 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC---CCccchHhHHHHHHhcCCHHHHHHHHHHC----
Confidence 98876532 67788888888999999999999999998754211 24567888899999999999999887653
Q ss_pred cCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHH
Q 001392 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 824 (1088)
Q Consensus 745 ~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~ 824 (1088)
+..++..+|..|..+|...|+++.|..++++++.+.|.+...+..++.+|. ..+.+++|.+
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~-------------------~~G~~~~A~~ 549 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN-------------------SSGRQAEAAK 549 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH-------------------hCCCHHHHHH
Confidence 456778888999999999999999999999999999987666555554433 3345788888
Q ss_pred HHHHHhhCCC
Q 001392 825 VFSHLSAASN 834 (1088)
Q Consensus 825 ~f~~l~~~~~ 834 (1088)
++..+...+-
T Consensus 550 v~~~m~~~g~ 559 (697)
T PLN03081 550 VVETLKRKGL 559 (697)
T ss_pred HHHHHHHcCC
Confidence 8888877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-22 Score=226.47 Aligned_cols=656 Identities=16% Similarity=0.064 Sum_probs=471.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH--------------hchhhhh-hhhh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY--------------LGKIETK-QREK 106 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~--------------~g~~~~~-~~~r 106 (1088)
.....+.+......|.++..++....... |.+. .+..+.|++.+ .+..... ..-.
T Consensus 401 n~~akgl~~ie~~~y~Daa~tl~lv~~~s----~nd~------slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~ 470 (1238)
T KOG1127|consen 401 NQRAKGLAPIEANVYTDAAITLDLVSSLS----FNDD------SLSELSWCLPRALEKMMDVALLLECENSEFWVALGCM 470 (1238)
T ss_pred hhhhcchhHHHHhhchHHHHHHHHHHHhh----cCch------hhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 35666777788888888888777653321 1111 12222222221 1111000 0011
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.++...|...|-++++++|+...+|..+|..|...-+...|.++|+++..++|++..+.-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 187 RALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 187 ~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
.+-+..|.. ....|..+|..|...+++..|+..|+.++..+|.+..+|..+|.+|...|. +..|++.|.++..++|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCc
Confidence 766666543 123456699999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----C
Q 001392 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN----HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----K 337 (1088)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~ 337 (1088)
.+..+.+..+.+....|.|..+...+...+.... .....++++..++..++..|-+.+|..++++++..+. .
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988875321 1234567888888889999999999999988876321 0
Q ss_pred C-CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCCH------HHHHHHHHHHHHhCC
Q 001392 338 P-HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQI------EKAQELLRKAAKIDP 407 (1088)
Q Consensus 338 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~------~~A~~~~~k~l~~~p 407 (1088)
. ......|..++... .+| ....|+.+..++ ++.+.- ..+.. --|.+++-..+++..
T Consensus 708 ~~~~~~~~Wi~asdac----------~~f---~q~e~~~vn~h~-l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDAC----------YIF---SQEEPSIVNMHY-LIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred hhhhhHHHHHHHhHHH----------HHH---HHhcccchHHHH-HHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 0 11122222222221 122 222244332222 111111 11111 123344444443322
Q ss_pred CCHHHHHHHHHHH-h--------cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 408 RDAQAFIDLGELL-I--------SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 408 ~~~~~~~~la~l~-~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
++..|++||.-| . ..+...|+.++.+++++..+ +...|+.+|.+ ...|++.-|..+|-+.+.
T Consensus 774 -~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-----n~~~WnaLGVl-sg~gnva~aQHCfIks~~-- 844 (1238)
T KOG1127|consen 774 -HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-----NEGLWNALGVL-SGIGNVACAQHCFIKSRF-- 844 (1238)
T ss_pred -ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-----cHHHHHHHHHh-hccchhhhhhhhhhhhhh--
Confidence 256677777654 2 22445889999999998665 37889999988 667999999999988876
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc
Q 001392 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1088)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1088)
..|.....|+|+|.++....+++-|...|..+..++|.+
T Consensus 845 -----------------------------------------sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 845 -----------------------------------------SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred -----------------------------------------ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 567788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-----hhHHHhhhhhhhcccchHHHHHHHHHh----------hhcC
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA----------SDAT 623 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a----------l~~~ 623 (1088)
...|...+.+....|+.-++...|.....+.... ...|..-...+..+|+++.-+..-+++ +...
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 9999999999999999999999998855444222 224445555667777766655554443 3333
Q ss_pred CCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc-----C-CCCHHHHhhHHHHHHhcCCchHHHHH
Q 001392 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-----H-TSNLYAANGAGVVLAEKGQFDVSKDL 697 (1088)
Q Consensus 624 ~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~-p~~~~a~~~la~~l~~~g~~~~A~~~ 697 (1088)
|. ..+++...|.. .-.. +.+..|.+.+.+.+.+ + .....+--..|.+++..|.++.|...
T Consensus 964 p~-~~fAy~~~gst-lEhL------------~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 964 PQ-LCFAYAANGST-LEHL------------EEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred cc-hhHHHHHHHhH-HHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 44 55666666655 4444 6777777777665442 1 11233666788999999999977665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHH
Q 001392 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRA 776 (1088)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~a 776 (1088)
+...-... +....-+.+ ..+-.|+|.++.+.|++++.......+ +.++..++.+....+..+.|...+-++
T Consensus 1030 ~~~~~~ev------dEdi~gt~l--~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1030 SWKEWMEV------DEDIRGTDL--TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred hcccchhH------HHHHhhhhH--HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 54432211 111111122 226679999999999999998655555 556667888889999999999999999
Q ss_pred HHhCCCChhHHhHHHHHHHH
Q 001392 777 IHLAPSNYTLRFDAGVAMQK 796 (1088)
Q Consensus 777 l~~~p~~~~~~~nla~~~~~ 796 (1088)
+.+.|.+....+-++.++--
T Consensus 1102 ~~ls~~~~~sll~L~A~~il 1121 (1238)
T KOG1127|consen 1102 KSLSKVQASSLLPLPAVYIL 1121 (1238)
T ss_pred HHhCccchhhHHHHHHHHHH
Confidence 99999998888888776433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-23 Score=253.78 Aligned_cols=463 Identities=12% Similarity=0.005 Sum_probs=338.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
.|......+...|++.+|+..|..+.... +.+...+..+..++.+.+++..|..++..+..........++..+..+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56666677777778888888877776543 2345666666677777777777777777766654322245566666777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
.+.|+++.|...|..+.. | +. .+|+.+...|...|++++|
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~-~~-------------------------------------~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R-NL-------------------------------------ASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C-Ce-------------------------------------eeHHHHHHHHHHCcCHHHH
Confidence 777777777777666532 2 23 3444444444455555555
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH
Q 001392 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1088)
..+|..+.... ......++..+..++...|....+..++..+++. .......++..+...|.+.|++++|...|+.
T Consensus 209 ~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 209 FALFREMWEDG--SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHhC--CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55555554321 1223355666666777777788777777776653 2233455677788888888888888888877
Q ss_pred HHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
+. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..++..+...+ ..|.++.|...+..+.+. +..
T Consensus 285 m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~ 357 (697)
T PLN03081 285 MP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFP 357 (697)
T ss_pred CC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCC
Confidence 63 4567788888888999999999999998887643 33566777777777 888888888888877654 444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch
Q 001392 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
.+..+++.+...|.+.|++++|...|.++.. .+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------------------------------------------~d~ 391 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------------------------------------------KNL 391 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------CCe
Confidence 5577888899999999999999999987643 155
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--ChhHHHhhhhh
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGDL 602 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~l~~~ 602 (1088)
.+|+.+...|...|+.++|+.+|+++.... ..+..++..+...+...|.+++|..+|+.+....+- +...+..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 678889999999999999999999988743 224677888888888999999999999998865433 34578888999
Q ss_pred hhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHH
Q 001392 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (1088)
Q Consensus 603 ~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la 682 (1088)
|.+.|++++|.+.++++ ...++..+|..|... |... |+++.|...+++++...|.++..+..++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 99999999999988764 233466777778777 7777 8899999999999999999888899999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHh
Q 001392 683 VVLAEKGQFDVSKDLFTQVQEAA 705 (1088)
Q Consensus 683 ~~l~~~g~~~~A~~~~~~~~~~~ 705 (1088)
.+|...|++++|.++++.+.+..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998865
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-22 Score=243.16 Aligned_cols=468 Identities=10% Similarity=-0.031 Sum_probs=315.2
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
-..|..+...+..+.+.++.|++..|+..|.++++.+|.++.+...++.++...|++.+|+.++++++...|.. .....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-~~~ll 106 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-SRGLA 106 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-HHHHH
Confidence 34566666666666666666666666666666666666665444466666666666666666666666222222 22233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.++...|++++|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++.++...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 335566666666666666666666666666666666666666655 666666666666666664443 3334444445
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc------
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------ 355 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~------ 355 (1088)
++..+|+..+++++... |.....+..+..++...|-...|.+...+--..+ ............+.-.++.
T Consensus 183 ~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 55545666666666443 5555666666666666666666665544322111 0001001111111111111
Q ss_pred ---C---CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-
Q 001392 356 ---G---DFRSALTNFEKVLEIYPDNC-------ETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL- 420 (1088)
Q Consensus 356 ---g---~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~- 420 (1088)
. -.+.|+.-++.++...+..+ .+..-...++...+++.+++..|+.+.... |--..+....|..|
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1 23557777777777443322 344455666778899999999999887554 33456777788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh-hhhcccccchhhhhhhhh
Q 001392 421 ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS 498 (1088)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~-~~~~~~~~~~~~~~~~~~ 498 (1088)
..+++.+|..+|..++...+.. ..+........|...|...+++++|..++.+.....|+ .......
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~----------- 407 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP----------- 407 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC-----------
Confidence 9999999999999987654321 11222334567888899999999999999999875442 1111110
Q ss_pred HHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHH
Q 001392 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (1088)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 578 (1088)
....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.+..|
T Consensus 408 ------------------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 408 ------------------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred ------------------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 11156777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCC
Q 001392 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (1088)
Q Consensus 579 ~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d 627 (1088)
...++.++.++|.+..+...++.+++..++|.+|......++...|+..
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999999999999999999999999999998843
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-22 Score=224.63 Aligned_cols=598 Identities=15% Similarity=0.085 Sum_probs=344.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
|..+|..|+..+++-.|+..|+.++..+|.+..+|.++|.+|...|.|..|++.|.++..++|.+ ....+..+.+...+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECDN 643 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHh
Confidence 34455555555666666666777777777777777777777777777777777777777777776 55566667777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-----------HHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------AAGIRKGMEKMQRAFEIY-PYCAMALNYLANHF 278 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~ 278 (1088)
|.|.+|+..+...+........+...++.++++.-. ...+++++..|.-++... -.+...|..++...
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 777777777766666555444444444444443211 011233333333333322 23333333333222
Q ss_pred HhcCCHH--H---------------------------HHHHHHHHHhhcCCCCCchHHHHHHHHHHHh--------cCCH
Q 001392 279 FFTGQHF--L---------------------------VEQLTETALAVTNHGPTKSHSYYNLARSYHS--------KGDY 321 (1088)
Q Consensus 279 ~~~g~~~--~---------------------------A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~--------~g~~ 321 (1088)
...-..+ . +.+.+-..++. ...+..|+++|..|++ +.+.
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl----~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL----AIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH----hhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 1110000 0 11111111111 1124567777777665 1233
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 401 (1088)
..|+..+.++++ ...++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++-|...|.+
T Consensus 800 ~~Ai~c~KkaV~---L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVS---LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHH---HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 467777777776 344555667777776 5557788888888888888888888888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001392 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1088)
Q Consensus 402 ~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~ 480 (1088)
+..++|.+...|...+.+. ..|+.-+++..|..........+.......+.+....+..+|+++.-+..-.++-....
T Consensus 876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~- 954 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL- 954 (1238)
T ss_pred hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH-
Confidence 8888888888888777777 77777777777766555444444444456666666677777777666655544432110
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH------
Q 001392 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK------ 554 (1088)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 554 (1088)
-...+| ...|....++...|.++..++.+..|...+.+++..
T Consensus 955 ----------------------al~~yf----------~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 955 ----------------------ALSYYF----------LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred ----------------------HHHHHH----------hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000011 145777788888888888888888888887776541
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-HHHhhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHH
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATL 632 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~a~~ 632 (1088)
...+..+--.+|.+++..|+++.|...+... |.... -........+-.|++.++.+.|++++.+..+ .+...++
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~----~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl 1078 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKE----WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhccc----chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 1223346666777788888887665443321 11110 0011111124567788888888888876544 2333332
Q ss_pred HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 001392 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (1088)
Q Consensus 633 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (1088)
.-+.+..... +.-+-|...+-+++.+.|........|+.++.-..+-.....+.++....... .. -
T Consensus 1079 ~kva~~~g~~------------~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~-e~-~ 1144 (1238)
T KOG1127|consen 1079 CKVAVCMGLA------------RQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKL-EW-F 1144 (1238)
T ss_pred HHHHHHHhhc------------ccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhh-HH-h
Confidence 2222201111 55667777777788888777777777777766554443333333333332110 00 0
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-c-------------cHHHHHHHHHHHHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-E-------------QWQDCKKSLLRAIH 778 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~-g-------------~~~~A~~~l~~al~ 778 (1088)
+-+.-+..-.+|..+|+-..-.+.+++++-. .|.++.+|..|..-|... + .+..-++..+++..
T Consensus 1145 ~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL~vrya~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~~ 1222 (1238)
T KOG1127|consen 1145 CWPPGLLKELIYALQGRSVAVKKQIQRAVHS--NPGDPALWSLLSVRYAQRNAKNGVVANHGKKAYLYTAVLKTIQKAAL 1222 (1238)
T ss_pred ccChhHHHHHHHHHhhhhHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHhccCCeehhHHHHHHHHHHHHHHHHHHHh
Confidence 1222233445666777777777777777765 455566666555322111 0 12233555677777
Q ss_pred hCCCChhHHhHH
Q 001392 779 LAPSNYTLRFDA 790 (1088)
Q Consensus 779 ~~p~~~~~~~nl 790 (1088)
+.|.|+.++-.+
T Consensus 1223 L~Pwd~a~wkaL 1234 (1238)
T KOG1127|consen 1223 LSPWDPAIWKAL 1234 (1238)
T ss_pred cCCCCHHHHHHH
Confidence 888877766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-23 Score=216.06 Aligned_cols=457 Identities=19% Similarity=0.168 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHHHhhc--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHH
Q 001392 108 EHFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSD 180 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~ 180 (1088)
.-+.+|+..|+-.++- .|+....-+..|.+++++.+|.+|+++|+-++..-|.- ...+...|..+.+.|.|+.
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3445888888777643 46666677788999999999999999999999888752 4567778888899999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C---------CCH-HHHHHHHH--HHHhhch
Q 001392 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--P---------ENV-EALVALAV--MDLQANE 246 (1088)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p---------~~~-~a~~~la~--~~~~~~~ 246 (1088)
|+..|+.++...|+.. +-+.+..|++..|+-++-...|.+++.+- | +++ ..++.-+. -.++.-.
T Consensus 295 ainsfdh~m~~~pn~~--a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNFI--AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHhCccHH--hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 9999999999999873 34678889999999999999999998751 1 111 11222111 1111100
Q ss_pred HHhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCH
Q 001392 247 AAGIRKGMEKMQRAFEI-----YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1088)
..+-..|.+.+..+.++ .|+... .-.++-..++.....+...+.-.+.+-.+.+.|++
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~-----------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAA-----------------GCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhc-----------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 01111222222222222 122211 11122222222222333345566778889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (1088)
+.|++++.-.-+. .+.....+-.+|..+++.+ .++..|..+...++.++.-++.++.+.|.+.+..|++++|...|
T Consensus 436 ~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999998765542 2222333456666666664 37889999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 400 ~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
+.++..+.....+++++|..+ ..|+.++|+.+|-+...++.+ ++++++.++.+|-.+.+...|+++|.++..
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~s-- 586 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANS-- 586 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--
Confidence 999999999999999999999 999999999999999888776 489999999999999999999999999877
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc
Q 001392 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1088)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1088)
.-|.++.++..||.+|-+.|+..+|.+++-......|-+
T Consensus 587 -----------------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 587 -----------------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence 568899999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHh
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~l 634 (1088)
.++.-.|+..|....-+++|+.+|+++.-+.|+......+++.|+.+.|+|..|..+|+.+....|. +...+-.|
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkfl 700 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFL 700 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 9999999999999999999999999999999998888888999999999999999999999998887 54444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-22 Score=241.23 Aligned_cols=442 Identities=12% Similarity=-0.002 Sum_probs=353.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
|+|++..|+..|.++++.+|.++.....++.++...|++++|+.++++++...|.+...+..+|.++...|+|++|+.+|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556699999999999999997555588899999999999999999999444445556666688999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
++++..+|++ +.++..++.++...++.++|+..+.+++..+|.+... ..++.++...++ ..+|+..+++++..+|
T Consensus 126 ~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P 200 (822)
T PRK14574 126 QSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCC
Confidence 9999999999 7778899999999999999999999999999986554 555555544444 6669999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc---------C---CHHHHHHHHHHHHH
Q 001392 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASVK 333 (1088)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~al~ 333 (1088)
.+..++..+...+...|-...|.++...--..... ......-...+.-..+. . -.+.|+..+..++.
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887754322111 00001111111111111 1 24567777777776
Q ss_pred hcCCCCC----chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-
Q 001392 334 EINKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP- 407 (1088)
Q Consensus 334 ~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p- 407 (1088)
..+..|. ...+....-.++...|++.+++..|+.+.... |-...+....|..|+..+++++|..+|..++...|
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 4444342 23345566777889999999999999987654 33456888899999999999999999999988653
Q ss_pred -----CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 408 -----RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-A---------GEEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (1088)
Q Consensus 408 -----~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~-~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~l 471 (1088)
........|...+ ..+++++|..++.+.....|- . +.+.-......++.++...|++.+|...+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333346667777 999999999999999875441 0 11111467777899999999999999999
Q ss_pred HHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 001392 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1088)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1088)
++.+. ..|.+..+...+|.++...|.+..|...++.+
T Consensus 440 e~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 440 EDLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99987 56889999999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHH
Q 001392 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (1088)
Q Consensus 552 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 596 (1088)
+..+|.+..+...++.++..++++.+|......++...|+++.+.
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999999999999999999999999998654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-24 Score=218.58 Aligned_cols=478 Identities=18% Similarity=0.171 Sum_probs=278.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~ 202 (1088)
.+++.++..|.....+.+|+..|+.+++. .|+....-..+|.++++..+|.+|+++|+-++..-|... ..++..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 56788999999999999999999998864 577777888999999999999999999999999888653 345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC--------------CCCH
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 268 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~--------------p~~~ 268 (1088)
+|..+.+.|.|+.|+..|..+.+..|+. .+-++|..+++..|+ .++-.+.|.+.+.+- |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~-~a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNF-IAALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccH-HhhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 8999999999999999999999999954 455677788888888 666666677776541 1111
Q ss_pred HHHHHHHH-HH--HhcCCHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 001392 269 MALNYLAN-HF--FFTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1088)
Q Consensus 269 ~~~~~la~-~~--~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1088)
.+--.+-. ++ +...+-..|++..-.+.+... ..|..+..+ .+.-..++.....+....
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~-----------------dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC-----------------DWCLESLKASQHAELAID 420 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc-----------------HHHHHHHHHhhhhhhhhh
Confidence 11111100 00 011111112222222221110 001000001 111111110001111122
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
.-.+.+..+++.|+++.|++.+.-.-+.+... ..+-.+|..+++.+ .++..|..+-..++.++.-++.++.+.|.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 23344555666666666666655444333221 12233333333332 2556666666666666666666666666655
Q ss_pred -hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001392 421 -ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1088)
Q Consensus 421 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1088)
..|++++|...|+.++..... -.+.++++|..+-.+|+.++|+.+|-+...+
T Consensus 501 f~ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i---------------------- 553 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI---------------------- 553 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----------------------
Confidence 666666666666666553222 2456666666666666666666666555431
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHH
Q 001392 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 579 (1088)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 579 (1088)
--+++.+++.++.+|..+.+..+|+++|-++...-|+++.++..|+.+|-+.|+-.+|.
T Consensus 554 ---------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 554 ---------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred ---------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 12355566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHH
Q 001392 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (1088)
Q Consensus 580 ~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 659 (1088)
.++-......|.+.++.-.++..|+...-+++|+.+|+++.-+.|....+-+ .++.+ +... |+|.+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql-miasc-~rrs------------gnyqk 678 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL-MIASC-FRRS------------GNYQK 678 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH-HHHHH-HHhc------------ccHHH
Confidence 6666666666666666666666666666666666666666555554222221 22333 4333 66666
Q ss_pred HHHHHHHHHhcCCCCHHHHhhHHHHHHhcC
Q 001392 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (1088)
Q Consensus 660 A~~~~~~al~~~p~~~~a~~~la~~l~~~g 689 (1088)
|+.+|+..-+..|.+...+-.|..+....|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 666666666666666665555555544444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=216.92 Aligned_cols=509 Identities=14% Similarity=0.114 Sum_probs=355.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+..+-+-+..+.+|..|+-+-+++..+. .+ +.-.+.+|.|++-.|++..|......- .+...+..+.+..+.++...
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~-~d-p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT-ND-PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc-CC-hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHH
Confidence 3334445566778888888888887776 44 333566888888888888887776654 45555666677777777776
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1088)
.+ ++.|+.++.+. ... .++..+. +.. + +......+..
T Consensus 96 k~---~~~al~vl~~~-~~~-~~~f~yy-----------------------------~~~--~----~~~l~~n~~~--- 132 (611)
T KOG1173|consen 96 KE---WDQALLVLGRG-HVE-TNPFSYY-----------------------------EKD--A----ANTLELNSAG--- 132 (611)
T ss_pred HH---HHHHHHHhccc-chh-hcchhhc-----------------------------chh--h----hceeccCccc---
Confidence 66 66666665543 000 0000000 000 0 0000000000
Q ss_pred HHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH--
Q 001392 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA-- 402 (1088)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~-- 402 (1088)
... ........++..|.+|....++++|...|..++..++.+.+++..+.....-.. .+-...+...
T Consensus 133 -~~~--------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 133 -EDL--------MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA--QEEFELLESLDL 201 (611)
T ss_pred -ccc--------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch--hHHHHHHhcccH
Confidence 000 111223346667778888888888888888888887777776666555443321 1111111110
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCH-HHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001392 403 AKIDPRDAQAFIDLGELLISSDT-GAALDAF--KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1088)
Q Consensus 403 l~~~p~~~~~~~~la~l~~~~~~-~~A~~~~--~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~ 479 (1088)
-.....+....-.+-.+.....+ +.+...- .... +...+..++...+..++..++|.+..+++...+..
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~------~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-- 273 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI------GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-- 273 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh------hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--
Confidence 00000111111111111100000 0000000 0111 11224678888899999999999999999999884
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch-HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc
Q 001392 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1088)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1088)
+|... ..-..+| ++...|+..+-..+-.+++..+|+.
T Consensus 274 -----------------------------------------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 274 -----------------------------------------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred -----------------------------------------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCC
Confidence 33333 4445556 8888899888888888999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHH
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 638 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~ 638 (1088)
+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+.-.|..++|+..|..+.+..+.... ..+.+|.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgme- 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGME- 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999998776322 23345655
Q ss_pred HHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchhH
Q 001392 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDV 716 (1088)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~ 716 (1088)
|..+ +++..|..+|.+++.+.|.++...+-+|.+....+.+.+|..+|+.++...+.. ..+.....
T Consensus 390 y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 390 YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 8888 999999999999999999999999999999999999999999999999654431 11134567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHH
Q 001392 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1088)
Q Consensus 717 ~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~ 796 (1088)
+.||||+|.+++.+.+||..|+++|.. .+.++.++..+|.+|...|+++.|+..|.+++-+.|++..+.--|+.+++.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998 788899999999999999999999999999999999997776666665443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=216.91 Aligned_cols=447 Identities=17% Similarity=0.164 Sum_probs=364.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+..|..|+-+-+++..+. .+|.-.+.+|.+++..|+|..|......- .....+..+.+..+.++....+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888899999999999999998877665 5666788999999999999999999999988
Q ss_pred HH------HHhCCCC------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.. +...|.+ ...+.+..|.+|..+.++++|...|..++..++.+.++...+....+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33 1111211 12345667888999999999999999999999999888766654433
Q ss_pred hhchH-----H------hHHHHHHHHHHHHHh-------------C--------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 243 QANEA-----A------GIRKGMEKMQRAFEI-------------Y--------PYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 243 ~~~~~-----~------~~~~Al~~~~~al~~-------------~--------p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
..... . ...+-.+.+...+++ + ..++.++...+..++..+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 32210 0 001111111111111 1 24667788889999999999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
++..+... |....++....-+++..|+..+-..+-.+.+. ..|..+..|+.+|..|...|++.+|..+|.++..
T Consensus 267 t~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 267 TEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred hHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999754 44444444444488899988777777677776 7788889999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001392 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1088)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1088)
++|....+|...|..+...|.-++|+..|..+-++.|......+.+|.-| ..++++-|..+|.+++.+.|. ++-
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-----Dpl 415 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-----DPL 415 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-----cch
Confidence 99999999999999999999999999999999999999988889999999 899999999999999998776 588
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHH
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
+++.+|.+.+..+.|.+|..+|+.++...+ ++ ....+.-..++.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik--~~----------------------------------~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK--SV----------------------------------LNEKIFWEPTLN 459 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh--hc----------------------------------cccccchhHHHH
Confidence 999999999999999999999999984211 00 001123456889
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhh
Q 001392 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1088)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~ 602 (1088)
+||.++.+++.+.+|+..|+++|...|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..+-..|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777776644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=198.02 Aligned_cols=364 Identities=17% Similarity=0.097 Sum_probs=279.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC--CCHHHHHH
Q 001392 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNY 273 (1088)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~ 273 (1088)
.+..++..|.++...|....|+..|..++...|-+..+|..|+.+...... .......-| .+...-..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----------~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----------LSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----------HHHHHhcCcccchHHHHHH
Confidence 366788899999999999999999999999999999999998876544322 222222223 33344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1088)
+..++....+.+.+..-.+..... ..|.....-...|.+.+...++++|+..|+...+ .+|....-.-....+++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHHHHhHHHH
Confidence 566666666667776666666543 2455667777788888888888899888888887 45555444455555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH
Q 001392 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 432 (1088)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~ 432 (1088)
-..+-.+-.-+.+.+..++.--+++...+|+.|...++.++|+.+|+++++++|....+|..+|.-| ...+...|+..|
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 5555455455556667777777888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001392 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1088)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1088)
+.|+++.|. +...|+.+|..|..++...=|+-+|++++.
T Consensus 388 RrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~------------------------------------ 426 (559)
T KOG1155|consen 388 RRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE------------------------------------ 426 (559)
T ss_pred HHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh------------------------------------
Confidence 888888665 478888888888888888888888888887
Q ss_pred cCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH----
Q 001392 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV---- 588 (1088)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---- 588 (1088)
..|.+..+|..||.||.++++.++|++.|..++........++.+||.+|.+.++..+|..+|.+.+..
T Consensus 427 -------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 427 -------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred -------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 668888888888888888888888888888888887777888888888888888888888888888873
Q ss_pred ---CCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 589 ---NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 589 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.|....+...|+..+.+.+++++|..+...++.-
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3555567777888888888888887776655443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-20 Score=192.98 Aligned_cols=446 Identities=16% Similarity=0.179 Sum_probs=351.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh--------hhhhHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK--------QREKEEHFIL 112 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~--------~~~r~~~~~~ 112 (1088)
...+++|..|+....++.|.-.|+...+.- .+ .+...+.+ + .|..... ...+......
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~k--~~----------FL~lysk~-L-a~~kk~~e~~~~~l~~~~~~~~~~~ 144 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSKK--SA----------FLRLYSKY-L-AGEKKSEEEMAELLGRLESFSRINS 144 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchHH--HH----------HHHHHHHH-H-hhhHHHHHHHHHhhccchhhhhhhh
Confidence 467899999999999999999999865421 11 11111111 1 0110000 0001111223
Q ss_pred HHHHHHHHhhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 113 ATQYYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1088)
Q Consensus 113 A~~~~~~a~~~----~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1088)
.+..+++-+.. ...++..++..|.++-..|....|+..|..++...|-+-.+|..++.+.- -+......
T Consensus 145 ~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------~~e~~~~l 217 (559)
T KOG1155|consen 145 ELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------DIEILSIL 217 (559)
T ss_pred HHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-------hHHHHHHH
Confidence 33344433322 23567788889999999999999999999999999999999999887653 23333444
Q ss_pred HHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 189 l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
...-|.+ ....-+.++.++..+.+.++++.-++..+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|.
T Consensus 218 ~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 218 VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPY 294 (559)
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCC
Confidence 4334532 1333456788888889999999999999888 78888888888888888888 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
...-+-.+.++++-..+-.+..-+...+... +.-.++++..+|..|...++.++|+.+|+++++ .+|....+|.
T Consensus 295 Rl~dmdlySN~LYv~~~~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWT 368 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWT 368 (559)
T ss_pred cchhHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHH
Confidence 8888888888888887766666666655543 355668999999999999999999999999998 7889999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~ 425 (1088)
.+|.-|..+++...|+..|+++++++|.+..+|+.||..|..++...=|+-+|++++..-|+++..|..||.+| ..++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001392 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1088)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1088)
++|+++|.+++.... ....++..+|.+|-+.++..+|..+|.+.+.... ..
T Consensus 449 ~eAiKCykrai~~~d-----te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~----~e-------------------- 499 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGD-----TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE----LE-------------------- 499 (559)
T ss_pred HHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hh--------------------
Confidence 999999999998632 2468899999999999999999999999987310 00
Q ss_pred hhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC
Q 001392 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557 (1088)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (1088)
....+....+...|+..+.+.+++++|..+...++.-++.
T Consensus 500 ------------g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 500 ------------GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ------------cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 0033445566667999999999999999888877765443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=221.23 Aligned_cols=312 Identities=21% Similarity=0.242 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
..+.++..+|..|..+.. -+..+|+..|.+.-...++...++..+|..|+..++|++|.++|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~---------y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQ---------YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455666667777665543 34568999999976667777788888999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.....-....++....+--+---+.+.++..+|+. |..|..+|.||..+++++.|+.+|+++++++|....++..+|.-
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77777777777777777666556667778888988 77899999999999999999999999999999999999999988
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1088)
+..... ++.|+.+|++++..+|.+..+|+.+|.+|.++++++.|+-.|++++. .+|........+|.++++.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhh
Confidence 888777 99999999999999999998888888888888888888888888874 447777777788888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
.++|+.+|++|+. .+|.++...+..|.+++..+++++|+..++++-+.-|+...++..+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 8888888888876 5677777778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHH
Q 001392 401 KAAKIDPRDAQ 411 (1088)
Q Consensus 401 k~l~~~p~~~~ 411 (1088)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88887776544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=208.33 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 001392 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-------CETL 379 (1088)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~ 379 (1088)
....+|...+...++..|++.|..++. .. ..+.-+.+.+.+|+..|.+..++..+..+++..... ..++
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 456788888999999999999999987 33 455557788899999999999998888887754332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
..+|..|...++++.|+.+|.+++..... ..++ .....++++.......-+.+.. ..-...-|..+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~ 368 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEA 368 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHH
Confidence 45666777788899999999997765433 2333 4444555555554444333321 34445569999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 538 (1088)
+..|+|..|+..|.+++. .+|.++..+.|.|.||..+
T Consensus 369 Fk~gdy~~Av~~YteAIk-------------------------------------------r~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIK-------------------------------------------RDPEDARLYSNRAACYLKL 405 (539)
T ss_pred HhccCHHHHHHHHHHHHh-------------------------------------------cCCchhHHHHHHHHHHHHH
Confidence 999999999999999988 5688999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHH
Q 001392 539 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1088)
Q Consensus 539 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1088)
|.+..|+.-.+.+++++|+.+.+|++-|.++..+.+|+.|++.|.+++..+|++.++...+..+...+........+.++
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888888887654333333444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-18 Score=188.51 Aligned_cols=449 Identities=15% Similarity=0.154 Sum_probs=331.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...++..+.-++..++|...++..+.+++..|.++..+..+|..+...|+-++|......+++.++.+ ...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHH
Confidence 34677778888889999999999999999999999999999999999999999999999999999988 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
....+|++|+.+|..|+.++|+|...|.-++.+..+.++ ++-....-.+.++..|.....|..++..+...|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 88888888888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHH
Q 001392 288 EQLTETALAVTNHGPTK-----SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1088)
..+.+...+.....+.. .++......+....|.+++|++.+..--. ..-+........+.+++..+++++|.
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 99998888765433322 34455566777788888888887765443 11223334556788899999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001392 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~ 440 (1088)
..|...+..+|++...+..+-.++....+.-+++ ..|...-+..|.. .....++.-. ....+.. .+.+.+...-
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~---~vdkyL~~~l 315 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKE---IVDKYLRPLL 315 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHH---HHHHHHHHHh
Confidence 9999999999999888888877776444444454 4555444444432 2223333322 1122222 2222222211
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC-----
Q 001392 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG----- 515 (1088)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 515 (1088)
..|. +.+..++-.+|-.-. .. .++++.+. .+.+.+...+
T Consensus 316 ~Kg~---p~vf~dl~SLyk~p~---k~-~~le~Lvt-----------------------------~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 316 SKGV---PSVFKDLRSLYKDPE---KV-AFLEKLVT-----------------------------SYQHSLSGTGMFNFL 359 (700)
T ss_pred hcCC---CchhhhhHHHHhchh---Hh-HHHHHHHH-----------------------------HHHhhcccccCCCcc
Confidence 1111 222222222222111 11 12222221 1111111111
Q ss_pred --CCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh
Q 001392 516 --NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593 (1088)
Q Consensus 516 --~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 593 (1088)
...+.+....+.++.++.-+...|+++.|..+...++...|..++.|+.-|.++...|++++|..++..+.+++-.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 011233345667788899999999999999999999999999999999999999999999999999999999987777
Q ss_pred hHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 594 NALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
.+-...+...++.++.++|..+..+..+.+
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 777788888999999999999988766544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-18 Score=191.52 Aligned_cols=387 Identities=20% Similarity=0.187 Sum_probs=312.6
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 001392 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLG 417 (1088)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~~~~~~~la 417 (1088)
+...+|-.+...+...|++..+.++|++++...-...+.|+.++.+|...|.-..|+.+++..+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4455677788888999999999999999998877788999999999999999999999999999988 88898888888
Q ss_pred HHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcchhhhhc
Q 001392 418 ELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG-----------EFESAHQSFKDALGDGIWLTLL 484 (1088)
Q Consensus 418 ~l~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~l~~al~~~~~~~~~ 484 (1088)
.++ ..+.+++++.+..+++...........+..+..+|.+|...- ...++++.++++++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-------- 472 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-------- 472 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh--------
Confidence 877 889999999999999997655555566788888888876542 24556666666666
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC-CcHHHHH
Q 001392 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYL 563 (1088)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~ 563 (1088)
..|.++.+.++++.-|..+++...|....+.+++.++ +.+.+|.
T Consensus 473 -----------------------------------~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh 517 (799)
T KOG4162|consen 473 -----------------------------------FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH 517 (799)
T ss_pred -----------------------------------cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH
Confidence 5678889999999999999999999999999999955 5689999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCC-------------------
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD------------------- 624 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------- 624 (1088)
.++.++...+++..|+.+...++.-.|.|.........+-...++.++|+.+....+....
T Consensus 518 LLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 518 LLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 9999999999999999999999999988766555555555555665555555444332211
Q ss_pred -------------------------------------------CCCh--H----HHHHhhhHHHHHHhhhhhcChhHHHH
Q 001392 625 -------------------------------------------GKDS--Y----ATLSLGNWNYFAALRNEKRAPKLEAT 655 (1088)
Q Consensus 625 -------------------------------------------~~d~--~----a~~~lg~~~y~~~~~~~~~~~~~~~~ 655 (1088)
.++. + .|...+.. |... +
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~-~~~~------------~ 664 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL-FLLS------------G 664 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHH-HHhc------------C
Confidence 0000 0 01111111 2222 6
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHH
Q 001392 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735 (1088)
Q Consensus 656 ~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~ 735 (1088)
+.+.|..++.++-.++|..++.++..|.++...|...+|...|..++..+| +++.+...+|.++.+.|+..-|..
T Consensus 665 ~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-----~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 665 NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-----DHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhCCcchHHH
Confidence 777888888888888999999999999999999999999999999999888 778889999999999998888888
Q ss_pred --HHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhH
Q 001392 736 --MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 736 --~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
++..+++. ++.++.+|++||.++.+.|+.+.|..+|..++++.+.+|...|.
T Consensus 740 ~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 740 RSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 88888888 77888999999999999999999999999999999888876553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-19 Score=197.70 Aligned_cols=486 Identities=16% Similarity=0.122 Sum_probs=344.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
++..+.-.+..++|...+++.+.++.. .|..++++...|..+...|+-++|..+...++. .++....+|..+|.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHHH
Confidence 333344455677888888888888863 466678889999999999999999999999987 77888889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
++....+|++|+.+|..++.+.|+|..+|..++.+..++++++-....-.+.++..|..-..|+.++..+ ..|++..|.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhh
Q 001392 430 DAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1088)
..++...+.......... .+.......++...|.+++|++.+..--..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----------------------------- 214 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----------------------------- 214 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-----------------------------
Confidence 998888776542111111 244455567777888888888887654331
Q ss_pred hhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 001392 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEA 585 (1088)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~l~~a 585 (1088)
--+........+.++..++++++|..+|...+..+|++...+..+-.++..-.+.-++. ..|...
T Consensus 215 --------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 215 --------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred --------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11234455567889999999999999999999999999988888877775333333344 444443
Q ss_pred HHHCCCChh--------------------------------HHHhhhhhhhcccchHHHHHHHHHhh-------hcC---
Q 001392 586 LKVNGKYPN--------------------------------ALSMLGDLELKNDDWVKAKETFRAAS-------DAT--- 623 (1088)
Q Consensus 586 l~~~p~~~~--------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~--- 623 (1088)
-+..|.... +...+-.+|-. ... ..++++.+ ...
T Consensus 281 s~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k-~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEK-VAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhH-hHHHHHHHHHHHhhcccccCC
Confidence 333332211 11111111111 000 01222221 100
Q ss_pred C----C--CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHH
Q 001392 624 D----G--KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1088)
Q Consensus 624 ~----~--~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~ 697 (1088)
+ + ..+.+ .++.. |+...+.... |+++.|..+.+.++..-|+-+..+...|.++.+.|.+++|..+
T Consensus 357 ~~~D~~~~E~Ptt--llWt~-y~laqh~D~~------g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 357 NFLDDGKQEPPTT--LLWTL-YFLAQHYDKL------GDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred CcccccccCCchH--HHHHH-HHHHHHHHHc------ccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0 0 01111 11222 3333222222 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHH--HHHHHHHccCHHHHHHHHHHHHHHhcCCC-C----------HHHHHHHHHHHHhhc
Q 001392 698 FTQVQEAASGSVFVQMPDVWIN--LAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----------AQILLYLARTHYEAE 764 (1088)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~--la~~~~~~g~~~~Ai~~~~~al~~~~~~~-~----------~~~l~~La~~~~~~g 764 (1088)
+..+.+.+ .++.++| .|...++.++.++|.++.-. |.... + ......-|.+|+++|
T Consensus 428 l~ea~elD-------~aDR~INsKcAKYmLrAn~i~eA~~~~sk----FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 428 LDEAQELD-------TADRAINSKCAKYMLRANEIEEAEEVLSK----FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred HHHHHhcc-------chhHHHHHHHHHHHHHccccHHHHHHHHH----hhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 99999975 5666666 68888999999999988544 42222 1 122223488999999
Q ss_pred cHHHHHHHHHHHHHhCCCC--hhHHhHHHHHHHHHHHhhhhh------cCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 765 QWQDCKKSLLRAIHLAPSN--YTLRFDAGVAMQKFSASTLQK------TRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 765 ~~~~A~~~l~~al~~~p~~--~~~~~nla~~~~~~~~~~l~~------~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
++..|++-|..+-+.+-.- ...-|+. .|+.++.-+++-. ..++-+.. ......|++++-.|.+.+
T Consensus 497 k~g~ALKkfh~i~k~~~~~~~dqfDfht-yc~rk~tlrsYv~ll~~~d~L~~~p~y---~~Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 497 KLGLALKKFHEIEKHYKTWSEDQFDFHT-YCMRKGTLRSYVELLEWEDNLRSSPYY---LRAAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhHHH-HHHhcCcHHHHHHHHHHHHhhccChHH---HHHHHHHHHHHHHHhcCc
Confidence 9999999888877776543 3334443 3456665544332 33333333 334566888888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=214.92 Aligned_cols=204 Identities=20% Similarity=0.200 Sum_probs=102.3
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
+|..+..|..+|.||..+++++.|++.|++++.++|.+..+|..+|.-+.....++.|..+|+.++..+|.+..+|+.+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.+|+++++++.|.-.|++++.++|. ....++.+|.+ +... |+.++|+.+|++|+.++|.|+...+.
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~-~~~~------------k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRI-QHQL------------KRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHH-HHHh------------hhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 5555555555555555555555444 33334444444 4444 44555555555555555555555555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 681 la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
.|.++...+++++|+..++++.+..| +...+++.+|.+|.++|+.+.|+..|--|+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP-----~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVP-----QESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555555555555555555554444 44444455555555555555555544444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-20 Score=213.95 Aligned_cols=301 Identities=20% Similarity=0.119 Sum_probs=232.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGIG 204 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~lg 204 (1088)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...+... ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999988543321 24678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH
Q 001392 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF 279 (1088)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~ 279 (1088)
.+|...|+++.|...|.++++.+|.+..++..++.++...|+ +++|+..+.+++...|.+.. .+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 99999999999988876532 3455677777
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhHhhHHHHHHHcCCH
Q 001392 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 358 (1088)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~ 358 (1088)
..|+++.|+.++.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 7777777777777777543 445567777777777777777777777777752 2222 34456677777777777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 001392 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI---SSDTGAALDAFKTA 435 (1088)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~---~~~~~~A~~~~~~a 435 (1088)
++|+..+++++...|+...+ ..++.++...|++++|+.+|.+++...|++......+...+. .|+..+++..++++
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 77777777777777765433 677777777777777777777777777776655444444331 34666777777666
Q ss_pred HHH
Q 001392 436 RTL 438 (1088)
Q Consensus 436 ~~~ 438 (1088)
++.
T Consensus 345 ~~~ 347 (389)
T PRK11788 345 VGE 347 (389)
T ss_pred HHH
Confidence 653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-18 Score=180.89 Aligned_cols=499 Identities=16% Similarity=0.204 Sum_probs=397.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
..|+..++.+.-+...|+..|.--..++++..|...|+++|..+..+...|+..+.+-++.+....|..++++++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34566666666777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1088)
. ...|+....+--.+|+...|.++|++.+...| +..+|......-+..+. ++.|...|++.+-.+| ....|...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP-~v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHP-KVSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecc-cHHHHHHH
Confidence 8 67788888888999999999999999999998 56788888888888777 9999999999988886 45678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1088)
+..-...|+...+..+|+.++............+...|..-..+..++.|..+|.-++...|.+. ....+-.+...-.+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r-aeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR-AEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHH
Confidence 99999999999999999999987766666666777788888889999999999999998654321 12223333333334
Q ss_pred cCCH---HHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHH
Q 001392 355 LGDF---RSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---------AQAFIDLG 417 (1088)
Q Consensus 355 ~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~---------~~~~~~la 417 (1088)
-|+. +.++ -.|+..+..+|.+.++|+....+....|+.+.-.+.|++++...|.. ...|++.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 4543 3343 35778888999999999999999999999999999999999887754 23444444
Q ss_pred HHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhh
Q 001392 418 ELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495 (1088)
Q Consensus 418 ~l~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 495 (1088)
..- ...+.+.+..+|+.++++.|... -.-+.+|...+....++.+...|.+.+-.++..+|
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkk-FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP---------------- 435 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKK-FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP---------------- 435 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC----------------
Confidence 433 67899999999999999887632 22367888889999999999999999999998665
Q ss_pred hhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCh
Q 001392 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575 (1088)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 575 (1088)
...+.-....+-.++++++....+|++.+.-.|.+..+|...|.+-..+|+.
T Consensus 436 ----------------------------K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 436 ----------------------------KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred ----------------------------chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 3344455566677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCChh--HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcCh---
Q 001392 576 QLSIELVNEALKVNGKYPN--ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP--- 650 (1088)
Q Consensus 576 ~~A~~~l~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~--- 650 (1088)
+.|..+|.-++....-+.. +|-.+..+-...|.++.|..+|++.+...+. .-++++.+.. -..... .....
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~f-e~s~~~-~~~~~~~~ 563 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKF-EASASE-GQEDEDLA 563 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHH-hccccc-cccccchh
Confidence 9999999999876543332 6677888888999999999999999998654 2355555543 111111 11110
Q ss_pred --hHHHHHHHHHHHHHHHHHh
Q 001392 651 --KLEATHLEKAKELYTRVIV 669 (1088)
Q Consensus 651 --~~~~~~~~~A~~~~~~al~ 669 (1088)
.........|..+|+.+..
T Consensus 564 ~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 564 ELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhcchhHHHHHHHHHHHHHH
Confidence 0123466677777776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=217.84 Aligned_cols=272 Identities=19% Similarity=0.176 Sum_probs=152.5
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~ 423 (1088)
..+..|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------ 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------
Confidence 34455666666666666777777666666666666666666666666666666666666553221110
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhh
Q 001392 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (1088)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1088)
....++..+|.++...|+++.|+.+|.+++.
T Consensus 105 ----------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~--------------------------- 135 (389)
T PRK11788 105 ----------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVD--------------------------- 135 (389)
T ss_pred ----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc---------------------------
Confidence 0023344555555666666666666655554
Q ss_pred hhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHcCChHHH
Q 001392 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLS 578 (1088)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A 578 (1088)
..|....++..++.++...|++++|+..+..++...|... ..+..++.++...|++++|
T Consensus 136 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 136 ----------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred ----------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 2233445555566666666666666666666655554431 2344555555566666666
Q ss_pred HHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHH
Q 001392 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 658 (1088)
Q Consensus 579 ~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 658 (1088)
+.+|.+++..+|.+..++..+|.++...|++++|+..|++++...|.....++..++.+ |... |+++
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~ 266 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEA 266 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHH
Confidence 66666666666655555555666666666666666666555554443223334444555 5544 5555
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 659 ~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
+|+..+++++..+|+...+ ..++.++...|++++|+.+|.+++...|
T Consensus 267 ~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 5555555555555544332 5555555555555555555555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=182.86 Aligned_cols=344 Identities=18% Similarity=0.187 Sum_probs=277.7
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.++.-++.+|..++..|++..|+..|..++..+|++..+++.+|.+|+..|+-..|+.-+.+++++.|+. ..+++..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHHh
Confidence 466777889999999999999999999999999999999999999999999999999999999999999999 7789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
|.++.++|.++.|..-|..++..+|++... ...++.+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------- 155 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------- 155 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------------------------------------
Confidence 999999999999999999999999965432 2222111100
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
..+......++..|++..|+.+....+. ..|..+..+...+.+|...|....
T Consensus 156 -------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 156 -------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred -------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHH
Confidence 1122233345567888888888888887 667788888899999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001392 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~ 440 (1088)
||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-. |++..++.+
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----------------YKklkKv~K 271 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----------------YKKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654432 222221111
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCC
Q 001392 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (1088)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1088)
. ..-+.-....++|.+++...++.+...|. .
T Consensus 272 ~----------les~e~~ie~~~~t~cle~ge~vlk~ep~---------------------------------------~ 302 (504)
T KOG0624|consen 272 S----------LESAEQAIEEKHWTECLEAGEKVLKNEPE---------------------------------------E 302 (504)
T ss_pred H----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------c
Confidence 1 00122234557788888888888874321 1
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
.+........+..|+..-+++.+|+..+..+|..+|+++.++...+..|.....|+.|+..|++++..++++..+...
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 222334445567788899999999999999999999999999999999999999999999999999999998776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=185.60 Aligned_cols=332 Identities=17% Similarity=0.215 Sum_probs=279.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHH
Q 001392 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (1088)
Q Consensus 38 ~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~ 117 (1088)
+..+-.+.++..++..|++.+|+..+..+++.+|+. ..+++.-+.+|+.+|+.. -|+.-|
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk-----------~al~Dl 95 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSK-----------AALQDL 95 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCc-----------cchhhH
Confidence 455678899999999999999999999999887754 347788899999999987 789999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCChHHHH
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---------------ALLGQACVEFNRGRYSDSL 182 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~la~~~~~~g~~~~Al 182 (1088)
.+++.+.|+...+.+.+|.+++++|.+++|..-|+.++..+|++.. .+......++..|++..|+
T Consensus 96 ~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 96 SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 9999999999999999999999999999999999999999996521 2344455667789999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
.+...++++.|.+ ..++...+.||...|....|+.-+..+-++..++.+.++.++.+++..|+ ...++..++.+++
T Consensus 176 ~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLK 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHc
Confidence 9999999999999 78899999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCc
Q 001392 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEF 341 (1088)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~ 341 (1088)
++|++-..+-.. ....+..+.++. +......++|.+++...++.++.-+. .+-.
T Consensus 252 ldpdHK~Cf~~Y-------KklkKv~K~les------------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 252 LDPDHKLCFPFY-------KKLKKVVKSLES------------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cCcchhhHHHHH-------HHHHHHHHHHHH------------------HHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 999987544321 112222222222 23345678899999999999873222 2223
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
...+..+..|+...+++.+|+..+..++..+|+++.++...+.+|+-...|+.|+..|+++.+.++++..+.-.+-.
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 33455678889999999999999999999999999999999999999999999999999999999998777655433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=195.69 Aligned_cols=471 Identities=16% Similarity=0.140 Sum_probs=295.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
....|...+..|+|+.|+.+|..++.++|.|...+.....+|...|+|.+|+.--.+.+.++|.. +..|..+|..+.-+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
|+|++|+..|.+.|+.+|+|.....+|+.++... + .+...|. .|..+..++..-... +-.....
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~-----~-~~~~~~~--------~p~~~~~l~~~p~t~--~~~~~~~ 147 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED-----Y-AADQLFT--------KPYFHEKLANLPLTN--YSLSDPA 147 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH-----H-Hhhhhcc--------CcHHHHHhhcChhhh--hhhccHH
Confidence 9999999999999999999999999999888222 1 1122221 222222221110000 0001111
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH-----HHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-----ALTNF 365 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~ 365 (1088)
|..++......|.....+..- ....+|.-.+..+-. . .....+......+.... .....
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d-------~r~m~a~~~l~~~~~-------~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLND-------PRLMKADGQLKGVDE-------L--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred HHHHHHHhhcCcHhhhccccc-------HHHHHHHHHHhcCcc-------c--cccccccccCCCCCCcccccCCCCCcc
Confidence 122222222222221111111 111111111111000 0 00000000000000000 00000
Q ss_pred HHHH--HhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc
Q 001392 366 EKVL--EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA 442 (1088)
Q Consensus 366 ~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~ 442 (1088)
.... .....-......+|....+..++..|+..|.+++.++ .+...+.+.+.+| ..+.+...+.....+++.....
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 0000 0000112345567777777788888888888888888 7777777777777 7777777776666665543221
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCC
Q 001392 443 GEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (1088)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1088)
... .-...+..+|..|...++++.|+.+|.+++....
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R----------------------------------------- 329 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR----------------------------------------- 329 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-----------------------------------------
Confidence 000 0123334466677778888888888888776210
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
. ..++......+++........-.+|.-......-|..++..|+|..|+..|.+++..+|+++.++.+.+
T Consensus 330 ---t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 330 ---T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred ---C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 0 334444455666666666666666766665666677777788888888888888888888888888888
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.+|.+.|.+..|+...+.++++.|. ..-+++.-|.+ +..+ ++|++|++.|.+++..+|.+..+..+
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 8888888888777777777777665 55566666766 6666 77888888888888888887777777
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 001392 681 AGVVLAEKGQFDVSKDLFTQ 700 (1088)
Q Consensus 681 la~~l~~~g~~~~A~~~~~~ 700 (1088)
+..++..+.......++.+.
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHh
Confidence 77766654333333444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-18 Score=191.42 Aligned_cols=433 Identities=18% Similarity=0.145 Sum_probs=341.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1088)
+++.+|-.+...+...|+|..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |.++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5778888889999999999999999999998887888999999999999999999999999999988 77767777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhhch--------HHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
..|+...+.+++++.+-.+++.... -.+.++..+|.+|...-. .....++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 8888999999999999999998432 135567777877765422 123678999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
.++++.-|...++...|......++... ....+.+|..++.++...+++..|+.+...++... +.+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhh
Confidence 9999999999999999999999999863 24456899999999999999999999999999854 344444555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH---------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH---------IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~---------~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~ 421 (1088)
+-...++.++|+..+...+........+...++. +....++..+|+..+.++ ..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l--------------s~l~a 621 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL--------------SSLVA 621 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH--------------HHHHH
Confidence 6677899999999999988876544443333331 111111222222222222 11110
Q ss_pred cCCHHHHHHHHHHHHHHHHhc----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 422 SSDTGAALDAFKTARTLLKKA----GEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
.+...+. +... +|.. +... ...+|...+..+...++.++|..++.++..
T Consensus 622 -~~~~~~~--se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----------------- 678 (799)
T KOG4162|consen 622 -SQLKSAG--SELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----------------- 678 (799)
T ss_pred -hhhhhcc--cccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-----------------
Confidence 0000000 0000 1110 0000 135677788889999999999999999887
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1088)
..|..+.+++..|.++...|+..+|...|..++.++|+++.+...+|.++...|
T Consensus 679 --------------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 679 --------------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred --------------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 457788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHH--HHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCC
Q 001392 574 NLQLSIE--LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 626 (1088)
Q Consensus 574 ~~~~A~~--~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 626 (1088)
+..-|.. ++..+++++|.++++|+.+|.++.+.|+...|..+|..++++.++.
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9888888 9999999999999999999999999999999999999999987663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-16 Score=167.67 Aligned_cols=474 Identities=16% Similarity=0.137 Sum_probs=370.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
.+.|+..+..+.-+...|+..|.--..++++..|..+|+++|..+..+ ..+|+..+.+-++......|..+|.+++.+-
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 355677777777788999999999999999999999999999999887 6789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
|.-...|+....+--..|+ +.-|.++|.+.+...|+ ..+|......-.+-+..+.|..+|++.+-.. .....
T Consensus 138 PRVdqlWyKY~ymEE~LgN---i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~H----P~v~~ 209 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGN---IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVH----PKVSN 209 (677)
T ss_pred chHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheec----ccHHH
Confidence 9999999998888888888 99999999999999885 5688888888899999999999999988543 34578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN--CETLKALGHI 385 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~ 385 (1088)
|...++.-...|+..-|..+|..++..+++.......+...|..-..+..++.|..+|.-++..-|.+ ...+..+...
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 89999999999999999999999999776655555556667777778889999999999999998887 4455544444
Q ss_pred HHhcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC----HHHHH
Q 001392 386 YVQLGQI---EKAQ-----ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP----IEVLN 452 (1088)
Q Consensus 386 ~~~~g~~---~~A~-----~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~ 452 (1088)
--+-|+. +.++ --|++.+..+|-+.++|+.+..+. ..|+.+.-.+.|++|+...|....... ..+|.
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 4455653 3333 356778889999999999999999 889999999999999986554221111 11222
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 453 NIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 453 ~l~~-~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
+.+. .-....+.+.+.++|+.++..-|- ..-..+.+|...
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPH---------------------------------------kkFtFaKiWlmy 410 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPH---------------------------------------KKFTFAKIWLMY 410 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCc---------------------------------------ccchHHHHHHHH
Confidence 2221 123568888899999988885321 122356778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHH
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
|.....+.+...|.+++-.++..+|.. ..+-....+-.++++++....+|.+.+..+|.+..+|..+|.+-..+|+++.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 888888899999999999999988874 4445555667788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHH
Q 001392 612 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1088)
Q Consensus 612 A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 683 (1088)
|..+|.-+++...- +..-+ |... |... +...|.+++|..+|++.|...+... +|...|.
T Consensus 490 aRaifelAi~qp~l-dmpel--lwka-YIdF--------Ei~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 490 ARAIFELAISQPAL-DMPEL--LWKA-YIDF--------EIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHHhcCccc-ccHHH--HHHH-hhhh--------hhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 99999988875432 33322 2222 3332 1223778888888888887776544 4444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-17 Score=171.63 Aligned_cols=313 Identities=16% Similarity=0.093 Sum_probs=252.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1088)
+.+.+..++...|...+--+-. ...-+.++..+..+|.+++..|++.+|+..|+++.-++|.+...+-..|.++...|+
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 3334444444444444433221 114567778888899999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001392 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (1088)
++.-..+...++........-|+.-+.++ ..+++..|+.+-+++++..+. ....+...|.++...|+.++|+-.
T Consensus 282 ~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHHHH
Confidence 99888888888888766666666666665 888999999999999887554 367788889999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHH
Q 001392 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550 (1088)
Q Consensus 471 l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1088)
|+.+.. ..|.....|..|..+|...|.+.+|...-..
T Consensus 357 FR~Aq~-------------------------------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 357 FRTAQM-------------------------------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHh-------------------------------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 999887 5567888899999999999999999999999
Q ss_pred HHHHcCCcHHHHHHHH-HHH-HHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001392 551 ILFKYQDYVDAYLRLA-AIA-KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1088)
Q Consensus 551 ~l~~~p~~~~~~~~la-~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~ 628 (1088)
++...|.++.++..+| .++ ..-.--++|.+++++++.++|....+...++.++...|.+..++..+++.+...+ |.
T Consensus 394 ~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~ 471 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DV 471 (564)
T ss_pred HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--cc
Confidence 9999999988888886 333 3334457799999999999999999999999999999999999999999988876 55
Q ss_pred HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc
Q 001392 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1088)
Q Consensus 629 ~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~ 688 (1088)
..+..||++ +... +.+.+|+..|..++.++|++..+.-++-.+-...
T Consensus 472 ~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 472 NLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 667779998 8877 8899999999999999999888777765554433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-17 Score=170.31 Aligned_cols=416 Identities=14% Similarity=0.093 Sum_probs=319.2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001392 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1088)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1088)
.+...+..+..+.+|...++-+.|+........ ....+.....++..+..-++-.++.-.+..++...|- ++-
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~----t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~---aL~ 165 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP----TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM---ALQ 165 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCc----cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch---HHH
Confidence 455667788899999999999999988766542 2334444555666666666655666666666665443 332
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001392 381 ALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQAFIDL-GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVI 457 (1088)
Q Consensus 381 ~la~~~~-~~g~~~~A~~~~~k~l~~~p~~~~~~~~l-a~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 457 (1088)
.++.++. ..+-++.+-... .++...|..+..|..+ +... ..++...|...+-.+... ...+.+..++..+|.+
T Consensus 166 ~i~~ll~l~v~g~e~~S~~m-~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~---~~lr~NvhLl~~lak~ 241 (564)
T KOG1174|consen 166 VIEALLELGVNGNEINSLVM-HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN---TTLRCNEHLMMALGKC 241 (564)
T ss_pred HHHHHHHHhhcchhhhhhhh-hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh---ccCCccHHHHHHHhhh
Confidence 2222221 112222222221 2234455554444332 2222 344444444433322211 1223357889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHh
Q 001392 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1088)
Q Consensus 458 ~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1088)
++..|++.+|+..|+++.. .+|......-..|.++..
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~-------------------------------------------~dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLC-------------------------------------------ANPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred hhhhcCchHHHHHHHHHhh-------------------------------------------CChhhhhhHHHHHHHHHh
Confidence 9999999999999999887 567888888889999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHH
Q 001392 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1088)
.|+++.-..+...++.+......-|+.-+......+++..|+.+..+++..+|.+..++...|.++...|+.++|.-.|+
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 99999999999888888877778888888889999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHH-HHHHhc-CCchHHH
Q 001392 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEK-GQFDVSK 695 (1088)
Q Consensus 618 ~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la-~~l~~~-g~~~~A~ 695 (1088)
.+..+.|. +.-.+-.|..+ |+.. |.+.+|.-.-+.++..-|.+..++..+| .+++.. .--++|.
T Consensus 359 ~Aq~Lap~-rL~~Y~GL~hs-YLA~------------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 359 TAQMLAPY-RLEIYRGLFHS-YLAQ------------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HHHhcchh-hHHHHHHHHHH-HHhh------------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 99998876 66777778888 8888 9999999999999999999999998886 555544 3457899
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
.++++.+...| ....+...++.++...|.+..+|.++++.|..| +|......||.++...+.+++|+.+|..
T Consensus 425 kf~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~---~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 425 KFAEKSLKINP-----IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF---PDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHhhhccCC-----ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc---cccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999998 677888999999999999999999999999975 5678899999999999999999999999
Q ss_pred HHHhCCCChhHHhHHHH
Q 001392 776 AIHLAPSNYTLRFDAGV 792 (1088)
Q Consensus 776 al~~~p~~~~~~~nla~ 792 (1088)
|+.++|++....-.+-.
T Consensus 497 ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 497 ALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHhcCccchHHHHHHHH
Confidence 99999998665544433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-16 Score=160.39 Aligned_cols=452 Identities=15% Similarity=0.169 Sum_probs=278.0
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHH
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~ 251 (1088)
+....+|..|+.+++-.+..+......+...+|.|++++|+|++|...|.-+.+.+.-+...+++|+.+++..|. |.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HH
Confidence 345567777777776666554444345566777777777777777777777766555566667777766666666 66
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 252 KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1088)
Q Consensus 252 ~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1088)
+|.....+ .|+++.....+-. +.++.|+-++-.. |...
T Consensus 109 eA~~~~~k----a~k~pL~~RLlfh-------------------------------------lahklndEk~~~~-fh~~ 146 (557)
T KOG3785|consen 109 EAKSIAEK----APKTPLCIRLLFH-------------------------------------LAHKLNDEKRILT-FHSS 146 (557)
T ss_pred HHHHHHhh----CCCChHHHHHHHH-------------------------------------HHHHhCcHHHHHH-HHHH
Confidence 65554433 2333322222222 2223333332222 2222
Q ss_pred HHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 001392 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1088)
Q Consensus 332 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~ 411 (1088)
++ +...-...++.+.+..-.|++|+..|.+++..+|+.......++.||.++.-++-+.+++.-.+...|+++.
T Consensus 147 Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 147 LQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred Hh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 22 122345667888888888999999999999999988888889999999999999999999999999999988
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001392 412 AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (1088)
Q Consensus 412 ~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 488 (1088)
+....+... ..|+..++ -..... .+.... |..+..+++.-+-
T Consensus 221 A~NLkacn~fRl~ngr~ae~--E~k~la---dN~~~~------------------~~f~~~l~rHNLV------------ 265 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAED--EKKELA---DNIDQE------------------YPFIEYLCRHNLV------------ 265 (557)
T ss_pred HHHHHHHHHhhhhccchhHH--HHHHHH---hccccc------------------chhHHHHHHcCeE------------
Confidence 887776654 33333222 111111 111000 1111111110000
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001392 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568 (1088)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 568 (1088)
--.+-+.|++.+-.++..- +++..+|+..
T Consensus 266 ------------------------------------------------vFrngEgALqVLP~L~~~I---PEARlNL~iY 294 (557)
T KOG3785|consen 266 ------------------------------------------------VFRNGEGALQVLPSLMKHI---PEARLNLIIY 294 (557)
T ss_pred ------------------------------------------------EEeCCccHHHhchHHHhhC---hHhhhhheee
Confidence 0012233333333333322 2445555555
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccc-------hHHHHHHHHHhhhcCCCC-ChHHHHHhhhHHHH
Q 001392 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD-------WVKAKETFRAASDATDGK-DSYATLSLGNWNYF 640 (1088)
Q Consensus 569 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~-d~~a~~~lg~~~y~ 640 (1088)
|.++++..+|+.+++. ++|..|.-+...|.++...|+ ..-|...|+-+=...... .....-+++.. ++
T Consensus 295 yL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FF 370 (557)
T ss_pred ecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HH
Confidence 5566666666555443 455555555555555555544 222333333221111111 12233456666 77
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 001392 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720 (1088)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 720 (1088)
.. .+++..+.++..+-...-++....++++.+.+..|++.+|.++|-++..-.- .+.......|
T Consensus 371 L~------------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~L 434 (557)
T KOG3785|consen 371 LS------------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSML 434 (557)
T ss_pred HH------------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHH
Confidence 77 8899999998888887778888888999999999999999999988754321 1334455678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 721 a~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
|.||...|++.-|..+| ++..........+..++..||+.+.+=-|.+.|...-.++|+.
T Consensus 435 ArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999999999999886 4432122225667788999999999999999999888888864
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=196.40 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
..++.+++..|++++|+.++.+.+... .+|.++..|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 356999999999999999997765421 146788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHH
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
|.+....++++.|+..|++++..++..+..+..++.+ ...+++.+|+.++..+....+ ++..+..+..++...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999888 799999999999999887664 57777888888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCC
Q 001392 612 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (1088)
Q Consensus 612 A~~~~~~al~~~~-~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~ 690 (1088)
+...+..+....+ ..+...+..+|.+ |... |++++|+.+|++++..+|+++.+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776432 3467788889998 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHH
Q 001392 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (1088)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~ 770 (1088)
.+++..++.......| .++..|..+|.+|..+|++++|+.+|+++++. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 77889999999999999999999999999998 7889999999999999999999999
Q ss_pred HHHHHHHHh
Q 001392 771 KSLLRAIHL 779 (1088)
Q Consensus 771 ~~l~~al~~ 779 (1088)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999888753
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=165.88 Aligned_cols=418 Identities=16% Similarity=0.129 Sum_probs=302.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHH-HHHhC--CCC-----
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKR-ALQVH--PSC----- 195 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~-al~~~--p~~----- 195 (1088)
+.++..|++...|+...+++..+++..|.+-.+|...++++-..- +--.|...++. .+... |..
T Consensus 8 ~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p 87 (478)
T KOG1129|consen 8 YFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTP 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCC
Confidence 567899999999999999999999999999999999988876532 22244444432 22221 111
Q ss_pred -------hhHH-----------HHHHHHH-HHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhchHHhHHHHH
Q 001392 196 -------PGAI-----------RLGIGLC-RYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGM 254 (1088)
Q Consensus 196 -------~~~~-----------~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~Al 254 (1088)
...+ ....+.. -.+-|-.+.|+..-..+-.-.|- ...-...++...+..+..+
T Consensus 88 ~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG------ 161 (478)
T KOG1129|consen 88 FTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDG------ 161 (478)
T ss_pred CCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCc------
Confidence 0000 0000011 11223344444322222111110 0011122232222222111
Q ss_pred HHHHHHHHhCCC----CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCCc---hHHHHHHHHHHHhcCCHH
Q 001392 255 EKMQRAFEIYPY----CAMA-LNYLANHFFFTGQHFLVEQLTETALAVTN----HGPTK---SHSYYNLARSYHSKGDYE 322 (1088)
Q Consensus 255 ~~~~~al~~~p~----~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~---~~~~~~la~~~~~~g~~~ 322 (1088)
-|-.+-.++|. .+.+ -...-.+|+..++...|..+....+...- ..... -..-..+|.||.+.|.+.
T Consensus 162 -~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r 240 (478)
T KOG1129|consen 162 -KFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPR 240 (478)
T ss_pred -ceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChh
Confidence 12222233332 2222 22233456667777777766555543211 11111 122345899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1088)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~ 402 (1088)
.|.+.++.++.. ...+..+..|+.+|.+..+...|+..|...+...|.++..+..++.++..+++.+.|.++|+.+
T Consensus 241 ~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 241 RAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred hhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 999999999964 4466778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001392 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1088)
Q Consensus 403 l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~ 481 (1088)
++.+|.+..+.-.++.-| ..++++-|+.+|++.+.+-- .++++++|+|.|++..++++-++..|++++....
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-- 389 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-- 389 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc--
Confidence 999999999999999988 89999999999999998733 3589999999999999999999999999997421
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH
Q 001392 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (1088)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (1088)
.+.....+|+|+|.+....|++..|...|+-++..+|++..+
T Consensus 390 --------------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 390 --------------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred --------------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 234467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc
Q 001392 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1088)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~ 605 (1088)
+++|+.+..+.|+..+|..+++.+....|.-.+..++++.+-..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 99999999999999999999999999999988877777655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-16 Score=181.06 Aligned_cols=303 Identities=14% Similarity=0.051 Sum_probs=235.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
.+..|.+.+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..+|.++.+..|++...+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 36678889999999999999999999999888899999999999999999999999999999988445666679999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1088)
|+++.|...++++++..|+++.++..++.++...|+ ++.|+..+.+..+..+.++.... .....+...+....
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999887554443322 11122233333333
Q ss_pred HHHHHHHHHhhcC-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh--HhhHHHHHHHcCCHHHHHH
Q 001392 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSALT 363 (1088)
Q Consensus 287 A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~ 363 (1088)
+...+..+....+ ..+..+..+..++..+...|++++|...+.++++.. |+.... ........+..++...++.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 4445555544321 223567888888889999999999999999988743 333221 1222333344577888888
Q ss_pred HHHHHHHhCCCcH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 364 NFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 364 ~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
.+++.++..|+++ ..+..+|.++.+.|++++|..+|+ .++...|++.. +..++.++ ..|+.++|..++++++..
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888889888 888888999999999999999998 56777776655 45888888 888889998888888765
Q ss_pred HH
Q 001392 439 LK 440 (1088)
Q Consensus 439 ~~ 440 (1088)
.-
T Consensus 400 ~~ 401 (409)
T TIGR00540 400 ML 401 (409)
T ss_pred Hh
Confidence 43
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=191.25 Aligned_cols=263 Identities=24% Similarity=0.311 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
+.+|.+++..|++++|+.++.+.+... |++ +..+..+|.+.+.+++++.|+.+|++++..++.++..+..++.+ ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 355777777777777777775544433 444 55666677777777777777777777777777766666666666 45
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
.++ +.+|+.++.++++..+ ++..+..++.++...++++.+..++..+.... ..+..+..|..+|.++...|++++
T Consensus 90 ~~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 90 DGD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555 7777777777666543 44555566666777777777777777766422 234556777788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
|+..|++++. ..|.+..+...++.+++..|++.++...+.......|.++..+..+|.+|..+|++++|+.+|++++
T Consensus 165 A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 165 ALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 8888888887 4566777777788888888888888888777777777777788888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 404 KIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 404 ~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
..+|+++.++..+|.++ ..|+.++|..++.++...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 88888888888888888 888888888887776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=190.36 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCH
Confidence 356666666666666666666666666655432 23566666666666666666 55566666666666666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1088)
++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666666666666666666666666666 66666666666666666665555555555666666667666666
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
++... +|..+..+..+|.++...|++++|...+.++.. ..|....+...++..|...|+ .|...++.+++...
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 65432 244456667777777777777777777766654 445555566666666666663 66666666555432
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
....-...+..+|.-.|+.+.+... .++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222222366666667777666666 555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=165.45 Aligned_cols=275 Identities=17% Similarity=0.183 Sum_probs=243.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 136 QLLLAKGEVEQASSAFKIVLEAD---RDN-------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~~-------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
.+++..++...|-..+...+..+ |.. -.-...+|.||++.|-+.+|.+.++..+...|.. +.+..+..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 34556677777776666655442 211 1223568999999999999999999999998874 67889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+..+...++..|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
.|+.+|.++++..- ..++.+.++|.|++..++++-++..|.+++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 99999999998764 445999999999999999999999999999866566677889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
+-++..+|++.+++++||.+-.+.|+.+.|..++..+....|.-....++++.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 99999999999999999999999999999999999999999987776666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-13 Score=148.74 Aligned_cols=659 Identities=13% Similarity=0.109 Sum_probs=407.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCHH-HHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh-hhhhhhHHHHHHH
Q 001392 36 EQAPLDLWLIIAREYFKQGKVE-QFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE-TKQREKEEHFILA 113 (1088)
Q Consensus 36 e~~~~~~~~~la~~y~~~g~~~-~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~-~~~~~r~~~~~~A 113 (1088)
.|-++..|..... +++|... .-..++++++.. ++++ +.+..-|+..-... ...-.-+..|..-
T Consensus 23 np~svk~W~RYIe--~k~~sp~k~~~~lYERal~~-----lp~s--------ykiW~~YL~~R~~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 23 NPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKE-----LPGS--------YKIWYDYLKARRAQVKHLCPTDPAYESV 87 (835)
T ss_pred CchhHHHHHHHHH--HHccCChHHHHHHHHHHHHH-----CCCc--------hHHHHHHHHHHHHHhhccCCCChHHHHH
Confidence 4556778887653 3344443 445567777654 2222 11222233211100 0000114556777
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
-.+|++++-.-..-|..|+.....+..+|+...-...|.++|..-|- +...|-......-..+-..-++..|++.|+.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 78888888877788899999999999999999999999999988773 3455655556667778889999999999999
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
.|... -.....+...++.++|.+.+...+.. .+.+...|..+..+..+..+...--.--..++..+...
T Consensus 168 ~P~~~----eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 APEAR----EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred CHHHH----HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 99872 33456778899999999999988754 34455667777776665544211122234556666666
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhcCCCCCc
Q 001392 265 PYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKPHEF 341 (1088)
Q Consensus 265 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~~~~ 341 (1088)
++. ...|..||.+|.+.|.+++|..+|+.++...-...+...++...+ .|++..-.+.- +..........
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhhh
Confidence 654 467888999999999999999999998865422222222222111 11111111100 10011111111
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCC-----CHHHHHH
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR-----DAQAFID 415 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~-~~p~-----~~~~~~~ 415 (1088)
...-..++..-........ -.=.-++..+|+++..|.....++ .|+..+-+..|..++. .+|. -...|..
T Consensus 317 ~dl~~~~a~~e~lm~rr~~--~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPL--LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhHHHHHHHHHHHHhccch--HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 1111112211111111110 011223566888888888776654 5788888999988875 3554 3578999
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001392 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 494 (1088)
Q Consensus 416 la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 494 (1088)
+|.+| ..|+.+.|...|+++....-.. ...-..+|...|..-....+++.|+.+.+.+...+....
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------------ 459 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------------ 459 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------------
Confidence 99999 9999999999999998752111 111257888889899999999999999999987432110
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 001392 495 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 574 (1088)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 574 (1088)
+.+|+....... .--....+|..++.+....|-++.....|.+++.+---.+....+.|..+....-
T Consensus 460 ----------~~~yd~~~pvQ~---rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 460 ----------LEYYDNSEPVQA---RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKY 526 (835)
T ss_pred ----------hhhhcCCCcHHH---HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHH
Confidence 011110000000 0012456777788888888888888888888888776677777888888888888
Q ss_pred hHHHHHHHHHHHHHC--CCChhHHHhhhhhhh---cccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcC
Q 001392 575 LQLSIELVNEALKVN--GKYPNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 649 (1088)
Q Consensus 575 ~~~A~~~l~~al~~~--p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~ 649 (1088)
++++.+.|++.+.+. |.-.++|..+-.-.. ..-..+.|..+|+++++..|....-.++ |. |...
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy-Ll---YA~l------- 595 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY-LL---YAKL------- 595 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH---HHHH-------
Confidence 888888888888876 444455554322222 2235788888888888877753332222 11 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC-CCCHHHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc
Q 001392 650 PKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727 (1088)
Q Consensus 650 ~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~ 727 (1088)
+.+-|-...|+.+|+++-..- +.....++++-+.-+ ..=-...-..+|+++++..|++ ......+..+..-...
T Consensus 596 -EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 596 -EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLETKL 671 (835)
T ss_pred -HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhhhh
Confidence 111277788888888876543 333333333322211 1112344567888888887744 3345566677777888
Q ss_pred cCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Q 001392 728 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765 (1088)
Q Consensus 728 g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~ 765 (1088)
|..+.|..+|.-+.+..+...++..|..--..-.+.|+
T Consensus 672 GEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 672 GEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 88888888888887765444445555544444455666
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=188.21 Aligned_cols=269 Identities=15% Similarity=0.071 Sum_probs=213.8
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 001392 157 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 222 (1088)
Q Consensus 157 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~ 222 (1088)
..|.+..+ ++..|...+.. +.+.+|+.+|++++..+|++ +.++..+|.|+..++ ++.+|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 34455442 34445444333 45789999999999999999 677888998877443 48899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001392 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1088)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1088)
+++++|+++.++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999775 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001392 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1088)
..+..++.++.+++..|++++|+..+.+++.. .+|..+.++..+|.++...|++++|...+.++....|....++..+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 44455666677788899999999999998863 2466777888999999999999999999999988888888899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 437 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~ 437 (1088)
+..|...|+ .|...++++++..-..+.....+..++ ..|+.+.+..+ +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 999888884 777777776654322222222266666 66777766655 55544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-12 Score=142.58 Aligned_cols=601 Identities=11% Similarity=0.119 Sum_probs=406.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHH--c------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLA--K------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~--~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
+-..+|+++++.-|.+...|+..-..-.. . .-|..--.+|++++-.-.+-+..|+.....+..+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 45678889999999999988765422221 1 235666677888877666778899999999999999999999
Q ss_pred HHHHHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 184 FYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 184 ~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
.|.++|..-|-. -..+|-.........|-.+-++..|++.|+++|....-+. ..+...++ +++|-+.+...+.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---e~L~~~d~---~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---EYLAKSDR---LDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---HHHHhccc---hHHHHHHHHHhcC
Confidence 999999988754 1233444445556678888999999999999998654332 33344455 7888888877765
Q ss_pred hC-------CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 263 IY-------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 263 ~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+ |.+...|..+..+..+.-+.-. +..++...+... .......|..||..|.+.|.+++|..+|.+++
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 43 5666778777777766554433 334444444322 12335678999999999999999999999999
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH--h--CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p 407 (1088)
...-...++..++-..+ .|++....+.--+. . ++. ...+-..++..-.-+.....- .-.-++..+|
T Consensus 276 ~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~ 346 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL--LNSVLLRQNP 346 (835)
T ss_pred HhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCC
Confidence 74433334333332222 12221111110011 0 111 112222222222211111111 1112456789
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001392 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1088)
Q Consensus 408 ~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~ 486 (1088)
++...|.....++ .|+..+-+..|..++... |......+..+|..+|.+|...|+.+.|..+|.++....-
T Consensus 347 ~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y------- 418 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY------- 418 (835)
T ss_pred ccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-------
Confidence 9999998777666 567788888888887654 3333333468899999999999999999999999987421
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHc--C--------
Q 001392 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY--Q-------- 556 (1088)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p-------- 556 (1088)
..-.+...+|...|..-....+++.|..+.+.+...- |
T Consensus 419 --------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 419 --------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 0112346788899999889999999999999887521 1
Q ss_pred --------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001392 557 --------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1088)
Q Consensus 557 --------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~ 628 (1088)
.....|..++.+....|-++.....|++++.+---.|....++|.++....-++++.+.|++.+.+.+-+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 124567777888888899999999999999999889999999999999999999999999999998776555
Q ss_pred HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC--HHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 629 ~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
+- +.+. |+...-... ...+.+.|..+|++++...|.. -..+...+..-.+-|....|+.+|+++....+
T Consensus 547 ~d---iW~t-YLtkfi~ry-----gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 547 YD---IWNT-YLTKFIKRY-----GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HH---HHHH-HHHHHHHHh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 42 2333 433311111 1156899999999999988742 12333445555567999999999999877553
Q ss_pred CCCCCCchhHHHHHHHHHHHcc----CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 707 GSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 707 ~~~~~~~~~~~~~la~~~~~~g----~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
+.-.+.+-++|...- -...-..+|++|++..|+..-.......+..-.+.|..+.|..+|.-.-++.|.
T Consensus 618 -------~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 618 -------EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred -------HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 333333434443321 123445789999988655444556667788888999999999999888887654
Q ss_pred Chh
Q 001392 783 NYT 785 (1088)
Q Consensus 783 ~~~ 785 (1088)
...
T Consensus 691 r~~ 693 (835)
T KOG2047|consen 691 RVT 693 (835)
T ss_pred cCC
Confidence 433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-15 Score=169.98 Aligned_cols=296 Identities=13% Similarity=0.064 Sum_probs=217.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
.+..|...+..|+|+.|.+.+.+.....+.....+...+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988887655433323344444666699999999999999999999988444455668999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH--------HHHHHHhcC
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 282 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~--------la~~~~~~g 282 (1088)
|+++.|...++++++.+|+++.++..++.+|...|+ +++|+..+.+..+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988 999999998888877665443221 111111222
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHH
Q 001392 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1088)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1088)
+.+...++.... +...+..+.+...++..+...|+.++|...+.++++ .++ ........+ .+..+++.+++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l~~--~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLLIP--RLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHHHh--hccCCChHHHH
Confidence 222222222222 222355677888888888888888888888888876 222 222222222 23448888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++.. +..++.++ ..|+.++|..+|++++...
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888888888888888887543 55788888 8888888888888877653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-15 Score=168.51 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.|+|..|.+.+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677999999999999998888899999999999999999999999999999885 56677899999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA----LAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
+.+++..|++ +.++..++.++...|+++.|...+.+.++..+.++..+.. ...-.+..+. ..++...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 6788999999999999999999999999876554443321 1111122222 455566777888
Q ss_pred HhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001392 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1088)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1088)
...| +++.++..++..+...|+++.|...++.+++..+.++.... ...........++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 58999999999999999999999999999986544332110 12233334456889999999999998 5
Q ss_pred CCCch--hhHhhHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
.|+++ .....+|.+++..|++++|..+|+ .+++..|+... +..+|.++.+.|+.++|..+|++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666 778899999999999999999999 57778887655 559999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-14 Score=152.50 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHH--------HHCCCChhHHHhhhhhhhcccchH
Q 001392 540 DTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEAL--------KVNGKYPNALSMLGDLELKNDDWV 610 (1088)
Q Consensus 540 ~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al--------~~~p~~~~~~~~l~~~~~~~g~~~ 610 (1088)
.+..|..++......+|.. ..+.+.++.+...+|++..|+..+...+ ... ..|.+-..+..+|.+.++..
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc
Confidence 5667777777777777765 5566667777777777777777776332 111 12223333333344444433
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCC
Q 001392 611 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (1088)
Q Consensus 611 ~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~ 690 (1088)
.|...+ ++|+.+|.....-.+.-...+...+..-...|+
T Consensus 435 ~a~~vl-----------------------------------------~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 435 SASAVL-----------------------------------------DSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred cHHHHH-----------------------------------------HHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 343433 444444444333333222333444555556688
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHH
Q 001392 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736 (1088)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~ 736 (1088)
-.+|...++++++.+| .+.+++..+...|... +.+.|+.+
T Consensus 474 ~~ea~s~leel~k~n~-----~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNP-----NDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred hHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHhc-CHHHHHHH
Confidence 8888888888888877 6678888887777664 56777765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-14 Score=152.66 Aligned_cols=459 Identities=14% Similarity=0.073 Sum_probs=300.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.++.|++|++..++++.+.|+++.++.....++.+.++|++|+...+.-....-.+ ...+..|.|.|+.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 36788899999999999999999999999999999999999995554433222222 22379999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
+ ..++.+ ..+....|..++++|+|++|..+|+..++.+.++.+.......+..... .... ..+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhccCCC
Confidence 8 344544 5567889999999999999999999999888777666554443322211 0111 334444455
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCC-------CchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 266 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGP-------TKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 266 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
. +...+++.|.++...|+|.+|+++++.++.. ...+. ....+...++.++..+|+..+|...|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 5678899999999999999999999999432 11111 113456778999999999999999999999
Q ss_pred HhcCCCC-CchhhHhhHHHHHHHcCCHH-HHHHHHHHHHHhCCC----------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 333 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYPD----------NCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 333 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
+..+.+. ....+..++..+-....-++ .++..++......++ -..++.+.+.+.+..+..+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8543222 22222333322221111111 122222222111111 12355566666666677777766666
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001392 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1088)
Q Consensus 401 k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~ 479 (1088)
..-...|............. ....+..+..++.......+. ....+...++.+.+..|++..|+..+...+. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--~ 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLE--S 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h
Confidence 55545554433333333333 333566676666655443222 1356888889999999999999999985552 1
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHH------
Q 001392 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------ 553 (1088)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------ 553 (1088)
|.+.+. .....+.+...+..++...++...|...+..++.
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111100 0112334444555566677776667766666664
Q ss_pred -HcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHH
Q 001392 554 -KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 554 -~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1088)
..+.....+..++..-.+.|+-++|...+++.++.+|++..++..+...|... +.+.|..+-.
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22233445555666677779999999999999999999999998888876654 4555555444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-13 Score=140.82 Aligned_cols=450 Identities=14% Similarity=0.132 Sum_probs=300.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHH
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~ 215 (1088)
-++...+|.-|+.+++..+..+... ...-..+|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3456678999999988887655433 3566788999999999999999999887743 3347788999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
|...-.+ .|+++-....+-.+..+.++ ++-+..|...+.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklnd----Ek~~~~fh~~Lq--------------------------------- 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLND----EKRILTFHSSLQ--------------------------------- 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCc----HHHHHHHHHHHh---------------------------------
Confidence 9887766 46666655555555566665 122222222211
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001392 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1088)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1088)
+..+-...++.+++..-.|.+|+.+|.+++. .+|.....-..++.+|.++.-|+-+.+.+.-.+...|++
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1113445566777777789999999999987 777777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~-~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 453 (1088)
+.+.+..+...++.=+-..|..-...+... +...+.+-..+-.-+ .-.+-+.|+..+-..++.. +++..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--------PEARlN 290 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--------PEARLN 290 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC--------hHhhhh
Confidence 999888888777664433344333333221 112222222221111 2233455666655555442 567778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHH
Q 001392 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (1088)
Q Consensus 454 l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (1088)
++..|.+.++..+|+.+.+. ..|..+.-+...|.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgv 324 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGV 324 (557)
T ss_pred heeeecccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHH
Confidence 88889999999999887754 34566666666777
Q ss_pred HHHhcCCHHHHHHHHHHH---HHHc------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 534 LLEQIHDTVAASVLYRLI---LFKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~---l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
++...|+-....+.++-+ +..- -+.+.....++.+++-..++++.+.+++..-...-++....++++++++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 777776644333333222 2111 1223345566666677777888888888877777778888888888888
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH-HHhhHHH
Q 001392 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY-AANGAGV 683 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~la~ 683 (1088)
..|++.+|.+.|-++....-.++..-...|+.+ |... +++.-|..+|-+. ..|...+ .+..++.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArC-yi~n------------kkP~lAW~~~lk~--~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARC-YIRN------------KKPQLAWDMMLKT--NTPSERFSLLQLIAN 469 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH-HHhc------------CCchHHHHHHHhc--CCchhHHHHHHHHHH
Confidence 888888888888766543322222223345556 7666 7777776666432 2233333 3455677
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcC
Q 001392 684 VLAEKGQFDVSKDLFTQVQEAASG 707 (1088)
Q Consensus 684 ~l~~~g~~~~A~~~~~~~~~~~p~ 707 (1088)
.....+.+=-|.+.|..+-..+|.
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccCCC
Confidence 777788888888888887777763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=169.60 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=192.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++ -..|+..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4567777777777777777777777777777777777777777666 6677777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKS----HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
.|.-..|...+..-+.......... .-.+...........+..-..+|..+....+ ....+.++..||.+|...|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcch
Confidence 7777777777777664321100000 0000000000011112333455555554322 1256778999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a 435 (1088)
+|++|+.||+.+|...|++...|+.||-.+....+..+|+..|.+++++.|..+.++++||..+ ..|.|.+|+.+|-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCCCC-----CHHHHHHHHHHHHHcCCHHHHHH
Q 001392 436 RTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQ 469 (1088)
Q Consensus 436 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~ 469 (1088)
+.+.++..... ...+|..|-.++...++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99987732211 13566666666777777664443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=165.06 Aligned_cols=297 Identities=14% Similarity=0.110 Sum_probs=234.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQ 243 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~ 243 (1088)
.+..|.+.+..|+|..|.+.+.+.....+. +...+...+.+..+.|+++.|..+|.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345566777899999999888776554333 34444555666699999999999999999999998644 4455899999
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH-----HHHHHHHHHHhc
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 318 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----~~~~la~~~~~~ 318 (1088)
.|+ ++.|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999876544332211 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1088)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1088)
.+.+....++..... ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..++.++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 333333333333322 34567888999999999999999999999999994 5566555555544 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 399 ~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
+++.++.+|+++..++.+|.++ ..+++.+|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987544 566778999999999999999999999874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-15 Score=161.91 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHhhcCC---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 108 EHFILATQYYNKASRIDM---H-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p---~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
...+.++..+++++...| . .+..|+.+|.+|...|++++|+..|.+++..+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455678888888886443 2 367799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
.|+++++++|++ ..+++.+|.+++..|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.++...
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422221 22233444 88888888776654
Q ss_pred C
Q 001392 264 Y 264 (1088)
Q Consensus 264 ~ 264 (1088)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=166.05 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=208.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
+..|..+++.|+..+|.-.|+.++. .+|..+.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 4578899999999999999999988 578899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHh-------hhhhhh
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM-------LGDLEL 604 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-------l~~~~~ 604 (1088)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|..++.+-+...|........ ...-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999998888754322211 000112
Q ss_pred cccchHHHHHHHHHhhhcCCC-CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHH
Q 001392 605 KNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~~~-~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 683 (1088)
....+..-.+.|-.+....|. .|+-....||-+ |... |.|++|+.+|+.+|+..|+|...|+.||.
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 222344455666666555443 577778889988 8888 99999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--------HHHHHH
Q 001392 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--------AQILLY 755 (1088)
Q Consensus 684 ~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--------~~~l~~ 755 (1088)
.++...+..+|+..|++++++.| ....+++|||.+++.+|-|.+|+++|-.+|..-..+.+ -.+|..
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 78899999999999999999999999999987544211 145666
Q ss_pred HHHHHHhhccHHHH
Q 001392 756 LARTHYEAEQWQDC 769 (1088)
Q Consensus 756 La~~~~~~g~~~~A 769 (1088)
|=.++...++.+-+
T Consensus 548 LR~als~~~~~D~l 561 (579)
T KOG1125|consen 548 LRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHcCCchHH
Confidence 55555555655533
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-15 Score=143.12 Aligned_cols=210 Identities=21% Similarity=0.201 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
..+++.+|.-|+..|++..|...++++|+.+|++..+|..++.+|...|. .+.|-+.|+++++++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45688899999999999999999999999999999999999999999988 889999999999999999988888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
.++..|.+++|...|++++..+ ..+..+.++.++|.|..+.|+++.|..+|++++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888888653 4455668888888888888888888888888887 66777778888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~ 413 (1088)
+|-.|..+++......+-....+.....+-...|+.+.+-.+=.++....|......
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 888888888888887777778888778888888888888888888778888776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-15 Score=160.72 Aligned_cols=149 Identities=11% Similarity=0.068 Sum_probs=121.5
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHH
Q 001392 141 KGEVEQASSAFKIVLEADR----DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1088)
.+..+.++..+.+++...| ..+.+++.+|.++...|++.+|+..|++++..+|++ +.+++.+|.++...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 3567888999999986443 336789999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1088)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1088)
+..|.++++++|++..++..+|.++...|+ +++|+..|.+++..+|+++..... ..+....+++.+|...+...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHH
Confidence 999999999999999999999999999998 999999999999999988732111 11222344455555555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-14 Score=158.12 Aligned_cols=256 Identities=23% Similarity=0.277 Sum_probs=196.2
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-
Q 001392 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI- 371 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 371 (1088)
....|....+...++..|..+|+|+.|+..+..+++... ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 344566666777788888888888888888888876421 12333334445888899999999999999988875
Q ss_pred -------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001392 372 -------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1088)
Q Consensus 372 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--------p~~~~~~~~la~l~-~~~~~~~A~~~~~~a 435 (1088)
+|....++.+|+.+|...|++.+|..++++++.+. |.-...+..++.++ ..+.+++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34445688889999999999999999998888763 33456677778888 899999999999999
Q ss_pred HHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001392 436 RTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1088)
Q Consensus 436 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1088)
+++..+.....+ +.++.++|.+|+..|++.+|..+|++++.+....
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~------------------------------- 400 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL------------------------------- 400 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc-------------------------------
Confidence 999885433322 6789999999999999999999999999852100
Q ss_pred cCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
.-...+.....+.++|..|.+.+.+.+|..+|..++.+ +|+....|.+|+.+|..+|+++.|+++...+
T Consensus 401 ----~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 401 ----LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred ----ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00023445678889999999999999999999887753 4555778889999999999999999988887
Q ss_pred HHH
Q 001392 586 LKV 588 (1088)
Q Consensus 586 l~~ 588 (1088)
+..
T Consensus 477 ~~~ 479 (508)
T KOG1840|consen 477 LNA 479 (508)
T ss_pred HHH
Confidence 754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=140.96 Aligned_cols=201 Identities=23% Similarity=0.197 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
.+.+.+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|..+.|-+.|++++.++|++ ..++.+.|..++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-GDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-cchhhhhhHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999998 888999999999
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 209 KLGQLGKARQAFQRALQL--DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
.+|++++|...|++++.. .|..+..+.++|.|.++.|+ .+.|..+|++++..+|+.+.+...++...+..|+|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ---FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999863 23456788999999999998 8999999999999999999888888888888888888
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1088)
|..+++...... +...+++....++-...|+-+.|-.+=.+....+|
T Consensus 192 Ar~~~~~~~~~~---~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRG---GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhcc---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 888888777544 34456666666677777777777666666655443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=155.04 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=230.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
+...|..|+..|+.|+...|.++..|..++..++..|+|++|....++.++++|..+......+.++...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999998888888888888888777776555
Q ss_pred HHHH---------------HhC---CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchH
Q 001392 186 KRAL---------------QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1088)
Q Consensus 186 ~~al---------------~~~---p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1088)
+..- ..+ |.+ ..+.+..+.|+..+|+++.|...--..+++++.+..+++..|.++....+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 4211 111 222 34567788999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001392 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1088)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1088)
.+.|+..|++++.++|.+..+-... ..+.....+..-|.-.+..|.|..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~-------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS-------------------------MMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh-------------------------hhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999876432110 1123336677788899999999999999
Q ss_pred HHHHHHhcCC-CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 328 YMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 328 ~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
|..++...|. ...++..|.+++.+...+|+..+|+..++.+++++|....++...|.|+..+++|+.|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999984332 123455688999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 001392 407 PR 408 (1088)
Q Consensus 407 p~ 408 (1088)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 54
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=155.12 Aligned_cols=255 Identities=25% Similarity=0.225 Sum_probs=210.7
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--
Q 001392 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 335 (1088)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 335 (1088)
..|.-..+...++..|...|+|+.|+.++..++... ...+........+|.+|..++++.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 356677778889999999999999999999988651 1234445566679999999999999999999998743
Q ss_pred ---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1088)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~ 404 (1088)
..+|..+.++.+|+.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567777889999999999999999999999998763 22345788899999999999999999999987
Q ss_pred hC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001392 405 ID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 472 (1088)
Q Consensus 405 ~~--------p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~ 472 (1088)
+. |.-+..+.+||.+| ..|++.+|..+|++++.+......... ...++++|..|.+.+.+.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 62 34477889999999 999999999999999999877644322 4678899999999999999999999
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 001392 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (1088)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (1088)
++..+.. . .-...|.....+.+|+.+|..+|+++.|+++...++
T Consensus 434 ~~~~i~~-~-----------------------------------~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMK-L-----------------------------------CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH-H-----------------------------------hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9987421 0 001457788899999999999999999999999888
Q ss_pred H
Q 001392 553 F 553 (1088)
Q Consensus 553 ~ 553 (1088)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=152.44 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
...+..++.+|...|... +|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 345555666665555444 666667776666666666666677777777777777777777776666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 666667777777777777777777766543 222 34456666666777777777777777766666666666666666
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1088)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666 666666666666666666655555555555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-14 Score=151.08 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+ +++|+..+.+++...|.++.++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455556666666666666666666666666655556666666666555 556666666666655555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
++...|++++|...+..++... ..+.....+..+|.++...|++++|...|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555444321 1122334555566666666666666666666665 33444455566666666666
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
++++|+.++++++...|.++..+..++.++...|+.+.|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666665555566666666666666666666655555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-12 Score=132.08 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 206 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~lg~~ 206 (1088)
-+..|.-++...+.++|+..|..+++.+|....+.+.+|.++.+.|..+.|+.+.+.++. .|+. ...+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 455788888899999999999999999999999999999999999999999999887765 5554 23456778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
|...|-++.|...|........--..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~---------------- 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV---------------- 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh----------------
Confidence 9999999999999988876555566778888888888877 888888888887777654321
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1088)
..+..|..++..+....+++.|+..+.++++ .+|..+.+-..+|.+....|+|..|++.++
T Consensus 178 ----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 178 ----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred ----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 1235677788888888899999999999998 678888889999999999999999999999
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 367 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 367 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
.+++.+|.. +.+...|..||.++|+..+....+.++.+..+.. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt--- 314 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT--- 314 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc---
Confidence 999999886 4788889999999999999999999999887654 4445556655 555566666666555544332
Q ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q 001392 445 EVPIEVLNNIGVIHFEK---GEFESAHQSFKDALG 476 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~---g~~~~A~~~l~~al~ 476 (1088)
...++.+....... |...+.+..+..++.
T Consensus 315 ---~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ---MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ---HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44444444444432 445666666766665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-15 Score=154.02 Aligned_cols=311 Identities=16% Similarity=0.142 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
-....+..+++..+|..|+..|..++...|++ ...|...+.++..+|+++.|....+..+.++|..+......+.++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 45566667777777777777777777777777 55677777777777777777777777777777777666666666666
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
.++ ..+|...++. . .++ ....
T Consensus 130 ~~~---~i~A~~~~~~--------~-------------------------------------~~~-----------~~an 150 (486)
T KOG0550|consen 130 LSD---LIEAEEKLKS--------K-------------------------------------QAY-----------KAAN 150 (486)
T ss_pred hHH---HHHHHHHhhh--------h-------------------------------------hhh-----------HHhh
Confidence 655 4444444330 0 000 1123
Q ss_pred HHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
|+..+++.+......|....+.+.-+.++...|++.+|+..--.++++++.+..+++..|.++...++.+.|+.+|.+++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 33333333332222344445566778999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh
Q 001392 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483 (1088)
Q Consensus 404 ~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~ 483 (1088)
.++|+...+-..... .. ....+..-|.-.++.|++..|.+.|..++.+.|.
T Consensus 231 ~ldpdh~~sk~~~~~----------------~k----------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--- 281 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMM----------------PK----------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--- 281 (486)
T ss_pred ccChhhhhHHhHhhh----------------HH----------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc---
Confidence 999987544321111 11 1345566788899999999999999999986441
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHH
Q 001392 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563 (1088)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 563 (1088)
....++..|.+.+.+...+|+..+|+.-...++.++|.++.++.
T Consensus 282 ------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 282 ------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred ------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 22346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
+.|.++..+++|++|++.|+++++...+ ......+.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 9999999999999999999999998766 44444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-13 Score=135.31 Aligned_cols=285 Identities=18% Similarity=0.146 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1088)
.++|+..|..+++.+|....+...||++|...|..+.|+.+...++..++.. .....+...+|.-|...|-++.|..+|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444444444444444444444444445555555555555544444332221 123456788899999999999999999
Q ss_pred HHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
...+. .+.....+.-.|..+|....++++|+...++..++.+.. ...+..|+..+....+.+.|+..+.+++
T Consensus 131 ~~L~d---e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 131 NQLVD---EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHhc---chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 88875 344455677888899999999999999999998887654 4577788888888899999999999999
Q ss_pred HhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhh
Q 001392 404 KIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482 (1088)
Q Consensus 404 ~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~ 482 (1088)
+.+|++..+-+.+|.+. ..|++..|++.++.+++..+.. -++++..+..+|...|+..+....+..+....
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---- 279 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN---- 279 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 99999999999999999 9999999999999988875543 36788888999999999999999999888732
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHH
Q 001392 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (1088)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (1088)
..+.+...++..-....-.+.|..++.+-+..+|.-- ..
T Consensus 280 ----------------------------------------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf 318 (389)
T COG2956 280 ----------------------------------------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GF 318 (389)
T ss_pred ----------------------------------------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HH
Confidence 1344555566666666777888888888888899753 33
Q ss_pred HHHHHHHHH---cCChHHHHHHHHHHH
Q 001392 563 LRLAAIAKA---RNNLQLSIELVNEAL 586 (1088)
Q Consensus 563 ~~la~~~~~---~g~~~~A~~~l~~al 586 (1088)
+++...... -|...+.+..+..++
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHH
Confidence 444333322 233555555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-13 Score=150.98 Aligned_cols=317 Identities=16% Similarity=0.162 Sum_probs=196.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...++....++...|++++|+..+......-++....+-.+|.+++++|++++|...|..++..+|++ ...+.++..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 45667777788888888888888877777777777788888888888888888888888888888887 55566666666
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 208 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM-EKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 208 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al-~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.... ..+.-..+|.......|....+.. +...+. .|+ .+...+ .++...+.. .-|.++..+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3332 455556666666666665433321 111111 121 133222 233333322 2233333333333222
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHhhHHHHHHHcCCHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 360 (1088)
....-...++......... .|.+. ... .....+|. ...+++.+++.|...|++++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~-----------------~~~~~----~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLES-----------------NGSFS----NGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHHHHHHHHHHHHHHhhcc-----------------cCCCC----Ccc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 1111111111111110000 00000 000 00001111 23566888999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
|+.++++++...|..++.+...|.+|...|++.+|...++.+..+++.+-.+....+..+ +.|++++|...+....+..
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999988887777777777 8899998887766543321
Q ss_pred HhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 440 KKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 440 ~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
. +...+ .......|.+|.+.|++..|+..|..+...
T Consensus 293 ~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 V--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 11111 233345688999999999999999888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-13 Score=148.33 Aligned_cols=228 Identities=14% Similarity=-0.004 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYK 186 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~ 186 (1088)
+.|.+|..+|..++. ..+.+++|+..+.+++..+|.+..+|..++.++...| .+.+++..+.
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 345566666655544 3467889999999999999999999999999999998 6899999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
+++..+|++ ..+|...+.++..+|.. +.++.++.++++.+|.|..+|...+.++...|. +++++..+.++++.+
T Consensus 97 ~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d 172 (320)
T PLN02789 97 DVAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHC
Confidence 999999998 66788899888888874 678899999999999999999999999999888 999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1088)
|.+..+|+..+.++...+... . .....+.++.+..+++. ..|.+..+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~---------------------------~---~~~~~e~el~y~~~aI~---~~P~N~Sa 219 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLG---------------------------G---LEAMRDSELKYTIDAIL---ANPRNESP 219 (320)
T ss_pred CCchhHHHHHHHHHHhccccc---------------------------c---ccccHHHHHHHHHHHHH---hCCCCcCH
Confidence 999988888877654432100 0 00123456677777776 56777777
Q ss_pred HhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001392 345 YYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1088)
Q Consensus 345 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1088)
|+.++.++.. .+...+|+..+..++...|.++.++..|+.+|...
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888776 34556788888888888888888888888888753
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=149.64 Aligned_cols=240 Identities=12% Similarity=-0.048 Sum_probs=205.7
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
.+....++-.+-.++...+..++|+..+.+++..+|.+..+|...+.++..+| .+.+++.++.+++..+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34455566666677888899999999999999999999999999999999998 68999999999999999999999999
Q ss_pred hhhhhcccch--HHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 001392 600 GDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1088)
Q Consensus 600 ~~~~~~~g~~--~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 677 (1088)
++++.+.|.. ..++..+.+++...|. +..++...+.+ +... |.+++|++++.++++.+|.|..+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchhH
Confidence 9999888873 7889999999999887 78889889988 7777 89999999999999999999999
Q ss_pred HhhHHHHHHhc---CCc----hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhcC
Q 001392 678 ANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 678 ~~~la~~l~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~~ 746 (1088)
|+.++.++.+. |.+ +.++.+..+++...| ++..+|..++.++.. .++..+|+..+..++.. .
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~ 251 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--D 251 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--c
Confidence 99999998876 333 478888889999998 789999999999988 45677899999998875 6
Q ss_pred CCCHHHHHHHHHHHHhhc------------------cHHHHHHHHHHHHHhCC
Q 001392 747 NTDAQILLYLARTHYEAE------------------QWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g------------------~~~~A~~~l~~al~~~p 781 (1088)
+.++.++..|+.+|.... ...+|.+++..+-+.+|
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 777889999999998642 23557777766655555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-12 Score=146.16 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=157.2
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1088)
||+.+.++..+|..+...|+.+.|...+..+....|.+ ....+..+.+++..|++++|+..+++++..+|.+. .++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHH
Confidence 78889999999999999999999888888888777654 45677788889999999999999999999999884 333
Q ss_pred HHHHHHHHHcCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 201 LGIGLCRYKLGQL----GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 201 ~~lg~~~~~~g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
.. +..+..+|.+ ..+...+......+|....++..+|.++...|+ +.+|+..+++++..+|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 32 5555555444 344444443334566677777788888888888 889999999999999998888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
+++..|++++|+.++.+.+...+..+. ....+..++.++...|++++|+..|.+++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888865433222 234566788888888888888888888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-12 Score=145.90 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1088)
+....+..++.+|...|... .|...+.++.+..|.+ ....+..|.+++..|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567788888888877655 5566666666666644 456778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1088)
+|++..++.. +..++..|.+..+...+.+++ ...|.. ...+..+|.++...|++++|...++++++++|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999988775 666666655554444444444 334444 4556678999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001392 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAV 297 (1088)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1088)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+.+++.++..
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999999 9999999999999887543 34567999999999999999999998643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-12 Score=144.04 Aligned_cols=324 Identities=16% Similarity=0.144 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
.+++.....++...|++++|+.++..... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 35555667777788888888888876554 23446667
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHCCCC----------
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKY---------- 592 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~l~~al~~~p~~---------- 592 (1088)
+-..|.++..+|++++|...|..++..+|++...|..+..+..... +...-..+|.+.....|..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 7778888888888888888888888888888887777777763332 3455566676666666542
Q ss_pred ----------------------hhHHHhhhhhhhcccchHHHHHHHHHhhhc---C---C--------CCC--hHHHHHh
Q 001392 593 ----------------------PNALSMLGDLELKNDDWVKAKETFRAASDA---T---D--------GKD--SYATLSL 634 (1088)
Q Consensus 593 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~---~--------~~d--~~a~~~l 634 (1088)
|.++..+-.+|....+..-...++...+.. . + .+. .++++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 223333333333222222222222222211 0 0 011 2344555
Q ss_pred hhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001392 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (1088)
Q Consensus 635 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1088)
+.. |... |++++|+++++++|...|+.+..+...|.+|.+.|++.+|...++.++..++ .+-
T Consensus 201 Aqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DR 262 (517)
T PF12569_consen 201 AQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADR 262 (517)
T ss_pred HHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhH
Confidence 555 5555 9999999999999999999999999999999999999999999999999986 444
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC-CC------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--Chh
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS--NYT 785 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~-~~------~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~--~~~ 785 (1088)
.+-...+..+++.|++++|...+....+....+ .+ .......|.+|.+.|++..|++.|..+.+..-. +..
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555667888899999999999965543321111 11 223345799999999999999999998887653 334
Q ss_pred HHhHHHHHHHHHHHhhhhhcCCCHHHHHHH---HHHHHHHHHHHHHHhhCC
Q 001392 786 LRFDAGVAMQKFSASTLQKTRRTADEVRST---VAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 786 ~~~nla~~~~~~~~~~l~~~~~~~~~~~~a---~~~l~~A~~~f~~l~~~~ 833 (1088)
+-|+. +|+.++.-+.+-...+..+.+... +.-...|++++-.|.+.+
T Consensus 343 fDFH~-Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 343 FDFHS-YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred ccHHH-HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 44444 356777766555554444444443 445566778887776643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-12 Score=124.26 Aligned_cols=308 Identities=16% Similarity=0.151 Sum_probs=194.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~ 252 (1088)
.+-.+|..|+.++..-.+.+|.+ ...+..+|.||+...+|..|..+|++.-.+.|......+..+..+.+.+. +..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i---~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI---YAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc---cHH
Confidence 45555666666666666666655 33345566666666666666666666555555555544444544444444 444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
|+ .+...+.. .+.....+...-+-+.+..+++..+..+.++.-
T Consensus 97 AL----------------------------------rV~~~~~D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 97 AL----------------------------------RVAFLLLD---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HH----------------------------------HHHHHhcC---CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 44 44333321 111122334444555666677777766655432
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHH
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 411 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p-~~~~ 411 (1088)
..+......+.|.+.++.|+++.|++-|+.+++...-++-+-++++.++++.+++..|+.+...+++..- ++|.
T Consensus 140 -----~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 140 -----SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred -----CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 2355667888899999999999999999999998888888888999999999999999988887776431 1111
Q ss_pred HHHHHHHHH------hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001392 412 AFIDLGELL------ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485 (1088)
Q Consensus 412 ~~~~la~l~------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~ 485 (1088)
. .+|... ..|+. +.....+ -.+.++..+.++++.|+++.|.+.+..+--..
T Consensus 215 l--gIGm~tegiDvrsvgNt---~~lh~Sa-----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa------- 271 (459)
T KOG4340|consen 215 L--GIGMTTEGIDVRSVGNT---LVLHQSA-----------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA------- 271 (459)
T ss_pred c--CccceeccCchhcccch---HHHHHHH-----------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc-------
Confidence 1 111111 11111 1111111 14667777889999999999988775432210
Q ss_pred cccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHH
Q 001392 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 565 (1088)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 565 (1088)
....++.++.+++..-.. +++.....-+.-++.++|--.+++.++
T Consensus 272 ----------------------------------E~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 272 ----------------------------------EEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred ----------------------------------cccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCCCChHHHHHH
Confidence 223466788888776554 677778888888888999888899999
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 001392 566 AAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~ 584 (1088)
..+|++..-++.|..++-+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 9999998888877766543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-12 Score=125.53 Aligned_cols=423 Identities=16% Similarity=0.120 Sum_probs=275.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
+....+|..|++++......+|.+...+..+|.||+...+|..|..+|+++-.+.|.. ...++..+..+++.+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHHH
Confidence 4777899999999999999999999999999999999999999999999999999998 777888999999999999999
Q ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 218 QAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1088)
Q Consensus 218 ~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1088)
.+...+... |. ....+..-+.+....++ +..+...++ .-| +...+....|.+.++.|+++.|.+-|..+
T Consensus 99 rV~~~~~D~-~~L~~~~lqLqaAIkYse~D---l~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 99 RVAFLLLDN-PALHSRVLQLQAAIKYSEGD---LPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHhccccc---CcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 988776542 21 22333344455555555 444444433 334 46677888888888889999999888888
Q ss_pred HhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 295 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
++..+..| ...++++.++++.|++..|+++....+... ...|........-|.--...|+. +..-..
T Consensus 171 lqvsGyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~S------ 238 (459)
T KOG4340|consen 171 LQVSGYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQS------ 238 (459)
T ss_pred HhhcCCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHH------
Confidence 87765444 677888888888899998888888877632 12232211110000000011111 111111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001392 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1088)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1088)
.-.++++..+.++++.++++.|.+.+..+--.. .-+|..+.+++..-..+++.....-+.-.+.+ .+.|.+.+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-----nPfP~ETF 313 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-----NPFPPETF 313 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-----CCCChHHH
Confidence 124567777889999999999987765442211 12466777777666677777777666666655 23578999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
.++-.+|++..-|+.|...+-+--... ..- .....+++
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------yk~-L~~Yly~L 351 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------YKF-LTPYLYDL 351 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------HHH-hhHHHHHH
Confidence 999999999998888887775432210 000 11222222
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc
Q 001392 532 ARL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1088)
Q Consensus 532 a~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g 607 (1088)
-.. -...-..++|.+-+..+-....+.......-.......++ ...|++.|..++++. ..+....+++|+...
T Consensus 352 LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~ 428 (459)
T KOG4340|consen 352 LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLE 428 (459)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccc
Confidence 222 2233455555554444332111111100000111111111 233555566666553 456778899999999
Q ss_pred chHHHHHHHHHhhhcCCCCChHHH
Q 001392 608 DWVKAKETFRAASDATDGKDSYAT 631 (1088)
Q Consensus 608 ~~~~A~~~~~~al~~~~~~d~~a~ 631 (1088)
++..+.+.|+..+.....++.+-+
T Consensus 429 Dy~~vEk~Fr~SvefC~ehd~WkL 452 (459)
T KOG4340|consen 429 DYPMVEKIFRKSVEFCNDHDVWKL 452 (459)
T ss_pred ccHHHHHHHHHHHhhhcccceeee
Confidence 999999999999998887777643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-12 Score=136.26 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=132.5
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1088)
.++..+..++.+|..++..|++++|+..|+.++..+|.++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456788999999999999999999999999999999876 57899999999999999999999999999998733
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH
Q 001392 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1088)
Q Consensus 198 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1088)
.+++.+|.++... |++++|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 2578888888876 566677777777777777665544333222111000 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHH
Q 001392 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1088)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1088)
......+|..|...|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 011234455555566666666666666655444455555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
.++...|++++|+.+++.+....|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666555554443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-09 Score=125.35 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=154.4
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----
Q 001392 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---- 196 (1088)
...+|.+..+|..++..+...|++++|+..+...+..+|+.+.+++.+|.++++.+++.+|.-+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4557889999999999999999999999999999999999999999999999999998887776 6666555441
Q ss_pred --------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 197 --------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
..+++.+|.||-++|+.++|...|+++++.+|+|+.++..+|..+... + .++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 144566666666666666666666666666666666666666666655 4 6666666666654
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001392 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1088)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1088)
. |+..++|..+..+..+++... |.....+..+ .++..... .....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i----------------~~ki~~~~-~~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRI----------------ERKVLGHR-EFTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHH----------------HHHHHhhh-ccchhH
Confidence 4 334445555555555554322 2222222221 11111110 011122
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
..+.-+-..|...++|++++.++..+++.+|.+..+...++.||..
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2344455677788889999999999999999888888888888874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-12 Score=135.06 Aligned_cols=194 Identities=22% Similarity=0.330 Sum_probs=155.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 232 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 232 (1088)
++..+..++.+|..++..|+|+.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456688999999999999999999999999999999873 256799999999999999999999999999998776
Q ss_pred HHHHHHHHHHhhc-----hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 233 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 233 a~~~la~~~~~~~-----~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
+++.+|.++.... +.+.+.+|+..|++++..+|.+..+.. +
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----------------------------------a 154 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD----------------------------------A 154 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH----------------------------------H
Confidence 6888888887651 112388899999999988888764431 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1088)
+..++..... . ......+|.+++..|++.+|+..|..++...|+. +.+++.+|.
T Consensus 155 ~~~~~~~~~~--------------~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 155 KKRMDYLRNR--------------L---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHH--------------H---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 1111111110 0 1123468889999999999999999999997764 589999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
++...|++++|..+++.+....|+
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-13 Score=126.85 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.3
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+|+++++++|++ ++.+|.++...|++++|+..|..++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56789999999874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
.+ +.+++.+|.|+..+|++++|+..|.+++.+.|+++..+..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 788999999999999999999999999999999999998888766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-09 Score=114.57 Aligned_cols=295 Identities=18% Similarity=0.113 Sum_probs=172.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
-|..-+..|+|.+|.+...+.-+..+....+++.-|...-.+|+++.|-.++.++-+..+++...+.+..+.++...|++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 45555566777777777777666666666666666777777777777777777777765555455666677777777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHH---HH--HHHhcCCHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL---AN--HFFFTGQHFLVE 288 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l---a~--~~~~~g~~~~A~ 288 (1088)
..|......++...|.++.++.....+|...|+ +.....++.+.-+..--+..-...+ +. ++-..++-..+.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777776 6666655555544332111111000 00 011111111111
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 001392 289 QLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1088)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1088)
.+.......+..-...+.....++.-+...|++++|..+...+++..- + ...... .-....+++..-++..++.
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~---D-~~L~~~--~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW---D-PRLCRL--IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---C-hhHHHH--HhhcCCCCchHHHHHHHHH
Confidence 111111111111122345555666666677777777777777665311 1 111111 1123456666667777777
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
++..|+++..+..||.+|.+.+.|.+|..+|+.+++..| +...+..+|.++ ..|+...|...++.++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776655 345566677777 777777777777666643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=132.15 Aligned_cols=278 Identities=20% Similarity=0.200 Sum_probs=205.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhhHhhHHH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~ 350 (1088)
+.-+++.|++...+.+|+.+++.... ....+.+|..+|.+|+..++|.+|+++...-+. .+++....+.+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 44566677777777777777764322 233456788899999999999999988765432 23344445566778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 404 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~k~l~ 404 (1088)
++.-.|.|++|+.++.+-+.+.. ....+++++|.+|...|+ ++.|..+|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776532 235689999999987754 3455666665555
Q ss_pred hCCC------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 405 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 405 ~~p~------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+... ...++-+||..| ..|++..|+...+.-+.+....++... ..++.++|.+|.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4322 234666777777 889999999999888888777655432 46889999999999999999999999887
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC
Q 001392 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1088)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1088)
.... +......+...|.||..|.....+++|+.++.+-+.+..
T Consensus 264 LAie-------------------------------------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIE-------------------------------------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHH-------------------------------------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4210 012334667889999999999999999999988776433
Q ss_pred ------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 557 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 557 ------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
....+++.||..+...|...+|+.+....+.+.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 236788999999999999999998887776653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-09 Score=112.73 Aligned_cols=293 Identities=15% Similarity=0.110 Sum_probs=228.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhch
Q 001392 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANE 246 (1088)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~ 246 (1088)
-|..-+..|+|.+|.+...+.-+..+.. ...++.-+.+--++|+++.|-.++.++-+..++ ...+....+.+.+..|+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 3455667899999999999987766665 566777888999999999999999999998554 45667888999999999
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHH-----HHHHhcCCH
Q 001392 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA-----RSYHSKGDY 321 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la-----~~~~~~g~~ 321 (1088)
+..|...+.+++...|.++.++.....+|+..|++.....++.++.+..-.++....-+-..+ .-....+..
T Consensus 169 ---~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 ---YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred ---chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999998865433332222222221 111111222
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k 401 (1088)
+.=...++..-.. -...+.....++.-+..+|+.++|.+....+++..-+ +.....++ ....++...=++..++
T Consensus 246 ~gL~~~W~~~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHH
Confidence 2222233333221 1233455677888999999999999999999987533 33222222 3466889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 402 ~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
.++..|+++..+..||.++ ..+.|.+|..+|+.++...+. ...+..+|.++...|+...|.+.+++++.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s------~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS------ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999988876443 78899999999999999999999999985
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-11 Score=121.13 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 184 (1088)
+...+++..+.++++.+|+++..|+.+|.+|...|++++|+..|.+++..+|+++.++..+|.++ +..|+ +.+|..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777654 45565 4777777
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
++++++.+|++ ..+++.+|.++...|++++|+..|++++++.|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777776 55667777777777777777777777777766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=119.01 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=115.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
..+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46789999999875 5678999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
|+++.+++.+|.++...|+ +++|+..|.+++...|+++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999998887776653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=125.35 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhcCC
Q 001392 321 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 321 ~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~ 391 (1088)
++.|.++|..-++.. ++.-....++-+||..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 345556665544321 122233456888999999999999999888776665322 23588899999999999
Q ss_pred HHHHHHHHHHHHHhC----C--CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 001392 392 IEKAQELLRKAAKID----P--RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 463 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~----p--~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 463 (1088)
++.|+++|++.+.+. . ......+.||..| ...++.+|+.++.+-+.+....++.. ....++.+|..|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 999999999887542 2 2356778889988 88899999999999888776643322 26788899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 001392 464 FESAHQSFKDALGD 477 (1088)
Q Consensus 464 ~~~A~~~l~~al~~ 477 (1088)
.++|+.+....+..
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888874
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=142.83 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=178.0
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
..|.+..++..|+..+...+++++|+.++...+..+|+....|+.+|.++...+++..+..+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 67889999999999999999999999999999999999999999999999999887776555 44444333
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
..+| .+...+...+...+. ..++++.||.+ |-.+ |+.++|...|+++++.+|.|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3344 333344333333333 56789999999 9999 9999999999999999999999999
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC------------
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN------------ 747 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~------------ 747 (1088)
++|+.|... ++++|+.++.+++... +..++|..+..++++.+..-+..
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998853 33455666666666655542211
Q ss_pred ------CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHH
Q 001392 748 ------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1088)
Q Consensus 748 ------~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 795 (1088)
.-+.++.-|-..|...++|++++.+|+.++...|.|..+++.++.||.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 113333344477778899999999999999999999999999999975
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-10 Score=111.26 Aligned_cols=211 Identities=16% Similarity=0.060 Sum_probs=173.8
Q ss_pred HHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhh
Q 001392 51 FKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPST 130 (1088)
Q Consensus 51 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~ 130 (1088)
+...+.++.+++.+..+.-....-+ .++.-.++-.+..+.+..|... -|..+++++....|++..+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~---g~e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGAL---GDEIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRV 88 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhccc---CchHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhH
Confidence 3455666777766665432111000 1122233444444444455544 8999999988888999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
....|..+-..|++++|+.+|+..+..+|.|...+-....+...+|+-.+|++.+...+...+.+ ..+|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999998889999999999999999999999999 78899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
|+|++|.-+++.++-+.|.++..+..+|.+++..|-..++.-|..+|.++++++|.+..+++.+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999999999999999999999888888999999999999999988877765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-08 Score=114.60 Aligned_cols=403 Identities=15% Similarity=0.129 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
..|.+.|..+...|+.+.|+.+|..+.. |+.+..+.+-+|+.++|-.+.++ ..+..+.+.||..
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARM 976 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHH
Confidence 5666777777777777777777776654 44455555555555555444332 2344555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHh------CCCC--------------HHHHHHHHHHH-hcC-CHHHHHHHHHH---------
Q 001392 386 YVQLGQIEKAQELLRKAAKI------DPRD--------------AQAFIDLGELL-ISS-DTGAALDAFKT--------- 434 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~------~p~~--------------~~~~~~la~l~-~~~-~~~~A~~~~~~--------- 434 (1088)
|...|++.+|+..|.++-.. ...+ +.-....+..| ..| ....|+.+|.+
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 66666666665555544321 1000 01111112222 222 33333333322
Q ss_pred ---------HHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 435 ---------ARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 435 ---------a~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
++++. .+.....++.++..-+..+....+|++|..++-.+-....-. ..-..+.
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Al----------------qlC~~~n 1120 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGAL----------------QLCKNRN 1120 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------HHHhcCC
Confidence 22222 223344568899999999999999999998876654421100 0000111
Q ss_pred hhhhhhhccC---CC-CcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHH
Q 001392 505 MQLFHRFEND---GN-HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (1088)
Q Consensus 505 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 580 (1088)
....+.+.+. .. ..........++-.+|.++.++|.|..|.+-|.++-. .+.--..+.+.|+.++-+=
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGdt~KI~F 1192 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGDTQKIRF 1192 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCCcceEEE
Confidence 1111222111 11 1111122445788899999999999999988877532 1222344556666654321
Q ss_pred HHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHH
Q 001392 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (1088)
Q Consensus 581 ~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 660 (1088)
+.+ -....++| .++.-|++.-+|..--++++.++..+.+. .++-.|++. |-..++.+-. +-..|++|
T Consensus 1193 FAn-----~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tFYTKg--qafd~LanF-Y~~cAqiEie----e~q~ydKa 1259 (1416)
T KOG3617|consen 1193 FAN-----TSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETFYTKG--QAFDHLANF-YKSCAQIEIE----ELQTYDKA 1259 (1416)
T ss_pred Eee-----ccccceee-eehhhhhhhcccccChHHHhhhHhhhhcc--hhHHHHHHH-HHHHHHhhHH----HHhhhhHH
Confidence 111 01122233 33444455556665556666555544332 234446666 6555332210 11333333
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
...++.+. .++.+...-..+...+....+.. ....+.+..-.++. .+....|...+.+
T Consensus 1260 ~gAl~eA~--------------kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~~i~qc~~l 1317 (1416)
T KOG3617|consen 1260 MGALEEAA--------------KCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAADGIRQCTTL 1317 (1416)
T ss_pred hHHHHHHH--------------HHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHHHHHHHHHH
Confidence 33332221 11111111111112222222211 01112222222222 2556666666666
Q ss_pred HHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 741 LRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 741 l~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
+..- .-++ ..++..|...|....+|..|-+.+..+....|+-.
T Consensus 1318 leep-~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1318 LEEP-ILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred hhCc-CCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 6642 2222 66778888999999999999999999999999743
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-09 Score=139.45 Aligned_cols=387 Identities=13% Similarity=0.027 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALG 383 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la 383 (1088)
...+...+..+...|++..|+..+..+- ..+.........+..+...|.+..+..++..+-. ....++......+
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 3455566777788888888887665442 2222233344566677778888776666654311 1123344556777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 001392 384 HIYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453 (1088)
Q Consensus 384 ~~~~~~g~~~~A~~~~~k~l~~~p~---------~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 453 (1088)
.++...|++++|...+..+....+. .......++.++ ..|++..|...++.++...+..........+..
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 8888889999999999887654321 123334456666 889999999999988875332111011345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHH
Q 001392 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (1088)
Q Consensus 454 l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (1088)
+|.++...|+++.|...+.+++...... ........++.++|.
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~-------------------------------------g~~~~~~~~~~~la~ 539 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQH-------------------------------------DVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhh-------------------------------------cchHHHHHHHHHHHH
Confidence 8889999999999999999988632100 011113456678899
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC-----ChhHHHhhh
Q 001392 534 LLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLG 600 (1088)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~~l~ 600 (1088)
++...|++..|...+.+++.... .....+..++.++...|++++|...+.+++..... ...++..++
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 99999999999999998887421 12334567788888999999999999998876332 233556688
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCCh-HHH-HH---hhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDS-YAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~-~a~-~~---lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 675 (1088)
.++...|++..|...+..+......... ..+ .. +....+... |+.+.|..++.......+...
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHHHhcCCCCCccc
Confidence 8999999999999999988765332111 100 00 010102222 566667776655544222221
Q ss_pred H----HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 676 Y----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 676 ~----a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
. .+..++.++...|++.+|...+.+++........ .....++..+|.++..+|+..+|...+.+++..+
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1 1345666677777777777777777665422111 1223456666777777777777777777777665
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-09 Score=133.75 Aligned_cols=344 Identities=15% Similarity=0.110 Sum_probs=251.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--------hhHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--------PGAIRL 201 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--------~~~~~~ 201 (1088)
....+..+...|.+..+...+..+-. ....++......+.+++..|++.+|..++..+....+.. ...+..
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44456777788988887777655411 112344556778888899999999999999887653221 233455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC------CHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY------CAMA 270 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~------~~~~ 270 (1088)
.++.++...|+++.|...+++++...|... .++..+|.++...|+ +..|...+.+++..... ...+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 678889999999999999999998655432 345677888888888 99999999998875332 1245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCCchh
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIF 343 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~ 343 (1088)
+..++.+++..|++..|...+..++...... +.....+..+|.++...|++++|...+.+++..... ......
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 6778999999999999999999988653221 222345667899999999999999999998764321 122345
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEKAQELLRKAAKIDPRDA----QA 412 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~----~~ 412 (1088)
++..++.++...|++..|...+..+....+.. .... ......+...|+.+.|...+.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 56778999999999999999999997753321 1111 1123445567899999998877654332222 12
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 413 ~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
+..++.++ ..|++.+|...+.+++......+... ...++..+|.++...|+.++|...+.+++..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888 89999999999999998866654332 2467888999999999999999999999985
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-10 Score=109.58 Aligned_cols=209 Identities=18% Similarity=0.063 Sum_probs=172.2
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001392 423 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1088)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1088)
.+.++-++.....+...+.. -.+....++-.+..+....|..+.|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 34555555555555544443 1111234556667777888999999999988776
Q ss_pred hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001392 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1088)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1088)
..|.+..+.-..|..+...|++++|+++|..+++.+|.+..++-+...+...+|+.-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHH
Q 001392 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1088)
Q Consensus 582 l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1088)
+...+..++.+.++|..++.+|+..|++.+|.-+++.++-..|- .+..+..++.+.|... .. .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g-g~---------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG-GA---------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh-hH---------HHHHHHH
Confidence 99999999999999999999999999999999999999998887 5555678899844444 32 7889999
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHHH
Q 001392 662 ELYTRVIVQHTSNLYAANGAGVVL 685 (1088)
Q Consensus 662 ~~~~~al~~~p~~~~a~~~la~~l 685 (1088)
++|.++++++|.+..+++++-.+-
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999988888774443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-06 Score=101.68 Aligned_cols=239 Identities=14% Similarity=0.077 Sum_probs=146.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
.+..+++.+|+..+.++++..|+...+....|.++++.|++++|..+++..-...+++ ..+.-.+-.||..+|++++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHH
Confidence 3456788888888888888888888888888888888888888887776666666665 566677888888888888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001392 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1088)
.+|++++..+|+ ...++.+-..|.+.++ |.+-.+.--+..+..|+++..+.....+++..-.-
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~------------- 160 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS------------- 160 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC-------------
Confidence 888888888887 7777777777777766 54444444444556777776555444443322110
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH-HHH-hCCCc
Q 001392 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK-VLE-IYPDN 375 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~-~~p~~ 375 (1088)
.++.....+.. -|...+++.+..-+ .-....-....-.++...|.+++|...+.. ... ..+.+
T Consensus 161 --~~~~~~~i~l~------------LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~ 225 (932)
T KOG2053|consen 161 --ENELLDPILLA------------LAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN 225 (932)
T ss_pred --CcccccchhHH------------HHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc
Confidence 00111111111 12233333333110 011111122223445566777777777632 222 23334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
.......+..+...+++.+-.++..+++...+++
T Consensus 226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 226 LYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4444555666677777777777777777777776
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-11 Score=131.47 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1088)
.-..+|..+...|-...|+.|+++. .++.....||..+|... +|..+..+-+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~l 451 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQEL 451 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHh
Confidence 4567899999999999999888863 36677788899988665 7888888888
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
+ .|+++..|..+|.+....--|++|..+++.. +..|...+|...++.++|.++.+.++..+.++|-. ...|+
T Consensus 452 e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf 523 (777)
T KOG1128|consen 452 E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWF 523 (777)
T ss_pred c-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHH
Confidence 7 6778889999999888877788888888765 45577778888888999999999999999999998 77899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.|.++++++..|..+|.+++.++|++..+|.+++..|...++ -.+|...+..+++.+-.+..+|-+...+....
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 999999999999999999999999999999999999999999988 88999999999999888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhc
Q 001392 282 GQHFLVEQLTETALAVT 298 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~ 298 (1088)
|.+++|++.+.+++...
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 88888888888877554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=113.67 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=153.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
+...+-.....+|.+..+ +..+..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..+.++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555666778888888 8888899999998899988888888888888888888899999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|++ ..++..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++-.|+ +..|..++..+....+.+..+..
T Consensus 131 p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 131 PTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred CCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHH
Confidence 998 78889999999999999999999999999999999999999999998888 88899999888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
.++.+....|++..|..+...-+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccc
Confidence 88888888888888777665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-11 Score=112.47 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=109.7
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
..|.+++..+|.+....+.+|..++..|++++|...|+.++..+|.++.++..+|.+++..|++.+|+..|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
+ +.+++.+|.|+...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77889999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=117.16 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HHccC--HH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 731 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 731 (1088)
+..++++..+++++..+|+++.+|..+|.++...|+++.|+..|.+++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 8899999999985 67787 59
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 732 ~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
+|+.+++++++. ++.++.+++.||.+++..|++++|+.+|++++.+.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999998 7788999999999999999999999999999999987543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-10 Score=125.33 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...-..++.++...|-...|+..|++. ..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------------------------------------------------em 426 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------------------------------------------------EM 426 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------------------------------------------------HH
Confidence 355567889999999999999988754 45
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g 607 (1088)
|-....||...|+..+|..+..+-++ .|+.+..|..+|.+.....-+++|.++.+.. +..+...+|......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 66788899999999999999999888 6777888888888877776677777766653 3346677888888899
Q ss_pred chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh
Q 001392 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (1088)
Q Consensus 608 ~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~ 687 (1088)
++.++.+.|+..+.++|- ..-+|+.+|-+ +.+. +++..|...|..++..+|++..+|++++..|..
T Consensus 500 ~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred hHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 999999999999999887 67789999988 8888 999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 001392 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1088)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~ 762 (1088)
.|+-.+|...+.++++.+- .+..+|.|.-.+....|.+++|++.|.+.+..-....++.++..+......
T Consensus 566 ~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 9999999999999999874 678899999999999999999999999999875555677777766655444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=108.16 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
.+...+-.....+|.+..+ ..++..++..|+-+.++.+..++...+|.+ ..+...+|......|++..|+..|.++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3666666777889999999 999999999999999999999999989998 66777799999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCch
Q 001392 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305 (1088)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 305 (1088)
+.|++..+|..+|.+|.+.|+ ++.|-..|.+++++.|..+.+.++++..|+..|+++.|..++..+.... +...
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~ 202 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADS 202 (257)
T ss_pred cCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCch
Confidence 999999999999999999999 9999999999999999999999999999999999999999999988654 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMAS 331 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1088)
.+..+++.+....|++..|..+..+-
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhcccc
Confidence 88889999999999999998776543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=129.08 Aligned_cols=155 Identities=14% Similarity=0.004 Sum_probs=136.9
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
++..+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33334444556788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
|++ ...++.+|.++.++|++++|...|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...+
T Consensus 151 p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 151 SSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHH
Confidence 999 77889999999999999999999999999899999999999999999999 9999999999998876555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-10 Score=106.67 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=109.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
..|++++..+|++..+.+.+|.+++..|++.+|+..|++++..+|.+ +.++..+|.++...|++++|...|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999998 77899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
.++..++.+|.++...|+ +.+|+..|+++++.+|.+....
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchHH
Confidence 999999999999999998 9999999999999999887543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=114.91 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
.+-..|.-++..++|.+|+..|.++|.++|+|+..|..+|.+|.++|.|+.|++.++.++.++|.. ..+|..+|.+|+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 455568888888999999999999999999999999999999999999999999999999999988 7778899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
+|++.+|+..|+++|+++|++...+..|..+-...+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988777777666555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-10 Score=103.66 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=100.5
Q ss_pred HhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 120 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 120 a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
+..++ ++.-...+.+|..++..|++++|...|+.+...+|.++..|+++|.++-.+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 66778899999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+++..|.|+..+|+.+.|+..|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-06 Score=96.60 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=56.5
Q ss_pred cCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHH
Q 001392 622 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (1088)
Q Consensus 622 ~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~ 701 (1088)
+.+..|+..+..-++. |... .+|++|+.++-.+-... -|.-++...+..-..++-+.+
T Consensus 1074 Ld~~sDp~ll~RcadF-F~~~------------~qyekAV~lL~~ar~~~---------~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADF-FENN------------QQYEKAVNLLCLAREFS---------GALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred cCCCCCHHHHHHHHHH-HHhH------------HHHHHHHHHHHHHHHHH---------HHHHHHhcCCCchhHHHHHhc
Confidence 4566677766666776 7766 78888888765543311 122223333333222222222
Q ss_pred HHHh-cCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 702 QEAA-SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 702 ~~~~-p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
--.. ...+......++..+|.++.++|.|..|-+-|.++=.+
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 1000 00011123467889999999999999999888877443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.7e-06 Score=94.77 Aligned_cols=486 Identities=14% Similarity=0.047 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.++|.+|+....+.++..|+.+.+.+..|..+++.|++++|..+++..-...+++...+-.+-.+|...+++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46788999999999999999999999999999999999999988888877788888899999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
+++..+|+ ....+.+=.+|.+.+.|.+-.++--+..+..|+++..+.....+.+..-.. ...+
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~--~~~~------------- 164 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS--ENEL------------- 164 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC--Cccc-------------
Confidence 99999999 466788888999999988877777777778888776544444333332110 0000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
....+.. -|...++..+...+ .-....-....-.++..+|.+++|..++..-+... ..+.......
T Consensus 165 ~~~i~l~------------LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~ 230 (932)
T KOG2053|consen 165 LDPILLA------------LAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLEN 230 (932)
T ss_pred ccchhHH------------HHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHH
Confidence 0001111 12222222222211 00011111122234455666777777663332210 1122222223
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH----H---------HHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----L---------GHIYVQLGQIEKAQELLRKAAKID-PRDAQA 412 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----l---------a~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~ 412 (1088)
.....+...+++.+-.+...+++...+++..++.. + +..+...+..+..++...+.+... .+-.-+
T Consensus 231 ~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 231 KKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 34455566667777777777777666665111111 0 001111122333333333333321 111233
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcchhhhh
Q 001392 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKA-------GEEVPIEVLNNIGVIHF-EKGEFESAHQSFKDALGDGIWLTL 483 (1088)
Q Consensus 413 ~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~al~~~~~~~~ 483 (1088)
++.+-.-+ ..|+.++++..|-+-....+-. ....++.....+...+. ..+....+.+.+.+-+-.-.-...
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl 390 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRL 390 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHH
Confidence 44444444 5566666554443221110000 00001111111111111 111111122222111110000000
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCC---cCCCCcch---HHHHhHHHHHHhcCCH---HHHHHHHHHHHHH
Q 001392 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---VELPWNKV---TVLFNLARLLEQIHDT---VAASVLYRLILFK 554 (1088)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~la~~~~~~g~~---~~A~~~~~~~l~~ 554 (1088)
++.. .....+...+... +-...++.-...+.. .+..+.+. .+...+..++.+.++. -+|+-+++..+..
T Consensus 391 ~G~~-~~l~ad~i~a~~~-kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~ 468 (932)
T KOG2053|consen 391 LGLY-EKLPADSILAYVR-KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK 468 (932)
T ss_pred hhcc-ccCChHHHHHHHH-HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc
Confidence 0000 0000000000000 000001100011111 11111111 1223344556666654 5788899999999
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
+|.++.+...+..+|.-.|-+..|...|..+--.+-..-..-+.+-..+.-.|++.-+...+...+..+.+
T Consensus 469 s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 469 SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987643222111122223333445567888888888877776544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=117.71 Aligned_cols=237 Identities=12% Similarity=0.085 Sum_probs=172.1
Q ss_pred cchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC--CCChhHHHhhh
Q 001392 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 600 (1088)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~l~ 600 (1088)
......+.+.+++..+|++...+.-... ..+....+...++..+...++.+.++..+...+... +.++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4566778889999999998766544322 223334455555655544455666666665544332 23455667778
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.++...|++++|++.+.+. ...........+ |+.. ++++.|.+.++.+-+.+.+.+.+...
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi-~L~~------------~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQI-LLKM------------NRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH-HHHT------------T-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888999999999888753 133333334555 7777 89999999999999998888777777
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001392 681 AGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 758 (1088)
Q Consensus 681 la~~l~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~ 758 (1088)
-+++....| .+.+|.-+|+.+.+..+ .++.++..++.|++.+|+|++|...+++++.. ++.++.++.+++.
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~-----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv 243 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFG-----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHH
Confidence 777777766 69999999999877665 57888899999999999999999999999987 6777999999999
Q ss_pred HHHhhccH-HHHHHHHHHHHHhCCCChhHHh
Q 001392 759 THYEAEQW-QDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 759 ~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
+....|+. +.+.+++.++...+|+++.+.-
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99999998 5677888888889998876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-09 Score=124.02 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
++.-++-...-+.|.+..+..-|-+++.. ...|+ ....++..||.+...+|..+ +|..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~ 112 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDY--VRRYP----HTELFQVLVARALEAAHRSD-----------EGLAVWRGI 112 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHH--HHhcc----ccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHH
Confidence 34444445555566665555555544321 11122 33667888888888888777 999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001392 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1088)
+.+.|++..+++.++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~ 191 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGY 191 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988988 8889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
+.+|.++...|+.++|...|++++.....-...+
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 9999999999999999999999999876655543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-09 Score=111.30 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|....++++.|..++..|.++.|+..++.++...|++ +..+-..+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7788899999999999999999999999999999988 777888899999999999999999999999999988899999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1088)
.+++..|+ +.+|+..++..+..+|+++..|..|+..|...|+..++ ....+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a--------------------~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA--------------------LLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH--------------------HHHHHHHHHhC
Confidence 99999998 78999999999999999999999999999998886544 34456677888
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001392 319 GDYEKAGLYYMASVKEI 335 (1088)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1088)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-08 Score=102.94 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=129.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 200 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~ 200 (1088)
..+..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|..|+..|++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456778889999999999999999999999999988654 48889999999999999999999999988873 4556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+.+|.|+..++.- .+.....+++. ..+.....+|+..|+..+...|++..+-.
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~-------- 162 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTD-------- 162 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHH--------
Confidence 7777776544311 11111111110 01112244555666666666665542211
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
|...+..+. ...+.--+.+|+.|.+.|.|..|+.-++.++...+..+....+++.++.+|...|..++
T Consensus 163 ------A~~rl~~l~------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 163 ------ATKRLVFLK------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 111000000 00113334566677777777777777777777776667777777777777777777777
Q ss_pred HHHHHHHH
Q 001392 361 ALTNFEKV 368 (1088)
Q Consensus 361 A~~~~~~~ 368 (1088)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 76655443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=109.36 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
-+.++|.+|+..|++|+.++|.++..|..++.+|.+.|.|+.|++.++.++.++|....+|..+|.+|+.+|+|.+|+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHcCCHH
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1088)
|+++|.++|++ ..+.-.|..+-..++...
T Consensus 172 ykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 99999999999 565666665555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-08 Score=102.97 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 234 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 234 (1088)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4577788999999999999999999999999999883 22348899999999999999999999999999865 456
Q ss_pred HHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 001392 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1088)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~ 314 (1088)
+.+|.++...+. ..+......++.+. .......|+..++.++...+.++-..++...+..+
T Consensus 110 Y~~g~~~~~~~~--------~~~~~~~~~~~~~r-----------D~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 110 YMRGLTNMALDD--------SALQGFFGVDRSDR-----------DPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHhhhhcch--------hhhhhccCCCcccc-----------CHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 666766544432 11221111211110 01112456778888887765555444443333322
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhcCC
Q 001392 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQ 391 (1088)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~ 391 (1088)
... ...--+.+|..|.+.|.|..|+.-++.++...|+. .+++..++..|..+|.
T Consensus 171 ~~~-----------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 171 KDR-----------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHH-----------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 111 11224468899999999999999999999998875 5799999999999999
Q ss_pred HHHHHHHHHHH
Q 001392 392 IEKAQELLRKA 402 (1088)
Q Consensus 392 ~~~A~~~~~k~ 402 (1088)
.++|..+...+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99998877644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=114.51 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=134.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHH
Q 001392 136 QLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1088)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1088)
.-++..|+|..++..++ ....+| ........++++++.+|++...+.-+...- .|.. .+...++..+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l--~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL--QAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC--HHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH--HHHHHHHHHHhCccchH
Confidence 44566677777776555 222222 123455666677777777665554432211 2222 22233333333333444
Q ss_pred HHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 215 KARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1088)
Q Consensus 215 ~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1088)
.++..++..+.... .++...+..|.++...|+ +++|+..+.+. .+.........+++..++++.|.+.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55544444332211 233344445555655666 66666655532 345555556666666666666666666
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 293 TALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
.+.+.. .+..-+....+.+....| .+.+|..+|+.... ..+..+..+.+++.+++.+|+|++|...+..++.
T Consensus 156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 655432 221122222222333333 46777777777554 3344556666777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHH
Q 001392 371 IYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQA 412 (1088)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~k~l~~~p~~~~~ 412 (1088)
.+|+++.++.+++.+....|+. +.+.+++.++...+|.++..
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 7777777777777777777766 44556666666666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-08 Score=104.75 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=114.5
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|.. ...+++.+..++..|.++.|+..+...+...|+|+..+...+.+++..++ ..+|.+.+++++.++|..+....
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 555 55677788888888888888888888888888888888888888888777 77888888888888888877788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.+|..|+..|++.+|+.++...+.. .|.++..|..++.+|..+|+..+|... .+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHH
Confidence 8888888888888888777777743 366667788888888777776665433 34455
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001392 353 LKLGDFRSALTNFEKVLEIY 372 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1088)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 66777777777777777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-08 Score=101.79 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=120.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1088)
.+..++..|..++..|+|.+|+..|+.++...|.+ ..+.+.+|.+++..|+|..|+..|++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888888888888888888888888887765 46778888888888888888888888888888763 44566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.+++.+..- .+ ....+.....+|+..|+..+...|+++.+-.
T Consensus 84 ~~g~~~~~~~~~---------~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQIPG---------IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHHHH---------HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhCcc---------ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 667766554110 00 0011223366777777777777777653321
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
|...+..+. .....--+.+|..|...|.|..|+..|+.+++..+..+....++..++.+|..+|....|
T Consensus 129 -----A~~~l~~l~------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 129 -----AKKRLAELR------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -----HHHHHHHHH------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -----HHHHHHHHH------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111111111 011244556788888888888888888888887777777777788888888888887744
Q ss_pred H
Q 001392 362 L 362 (1088)
Q Consensus 362 ~ 362 (1088)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=115.61 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
+...|..++..|+|++|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ +.+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
|+++.|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777665444
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-07 Score=99.52 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-C----CHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-V----PIEVLNN 453 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~-~----~~~~~~~ 453 (1088)
......|.++.+...+..-.+.++....+.+.+.+..+..+ ..|++.+|.+.+...-- ....+.. . .-.++++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecC
Confidence 33344456666777777777777777778888888888888 89999999887754321 1111211 1 2356799
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHH
Q 001392 454 IGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 532 (1088)
Q Consensus 454 l~~~~~~~g~~~~A~~~l~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 532 (1088)
+|.++++.|.|.-+..+|.+++. .+.... .+ +.......-.......++|+.|
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~--~g------------------------~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLR--NG------------------------LKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHh--cc------------------------CCCCcceehhcccchhhHHhhh
Confidence 99999999999999999999996 211000 00 0000000002234668999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 001392 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571 (1088)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 571 (1088)
..|...|++-.|.+.|.++....-.++..|++++.++..
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-08 Score=99.14 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALV 235 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~ 235 (1088)
.+..++..|..++..|+|.+|+..|++++...|.+ .+.+.+.+|.+++..|++..|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999999876 466789999999999999999999999999999865 4567
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~ 315 (1088)
.+|.+++.... ..+ ......+...+|...|+.++...+.++-...+-..+..+-
T Consensus 84 ~~g~~~~~~~~-----~~~---------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL---------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHHHHHH-----HHH----------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----cch---------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 77776655422 111 0111223345688888888887766664444433332221
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCH
Q 001392 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQI 392 (1088)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~ 392 (1088)
.. ...--+.+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|..+|..
T Consensus 138 --------------~~---------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 138 --------------NR---------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp --------------HH---------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred --------------HH---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 11 122245689999999999999999999999999875 6889999999999998
Q ss_pred HHHH
Q 001392 393 EKAQ 396 (1088)
Q Consensus 393 ~~A~ 396 (1088)
+.|.
T Consensus 195 ~~a~ 198 (203)
T PF13525_consen 195 QAAD 198 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=94.97 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=95.5
Q ss_pred HhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 156 EAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 156 ~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+..|.+++.++|+++.++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 445 6677889999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
+.+|.+++..|+ ...|...|+.++...
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 999999999999 999999999988876
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-05 Score=82.14 Aligned_cols=436 Identities=12% Similarity=0.037 Sum_probs=253.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
++-++.+|.+..+|+.+..-+-.+ .+++....|++.+...|..+.+|...+...+..++|+.-..+|.++|..--+- .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 556788999999999998877766 99999999999999999999999999999999999999999999998754442 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHH----HHHHHHh---hCCCCHHHHHHHHHHHHhhc---h---HHhHHHHHHHHHHHHHhC
Q 001392 198 AIRLGIGLCRYKLGQLGKARQ----AFQRALQ---LDPENVEALVALAVMDLQAN---E---AAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~----~~~~al~---~~p~~~~a~~~la~~~~~~~---~---~~~~~~Al~~~~~al~~~ 264 (1088)
-..+.+-.+....|+...++. +|+-++. .++.....|...+..+..-. . ...++.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 222334444444455444333 3333333 34555555655554443221 1 112444455666665443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCCC
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHE 340 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~ 340 (1088)
-.+..-+. ++|..-+.-...+. ..-.+--....|..|...++....... ..|.
T Consensus 168 m~nlEkLW---------~DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 168 MHNLEKLW---------KDYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cccHHHHH---------HHHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 22221110 11111000000000 000111122234444444444432111 0000
Q ss_pred ----c-------hhhHhhHHHHHHHcC------C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC----------
Q 001392 341 ----F-------IFPYYGLGQVQLKLG------D--FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---------- 391 (1088)
Q Consensus 341 ----~-------~~~~~~la~~~~~~g------~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---------- 391 (1088)
. +..|.++...-...+ . -....-.|++++..-+-++++|+..+..+...++
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 0 011222221111111 0 1122335666666667777777766665555544
Q ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001392 392 ----IEKAQELLRKAAKID-PRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1088)
Q Consensus 392 ----~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (1088)
.+++..+|++++..- ..+...++.++..- ..- ..+.....+.+++.+.... +.-++.++...-.+..
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~----~tLv~~~~mn~irR~e 380 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID----LTLVYCQYMNFIRRAE 380 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC----CceehhHHHHHHHHhh
Confidence 677778888777543 23344444444433 222 2556666666666653321 2344555555556666
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHH
Q 001392 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542 (1088)
Q Consensus 463 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 542 (1088)
-...|..+|.++-+.. ..+..+-+...+.. |...++..
T Consensus 381 GlkaaR~iF~kaR~~~-----------------------------------------r~~hhVfVa~A~mE-y~cskD~~ 418 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDK-----------------------------------------RTRHHVFVAAALME-YYCSKDKE 418 (656)
T ss_pred hHHHHHHHHHHHhhcc-----------------------------------------CCcchhhHHHHHHH-HHhcCChh
Confidence 6778888888886632 11223333333333 44568889
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CC-CChhHHHhhhhhhhcccchHHHHHHHHHh
Q 001392 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG-KYPNALSMLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 543 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
-|..+|+..+..+++.+..-+.....+...|+-..+..+|++++.. .| ....+|..+...-..-|+....+++-++.
T Consensus 419 ~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 419 TAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999998888888888888889989999999998876 22 23357777777777788887777776665
Q ss_pred hhcCC
Q 001392 620 SDATD 624 (1088)
Q Consensus 620 l~~~~ 624 (1088)
....|
T Consensus 499 ~~af~ 503 (656)
T KOG1914|consen 499 FTAFP 503 (656)
T ss_pred HHhcc
Confidence 55444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=92.48 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~ 202 (1088)
+.+++.+|..++..|++++|+..|..++..+|++ +.+++.+|.+++..|++..|+..|+.++...|+.+ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999988876 56889999999999999999999999999988852 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
+|.++..+|++++|...|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00016 Score=78.26 Aligned_cols=424 Identities=13% Similarity=0.106 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC---CCC----
Q 001392 163 PALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRY-KLGQLGKARQAFQRALQLD---PEN---- 230 (1088)
Q Consensus 163 ~a~~~la~~~~~~g--~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~---- 230 (1088)
.+++++|..+...| +...++++++..+...|... +..++.+|.+++ ...+++.|...++++..+. |+.
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666666666666 66777777777766666552 233455555443 4567777777777776543 222
Q ss_pred HHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHH
Q 001392 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 310 (1088)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 310 (1088)
..+...|+.+|..... .+..+...+.+++++....|... -...+.
T Consensus 88 f~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p~ws---------------------------------ckllfQ 132 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVPYWS---------------------------------CKLLFQ 132 (629)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCchhh---------------------------------HHHHHH
Confidence 2334455555555442 25556666666666654443110 122333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHh--hHHHHHHHcC---CHHHHHHHHHHHHHhCCCcH-------H
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYY--GLGQVQLKLG---DFRSALTNFEKVLEIYPDNC-------E 377 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~--~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~-------~ 377 (1088)
++..+.-..++..|++.+.-..... .....+....+ ..+.++.... +...+...+..+.+....++ .
T Consensus 133 Laql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lkv 212 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKV 212 (629)
T ss_pred HHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 3334444444444444322111000 00000001111 1122222222 22333344444443322221 1
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHh----CC----------------------C-CHHHHHHHHHHH---hcCCHH
Q 001392 378 TLKALGHI-YVQLGQIEKAQELLRKAAKI----DP----------------------R-DAQAFIDLGELL---ISSDTG 426 (1088)
Q Consensus 378 ~~~~la~~-~~~~g~~~~A~~~~~k~l~~----~p----------------------~-~~~~~~~la~l~---~~~~~~ 426 (1088)
.+..+-.+ |...|+...+...++++-.. .+ + ...++..+..+. ..|-++
T Consensus 213 Fyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 213 FYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Confidence 22223322 34456666665555544221 11 1 112222222222 356678
Q ss_pred HHHHHHHHHHHHHHhcCCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhh
Q 001392 427 AALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497 (1088)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~ 497 (1088)
++.++-++++....+..... . ..++-++..+-.-.|++.+|++....+.+.+.+.+.
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~-------------- 358 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT-------------- 358 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc--------------
Confidence 88888888887765543322 1 244556777888889999999999888764321000
Q ss_pred hHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC-c--HHHHHHHHHHHHHcCC
Q 001392 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-Y--VDAYLRLAAIAKARNN 574 (1088)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~la~~~~~~g~ 574 (1088)
.+-.....+.+.+.+|......|.++.|...|..+.+.... + ..+-.++|.+|...|+
T Consensus 359 -------------------~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 359 -------------------PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred -------------------hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence 00011235567788888888899999999999999875432 2 4456778889999887
Q ss_pred hHHHHHHHHHHHHHCCCC----------hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH-----HHHHhhhHHH
Q 001392 575 LQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGNWNY 639 (1088)
Q Consensus 575 ~~~A~~~l~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~-----a~~~lg~~~y 639 (1088)
-+.-.+.++. ++|.+ ..+++..|.+.+.++++.+|...+.+.++.....|.. .++.||.+ +
T Consensus 420 ~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v-~ 495 (629)
T KOG2300|consen 420 AEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV-F 495 (629)
T ss_pred HHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH-H
Confidence 6554444443 55553 2267778888899999999999999999977554443 34456666 5
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
... |+..++.+..+-+++.
T Consensus 496 lsl------------gn~~es~nmvrpamql 514 (629)
T KOG2300|consen 496 LSL------------GNTVESRNMVRPAMQL 514 (629)
T ss_pred HHh------------cchHHHHhccchHHHH
Confidence 555 6666776666655554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-07 Score=90.38 Aligned_cols=133 Identities=26% Similarity=0.225 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
+|..+++.-|.+|-.+|-.. -|..-|.+++.+.|.-|.++..+|.-+...|+|+.|...|+.++.++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56777777777777777655 7888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH-HHHHhh
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF-QRALQL 226 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~ 226 (1088)
+-.+...+|..++--|+|.-|..-+.+..+.+|++|-. ...-.+-...-+..+|...+ +++...
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR--~LWLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR--SLWLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH--HHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999989988422 11112222333555565443 444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-05 Score=86.18 Aligned_cols=327 Identities=12% Similarity=0.110 Sum_probs=152.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVP 163 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~ 163 (1088)
..-+++|..|..+++. +...|.....|..++.+.+..|++--|.++|..+-. ...+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 3457899999887764 466787788899999999998888777777754311 1122234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
.|-.+|.+.+..++|.+|..+|-. .+... . .+ -.|..+.++++|+..-+-. -.|.........-..++.
T Consensus 533 fykvra~lail~kkfk~ae~ifle---qn~te--~---ai-gmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~d 601 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLE---QNATE--E---AI-GMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMD 601 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh---cccHH--H---HH-HHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 455555555556666666555522 11111 1 11 2344455555555433210 112111111111111111
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---------CCCchHHHHHHHHH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---------GPTKSHSYYNLARS 314 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~~~~la~~ 314 (1088)
.|. -.+|- ++...+... .....+|...|....|......-..+... .-...+.|-.-|.+
T Consensus 602 t~q---d~ka~-------elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdl 670 (1636)
T KOG3616|consen 602 TGQ---DEKAA-------ELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDL 670 (1636)
T ss_pred cCc---hhhhh-------hhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhH
Confidence 221 11111 111111111 11123444445444433322111100000 01112444455555
Q ss_pred HHhcCCHHHHHHHHHHHH------H--hcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001392 315 YHSKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1088)
Q Consensus 315 ~~~~g~~~~A~~~~~~al------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1088)
|....++++|+++|.+.- + .+.-+...+..-...|..+...|+++.|+..|-.+-. +..-....
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaa 742 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAA 742 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHH
Confidence 666666666666665431 1 0111112222233456666666777777666654421 11112223
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001392 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 387 ~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (1088)
.....+.+|+.++..+.... .....|-.++.-| ..|+++-|...|.++- .......+|-+.|++.
T Consensus 743 i~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccccHH
Confidence 33456666666666543322 1223344556666 6677776666665432 2233345566667777
Q ss_pred HHHHHHHHHH
Q 001392 466 SAHQSFKDAL 475 (1088)
Q Consensus 466 ~A~~~l~~al 475 (1088)
.|..+-.+..
T Consensus 809 da~kla~e~~ 818 (1636)
T KOG3616|consen 809 DAFKLAEECH 818 (1636)
T ss_pred HHHHHHHHhc
Confidence 7766665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-08 Score=109.23 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+...|..++..|+|..|+.+|.+++..+|++ ..+++.+|.++..+|++++|+..+.+++.++|.+..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
|+ +.+|+..|++++.++|.++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-07 Score=93.09 Aligned_cols=305 Identities=15% Similarity=0.104 Sum_probs=199.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHH
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQL 353 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~ 353 (1088)
-++...++++++....+.+...+........+-.+..+...+|.|++++.+--..+... .+......++.+++..+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554443332222233444455666777777777766544433311 122334556788888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-h
Q 001392 354 KLGDFRSALTNFEKVLEIYPD-----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-I 421 (1088)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~ 421 (1088)
..-++.+++.+....+..-.. ...+...++.++..++.++++++.|+++++...++ ..++..|+.++ .
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 888888888888777765322 23567778888888899999999999998764332 45778888999 8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001392 422 SSDTGAALDAFKTARTLLKKAGE-EVP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1088)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1088)
..|+++|+-+..++..+....+- ... ..+++.++..+...|..-.|.++.+++.+... ..
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal----~~----------- 239 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL----QH----------- 239 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH----Hh-----------
Confidence 99999999999999988877652 222 46778899999999999999999999887421 00
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHH
Q 001392 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK 570 (1088)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~ 570 (1088)
...+..+.....+|.+|...|+.+.|..-|+++...... .+.++...+.++.
T Consensus 240 ----------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 240 ----------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred ----------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 033446677888999999999999999999998864332 1344444444443
Q ss_pred HcCCh-----HHHHHHHHHHHHHCCCC------hhHHHhhhhhhhcccchHHHHHHHHH
Q 001392 571 ARNNL-----QLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRA 618 (1088)
Q Consensus 571 ~~g~~-----~~A~~~l~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1088)
...-. -.|+++-.+++++...- ...+..++.+|...|.-++-...+..
T Consensus 298 ~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 298 TLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 33222 33666666666654221 22556677777666665554444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00043 Score=76.18 Aligned_cols=396 Identities=12% Similarity=0.058 Sum_probs=224.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 152 ~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
++-++.+|.+..+|..+..-+-.+ -+++....|++.+...|.. +.+|.......+..++|+.-...|.++|..-- +.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s-~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS-PRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence 567788999999999999877666 9999999999999999999 67788889999999999999999999986432 34
Q ss_pred HHHHH-HHHHHHhhchH----HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cC------CHHHHHHHHHHHHhh
Q 001392 232 EALVA-LAVMDLQANEA----AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF---TG------QHFLVEQLTETALAV 297 (1088)
Q Consensus 232 ~a~~~-la~~~~~~~~~----~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g------~~~~A~~~~~~~l~~ 297 (1088)
+.|.. |..+-...+.. ....+|......-+..++.+...|...+..+-. .| +.+.....|.+++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 44433 22232223321 112233333333333556666666655544321 12 233345555555532
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh------
Q 001392 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------ 371 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------ 371 (1088)
+ . .++-.++..-..|++.+... ...-.+--....|..|...++....+
T Consensus 167 P----m-----~nlEkLW~DY~~fE~~IN~~-----------------tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r 220 (656)
T KOG1914|consen 167 P----M-----HNLEKLWKDYEAFEQEINII-----------------TARKFIGERSPEYMNARRVYQELQNLTRGLNR 220 (656)
T ss_pred c----c-----ccHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 1 00111111111112211111 00011111223344455544444332
Q ss_pred -CCC----c-------HHHHHHHHHHHHhcC------C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC------
Q 001392 372 -YPD----N-------CETLKALGHIYVQLG------Q--IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD------ 424 (1088)
Q Consensus 372 -~p~----~-------~~~~~~la~~~~~~g------~--~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~------ 424 (1088)
.|. . ...|.++...-...+ . .....-.|++++..-+-.+..|+..+..+ ..++
T Consensus 221 ~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~ 300 (656)
T KOG1914|consen 221 NAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKG 300 (656)
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhc
Confidence 111 0 123333333221111 1 12233456666666677777777666554 4444
Q ss_pred --------HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 425 --------TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---GEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 425 --------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
..++..+|++++...... ...+++.++..--.. ..++....++.+++..
T Consensus 301 d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~---------------- 360 (656)
T KOG1914|consen 301 DVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI---------------- 360 (656)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh----------------
Confidence 455566666665543321 112222222211111 1233444444444442
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHc
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI-AKAR 572 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~ 572 (1088)
...+-.-++..+...-.+..-...|..+|.++-+..-..-.++..-|.+ |...
T Consensus 361 --------------------------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 361 --------------------------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred --------------------------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 1111223455555555555667888999998876443333455554544 5567
Q ss_pred CChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 573 g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
++..-|...|+-.++..++.+..-..+...+...|+-..|..+|++++..
T Consensus 415 kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999886
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-06 Score=89.48 Aligned_cols=245 Identities=24% Similarity=0.253 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--CchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH--EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CE 377 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~ 377 (1088)
+++.++++.+...-++.+++.+-...+..-+..+ .-..+...++..+..++.++++++.|+.+++...++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 5677777777777777777777666554211111 122345567777778888888888888887763322 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDP----RD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE- 445 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~~p----~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~- 445 (1088)
++..||.++.+..++++|.-+..++..+.. ++ .-+++.++..+ ..|....|.++.+.+.++.-..++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 777788888888888888888888776532 22 34556677777 7888888888888888876655433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch
Q 001392 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
.....+..+|.+|...|+.+.|..-|+.+..... +. + ..-..+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~------~~---------------------------g----drmgqv 286 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA------SL---------------------------G----DRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh------hh---------------------------h----hhHHHH
Confidence 2256677789999999999999999988876310 00 0 111234
Q ss_pred HHHHhHHHHHHhcCCHHH-----HHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 526 TVLFNLARLLEQIHDTVA-----ASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~-----A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 587 (1088)
.++...|.++....-..+ |+++-++++++... ....+.+++.+|..+|.-++-...+..+-+
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 455555555554433333 77777777664332 245778899999988887776666655433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=90.34 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=133.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+|+.|.+.|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 45678889999999999999999999999999999999999999999999999999999999999999 78899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM-QRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~-~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+--|++.-|..-|.+-.+-+|+++---..|-....... ..+|...+ +++...+ .....|+..... .|+..
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d----P~~A~tnL~qR~~~~d-~e~WG~~iV~~y---LgkiS- 214 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD----PKQAKTNLKQRAEKSD-KEQWGWNIVEFY---LGKIS- 214 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC----HHHHHHHHHHHHHhcc-HhhhhHHHHHHH---Hhhcc-
Confidence 99999999999999999999998753322222222221 44554433 3443333 222222222111 12211
Q ss_pred HHHHHHHHHhhcCCCC----CchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 287 VEQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
...+++++......+. ...++++.+|..+...|+.++|...|+-++.
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1223333332221111 1235566666666666666666666666553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=97.70 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~ 186 (1088)
.+.-+.-++.-+..+|+++.-|..+|.+|+..|++..|...|.+++++.|+|+..+.++|.+++... .-.++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4455555666677777777777777777777777777777777777777777777777777666553 3456677777
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
+++..+|.+ ..+++.+|..++..|+|.+|...|+.++...|.+.
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777777777 55666677777777777777777777777666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=89.59 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=100.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
.+..+.+..-...+..|.-++..|++++|..+|.-..-.+|.|+..|+++|.++..+++|++|+..|..+..+.+++ +.
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~ 106 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YR 106 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CC
Confidence 34555666677889999999999999999999999999999999999999999999999999999999999999988 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
+.+..|.|+..+|+...|+..|..++. .|.+
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 789999999999999999999999998 4543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=92.65 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
+....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.+ ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4566778999999999999999999999999877653 4689999999999999999999999999999988 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
.+|.++...|+...+...+..++.. +.+|+.++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666665432 677888888888888876
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00036 Score=75.61 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHHHHHHHc------CCcHH--------HHHHHHHHHHHcCChHHHHHHHHHHHHHC---CC-------C
Q 001392 537 QIHDTVAASVLYRLILFKY------QDYVD--------AYLRLAAIAKARNNLQLSIELVNEALKVN---GK-------Y 592 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~------p~~~~--------~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~-------~ 592 (1088)
-.|-+++|.++-.+++... |.... .+-.++.+-.-.|++.+|+.-+..+.... |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4567788888777777532 11112 22334445556799999998887776653 43 2
Q ss_pred hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH--HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~--~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
+.+...+|......|.++.|...|..+.+.....|..+++ .++.. |+.. ++- ..+|+-.-.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~---ed~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDA---EDLYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccH---HHHHHHHHhc
Confidence 3466777887788889999999999999987776665443 44555 7665 332 2333333334
Q ss_pred CCCCH----------HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCchhHHHHHHHHHHHccCHHHHHHHHHH
Q 001392 671 HTSNL----------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (1088)
Q Consensus 671 ~p~~~----------~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~ 739 (1088)
.|.|. .+++..|.....++++.+|...+.+.++..... .+.-....+..||+++.-.|+..++.++..-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 45421 234555777778999999999999998865211 1112345677889999999999999999998
Q ss_pred HHHHhcCCCCHHHHH----HHHHHHHhhcc
Q 001392 740 CLRKFYYNTDAQILL----YLARTHYEAEQ 765 (1088)
Q Consensus 740 al~~~~~~~~~~~l~----~La~~~~~~g~ 765 (1088)
++......+|..+.. .+-..|...|.
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 888766677732222 23444555555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=86.18 Aligned_cols=109 Identities=28% Similarity=0.364 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1088)
.+++.+|..+...|++++|+..|..++...+..+....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5677788888888888888888888877544444445677788888888888888888888888877764 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~ 414 (1088)
|.++...|++++|+.++.+++...|++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888888888888888888888888765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.2e-06 Score=100.61 Aligned_cols=229 Identities=16% Similarity=0.208 Sum_probs=183.1
Q ss_pred EeCCCCCCChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001392 17 VALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYL 96 (1088)
Q Consensus 17 i~~~~lp~~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~ 96 (1088)
+|++.-|++++|+..++...|...-.|+.........+.++.|.++.++|+.. ++ | ....+++-+|..+-.+-...
T Consensus 1435 ~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN--~-REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1435 RDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-IN--F-REEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred cccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CC--c-chhHHHHHHHHHHHhHHHhh
Confidence 56677899999999999999999999999999999999999999999999865 21 1 11224454555444444444
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 97 g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
|..+ .-...|++|-+.. +-..++..+..+|...+++++|.++|+.+++...+....|..+|..+++..
T Consensus 1511 G~ee-----------sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1511 GTEE-----------SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred CcHH-----------HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 4322 3456666666543 234567888899999999999999999999988888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHH
Q 001392 177 RYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~ 255 (1088)
+-+.|..++.+++..-|.. -..+.-..+.+-++.|+.+.++.+|+-.+..+|.-.+.|..+...-...++ ......
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHH
Confidence 9999999999999998883 134445577888889999999999999999999999999888888888887 778888
Q ss_pred HHHHHHHhC
Q 001392 256 KMQRAFEIY 264 (1088)
Q Consensus 256 ~~~~al~~~ 264 (1088)
+|++++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 888887764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=80.69 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1088)
++.+|..+|.+++..|+|++|+..|.+++..+|+++.+++.+|.++...| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666665
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=83.55 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
+++.+|..++..|++++|+..|..++...|.+..++..+|.++...|++++|+..|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467778888888888888888888888888777788888888888888888888888888887777 4667778888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001392 210 LGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1088)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888777666
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.5e-06 Score=99.10 Aligned_cols=220 Identities=16% Similarity=0.196 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCH----HHHHHHHHHHHhhchHHhHHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENV----EALVALAVMDLQANEAAGIRK 252 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~----~a~~~la~~~~~~~~~~~~~~ 252 (1088)
-.+...-|.+.+..+|++ ...|+.+...+..+++.++|+..+++||.. ++.-. ..|..+-++....|. -+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHH
Confidence 344567788889999998 777888888889999999999999999974 44432 334444444444444 556
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
..+.|++|.+... ...++..|..+|...+.+..|.++++.++.... ....+|..+|..+.++.+-+.|..++.+|+
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6778888877653 345788899999999999999999999998764 455899999999999999999999999999
Q ss_pred HhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
+.+|. ..+.......|++-++.|+.+.+..+|+..+..+|.-.++|..+...-.+.|+...+..+|++++.+.
T Consensus 1592 ~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 87654 45677778889999999999999999999999999999999999999999999999999999998765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-07 Score=92.27 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~ 257 (1088)
.+.-+.-++.-+..+|++ ..-|..+|.+|..+|++..|...|.+++++.|+|++.+..+|.++....+.....++...|
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344445555666667776 5556667777777777777777777777777777777777776666655544556677777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001392 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1088)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 298 (1088)
.+++..+|.++.+++.||..++..|+|.+|...++.++...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-07 Score=96.91 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001392 132 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 196 (1088)
Q Consensus 132 ~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~ 196 (1088)
+.+|...+..+. ...|+.+|.+++ ..+|....++..+|.|++.. ....+|+.+..+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 667777776664 678899999999 88999999999999988765 23567888889999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
+.++..+|.+++..++++.|...|++++.++|+...+++..|.+....|+ .++|+..++++++++|....+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhHH
Confidence 77888899999999999999999999999999999999999999999988 999999999999999876543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=96.11 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
....|+.+|.+++ .++|..+.++..++.+++.. ....+|....++++..+|.|+.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999999988765 23578899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-H-HHHhhchHHhHHHHH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA-V-MDLQANEAAGIRKGM 254 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la-~-~~~~~~~~~~~~~Al 254 (1088)
+++.|+..|++++.++|+. +.+++..|......|+.+.|...++++++++|.-..+-...- . +|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 888999999999999999999999999999998665543322 2 444443 67777
Q ss_pred HHHHHHHH
Q 001392 255 EKMQRAFE 262 (1088)
Q Consensus 255 ~~~~~al~ 262 (1088)
..|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765433
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-05 Score=81.48 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 001392 109 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 172 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~--~---~p----------~~~~a~~~la~~~ 172 (1088)
.|+.-+.++...-.++..+..+++..+.+ |+..|...- ...++.... . .| .+...++..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 35566677766666666555555555544 455554322 222222211 1 11 2356788899999
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC--CCH---------
Q 001392 173 FNRGRYSDSLEFYKRALQVH----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DP--ENV--------- 231 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~----p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p--~~~--------- 231 (1088)
+....|..|+.........- ......+.+..-..+....+.++|+.++.-.-++ .| ++.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 99999999998877665432 1122333444455555666667776554322211 00 000
Q ss_pred ----------------HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 232 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 232 ----------------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
.+.......++...+ ..-+..-...+..+..+.+.++...+..++..|++.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122233333 5555555566666667888999999999999999999999876543
Q ss_pred h-hcCC---CCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------C---------CCCCchhhHhhHHHHHHH
Q 001392 296 A-VTNH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI------N---------KPHEFIFPYYGLGQVQLK 354 (1088)
Q Consensus 296 ~-~~~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~---------~~~~~~~~~~~la~~~~~ 354 (1088)
- .... .|. ....|.++|-++++.|.|.-+..+|.++++.. + .........++.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 1 1111 111 23456899999999999999999999998511 1 112344578999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001392 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1088)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1088)
.|++-.|.++|.++...+-.+|..|..++.|+...
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998743
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-07 Score=94.85 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=91.5
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH
Q 001392 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1088)
Q Consensus 128 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1088)
...++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|++++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36677778776 56789999999999999999987 5789999999999999999999999999888875 366788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
.+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 889999999999999999999999999877543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-08 Score=84.53 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~ 218 (1088)
+|+|+.|+..|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|+..+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 5566655 4555566777777777777777
Q ss_pred HHHHH
Q 001392 219 AFQRA 223 (1088)
Q Consensus 219 ~~~~a 223 (1088)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.8e-07 Score=89.44 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444454444444443 4566777777777788888888888877765542 3467777777777777777777777
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
+++...|.. ...+..+|.++..+|
T Consensus 97 ~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 777777776 455666677766443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-06 Score=85.00 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001392 112 LATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.+...+..++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.+++..|+|++|+..+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555566666666665 4455666666677777777777777766665443 345666666777777777777666
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+.+ . .+...+.++..+|.++...|++++|+..|+++
T Consensus 109 ~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 109 QQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred Hhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 542 1 11222445566667777777777777666665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-07 Score=96.23 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=96.4
Q ss_pred CHHHHhhHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HH
Q 001392 674 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 751 (1088)
Q Consensus 674 ~~~a~~~la~~l-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~ 751 (1088)
+...++..|..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++.+|+..|+.+++.||.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345566666655 5679999999999999999996542 3689999999999999999999999999999887665 88
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
+++.+|.++...|+++.|+.+|+++++.+|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-08 Score=78.95 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 228 (1088)
++.+|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777 666777777777777 57777777777777776
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-06 Score=82.84 Aligned_cols=190 Identities=19% Similarity=0.192 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1088)
.+..|+..|...+..|+|.+|+..|+.+....|.+ ..+.+.++.++++.++|+.|+..+++.+.+.|+++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988866 46889999999999999999999999999999873 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
..|.+++..= + ....+......|+..|+..+...|++.-+-.....+
T Consensus 113 lkgLs~~~~i---------------~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---- 159 (254)
T COG4105 113 LKGLSYFFQI---------------D--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---- 159 (254)
T ss_pred HHHHHHhccC---------------C--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----
Confidence 5555532210 0 001122335667777777777777765332211111
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
..+...+ +.--..+|+.|...|.+-.|+..++.+++..+..+....++..+..+|...|-.++|
T Consensus 160 -------~~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 160 -------VKLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred -------HHHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 1111111 122334555666666666666666666655444444455555555666666655555
Q ss_pred HHHH
Q 001392 362 LTNF 365 (1088)
Q Consensus 362 ~~~~ 365 (1088)
...-
T Consensus 224 ~~~~ 227 (254)
T COG4105 224 KKTA 227 (254)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.9e-06 Score=81.14 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=70.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhh
Q 001392 566 AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 645 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~ 645 (1088)
+.++...|++++|...... ..+.++...-..++.++.+.+-|...++++.+...+ .++..|+.. |...+..
T Consensus 115 a~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided---~tLtQLA~a-wv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED---ATLTQLAQA-WVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---HHHHHHHHH-HHHHhcc
Confidence 3445555555555554443 123334444444555555555555555555544321 233334444 4443222
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001392 646 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1088)
Q Consensus 646 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (1088)
. +.+..|.-+|+.+-...|..+...++.+.+...+|++++|..+++.++...+ .+|+++.|+..+-.
T Consensus 186 g--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 186 G--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLAL 252 (299)
T ss_pred c--------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHH
Confidence 1 3344455555555444444444555555555555555555555555554443 34445555544444
Q ss_pred HccCHHHHHHHHH
Q 001392 726 AQGNFALAMKMYQ 738 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~ 738 (1088)
..|...++..-+-
T Consensus 253 ~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 253 HLGKDAEVTERNL 265 (299)
T ss_pred HhCCChHHHHHHH
Confidence 4444444444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=84.83 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=96.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHcCCH
Q 001392 139 LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~ 213 (1088)
+..|++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. .+.+++.++.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36788888988999999999988 5678889999999999999999999999987654 345678899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
++|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999998663 3333455667778888888888 888888887763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-05 Score=80.32 Aligned_cols=234 Identities=11% Similarity=0.069 Sum_probs=163.3
Q ss_pred cchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HC-CCChhHHHhhh
Q 001392 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK-VN-GKYPNALSMLG 600 (1088)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~-~~-p~~~~~~~~l~ 600 (1088)
......+.+.+.|..+|.+..-+.-.... ......+...++.+...-++.+.-+.-+.+.+. .. ..+...+..-+
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 56778888899999999876554332211 112234444555555445555554444443332 22 23334556667
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhh
Q 001392 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (1088)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 680 (1088)
.+++..|++++|.........+ +..++ -..+ +..+ .+++-|....+++.+.+-+ ..+..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~l----E~~Al--~VqI-~lk~------------~r~d~A~~~lk~mq~ided--~tLtQ 174 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENL----EAAAL--NVQI-LLKM------------HRFDLAEKELKKMQQIDED--ATLTQ 174 (299)
T ss_pred HHhhcCCChHHHHHHHhccchH----HHHHH--HHHH-HHHH------------HHHHHHHHHHHHHHccchH--HHHHH
Confidence 7899999999999998863222 33332 2233 5555 8899999999999988754 34444
Q ss_pred HHHHHHh----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 681 AGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 681 la~~l~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
||..+.. .+.+..|.-+|+.+.+..| ..+.....++.|.+.+|+|++|..+++.+|.+ .+.++.++.++
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~-----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTP-----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccC-----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 5554443 3479999999999999775 57888999999999999999999999999998 67889999999
Q ss_pred HHHHHhhccHHHHH-HHHHHHHHhCCCChhHH
Q 001392 757 ARTHYEAEQWQDCK-KSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 757 a~~~~~~g~~~~A~-~~l~~al~~~p~~~~~~ 787 (1088)
..+-...|+..++. +.+.+....+|..+.+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 99999999887765 45677777788776543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=100.05 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=115.6
Q ss_pred CCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHH
Q 001392 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--------YSDSLEFYKRALQ 190 (1088)
Q Consensus 124 ~p~~~~~--~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--------~~~Al~~~~~al~ 190 (1088)
-|.++.+ ++.+|..++..+. +..|+.+|++++..+|++..++..++.++..... ...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3555544 4667888877665 8899999999999999999999998887766432 3455556666555
Q ss_pred h--CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 191 ~--~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
. .|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ .++|+..|.+++.++|..+
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788888888899999999999999999999 57899999999999999 9999999999999999988
Q ss_pred H
Q 001392 269 M 269 (1088)
Q Consensus 269 ~ 269 (1088)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-07 Score=92.33 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=99.7
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~L 756 (1088)
.+..|.-+...|+|..|...|...+..+|++.+ .+.++|.||.+++.+|+|..|...|..+++.+|.++. |..++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 677788888999999999999999999998764 5789999999999999999999999999999988777 8999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
|.+....|+.++|..+|+++++.+|+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999887643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-07 Score=95.54 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hhh-----hHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~-~~~-----~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~ 115 (1088)
..-..|..||+.|+|..|...+++++..-.... ++. ....++.++..|+.+|+++..+. .|+.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai~ 278 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAIE 278 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHHH
Confidence 455678899999999999999999754211000 000 11123334444444444443322 4555
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHh
Q 001392 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQV 191 (1088)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-l~~~~~al~~ 191 (1088)
.+++++..+|+|+.++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+.+. .++|.+++..
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555555555555555555555555555555555555555554444444444443333322 4444444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=77.05 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.+|..++..|++++|+.+|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777777777777777777777777777777777765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-05 Score=80.73 Aligned_cols=200 Identities=16% Similarity=0.198 Sum_probs=141.9
Q ss_pred cchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhH---H
Q 001392 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---L 596 (1088)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~ 596 (1088)
..+..+++-|......|++.+|+..|+.+...+|.. ..+.+.++.++.+.++++.|+..+++.+.+.|.++.+ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356778888888888888888888888888887764 5577777888888888888888888888888877763 3
Q ss_pred HhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 001392 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1088)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 676 (1088)
+..|.+ ++.......++ ......|+.-|+.++...|++.+
T Consensus 112 YlkgLs------------------------------------~~~~i~~~~rD----q~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLS------------------------------------YFFQIDDVTRD----QSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHH------------------------------------HhccCCccccC----HHHHHHHHHHHHHHHHHCCCCcc
Confidence 333333 11111111111 14566788889999999999877
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 755 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~ 755 (1088)
+-.....+ ..+... -..--..+|..|.+.|.+..|+.-++.+++.++..+. ...+..
T Consensus 152 a~dA~~~i--------------~~~~d~--------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKARI--------------VKLNDA--------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHHHH--------------HHHHHH--------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 65533222 222221 1223346789999999999999999999999877666 678999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 756 La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
+..+|+..|-.++|.++-.-+-.-.|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999887665555556555
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0028 Score=71.80 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=93.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1088)
.+..+...|+++.|+..|-.+. ....-..+......+.+|+.++..... .......|-.++..|.
T Consensus 712 wg~hl~~~~q~daainhfiea~-----------~~~kaieaai~akew~kai~ildniqd----qk~~s~yy~~iadhya 776 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN-----------CLIKAIEAAIGAKEWKKAISILDNIQD----QKTASGYYGEIADHYA 776 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh-----------hHHHHHHHHhhhhhhhhhHhHHHHhhh----hccccccchHHHHHhc
Confidence 3555666666666666554432 112222333445566666666655432 1111222444666677
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH-hcCCHHH----
Q 001392 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-AQAFIDLGELL-ISSDTGA---- 427 (1088)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~-~~~~~~la~l~-~~~~~~~---- 427 (1088)
..|+|+.|.++|.++-. ...-..+|-+.|++..|..+-.+.. .|.. ...|+..+.-+ ..|++.+
T Consensus 777 n~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 77777777776655421 1223345666677777666655543 2222 22333333333 4444433
Q ss_pred ---------HHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 428 ---------ALDAFKT------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 428 ---------A~~~~~~------a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
|+..|.+ ++++..+............+|.-+-..|+...|...|-++-.
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 3333332 233333332223346667778888888999999988877654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-08 Score=83.77 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
+++|+.|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ ...+|.++...+.+|.+++..|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35788999999999999995 466788899999999999999999999 788888889999999999999999999999
Q ss_pred HHHH
Q 001392 185 YKRA 188 (1088)
Q Consensus 185 ~~~a 188 (1088)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.6e-07 Score=88.17 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=79.9
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001392 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1088)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1088)
+.....++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+.++.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44556778888888888888888888888876433333345678888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCH--------------HHHHHHHHHHHHhCCCC
Q 001392 382 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 382 la~~~~~~g~~--------------~~A~~~~~k~l~~~p~~ 409 (1088)
+|.++...|+. .+|+.++.+++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888887763 44555555555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=95.02 Aligned_cols=203 Identities=17% Similarity=0.188 Sum_probs=132.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDP------RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIG 455 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p------~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~ 455 (1088)
|.+|...+++++|...|.++....- .....+...+.++...++..|+.+|++++.++...+.... ..++..+|
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455555555555555543210 1134455566677555888999999999988877654333 57888999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHH
Q 001392 456 VIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1088)
Q Consensus 456 ~~~~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (1088)
.+|... |+++.|+.+|++++....... .......++..+|.+
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-------------------------------------~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-------------------------------------SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------------------------ChhhHHHHHHHHHHH
Confidence 999998 999999999999988421000 011234677889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-----HHHhhhhh
Q 001392 535 LEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDL 602 (1088)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-----~~~~l~~~ 602 (1088)
+...|++++|+.+|+++....-+ ....++..+.+++..|++..|...+++....+|.... +...+..+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999874322 1245667788899999999999999999999886544 33333333
Q ss_pred hhcc--cchHHHHHHHHHhhhc
Q 001392 603 ELKN--DDWVKAKETFRAASDA 622 (1088)
Q Consensus 603 ~~~~--g~~~~A~~~~~~al~~ 622 (1088)
+-.. ..+..|+..|..+..+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS--
T ss_pred HHhCCHHHHHHHHHHHcccCcc
Confidence 3221 2367777777655444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-07 Score=95.20 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCC------------CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKP------------HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (1088)
.|..|++.|+|..|...|.+++..+... .....++++++.++.+++.|..|+..+.++|..+|+|+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3445555555555555555544432210 1123468899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHH
Q 001392 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS-DTGAALDAFKTARTLLK 440 (1088)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~-~~~~A~~~~~~a~~~~~ 440 (1088)
++..|.++..+|+++.|+..|++++++.|.|-.+...|..+- ... ......+.|..+.....
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999988887 333 33444666666665443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=78.83 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|++++|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46778888888888888888888888888877 56778888888888888888888888888888888888888888888
Q ss_pred hchHHhHHHHHHHHHHHHHhCC
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p 265 (1088)
.|+ +..|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 877 8888888888877665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0045 Score=72.93 Aligned_cols=537 Identities=11% Similarity=0.045 Sum_probs=262.0
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH---HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHH
Q 001392 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR---YERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1088)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A 113 (1088)
+.++.+-.++|.-|..+=-.+.-+++|+.--.-+.-.||-++. .+.+.+++....+-.+.|.+ .+.
T Consensus 675 rqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qi-----------kEv 743 (1666)
T KOG0985|consen 675 RQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQI-----------KEV 743 (1666)
T ss_pred HhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccH-----------HHH
Confidence 4678888899999999888888888888754443333332210 12233333333333344433 233
Q ss_pred HHHHHHHhhcCCCChh---------------------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------
Q 001392 114 TQYYNKASRIDMHEPS---------------------TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL------- 165 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~---------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------- 165 (1088)
..+++..--.+|.... -++.--..|+..++..+=++.|-+ +.+|...+..
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhhhhcC
Confidence 3333322222221111 111223345555666555555543 3355432211
Q ss_pred -----HHHHHHH---------------HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHH----------
Q 001392 166 -----LGQACVE---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK---------- 215 (1088)
Q Consensus 166 -----~~la~~~---------------~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~---------- 215 (1088)
+....+. -++++..--+.+++..+.....+ +.++..+|.+|...++-.+
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d-~a~hnAlaKIyIDSNNnPE~fLkeN~yYD 900 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQD-PATHNALAKIYIDSNNNPERFLKENPYYD 900 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcc-hHHHhhhhheeecCCCChHHhcccCCcch
Confidence 1111122 22334444555666666666666 6667777777665543221
Q ss_pred HHHHHHHHHhhCCCC--------------------HHHHHHHHHHHHhhchHHhHHHHH--------HHHHHHHHh---C
Q 001392 216 ARQAFQRALQLDPEN--------------------VEALVALAVMDLQANEAAGIRKGM--------EKMQRAFEI---Y 264 (1088)
Q Consensus 216 A~~~~~~al~~~p~~--------------------~~a~~~la~~~~~~~~~~~~~~Al--------~~~~~al~~---~ 264 (1088)
....=.-+-+.+|.- ...+..++.......+..-+.+.+ +.+.+.+.. .
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 111111111223321 112334455555554443344433 222333322 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1088)
..+|.....-...++..+-..+-+.++++.+-..............+... .-.-+......+..+.-.. +.|
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdny--Da~----- 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNY--DAP----- 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccC--Cch-----
Confidence 23555555666777777888888888888774322222221111111111 1112233333333332210 000
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEI----------------------YPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~ 402 (1088)
.+|.+....+-|++|...|.+.--. .-+.+.+|..+|.+..+.|...+|+..|-++
T Consensus 1053 --~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1053 --DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred --hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 1233444444444444444332000 0033455666666666666666666555443
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001392 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1088)
Q Consensus 403 l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~ 481 (1088)
+++..|.....+. ..|.|++-+.++..+.+.... +.+-..+..+|.+.++..+-...+
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E------~~id~eLi~AyAkt~rl~elE~fi---------- 1189 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE------PYIDSELIFAYAKTNRLTELEEFI---------- 1189 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC------ccchHHHHHHHHHhchHHHHHHHh----------
Confidence 4455555555555 556666655555555443322 111222333344444433322211
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH
Q 001392 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (1088)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (1088)
..| +..-.-..|.-+...|.|+.|.-+|.. +.-
T Consensus 1190 --------------------------------------~gp-N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN 1222 (1666)
T KOG0985|consen 1190 --------------------------------------AGP-NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSN 1222 (1666)
T ss_pred --------------------------------------cCC-CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhh
Confidence 122 223334566666677888888777754 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHH
Q 001392 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 641 (1088)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~ 641 (1088)
|..|+..+..+|+|..|.+..+++ ++..+|-..+......+.+.-|.-+=-.++-.. .-+-.+.+. |..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha-----deLeeli~~-Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA-----DELEELIEY-YQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEeh-----HhHHHHHHH-HHh
Confidence 778888888888888888877764 345566666666665555544433211111111 111223333 444
Q ss_pred HhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc
Q 001392 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1088)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~ 688 (1088)
. |.+++-+.+++.++.+...+.-.+..||++|.+-
T Consensus 1292 r------------GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1292 R------------GYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred c------------CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 4 7788888888877777766666777777777654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=101.27 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1088)
.+.+..|+.+|+++++++|+++.++..++.++.... ++..+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 456779999999999999999999999888876642 245566666666664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001392 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1088)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1088)
++++|...|++++.++|+ ...+..+|.++...|++++|+..|.+++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999994 5689999999999999999999999999999998753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0002 Score=75.60 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 109 HFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
.+..+...+..+....+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444443 244444455555555555555555555544 3444445555555555555555555555
Q ss_pred HHHHHHhCCCChhHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Q 001392 185 YKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+..++...+.. .......+. ++...|+++.|...|.+++..+|
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555544443 222222333 44555555555555555544333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00029 Score=74.34 Aligned_cols=226 Identities=30% Similarity=0.403 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 142 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
+.+..+...+..++...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+.+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 45555555555555555442 45555555555555555555555555554 23333 444555555555555555555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001392 218 QAFQRALQLDPENVEALVALAV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~-~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1088)
..+..++...+.+.......+. ++...++ +..|+..+.+++...|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~------------------------------ 162 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGD---YEEALELYEKALELDPE------------------------------ 162 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC------------------------------
Confidence 5555555554444333333333 3444444 44444444444433331
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001392 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1088)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1088)
.......+...+..+...+++..|+..+..++. ..+. ....+..++..+...+.+..|+..+..++...|..
T Consensus 163 ----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 163 ----LNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred ----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 012233444444446666777777777777765 2333 45566677777777777777777777777777765
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
...+..++..+...+.+..+...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666666666666666677777777777777766
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-08 Score=100.41 Aligned_cols=244 Identities=13% Similarity=0.046 Sum_probs=164.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
+-..|..|+.+|+|++|+.||.+.+..+|.|+..+..+|.+|++.+.|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999988777 66788889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
|...+|..-++.+|.+.|++.+....++.+..-.. + .-+.+.-|....+.. -
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E-------~----~I~~KsT~G~~~A~Q-----------------~ 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRE-------R----KIATKSTPGFTPARQ-----------------G 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHh-------h----hHHhhcCCCCCcccc-----------------c
Confidence 99999999999999999987765554443322110 0 000111111111100 0
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
..+.+ ..-.-|..+...|.++.++..|...+... ..+.....+ +..|.+.-+++.++.-+-+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000 01123555666777777777776655421 222222222 5667777788888888877777
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
..|.........+.+---.|...++...++.++.+.|.+-.....+..
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhh
Confidence 766655444444555555567778888888888888877555544443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=74.82 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=47.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46777777788888888888888777776 66777778888888888888877887777777664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-06 Score=84.13 Aligned_cols=109 Identities=19% Similarity=0.120 Sum_probs=84.0
Q ss_pred HHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC--
Q 001392 50 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE-- 127 (1088)
Q Consensus 50 y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~-- 127 (1088)
||-.+.+..+...|...+... .......++..+|.++...|..+ +|+..|.+++.+.|+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTT-------SGEKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccchhhhhHhccCC-------chhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchh
Confidence 334444555666665554321 12245667788888888777665 9999999999887653
Q ss_pred -hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001392 128 -PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1088)
Q Consensus 128 -~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1088)
+.++..+|.++...|++++|+..|.+++..+|.+..++..+|.++...|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999988333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-06 Score=77.65 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=73.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1088)
.+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.++.+++..++|..|+..+++.++++|.+ .+.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678889999999999999999999999888765 5788999999999999999999999999999987 356678
Q ss_pred HHHHHHHHcCC
Q 001392 202 GIGLCRYKLGQ 212 (1088)
Q Consensus 202 ~lg~~~~~~g~ 212 (1088)
.+|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=92.86 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
+++.|...|.++ |.+| ..+++.+|...|.++.....+.+.... ...+...+.++... ++.+|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 667777666664 6677 889999999999999988876544333 35566666666555 999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc-CCHHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (1088)
.+|++++....... ....-..++..+|.+|... |+++.|+.+
T Consensus 95 ~~~~~A~~~y~~~G-------------------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~ 137 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-------------------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEY 137 (282)
T ss_dssp HHHHHHHHHHHHCT--------------------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999987421000 1122467888999999999 999999999
Q ss_pred HHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh-------hHHHhhhhhhhcccchHHHHH
Q 001392 548 YRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 548 ~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~ 614 (1088)
|++++..... ...++..++.++...|+|++|+..|+++....-+++ ..+...+.+++..|++..|..
T Consensus 138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999985321 256888999999999999999999999887543221 244567778999999999999
Q ss_pred HHHHhhhcCCC
Q 001392 615 TFRAASDATDG 625 (1088)
Q Consensus 615 ~~~~al~~~~~ 625 (1088)
.|++.....|.
T Consensus 218 ~~~~~~~~~~~ 228 (282)
T PF14938_consen 218 ALERYCSQDPS 228 (282)
T ss_dssp HHHHHGTTSTT
T ss_pred HHHHHHhhCCC
Confidence 99999887664
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.011 Score=71.92 Aligned_cols=472 Identities=15% Similarity=0.099 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCCC---chHHHHHHHHHHHhcCCH
Q 001392 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSYHSKGDY 321 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~la~~~~~~g~~ 321 (1088)
+..|+.+++-+++..+- ...+.+.+|.+++ ...+++.|+..+++++.....+.. ...+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44556666655532221 2244555666655 566777777777777655433111 133455667777777776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh-Hhh-H-HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHhcCCH
Q 001392 322 EKAGLYYMASVKEINKPHEFIFP-YYG-L-GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~-~~~-l-a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1088)
. |...+.+.+......+..... .+. + ...+...+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 888888877754332222211 111 1 223333368888888888877654 23332 223334555566667
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------------
Q 001392 393 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 446 (1088)
Q Consensus 393 ~~A~~~~~k~l~~~----------p~~~~~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 446 (1088)
+.+++.+.++.... +....+|..+-.+. ..|++..+...++..-..+.......
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777777664321 12244444444433 66676666655555444433321110
Q ss_pred ------------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001392 447 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1088)
Q Consensus 447 ------------~------------~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1088)
+ .-++..-|......|..+.|.+++.+++..-....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~-------------------- 335 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK-------------------- 335 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------------------
Confidence 0 11222234455555666677777777776311000
Q ss_pred hhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
.......+...... ..-..++..+ ...+....+.+.+-.+++..|...+
T Consensus 336 ------------~~~~~~~~~sl~~~-------------~~~~~~~~~l------~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 336 ------------IKSPSAPSESLSEA-------------SERIQWLRYL------QCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred ------------ccCCCCCCcCHHHH-------------HHhHHHHHHH------HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 00000000000000 0000111110 0234455566667778887777777
Q ss_pred HHHHHHC---CC------ChhHHHhhhhhhhcccchHHHHHHHH--------HhhhcCCCCChHHHHHhhhHHHHHHhhh
Q 001392 583 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 645 (1088)
Q Consensus 583 ~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~~~~d~~a~~~lg~~~y~~~~~~ 645 (1088)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+ +..|. +.-....
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il-a~LNl-~~I~~~~ 462 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL-AALNL-AIILQYE 462 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH-HHHHH-HHHhHhh
Confidence 7666543 22 35577888888888888999998887 44444444444433 22333 2222111
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHhcCCC-CHHHHh-hHHHHHH--hcCCchHHHHHHHHHHHHh-cCCCCCC-chhHHHH
Q 001392 646 EKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAAN-GAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MPDVWIN 719 (1088)
Q Consensus 646 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~-~la~~l~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~~~~~~ 719 (1088)
..+... ..+....++..+......|+ +...++ .+..++. ..-...++...+...++.. ....... ...++..
T Consensus 463 ~~~~~~--~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 463 SSRDDS--ESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred cccchh--hhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 100000 00122222222222222222 112222 2222222 2223446777777766655 2111111 2334556
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHH-----HHHHHHHhhccHHHHHHHHHHHHH
Q 001392 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 778 (1088)
Q Consensus 720 la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~-----~La~~~~~~g~~~~A~~~l~~al~ 778 (1088)
+++.++ .|+..+.......+.......++ ..+|. .+...+...|+.++|.....+.-.
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777 78888877777777765444433 23332 345557778999998887766543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-06 Score=92.58 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=79.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHH
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1088)
.+...++++.|+.+|++..+.+|. +...+|.++...++..+|+.++.+++..+|.+ ..++...+..+...++++.|
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHH
Confidence 334456677777777776666653 44456666666677777777777777777766 55566667777777777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
+.+.++++...|++...|+.|+.+|...|+ ++.|+..++.+-
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCc
Confidence 777777777777777777777777777777 777776666443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.4e-06 Score=85.35 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1088)
.+..|.-++..|+|..|...|...++..+..+..+.++||||.+++.+|+|+.|..+|..+++..+..|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45555556666777777777777777766677777788888888888888888888888888777777777777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1088)
+...+|+.++|..+|+++++.+|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888887777665544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=80.53 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.++.....+..|.-++..|++++|..+|+-+...+|.+ +..++++|.|+..+++|++|+..|..+..++++++...+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 44456788999999999999999999999999999999 77789999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
|.+++..|+ ...|+..|..++. .|.+.
T Consensus 112 gqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 999999999 9999999998887 45544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0012 Score=69.86 Aligned_cols=263 Identities=18% Similarity=0.127 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+.+++.-++..+..|+++.|.+-|+-++..-..-...+.++-.-..+.|.++.|..+-..+-...|.. +......-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHH
Confidence 44455556666666777777777766653211111222222223344566666766666666666666 33444444455
Q ss_pred HHcCCHHHHHHHHHHHHhh---CCCCH---HHHHHHH--HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 208 YKLGQLGKARQAFQRALQL---DPENV---EALVALA--VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~---~p~~~---~a~~~la--~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
+..|+++.|++..+..... .++-. .+.+.-+ ...+. .+ ...|...-..++++.|+...+...-+..++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-ad---p~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-AD---PASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CC---hHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 5666777766666544332 12111 1111111 11111 11 445555555666666666555555555566
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHH
Q 001392 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1088)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1088)
..|+..++-.+++.+-+..+++ .++..|....--+.++.-++++.......+++..+.+..+...+.-|++.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6666655555555555432211 12222222222233333333333222233444444444555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001392 360 SALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 404 (1088)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~k~l~ 404 (1088)
.|..--+.+....|. ..++..|+.+-... |+-.++...+-++++
T Consensus 347 ~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555444444444442 22333333333322 444454444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0014 Score=69.32 Aligned_cols=293 Identities=16% Similarity=0.104 Sum_probs=176.2
Q ss_pred HHHHcCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHh
Q 001392 171 VEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1088)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~-~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1088)
+....|+-..|.+.-.+.-.+ ..+..+-+++.-+..-.-.|+++.|..-|+-++. +|..- +..|--+|+.....+.
T Consensus 93 iAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr~Ga 169 (531)
T COG3898 93 IAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHhccc
Confidence 333444555555554444422 2222344444445555555555555555555542 22211 1222222322222222
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc---hHHHHHHHHHHH-hcCCHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYH-SKGDYEKAG 325 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~la~~~~-~~g~~~~A~ 325 (1088)
.+.|..+-..+...-|.-+.++.......+..|+++.|+++.+......-..+.. ..+...-+.... ..-+...|.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 5556666666666666666665555556666666666666666554332222211 112222222221 223567777
Q ss_pred HHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 001392 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA-QELLRKAAK 404 (1088)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~k~l~ 404 (1088)
..-..+++ ..|+++.+-..-+..++..|+..++-.+++.+.+..|. +.++. ...+.+.|+.... ++-..++..
T Consensus 250 ~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCcHHHHHHHHHHHHh
Confidence 77777776 67888888889999999999999999999999998874 33322 2234455554322 233344556
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 001392 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDG 478 (1088)
Q Consensus 405 ~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~al~~~ 478 (1088)
+.|++....+..+..- ..|++..|...-+.+....|. ..++..++.+--.. |+-.++..++-+++...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 6899999999999877 899999998888877776554 46677778776655 99999999999999853
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0096 Score=67.45 Aligned_cols=185 Identities=9% Similarity=-0.046 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHH
Q 001392 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1088)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1088)
..|..........|+++...-.|++++--+ ......|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~c-------------------------------------------A~Y~efW 334 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPC-------------------------------------------ALYDEFW 334 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHH-------------------------------------------hhhHHHH
Confidence 455556666677888888888888877522 2356778
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILFK-YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g 607 (1088)
...++.....|+..-|...+..+.+. .|..+...+.-+.+....|++..|...++.....-|+...+-...+....+.|
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 88888888888888888777777664 46667777777777778888888888888888877888777777777777778
Q ss_pred chHHHHH---HHHHhhhcCCCCChHH--HHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHH
Q 001392 608 DWVKAKE---TFRAASDATDGKDSYA--TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (1088)
Q Consensus 608 ~~~~A~~---~~~~al~~~~~~d~~a--~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la 682 (1088)
+.+.+.. .+.............. ++......|... ++.+.|...+.+++...|.+-..+..+.
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 7777763 3332222111111111 111111112222 6777888888888888888777666665
Q ss_pred HHHHhc
Q 001392 683 VVLAEK 688 (1088)
Q Consensus 683 ~~l~~~ 688 (1088)
.+....
T Consensus 483 ~~~~~~ 488 (577)
T KOG1258|consen 483 RFELIQ 488 (577)
T ss_pred HHHHhC
Confidence 555443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.5e-06 Score=74.85 Aligned_cols=110 Identities=12% Similarity=0.195 Sum_probs=97.1
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~ 752 (1088)
.+..++.-|......|+|.+|++.|+.+....|.+.+ ...+.+.+|.+|++.|++.+|+..+++.++.+|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4567788888899999999999999999999997754 4689999999999999999999999999999888777 778
Q ss_pred HHHHHHHHHhhcc---------------HHHHHHHHHHHHHhCCCChh
Q 001392 753 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 753 l~~La~~~~~~g~---------------~~~A~~~l~~al~~~p~~~~ 785 (1088)
++..|.+++.... ...|+..|++.+...|++.-
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 9999999998876 78899999999999998754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0077 Score=65.39 Aligned_cols=439 Identities=14% Similarity=0.033 Sum_probs=225.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 105 EKEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
.|++++.+|..+|.+........+ .++-++..-.+-..+.+.-...+...-+..|..+...+-.|...++.+.|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 456778899999999977654443 344455555666778888888888877888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C----CCHHHHHHHHHH
Q 001392 180 DSLEFYKRALQVHPSC--------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD-P----ENVEALVALAVM 240 (1088)
Q Consensus 180 ~Al~~~~~al~~~p~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p----~~~~a~~~la~~ 240 (1088)
+|+..+......-... +-..-...+.|+..+|.+.+++..+.+.+..- | -+.+.+..+..+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 9999987665541111 01112346889999999999999999887642 2 244444443332
Q ss_pred HHhhchHHhHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHhcC-CHH---HHHHHHHHHHhhcCCCCCchHHHHH
Q 001392 241 DLQANEAAGIRKGMEKMQRAFE-----IYPYCA-MALNYLANHFFFTG-QHF---LVEQLTETALAVTNHGPTKSHSYYN 310 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~-----~~p~~~-~~~~~la~~~~~~g-~~~---~A~~~~~~~l~~~~~~~~~~~~~~~ 310 (1088)
+.+. +|-.+.+ +.|+.- .+.+.+-.++.... -|. -...++.......-..|.
T Consensus 177 lsrS-----------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~------- 238 (549)
T PF07079_consen 177 LSRS-----------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK------- 238 (549)
T ss_pred HhHH-----------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH-------
Confidence 2221 1111111 112111 11111111111100 011 011222221110000000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDNCETLKALGHI 385 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~ 385 (1088)
...--+-+++..+++.. ..|....+.-.+-.-... +.+++...++.+... ...-...+..+-..
T Consensus 239 -----e~l~~~mq~l~~We~~y----v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 239 -----ERLPPLMQILENWENFY----VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred -----hhccHHHHHHHHHHhhc----cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00111122222222211 223333322222222222 444444444443322 11112333344444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH------HHH--hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG------ELL--ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIG 455 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la------~l~--~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~l~ 455 (1088)
..+.++...|..++.-...++|......-.+. .+. ...++..-..++.-...+ ...+.. .-+..+...+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~-qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEI-QSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHH-HhhcccHHHHHHHHHHHH
Confidence 56778888898888888788887652221111 111 111122222222111111 111100 1134455567
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHH
Q 001392 456 VIHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1088)
Q Consensus 456 ~~~~~~g~-~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (1088)
.-++..|. -++|+.+++.++... +.+....+ ....
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-------------------------------------------~yD~ec~n-~v~~ 422 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-------------------------------------------NYDIECEN-IVFL 422 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-------------------------------------------cccHHHHH-HHHH
Confidence 77888887 788899998888732 11211111 0000
Q ss_pred HHhcCCHHHHHH--HHHHHH------H---HcC---CcHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 535 LEQIHDTVAASV--LYRLIL------F---KYQ---DYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 535 ~~~~g~~~~A~~--~~~~~l------~---~~p---~~~~~~~~la--~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
+.+ ..|..|+. .+.+.+ . +.| .+.+.-+.|+ ..+...|++.++.-+-.-..++.| ++.++..
T Consensus 423 fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RL 500 (549)
T PF07079_consen 423 FVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRL 500 (549)
T ss_pred HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 000 11111111 111111 1 112 1233334444 446788999999988888888999 7999999
Q ss_pred hhhhhhcccchHHHHHHHHHh
Q 001392 599 LGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~a 619 (1088)
+|.+++...+|.+|..+|..+
T Consensus 501 lGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 501 LGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999999998853
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.013 Score=66.32 Aligned_cols=394 Identities=14% Similarity=0.073 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQR 222 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~ 222 (1088)
.+.+...|..++...|-....|...|..-++.|....+.++|++++.--|-+ ..+|.. ++.+....|+.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3556666777777778777788888888888888888888888888877765 343432 34444455677777777777
Q ss_pred HHhhCCCCH---HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Q 001392 223 ALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT------GQHFLVEQLTET 293 (1088)
Q Consensus 223 al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~ 293 (1088)
|+.....+. ..|-.+......+++ +..-...|.+.++.--.....++..-.-+... -..+++..+-..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 777654422 233333333333333 55666666666654221111111110000010 011111111111
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhH-------hhHHHHHHHcCCHHHHHHHH
Q 001392 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPY-------YGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~-------~~la~~~~~~g~~~~A~~~~ 365 (1088)
.... ......+... +.....+..... .+...... ...-.++.........+-.|
T Consensus 217 ~~~~---------------~~~~~~~~~~---e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 217 VAER---------------SKITHSQEPL---EELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred HHhh---------------hhcccccChh---HHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 0000 0000000011 111111110000 00000000 01112222333344444455
Q ss_pred HHHHHh-----CC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 366 EKVLEI-----YP---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 366 ~~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
+..++. .| .....|......-...|+++...-.|++++--.......|+..+... ..|+..-|-..+..+.
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 555442 12 22345666666666778888888888888776667777787777777 6677777777666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCC
Q 001392 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (1088)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1088)
++.... .+.+...-+.+.-..|++..|...|+.....
T Consensus 359 ~i~~k~----~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------------------------------------- 395 (577)
T KOG1258|consen 359 KIHVKK----TPIIHLLEARFEESNGNFDDAKVILQRIESE--------------------------------------- 395 (577)
T ss_pred hhcCCC----CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---------------------------------------
Confidence 654332 2455555566666677777777777777663
Q ss_pred CcCCCCcchHHHHhHHHHHHhcCCHHHHHH---HHHHHHH--HcCCc-HHHHHHHHHH-HHHcCChHHHHHHHHHHHHHC
Q 001392 517 HVELPWNKVTVLFNLARLLEQIHDTVAASV---LYRLILF--KYQDY-VDAYLRLAAI-AKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~l~--~~p~~-~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~ 589 (1088)
. |....+-...+......|+.+.+.. ++..... .++.- ...+...+.. +.-.++.+.|...+.+++...
T Consensus 396 ---~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 396 ---Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred ---C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 2 4455555555556666677666663 3332222 11111 2223333333 344567777777777777777
Q ss_pred CCChhHHHhhhhhhhcc
Q 001392 590 GKYPNALSMLGDLELKN 606 (1088)
Q Consensus 590 p~~~~~~~~l~~~~~~~ 606 (1088)
|.+...+..+..+....
T Consensus 472 ~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 472 PDCKVLYLELIRFELIQ 488 (577)
T ss_pred CccHHHHHHHHHHHHhC
Confidence 77777666666554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.011 Score=71.84 Aligned_cols=409 Identities=18% Similarity=0.130 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCchhhHhhHHHHHH-HcCCHHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHhcCCHH
Q 001392 322 EKAGLYYMASVKEINKP-HEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYP--DNC----ETLKALGHIYVQLGQIE 393 (1088)
Q Consensus 322 ~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~ 393 (1088)
..|+..++.+++..+.+ ...+.+++.+|.+++ ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45666666666422221 223445777887777 67788888888888876653 222 24456677777777666
Q ss_pred HHHHHHHHHHHhCCC----CHHHHHHHHH--HH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 001392 394 KAQELLRKAAKIDPR----DAQAFIDLGE--LL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 394 ~A~~~~~k~l~~~p~----~~~~~~~la~--l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 465 (1088)
|...+.+.+..... .....+.+.. +. ..+++..|+..++.........+.+.- ..+....+.++...+...
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888888876433 2222222222 22 336899999999888877553322111 223333466677778888
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHH--HHHhcCCHHH
Q 001392 466 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVA 543 (1088)
Q Consensus 466 ~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 543 (1088)
.+++.++.+........ .... ..+....++..+-. ++...|++..
T Consensus 197 d~~~~l~~~~~~~~~~q-------------------------------~~~~--~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQ-------------------------------LDPS--VHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred hHHHHHHHHHHHHhhcc-------------------------------cCCC--CCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888888865321000 0000 11223334444433 3455677666
Q ss_pred HHHHHHHH---HH---HcC---C---------------------c------------HHHHHHHHHHHHHcCChHHHHHH
Q 001392 544 ASVLYRLI---LF---KYQ---D---------------------Y------------VDAYLRLAAIAKARNNLQLSIEL 581 (1088)
Q Consensus 544 A~~~~~~~---l~---~~p---~---------------------~------------~~~~~~la~~~~~~g~~~~A~~~ 581 (1088)
+...++++ +. ..| . . .-+|..-+......+..+.|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 66554443 22 111 0 0 12334444556666777788888
Q ss_pred HHHHHHHCCC-------C-------------------hhHHHhhhhhhhcccchHHHHHHHHHhhhcCC---C-----CC
Q 001392 582 VNEALKVNGK-------Y-------------------PNALSMLGDLELKNDDWVKAKETFRAASDATD---G-----KD 627 (1088)
Q Consensus 582 l~~al~~~p~-------~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~-----~d 627 (1088)
+.++++.-.+ . ..+....+++.+-.++|..|...+..+..... . ..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 403 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY 403 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh
Confidence 8887764211 0 01344567777788999999999988776421 1 23
Q ss_pred hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH--------HHHhcCCC---CHHHHhhHHHHHHhcCCchH---
Q 001392 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTS---NLYAANGAGVVLAEKGQFDV--- 693 (1088)
Q Consensus 628 ~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~al~~~p~---~~~a~~~la~~l~~~g~~~~--- 693 (1088)
++.++..|-. +... |+.+.|...|. .+....+. .+.+..++.+++...+.-..
T Consensus 404 ~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 404 PLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 4555555555 5555 99999999998 55555555 34556677777776665443
Q ss_pred -HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH-------HccCHHHHHHHHHHHHHHh-cCCCC----HHHHHHHHHHH
Q 001392 694 -SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF-------AQGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTH 760 (1088)
Q Consensus 694 -A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~-------~~g~~~~Ai~~~~~al~~~-~~~~~----~~~l~~La~~~ 760 (1088)
+..++.++..... +.+..++..+++++ ..-...++...+..+++.+ ....+ ..++..++..+
T Consensus 471 ~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 471 ELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred HHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4455554433221 12222333332221 1223458888888888876 33333 34456677777
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC
Q 001392 761 YEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 761 ~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
+ .|+..+.......++++....
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhh
Confidence 7 788888777666677665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=70.91 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=26.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
..|++++|+..|++++..+|++..+++.+|.+++..|++++|...+.+++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444444444444444444444444444444444444444444444443
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.01 Score=64.06 Aligned_cols=424 Identities=12% Similarity=0.027 Sum_probs=225.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
-+..-++-+|++...|+.+..-+-.+|.+++-.+.|+++..-.|--+.+|......-+..++|..-..+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999988888777888777766677788998888999888765443
Q ss_pred hhHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch------HHhHHHHHHHHHHH
Q 001392 196 PGAIRLGIGLCRYKLG---------QLGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1088)
Q Consensus 196 ~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~Al~~~~~a 260 (1088)
++|...-..-.+.+ ..-+|.+..-.+.-.+|.....|...+.....-.. ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 23322211111111 11222222222333567766677666655443221 12244445556666
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----
Q 001392 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---- 336 (1088)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---- 336 (1088)
+..--.+..-+. .+|+.-+.-+.++-.. ...| ...--|-.|...|+.......
T Consensus 188 l~tP~~nleklW---------~dy~~fE~e~N~~Tar-----------Kfvg---e~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 188 LQTPMGNLEKLW---------KDYENFELELNKITAR-----------KFVG---ETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred HcCccccHHHHH---------HHHHHHHHHHHHHHHH-----------HHhc---ccCHHHHHHHHHHHHHHHHhccccc
Confidence 554322221110 1111111111111100 0000 000012233333333322110
Q ss_pred CCCCchh-----------hHhhHHHHHHHc-----CC-HHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 337 KPHEFIF-----------PYYGLGQVQLKL-----GD-FRS-ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1088)
Q Consensus 337 ~~~~~~~-----------~~~~la~~~~~~-----g~-~~~-A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1088)
.+|-+.. -|.++...-... |+ ... ---.+++++...|-.+++|+.....+...++-+.|+..
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 0010000 122222221111 11 111 22245666666677777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 001392 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDA 474 (1088)
Q Consensus 399 ~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~l~~a 474 (1088)
..+.+...|. ....++.+| ...+.+....+|+++...+... +..+..-.. .|+++...+++-+-
T Consensus 325 v~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 325 VERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHHHHHHH
Confidence 7766655554 556666677 5555555555566555433221 000000000 11221111111100
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH
Q 001392 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1088)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1088)
. ....-++..+...-.+..-.+.|..+|.++-+.
T Consensus 393 ~----------------------------------------------~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 393 I----------------------------------------------NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred H----------------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 0 011223333333333444467777777776654
Q ss_pred cCCcHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 555 YQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 555 ~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.--...+|..-|.+ +...|++..|...|+-.+...|+++.....+-.++...++-..|..+|+.++..
T Consensus 427 ~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 427 GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 32223444444444 557788999999999999999998887777778888889999999999877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-05 Score=72.18 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS---CPGAIRL 201 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~~ 201 (1088)
|.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|.++...|++++|+.++++++...|+ + ..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~ 79 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRV 79 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHH
Confidence 3567888888888899999999999888865443 568888888888889999999998888888777 4 55667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888888877664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=87.85 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=79.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhH
Q 001392 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1088)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1088)
++...++++.|+.+|+++...+|+. ...++.++...++..+|+..+.+++...|.+...+...+.+++..++ +
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~---~ 250 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK---Y 250 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---H
Confidence 3344566777777777776666542 34466666666777777777777777777776666677777777766 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
+.|+...+++....|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777777777777777777777776666543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.012 Score=63.94 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc--------CCchHHHHHHHHHHHHhcCCCCCCchhHHHHH--HHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK--------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINL--AHVY 724 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l--a~~~ 724 (1088)
+.-++|+.+++.+++..|.+...-+.. ..+.+. ..+..-+.+-.-+-+.+-.+....+...-.-| |..+
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v-~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIV-FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 447899999999999998887544322 211111 11222222222222222112222334444444 4667
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC----ChhHHhHHHHH
Q 001392 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS----NYTLRFDAGVA 793 (1088)
Q Consensus 725 ~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~nla~~ 793 (1088)
+.+|+|.++.-+-.-..+. .|.+.++..+|.+.+...+|.+|..++.. +-|+ |..+.-.+++|
T Consensus 473 ysqgey~kc~~ys~WL~~i---aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKI---APSPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HhcccHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 8899999998776655554 55899999999999999999999998864 3343 24455556666
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=70.27 Aligned_cols=65 Identities=34% Similarity=0.565 Sum_probs=36.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
+..|+|++|+..|++++..+|++ ..+++.+|.|+...|++++|...+.+++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555566666666666656655 455555666666666666666666666555555555544444
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=76.22 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
-.-|.-+|..|+|.+|..-|..+|...|..+ ..|...|.++++++.++.|+..+.+++.++|.+ ..+....+.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHH
Confidence 3446666666666666666666666666442 344555555666666666666666666666655 3444555666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
|.++..|+.|+.-|.++++.+|....+.
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 6666666666666666666666544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-05 Score=71.68 Aligned_cols=98 Identities=27% Similarity=0.265 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1088)
.+.+.+|.++-..|+.++|+.+|.+++......+....+++.+|.++...|++++|+..++..+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456667777777777777777777776633233344556667777777777777777777777776666 55666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l 403 (1088)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777777666554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=68.87 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=29.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001392 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1088)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1088)
+++..++|+.|+.++++++..+|.+ +..++..|.|+..+|++.+|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 3444444444444444444444444 3444444444444444444444444444444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00056 Score=68.37 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh----HHHHHH--HHHHHHHH----HHHhchhhhhhhhhHH
Q 001392 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV----RYERIA--ILNALGVY----YTYLGKIETKQREKEE 108 (1088)
Q Consensus 39 ~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~----~~~~~~--~~~~la~~----y~~~g~~~~~~~~r~~ 108 (1088)
.+.+|+..-.++.+...+++|..-|+..-+.+...+|-.+ .+++.. +-+.|-++ ...+|...
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpq-------- 139 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQ-------- 139 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcH--------
Confidence 5668999999999999999999888876555443332111 111100 11122222 22333322
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
+.+.-+.... ..+.....-+.+|.. +..+...++-+ ....+.++.++.-.|.|.-.+..+.+
T Consensus 140 ---esLdRl~~L~--------~~V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~ 202 (366)
T KOG2796|consen 140 ---ESLDRLHKLK--------TVVSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHS 202 (366)
T ss_pred ---HHHHHHHHHH--------HHHHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 1111111110 111111222222222 22333333322 23445556666666666666666766
Q ss_pred HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----D--PENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
++..+|...+.....+|.+-++.|+.+.|..+|+++-+. + ..+..+..+.+.+++..++ +..|...|.+++
T Consensus 203 vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn---~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 203 VIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN---FAEAHRFFTEIL 279 (366)
T ss_pred HHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc---hHHHHHHHhhcc
Confidence 666665544556666666666677776666666643322 1 1233344555555665555 666666666666
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 001392 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1088)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 300 (1088)
..+|.++.+.+..|.+.+..|+...|++..+.++...+.
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 667766666666666666666666666666666654433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=75.23 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
-.-|.-+|..|+|.+|..-|..+|...|..+ ..++.+.|.|+.+++.++.|+....++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3446677888888888888888888887763 334667788888888888888888888888888888888888888
Q ss_pred HhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
.+... +++|+..|.+++..+|....+.-..+.+-
T Consensus 179 ek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 179 EKMEK---YEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred Hhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 88766 88888888888888888776665555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00023 Score=71.09 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCChhHHHhhhhhhhcccchHHHHHHHHHh
Q 001392 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
.+..+..+++-+ ..+.+.++.++.-.|.|.-....++++++.+ |..|.....+|.+.++.|+.+.|..+|+..
T Consensus 165 ~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 165 EESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345555555533 3455566666777777777788888887777 566777778888888888888888888754
Q ss_pred hhcCCC-----CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHH
Q 001392 620 SDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1088)
Q Consensus 620 l~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A 694 (1088)
-+.... ........++-+ |.-. +++..|...|.+++..+|.++.+.++.|.++.-.|+...|
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 432211 112233334444 5555 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 001392 695 KDLFTQVQEAASGSVFVQMPDVWINLAHV 723 (1088)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~ 723 (1088)
++.++.+....|+.. .+..+.+||-.+
T Consensus 306 iK~~e~~~~~~P~~~--l~es~~~nL~tm 332 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHY--LHESVLFNLTTM 332 (366)
T ss_pred HHHHHHHhccCCccc--hhhhHHHHHHHH
Confidence 999999999888542 234455555433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-06 Score=69.49 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC-C----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001392 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1088)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~-~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~ 780 (1088)
+...++.++|.+|..+|++++|+.+|++++......+ + +.++..+|.+|...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5577899999999999999999999999998742222 1 6678899999999999999999999998763
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.6e-07 Score=90.49 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=159.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1088)
.-..|..|+.+|.|++|+.+|.+++. ..|.++..+.+.+.+|++...|..|..-+..++.++.....+|...+.+-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999997 567777889999999999999999999999999999888999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCC-----HHH--HHHHHHHHHH
Q 001392 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-----IEV--LNNIGVIHFE 460 (1088)
Q Consensus 388 ~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~--~~~l~~~~~~ 460 (1088)
.+|...+|...++.++.+.|.+....-.++.+-. ..++. + .........+ ... ...-|..++.
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S---l~E~~------I-~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk 246 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS---LRERK------I-ATKSTPGFTPARQGMIQILPIKKPGYKFSK 246 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc---hHhhh------H-HhhcCCCCCccccchhhhccccCcchhhhh
Confidence 9999999999999999999997766555544331 11110 0 0000000000 011 1223566666
Q ss_pred cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCC
Q 001392 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1088)
Q Consensus 461 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1088)
.|.++.++.++..-+.. ...+..+-.+ +..|.+.-+
T Consensus 247 ~~~~~~~i~~~~~~~A~-------------------------------------------~~~~~~L~~~-~~~~~KI~~ 282 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRAT-------------------------------------------IDDSNQLRIS-DEDIDKIFN 282 (536)
T ss_pred hhccccceeEeeccccc-------------------------------------------cCccccCccc-HHHHHHHhh
Confidence 67776666665443321 0011111112 455566667
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
++.++.-..+.+...|.+.....+.+..-.-.|...++...++.++.+.|.+.....
T Consensus 283 ~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 283 SNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred cchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchh
Confidence 778877777777667766555555555555566677777777777777776655433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=66.54 Aligned_cols=70 Identities=31% Similarity=0.388 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
..+|...++++.|+.+++.++..+|+++..+..+|.++...|++.+|+..|.++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678889999999999999999999999999999999999999999999999999999988877665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00022 Score=67.45 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-DRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
..+.+|.+.+..+ |. ....+.+|..+...|++.+|...|++++.- ...++..++++|...+..+++..|...++
T Consensus 74 R~~Rea~~~~~~A----pT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 74 RHLREATEELAIA----PT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HHHHHHHHHHhhc----hh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444555544443 53 445788999999999999999999999863 46788999999999999999999999999
Q ss_pred HHHHhCCCC-hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 187 RALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 187 ~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
++.+.+|.. .+...+.+|..+..+|.+..|...|+.++...| .+.+....+..+..+|.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr 208 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGR 208 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcc
Confidence 999998864 467788999999999999999999999999888 45666777777888875
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00062 Score=64.53 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHh-cCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHH
Q 001392 655 THLEKAKELYTRVIV-QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~-~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (1088)
|++.+|...|.+++. +.-.++..+.+++...+..+++..|...++++.+..|.- ..|+..+.+|.+|..+|.+..|
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~---r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF---RSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc---CCCCchHHHHHHHHhcCCchhH
Confidence 444444444444433 122344444444444455555555555555554444321 3444555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHH
Q 001392 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (1088)
Q Consensus 734 i~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~ 770 (1088)
...|+.++..+ +++....+.+..+.++|+..+|.
T Consensus 180 esafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 180 ESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 55555555543 22333344444445555444443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00094 Score=73.93 Aligned_cols=117 Identities=20% Similarity=0.093 Sum_probs=81.9
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
...+++.+|.+...+..-+.-+..+|+..+|+.++..++-..|.. -.+++.+|.++.+.|...+|--++.-++.-.|.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 334455555554444444444556788888888888887776654 346778888888888888887777777666665
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
. ...++.+|.++..+|.+......|..+.+.+|....+.
T Consensus 282 ~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 282 F-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred c-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 5 44477788888888888888888888888887654443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00034 Score=62.05 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~ 207 (1088)
+-..|..+...|+++.|++.|.+++...|.++.+|...|..+.-.|+.++|+..+.+++++.... ....+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986433 234578899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001392 208 YKLGQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1088)
..+|+.+.|+.-|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=67.54 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=60.9
Q ss_pred CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 672 p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
|.-..+++++|.+|...|++++|+.+|+++++... ++..+....++.++|.++..+|++++|+.+|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45567889999999999999999999999998741 12223457789999999999999999999999999864
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.9e-05 Score=83.57 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=43.9
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.+|+++..|+.+|.+|+..|+|++|+..|++++.++|++..+ |+.+|++|..+|++++|+..|++++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666666666533 666666666666666666666666664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.073 Score=58.92 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=79.1
Q ss_pred CcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
+...+.-..+-..+...|-+.+|...|......-|-....+..+..+-.. .-+...+..+|..++.....++.+|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44556666677778888899999999999988888877777666655322 2347788999999999888999999988
Q ss_pred hhhhhcccchHHHHHHHHHhhhc
Q 001392 600 GDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
-..-...|..+.+-.++.++++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 88888888888877777777663
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.067 Score=58.09 Aligned_cols=479 Identities=11% Similarity=0.088 Sum_probs=237.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001392 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 150 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1088)
.++.-++.+|+|...|+.+..-+-.+|.+++-.+.|+++..-.|-. +.+|......-...+++......|.++|...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-EHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-cHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 4556678899999999999999999999999999999999888877 44454444444455778888888888886533
Q ss_pred CHHHHHHHHHHHHhhch------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 001392 230 NVEALVALAVMDLQANE------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT 303 (1088)
Q Consensus 230 ~~~a~~~la~~~~~~~~------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 303 (1088)
+.+.|...-..-.+.++ ...+-+|.+..-.+.-.+|.....|...+..+-.-..
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~-------------------- 167 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEE-------------------- 167 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccc--------------------
Confidence 24444333222222211 0112334443333444456555555554443321100
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Q 001392 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI---YPDNCETLK 380 (1088)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~ 380 (1088)
++ ....+.+.+.-...|.+++. .+-. ++-.++..-.+++. -+.++... ....+.. .
T Consensus 168 -------~~-kwEeQqrid~iR~~Y~ral~---tP~~------nleklW~dy~~fE~---e~N~~TarKfvge~sp~y-m 226 (660)
T COG5107 168 -------LG-KWEEQQRIDKIRNGYMRALQ---TPMG------NLEKLWKDYENFEL---ELNKITARKFVGETSPIY-M 226 (660)
T ss_pred -------cc-cHHHHHHHHHHHHHHHHHHc---Cccc------cHHHHHHHHHHHHH---HHHHHHHHHHhcccCHHH-H
Confidence 00 01123334455555666553 1111 11111111111111 11111100 0001110 0
Q ss_pred HHHHHHHhcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHH-h-----cCC-HHHHH-HHHHHHHHHHHhcCCCCC
Q 001392 381 ALGHIYVQLGQIEKAQELL-----RKAAKIDPRDAQAFIDLGELL-I-----SSD-TGAAL-DAFKTARTLLKKAGEEVP 447 (1088)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~-----~k~l~~~p~~~~~~~~la~l~-~-----~~~-~~~A~-~~~~~a~~~~~~~~~~~~ 447 (1088)
.--..|....+....+..+ +++-+.......-|.+....- . .++ ..+-+ -++++++..++- .
T Consensus 227 ~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~-----~ 301 (660)
T COG5107 227 SARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY-----A 301 (660)
T ss_pred HHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh-----h
Confidence 0000011111111111000 000000000011122222211 1 111 11111 123444444332 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
+++|+.........++-+.|+.....++.. .+.+
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~----------------------------------------------spsL 335 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEM----------------------------------------------SPSL 335 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccC----------------------------------------------CCch
Confidence 567776666666777777777766665542 3335
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhh
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK---ARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~ 604 (1088)
.+.++.+|...++.+....+|.++...-. --+..+..-. .-|+++...+++-+-. ..-..+|..+.+.-.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~----r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~ 408 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLK----RKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVL 408 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHH----HHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHH
Confidence 66677777776666666666666543100 0000000000 0123322222221111 122334444445445
Q ss_pred cccchHHHHHHHHHhhhcC-CCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHH
Q 001392 605 KNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1088)
Q Consensus 605 ~~g~~~~A~~~~~~al~~~-~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~ 683 (1088)
+..-...|..+|-++-+.. ..++.|..+++.. |... |++.-|..+|+--+...|+++...+..-.
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E--~~~~------------~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE--YYAT------------GDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH--HHhc------------CCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 5556778888888776654 5566666555443 3344 77788888888888888887777777777
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 684 ~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
.+...++-..|..+|+++++..... .-..+|-.+...-..-|+...++.+=+.+...+|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKT---QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHh---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 7777888888888888776654311 12345555555556667777777766666666543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0061 Score=60.28 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=71.5
Q ss_pred hHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-----HHH
Q 001392 680 GAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQI 752 (1088)
Q Consensus 680 ~la~~l~~-~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~~ 752 (1088)
.+|.+|.. ..++.+|+..|+++-+-+.+.... .....++..+..-...++|.+||..|+++....-+++- -..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 34555543 367778888888887776542111 12345666677777889999999999998775322221 122
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 753 l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
++.-|.|++-..+.-.+...+++...++|.-..
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 344566777779999999999999999996433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00036 Score=61.85 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=83.5
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHH
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYL 756 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~L 756 (1088)
..-|.++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-++++++..+.... .+.+..-
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3457888899999999999999999988 78899999999999999999999999999988543333 5567778
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
|.+|...|+.+.|..-|..+-++...
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 88999999999999999988887653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0046 Score=61.11 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=74.0
Q ss_pred HHHhHHHHHHhc-CCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-----
Q 001392 527 VLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----- 594 (1088)
Q Consensus 527 ~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----- 594 (1088)
.+..+|.+|..- .++++|+.+|+++-.-... -..+++..+......++|.+|+..|+++....-+++.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 445567777655 7889999999988764332 2457788888888999999999999998877655554
Q ss_pred --HHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
.++.-|.+++-..+.-.+...+++.....|.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3345577777778877788888887777776
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.9e-05 Score=81.96 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=65.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+++++|.||..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999832 46999999999999999999999999997
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.005 Score=73.37 Aligned_cols=264 Identities=19% Similarity=0.178 Sum_probs=186.4
Q ss_pred chHHHHhHHHHHHhc-----CCHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHH
Q 001392 524 KVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKV 588 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~l~~al~~ 588 (1088)
+....+.+|.+|..- .+++.|+.+|+.+... .-.++.+.+.+|.+|.... +...|+.++.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 667777788877653 5889999999998761 1225567888999988753 667799999998776
Q ss_pred CCCChhHHHhhhhhhhccc---chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 589 NGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
. ++.+.+.+|.++..-. ++..|..+|..+...+ ...+.+.++.+ |....... .+...|..+|.
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G~gv~--------r~~~~A~~~~k 388 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELGLGVE--------RNLELAFAYYK 388 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhCCCcC--------CCHHHHHHHHH
Confidence 5 6778888999887765 5789999999998876 45667777777 66552222 67899999999
Q ss_pred HHHhcCCCCHHHHhhHHHHHHhc-CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH------c----cCHHHHH
Q 001392 666 RVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA------Q----GNFALAM 734 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~------~----g~~~~Ai 734 (1088)
++...+ ++.+...++.++... +.++.+...+....+..- .....+.+.+... . .+...+.
T Consensus 389 ~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~-------~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 389 KAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGY-------EVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhh-------hHHhhHHHHHHHhccccccccccccchhHHH
Confidence 999988 556666666655543 888888877777776542 1112222222211 1 2566677
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhcCCCHH
Q 001392 735 KMYQNCLRKFYYNTDAQILLYLARTHYEA----EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTAD 810 (1088)
Q Consensus 735 ~~~~~al~~~~~~~~~~~l~~La~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~ 810 (1088)
..|.++.. ..++.+...||.+|+.. .++..|...|.++.... ....||++.+ ...+.
T Consensus 460 ~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~-~e~g~----------- 520 (552)
T KOG1550|consen 460 SLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM-HEHGE----------- 520 (552)
T ss_pred HHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH-HhcCc-----------
Confidence 77666654 35678888999999885 34888999999988877 8999999995 44443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q 001392 811 EVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 811 ~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
..-. +..|.+++.+.+..+
T Consensus 521 ---g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 521 ---GIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred ---Ccch-hHHHHHHHHHHHhcC
Confidence 1122 677777777776644
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=67.36 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc
Q 001392 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~ 141 (1088)
.|+.|.+.+......+|.++..++.-|.+++..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0021 Score=66.65 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=133.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc-CCCCChHHHHHhhhHHHHHHh
Q 001392 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFAAL 643 (1088)
Q Consensus 565 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~d~~a~~~lg~~~y~~~~ 643 (1088)
-+.+....|++.+|.....+.+.-.|.+..++..--.+++-+|+...-...+++++.. ++....|+++. |.. -|..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~-Gmy-aFgL- 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH-GMY-AFGL- 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH-HHH-HhhH-
Confidence 3455667899999999999999999999999999889999999999999999998876 44433444321 211 1111
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 001392 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 723 (1088)
Q Consensus 644 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~ 723 (1088)
.+.|.|++|.+.-+++++++|.+.++...++.++...|++.++.++..+--..-..+. .....-|...+.+
T Consensus 186 --------~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 186 --------EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-MLASHNYWHTALF 256 (491)
T ss_pred --------HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-HHHhhhhHHHHHh
Confidence 1239999999999999999999999999999999999999999999887655432111 1223456677888
Q ss_pred HHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 724 YFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 724 ~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
++..+.|+.|+.+|..-+-+-....|.
T Consensus 257 ~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhcccchhHHHHHHHHHHHHHhhccch
Confidence 999999999999998766544344553
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0069 Score=67.39 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001392 676 YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754 (1088)
Q Consensus 676 ~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~ 754 (1088)
+...++|-+|. -.|+...|+.++..+....|. .......+||.+++..|-...|-.++.++|.. ....|-..+
T Consensus 607 w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~ 680 (886)
T KOG4507|consen 607 WLILNEAGLYWRAVGNSTFAIACLQRALNLAPL----QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFL 680 (886)
T ss_pred EEEeecccceeeecCCcHHHHHHHHHHhccChh----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHH
Confidence 33344555554 579999999999999988873 33456789999999999999999999999998 466688999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 755 ~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.+|+++....+.+.|++.|+.|+++.|+++.+.-.+-.+
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999999999887766554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=71.80 Aligned_cols=127 Identities=12% Similarity=0.186 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (1088)
+..+.|..+|.++++..+.+...|...|.+-.. .++...|..+|+.+++..| .++..|..+...+...|+...|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 779999999999997666677888888888666 5666669999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhH
Q 001392 734 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (1088)
Q Consensus 734 i~~~~~al~~~~~~~-~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 786 (1088)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999998854333 34677777778888999999999999999999986553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.016 Score=69.15 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG--- 176 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g--- 176 (1088)
...|..+|+.+... .+..+.+.+|.+|+.- .+.+.|+.+|..+... .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45788888887654 4677777778777655 5789999999888761 1125667888888888743
Q ss_pred --ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhH
Q 001392 177 --RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1088)
Q Consensus 177 --~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1088)
++..|+.+|.++-.....+ ..+.+|.|+..-. ++..|..+|..|... .+..+.+.++.++..- |-..+.
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999998888776544 4677888887765 567888888888654 5778888888777653 223347
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTET 293 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 293 (1088)
..|..++.++...+ ++.+...++.++... +.+..+...+..
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHH
Confidence 88888888888877 444444444443322 555444443333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=71.88 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
+|+.......+.+..+.|..+|.++++..+.+...|...|.+.+. .++.+.|..+|+.+++..|.+ ..++......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 344444444444444555555555543333334444444444344 233333555555555555544 334444444444
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
..|+.+.|+.+|++++..-|... ..|......-...|+ ......+..++.+..|..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPED 140 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhh
Confidence 55555555555555544433322 334444444444554 555555555555555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00048 Score=65.74 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC-
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRG----------RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ- 212 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----------~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~- 212 (1088)
|+.|.+.++.....+|.++.+++.-|.++..+. -+++|+.-|+.++.++|+. ..+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhh
Confidence 688999999999999999999988888877653 3678999999999999999 7788889999987763
Q ss_pred ----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 213 ----------LGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 213 ----------~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
|++|..+|+++...+|+|......|...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7899999999999999998887777665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0083 Score=59.77 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=111.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHH-HHHH
Q 001392 350 QVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRDAQAF-IDLG 417 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-----p~~~~~~-~~la 417 (1088)
.+|...++|++|..++.++.+-+.++ ..++-..+.+...+..+.++..+|+++..+. |+....- -.-+
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 34444444555555544444332221 1233333444444455555555555554432 3322222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001392 418 ELLISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1088)
Q Consensus 418 ~l~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1088)
.++...+++.|+.+|++++.+....+... ..+.+...+.++.+...|.+|-..|.+-......
T Consensus 119 k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---------------- 182 (308)
T KOG1585|consen 119 KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---------------- 182 (308)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------------
Confidence 44577889999999999998877643322 2467777888899999999988888765442110
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHc
Q 001392 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKAR 572 (1088)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~ 572 (1088)
+ ..-+.....+.....++....++..|...|+..-++ .|+...+.-+|...| ..
T Consensus 183 --------------~-------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 183 --------------C-------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred --------------H-------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 0 011223334445555666667899999988876553 344455555555444 56
Q ss_pred CChHHHHHHHHH
Q 001392 573 NNLQLSIELVNE 584 (1088)
Q Consensus 573 g~~~~A~~~l~~ 584 (1088)
|+.++....+..
T Consensus 241 gD~E~~~kvl~s 252 (308)
T KOG1585|consen 241 GDIEEIKKVLSS 252 (308)
T ss_pred CCHHHHHHHHcC
Confidence 777776665543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=71.64 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=69.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
..|..++....|..|+..|.+++.++|.. +..+.+.+.|++++.+++.+.....++++++|+.+.+.+.+|...+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34555666777777777777777777777 56677777888888888888777888888888777777777777777766
Q ss_pred HHhHHHHHHHHHHHHHh
Q 001392 247 AAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~ 263 (1088)
+..|+..+++++.+
T Consensus 94 ---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 ---YDEAIKVLQRAYSL 107 (284)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 77777777777554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00048 Score=68.08 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=94.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~ 426 (1088)
-|..++....|..|+.+|.+++.++|..+..+.+.+.||++.++++.+.....+++++.|+.+..++.+|..+ ....+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4555666677888889999999999988888889999999999999999999999999999999999998888 888889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001392 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (1088)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (1088)
.|+..+.++..+......+....+...|-.+-...=...++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 9999999888887766555445555555544444333334333
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.21 Score=55.42 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQ 190 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~ 190 (1088)
.-..+|..+....+.++..|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 556788899988899999999999988888989999999999999999999999999988888776 9999999999999
Q ss_pred hCCCChhHHH
Q 001392 191 VHPSCPGAIR 200 (1088)
Q Consensus 191 ~~p~~~~~~~ 200 (1088)
.+|++ +.+|
T Consensus 169 ~npds-p~Lw 177 (568)
T KOG2396|consen 169 FNPDS-PKLW 177 (568)
T ss_pred cCCCC-hHHH
Confidence 99999 5544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.1 Score=60.74 Aligned_cols=121 Identities=20% Similarity=0.183 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
....+..++....... |..+-..+..|+++...|+.++|+..|++++.... -..-....++.++.++....+|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4455666666666443 55556677777777777777777777777663111 1122345577888888888888888
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHhC
Q 001392 362 LTNFEKVLEIYPDN-CETLKALGHIYVQLGQI-------EKAQELLRKAAKID 406 (1088)
Q Consensus 362 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~k~l~~~ 406 (1088)
..+|..+.+.+.-+ ....+..|.|+...++. ++|..+|.++....
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 88888888865543 34555667788888887 88888888876543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.009 Score=59.52 Aligned_cols=203 Identities=15% Similarity=0.111 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001392 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1088)
..+..-+.+|...+++++|...+.++.+-..++ ..++-..+.+. ....+.++..+|+++...+...|.+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345555777888899999999999998654443 23444555566 78899999999999999999888777666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHH
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
.-...+.-....-+.+.|+.+|++++..-.. +. ....-...+-
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~-----~d--------------------------------r~~ma~el~g 154 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEE-----DD--------------------------------RDQMAFELYG 154 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-----cc--------------------------------hHHHHHHHHH
Confidence 5555666667888999999999999873110 00 0111334566
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHH------HcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC----CCChhHHHhh
Q 001392 530 NLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GKYPNALSML 599 (1088)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~~~~~~~~l 599 (1088)
..++++.+...+.+|...+.+-.. ..|.....+.....+++...++..|..+++...++. |++..+..+|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 678889999999998877765433 233334456666667777889999999999877654 4445566565
Q ss_pred hhhhhcccchHHHHHHHH
Q 001392 600 GDLELKNDDWVKAKETFR 617 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~ 617 (1088)
-.. +..|+.++...++.
T Consensus 235 L~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 235 LTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHH-hccCCHHHHHHHHc
Confidence 555 35577776666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0044 Score=68.46 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=118.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhh
Q 001392 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (1088)
Q Consensus 568 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~ 647 (1088)
-..+..+...-++.-.+++.++|+++.++..++.- ...-..+|..+|+++++.... .++.. ....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~----- 241 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ----- 241 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh-----
Confidence 34456677777888888888888888888777642 233467778888877765322 11111 0000
Q ss_pred cChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001392 648 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1088)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (1088)
...-+-..+..-+. .+++...+|.+..+.|+.++|++.|+.+++..|.. ++..++.+|..+++
T Consensus 242 ------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LL 306 (539)
T PF04184_consen 242 ------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALL 306 (539)
T ss_pred ------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHH
Confidence 00001111111112 35566788999999999999999999999887732 46679999999999
Q ss_pred HccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcc---------------HHHHHHHHHHHHHhCCCChh
Q 001392 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 726 ~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~-~g~---------------~~~A~~~l~~al~~~p~~~~ 785 (1088)
.++.|.++..++.+. .....+..+.+.|.-+..-.+ .|+ -..|.+.+.+|++.+|.-|.
T Consensus 307 elq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 307 ELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 999999999886553 211123445555544333222 111 23477889999999998764
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=75.36 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcC
Q 001392 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124 (1088)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~ 124 (1088)
.+....=-.|+-+.++++|..+..... ....+..+..|+.+..-.+..... . ...+...|..++.......
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~-------i~~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~y 263 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSEN-------IRSPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKRY 263 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCC-------cchHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHhC
Confidence 333444455788888888888755321 111233333333222222222210 1 3456678999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1088)
|+.+..++..|.++...|+.++|+..|+.++..... ....++.+|.++..+++|++|...|.++.+.+..+.....
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999999999999999999999988743221 2456888999999999999999999999998888777778
Q ss_pred HHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQL-------GKARQAFQRALQ 225 (1088)
Q Consensus 201 ~~lg~~~~~~g~~-------~~A~~~~~~al~ 225 (1088)
+..|.|+..+|+. ++|...|.++-.
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8899999999988 666666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=52.29 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
|.+|+.+|..|...|++++|+..|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567888888888888888888888888888888888887764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0049 Score=64.01 Aligned_cols=162 Identities=12% Similarity=0.082 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHH
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-YPDN---CETLKALGHIY 386 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~ 386 (1088)
-+.+....|++.+|...+.+.++ ..|....++..--.+++..|+...-...+++++.. +|+. ..+.-.++..+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 34456677899999999999998 55666666666777888899999999999999876 5554 45666778888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001392 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (1088)
Q Consensus 387 ~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (1088)
...|-+++|.+.-+++++++|.+..+...++.++ ..+++.++.++..+....-... .-....-|...+.++...+.|+
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-WMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-hHHHhhhhHHHHHhhhcccchh
Confidence 8999999999999999999999999999999999 8999999988876654433211 1111234556788888999999
Q ss_pred HHHHHHHHHHh
Q 001392 466 SAHQSFKDALG 476 (1088)
Q Consensus 466 ~A~~~l~~al~ 476 (1088)
.|+.+|..-+-
T Consensus 265 ~aleIyD~ei~ 275 (491)
T KOG2610|consen 265 KALEIYDREIW 275 (491)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0033 Score=69.45 Aligned_cols=165 Identities=15% Similarity=0.167 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC-
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------DN- 161 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~- 161 (1088)
|+.+...-++.-.+|++++|+.+.+|+.++.-.. ....+|..+|+++++... .+
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 3455667788889999999999999988875322 235667777776665311 01
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHH
Q 001392 162 -VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALA 238 (1088)
Q Consensus 162 -~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la 238 (1088)
+.+...+|.|+.+.|+.++|++.|+.+++..|. +...++..+..|+..++.|.++...+.+.-.. -|+.....+.-+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 345577899999999999999999999998876 34668899999999999999999999886433 245555555555
Q ss_pred HHHHhh-ch------------HHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 239 VMDLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 239 ~~~~~~-~~------------~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
.+..+. ++ ...-..|++.+.++++.||.-+..+.
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 443331 11 11234577889999999998876543
|
The molecular function of this protein is uncertain. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.5 Score=56.69 Aligned_cols=350 Identities=14% Similarity=0.152 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcC-CCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHH
Q 001392 39 PLDLWLIIAREYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (1088)
Q Consensus 39 ~~~~~~~la~~y~~~g~~~~a~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~ 117 (1088)
+++---....++.-.+-..+-+++|++++ ++++ |++. ..+.+.|.-.-.+. + -...+.+.
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~---Fse~----~nLQnLLiLtAika---d---------~trVm~YI 1043 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV---FSEN----RNLQNLLILTAIKA---D---------RTRVMEYI 1043 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc---cccc----hhhhhhHHHHHhhc---C---------hHHHHHHH
Confidence 33334444567778888888888888864 3221 3222 11222221111111 1 11345555
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
+++...|. . ..|.+....+-|++|..+|.+. .-|..+...+. -..++.+.|.++.+++- .+
T Consensus 1044 ~rLdnyDa---~---~ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VLi---e~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1044 NRLDNYDA---P---DIAEIAIENQLYEEAFAIFKKF----DMNVSAIQVLI---ENIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred HHhccCCc---h---hHHHHHhhhhHHHHHHHHHHHh----cccHHHHHHHH---HHhhhHHHHHHHHHhhC------Ch
Confidence 55544332 1 2466777788889999888764 12333333222 24466667766665542 26
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1088)
.+|..+|.+-.+.|...+|+..|-++ +++..+.....+....|. |++-+.++.-+.+.-. .+.+-..|...
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 78889999999999999999988765 456666677777777777 8877777776655432 22233445556
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCC
Q 001392 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1088)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1088)
|...++..+.+.++. .|.. .-.-..|.-++..|.|+.|.-+|...- .|..++..+..+|+
T Consensus 1176 yAkt~rl~elE~fi~--------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vS-----------N~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVS-----------NFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHhchHHHHHHHhc--------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHH
Confidence 666776655544432 1222 334567888888888988887776543 26778888889999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001392 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1088)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~~~~~~~~la~l~-~~~~~~~A~~~~~~a 435 (1088)
|+.|....+++ ++..+|.....++...+.+.-|.-+ .++ --+..-+-.+...| ..|-+++-+..++.+
T Consensus 1236 yQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiC-----GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1236 YQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQIC-----GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhc-----CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 99998888776 4566777777777666655444221 111 11344455666677 777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 436 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (1088)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l 471 (1088)
+.+-... ...+..+|.+|.+- ++++-.+++
T Consensus 1306 LGLERAH-----MgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1306 LGLERAH-----MGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred hchhHHH-----HHHHHHHHHHHHhc-CHHHHHHHH
Confidence 6653331 44555566665543 334433333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.015 Score=63.84 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH----CCCChhHHHhhhhhhhc---ccchHHHHHHHHHhhhcCCCCChHHH
Q 001392 559 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 631 (1088)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~d~~a~ 631 (1088)
++....+-..|....+|+.-+.+.+.+-.+ -++.+.+.+.+|.++.+ .|+.++|+.++..++.....+++-++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344455555566666666666666655544 34455666677777776 67777777777776665555566666
Q ss_pred HHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHH
Q 001392 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1088)
Q Consensus 632 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~ 695 (1088)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++.-.|.-.+..
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccch
Confidence 667777 66553321111 11559999999999999996 5566666777777777544433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00036 Score=51.17 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677777777777777777777777777777777777664
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00024 Score=77.81 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
...|+.|+..|.++++++|+.+..+-.++.+++..++|..|+.-+.++++.+|....+|+..|.+....+.+.+|+..|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCChhHHHHHHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~ 206 (1088)
....+.|+. +.+...+..|
T Consensus 97 ~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 97 KVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HhhhcCcCc-HHHHHHHHHH
Confidence 666666666 3433333333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.23 Score=53.71 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001392 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1088)
Q Consensus 232 ~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 299 (1088)
.++..++.+++..+......+|...+..+-...|+.+.++..-..+....++.+.+...+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 34667778888877777778888888888777888777776666666667778888888888876543
|
It is also involved in sporulation []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.66 Score=55.55 Aligned_cols=277 Identities=17% Similarity=0.058 Sum_probs=166.1
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch-hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc
Q 001392 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-----DN 375 (1088)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 375 (1088)
+...+.+..-+..+...|...+|+...-.+- +|... ......+.-++..++..- +..+++.-| .+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 4446777888888888999999988765542 22221 122233333444444332 333333333 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~--~-------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
+......+.......++.+|..++.++...-|. . ....-..+.+. ..++++.|....+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 566666777778888999999988887654332 1 12222233444 7899999999999999998886666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcch
Q 001392 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1088)
....++..+|.+..-.|++.+|..+...+.+..... +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------------------------~~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------------------------DVYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------------------------ccHHHHH
Confidence 667888899999999999999999999887742100 0112244
Q ss_pred HHHHhHHHHHHhcCCHHHHH--HHHHHH----HHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH----CCCChh-
Q 001392 526 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 594 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~- 594 (1088)
.+.+..+.++..+|+...|. ..|... +...|-........+.++...-+++.+..-....+.. .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55566678888888443333 223222 2233432222222222222222244444444333333 233222
Q ss_pred --HHHhhhhhhhcccchHHHHHHHHHhhhcCC
Q 001392 595 --ALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1088)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 624 (1088)
+++.++.++...|+.++|...+..+.....
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 234678888888888888888887766443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.066 Score=60.61 Aligned_cols=151 Identities=13% Similarity=0.033 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCCc
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEF 341 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~ 341 (1088)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+..+...|+..+|+..+...+. ..... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~-~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN-ID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-cc
Confidence 3345567788888888889998888888887764322 222567788888888888998899888888776 21111 00
Q ss_pred hhhHhhHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCHHHH
Q 001392 342 IFPYYGLGQVQLK--LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL------GQIEKAQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 342 ~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~k~l~~~p~~~~~~ 413 (1088)
......+...... ............ ......++..+|...... +..+.++..|..++..+|....+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred cccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 0000000000000 000000000000 011234556666666555 677777777777777777777777
Q ss_pred HHHHHHH
Q 001392 414 IDLGELL 420 (1088)
Q Consensus 414 ~~la~l~ 420 (1088)
+.+|..+
T Consensus 296 ~~~a~~~ 302 (352)
T PF02259_consen 296 HSWALFN 302 (352)
T ss_pred HHHHHHH
Confidence 7777654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00049 Score=75.50 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
-..+..++.-+.|+.|+..|.+++.++|+++..+-.++..+++.++|..|+.-+.++++.+|.. ...|+..|..+..++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3467778888999999999999999999999999999999999999999999999999999998 677899999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.+.+|...|+....+.|+.+.+...+..+..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999999988777665543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0053 Score=61.01 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
..++..-|.-++..|+|.+|...|..|+..-......+.... ...+++......+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e-------------------------~eW~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE-------------------------PEWLELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC-------------------------hHHHHHHHhhhHH
Confidence 456677788999999999999999999863211111000000 0001122335567
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 594 (1088)
+.|++.|+...|++-++++....++..+|.+..+|++.|.+....=+..+|..-|..++.++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8889999999999999999999999999999999999999988888889999999999998886443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.066 Score=58.83 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHHHHH
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQRA-LQLDPENVEALV 235 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~a~~ 235 (1088)
....+-.+|....+|+.-+.+++.+-.+ -++. ..+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444444555555666555555554443 1222 4445556666666 66666666666663 333444566666
Q ss_pred HHHHHHHhh------chHHhHHHHHHHHHHHHHhCCCCH
Q 001392 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 236 ~la~~~~~~------~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
.+|.+|... .+....++|+..|.+++..+|+.-
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 666555432 123347888999999998886543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00043 Score=47.19 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.4
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001392 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~ 148 (1088)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.34 Score=54.71 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=110.6
Q ss_pred CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHH-HhcCCC--
Q 001392 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYNT-- 748 (1088)
Q Consensus 672 p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~-~~~~~~-- 748 (1088)
......+..++.+..+.|+++.|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .+....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345667888999999999999999999999886532211 2578889999999999999999999999888 222110
Q ss_pred ----------------------C-------HHHHHHHHHHHHhh------ccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 749 ----------------------D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 749 ----------------------~-------~~~l~~La~~~~~~------g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
. ..++..+|.-.... +..+++.+.|..+.+++|.....++++|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1 34455556555556 777888999999999999999999999997
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001392 794 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (1088)
Q Consensus 794 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 833 (1088)
+.......-.... ...+ .....-+..|+..|-.-...+
T Consensus 302 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 302 NDKLLESDPREKE-ESSQ-EDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHhhhhccc-ccch-hHHHHHHHHHHHHHHHHHhhC
Confidence 6555442221111 1111 233444555666665544444
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.22 Score=53.81 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=79.0
Q ss_pred chHHHHhHHHHHHhcC-CHHHHHHHHHHHHHHc----------CCc----HHHHHHHHHHHHHcCChH---HHHHHHHHH
Q 001392 524 KVTVLFNLARLLEQIH-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEA 585 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~----------p~~----~~~~~~la~~~~~~g~~~---~A~~~l~~a 585 (1088)
-..++++.|......+ +++.|..++++++..- |+. ..++..++.++...+.++ +|..+++.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4568899999999999 9999999999998752 111 446777888888777654 456666667
Q ss_pred HHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCC
Q 001392 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1088)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 624 (1088)
-...|+.+.++...-.++.+.++.+.+...+.+++...+
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 677788888887777777778999999999999998765
|
It is also involved in sporulation []. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.13 Score=52.18 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=146.0
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1088)
.|+++...++..+|.+-.+|..+-.++-..+ ++.+-+.++..++..+|.|...|..+-.+.-..|++. .-+.+.+.++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776654 5788899999999999999999999999999999988 8899999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-c--hHHhHHHHHHHHHHHHHhCCC
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-N--EAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~--~~~~~~~Al~~~~~al~~~p~ 266 (1088)
..+..+ -.+|...--|+...+.++.-+.+...+++.+-.|-.||...-.+.... | .....+.-+.+..+.+.+.|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988877 566777788888888899999999999999888877776543322221 1 112356677888899999999
Q ss_pred CHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH
Q 001392 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1088)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~~l 295 (1088)
+..+|+.|..++.. .| .+..+..+...+.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999888875 44 2344444444444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.11 Score=56.78 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+|++..|.+-+..+++..|.+|......+.+....|.|+.|...+..+-..-..-..+...+-+.++..|+++.|+....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 56777888888889999999999999999999999999999999987766655556677777788899999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
-++...-.. +.+....+...-.+|-++++...|++.+.++|.....|
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888766666 44444445566788999999999999999988644333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00044 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHhcCCCCHHHHhhHHHHHHhcCCchHHH
Q 001392 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1088)
Q Consensus 664 ~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~ 695 (1088)
|+++++++|+|+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.66 Score=55.57 Aligned_cols=238 Identities=15% Similarity=0.081 Sum_probs=141.6
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN- 594 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~- 594 (1088)
+......+.......++.+|..+..++...-|. .....-..+.+....|+++.|.++.+.++..-|.+..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 344444556666677777777777766653332 1233444566677788888888888888877665433
Q ss_pred ----HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHH-----hhhHHHHHHhhhhhcChhHHHHH--HHHHHHH
Q 001392 595 ----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS-----LGNWNYFAALRNEKRAPKLEATH--LEKAKEL 663 (1088)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~-----lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~~ 663 (1088)
++..+|.+..-.|++.+|..+...+.+.....+.+-+.. -..+ .... |+ +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~~ 561 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEKA 561 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHHH
Confidence 566777788888888888888877776544444442211 1222 2222 42 2222222
Q ss_pred H----HHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCch-hHHHHHHHHHHHccCHHHHHHHH
Q 001392 664 Y----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMP-DVWINLAHVYFAQGNFALAMKMY 737 (1088)
Q Consensus 664 ~----~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~-~~~~~la~~~~~~g~~~~Ai~~~ 737 (1088)
| .+-+...|...+..-..+.++...-+++.+..-.....+.... ...+..+ -+++.|+.+++..|++++|....
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3 2334445655555555555554443466666666555554321 1111122 23358899999999999999999
Q ss_pred HHHHHHhcCCC-C----HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 738 QNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 738 ~~al~~~~~~~-~----~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
..+......+. . ..+.......|...|+...|...+.+
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99888765542 1 12222233445668999999888766
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.94 Score=52.19 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1088)
+++|...|-.+-.. + ....++...|+|-.+.+++...-. ...+.....++..+|..+.....++.|.++|.
T Consensus 750 feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766543221 1 223456778888888777764321 12233446789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
..-. .-+++.+++....|++- +.+...-|++...+-.+|.++...|.-++|.+.|-+.- .|.
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk- 882 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK- 882 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-
Confidence 7642 33456777777777653 34444458888999999999999999999999886642 221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1088)
Q Consensus 410 ~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~a 474 (1088)
+ .+..+...+++.+|.+..++. ..+....+....+.-+...++.-+|++..+++
T Consensus 883 --a--Av~tCv~LnQW~~avelaq~~-------~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 --A--AVHTCVELNQWGEAVELAQRF-------QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred --H--HHHHHHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 122233556677776654432 11111223333444556667788888877776
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0049 Score=61.24 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDN----------VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+.++...|+-++..|+|.+|...|..++.. .|.. .+.+++.+.|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356677888888888888888888777532 2322 2334444444455555555555555555
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
...|.+ ..+++..|.+....=+..+|..-|.++|+++|
T Consensus 258 ~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 555544 34444444444444444555555555555444
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=1 Score=52.46 Aligned_cols=304 Identities=14% Similarity=0.079 Sum_probs=151.3
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-hcCC
Q 001392 353 LKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-IDLGELL-ISSD 424 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~-~~la~l~-~~~~ 424 (1088)
+..|+...|.+.+...+-.. |. ..-+++.+|.++...|.- ...++...++...+....+ ..||.-+ ..|
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG- 444 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMG- 444 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcc-
Confidence 35678888888877766442 11 134788888888877765 7778877776654332211 1122212 222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
..-...|++....+..........+-..+|.+....++.+.-..++.-+.+.
T Consensus 445 -Sa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ET--------------------------- 496 (929)
T KOG2062|consen 445 -SANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQET--------------------------- 496 (929)
T ss_pred -cccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhh---------------------------
Confidence 2223455555554433211111223344555555555443333344333321
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-cCC-cHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQD-YVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
......--..+|..+...|+.++|..+.++++.- +|- .....+.++..|.-.|+..--..++
T Consensus 497 ----------------QHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 497 ----------------QHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred ----------------hHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 1112233334555666667777888887777652 222 1234556677777777765544444
Q ss_pred HHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH-HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHH
Q 001392 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1088)
Q Consensus 583 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~-a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1088)
.-++.-..++..-...++.-+.-..+.+.-..+..-+.+.+..+-.| +-+.||-. + .. .-...|+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIa-C-AG------------tG~~eAi 626 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIA-C-AG------------TGLKEAI 626 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhh-h-cC------------CCcHHHH
Confidence 44333222333322222322333345555555555444444433333 34455533 2 22 2245677
Q ss_pred HHHHHHHhcCCCCH---HHHhhHHHHHHhcC-----CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001392 662 ELYTRVIVQHTSNL---YAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1088)
Q Consensus 662 ~~~~~al~~~p~~~---~a~~~la~~l~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (1088)
.+++-+.. +|.+. -|+..+|.+++++. ++..-.+.|.+++.. .+.++...+|-++.
T Consensus 627 ~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d-------KhEd~~aK~GAilA 690 (929)
T KOG2062|consen 627 NLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND-------KHEDGMAKFGAILA 690 (929)
T ss_pred HHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh-------hhhHHHHHHHHHHH
Confidence 77777666 66532 35556666666553 333334444444432 24555666665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.03 E-value=2.4 Score=56.36 Aligned_cols=378 Identities=12% Similarity=0.040 Sum_probs=205.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.++.+-++.+.|..|..+++.-.............++.+-.+|...++++.-......-. ..+ .+.......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~----sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADP----SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCc----cHHHHHHHH
Confidence 677888899999999999988521111112223445555568989999888776665321 112 244556667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD 430 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~--~~~~~~~A~~ 430 (1088)
...|++..|..+|+++++..|+....+...-......+.+...+...+-.....+....-|+.++.-- ..++++.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 78899999999999999999998877777777777888888888877776666666666666666533 6666655444
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE-----SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1088)
++. . +......+. .+|.+.....+-+ ..++..+..+-..-...-.++ +........+.....
T Consensus 1540 ~l~--~------~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~----Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1540 YLS--D------RNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEG----SYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhh--c------ccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccc----hHHHHHHHHHHHHHH
Confidence 322 0 000000111 0344333332211 111211111110000000000 000001111111000
Q ss_pred hhhhhh-ccC--CCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHH-H--HcC----CcHHHHHHHHHHHHHcCCh
Q 001392 506 QLFHRF-END--GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL-F--KYQ----DYVDAYLRLAAIAKARNNL 575 (1088)
Q Consensus 506 ~~~~~~-~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~--~~p----~~~~~~~~la~~~~~~g~~ 575 (1088)
.-++.+ ... .........+..-|.+....-....+..+-+-.+++.+ . .+| ....+|+..|.+....|.+
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 000000 000 00000111111222222222111122333333333332 2 233 3478999999999999999
Q ss_pred HHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCC---------ChH-------HHHHhhhHHH
Q 001392 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK---------DSY-------ATLSLGNWNY 639 (1088)
Q Consensus 576 ~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------d~~-------a~~~lg~~~y 639 (1088)
+.|...+-.+.+.. -+.+....+..++..|+...|+..++..+..+-.. ... +.+.++.+
T Consensus 1687 q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~-- 1762 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKY-- 1762 (2382)
T ss_pred HHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHH--
Confidence 99999998887766 56788899999999999999999999999644221 111 12222211
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Q 001392 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684 (1088)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 684 (1088)
..... .-....-+.+|..+.+..|.....++.+|..
T Consensus 1763 ~~es~---------n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1763 LEESG---------NFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HHHhc---------chhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 11100 0234455678899999998655555555533
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.072 Score=55.42 Aligned_cols=133 Identities=17% Similarity=0.083 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...-+..+......|++.+|...|..++...|.+..+.+.+|.++...|+.+.|..++...-.................+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455666777777888888888888888888877788888888888888777777766543322222111000011222
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
.+.....+. ..+++.+..+|++..+-+.++..+...|+ .+.|+..+-..++.+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d 266 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRD 266 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhc
Confidence 222222211 22344445566666666666666666666 666666666555554
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.036 Score=57.98 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHH
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~ 792 (1088)
..|-.-|+-|++.++|..|+..|.+.|+.--..++ ...|.+-+-|.+..|+|..|+.-..+++.++|.+.-.++.-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34445577888888888888888888887333333 5556677888888888888888888888888888887777777
Q ss_pred H
Q 001392 793 A 793 (1088)
Q Consensus 793 ~ 793 (1088)
|
T Consensus 162 c 162 (390)
T KOG0551|consen 162 C 162 (390)
T ss_pred H
Confidence 6
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0017 Score=44.40 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
.+++.+|.+++..|++++|+++|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.019 Score=64.05 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=120.7
Q ss_pred ChHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001392 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1088)
Q Consensus 25 ~~~~l~~~L~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~--y~~~g~~~~~ 102 (1088)
||..|+.+|..-|--.+..++++.++..+|+...|..++++|+-. | ++. ++.....+ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 899999999999999999999999999999999999999998621 1 000 00000000 00011100
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCC
Q 001392 103 QREKEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (1088)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~---~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a-~~~la~~~~~~g~ 177 (1088)
+--..+.|- .+++.....+.++|-+..|+++++-.+.++|. ++.. ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 000012222 34556678888999999999999999999998 6654 4444555677788
Q ss_pred hHHHHHHHHHHHHhCC-C---ChhHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 001392 178 YSDSLEFYKRALQVHP-S---CPGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p-~---~~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1088)
|+--+.+++....... + ..+...+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888887655211 1 1245678889999999888 7888888888887664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.077 Score=51.61 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
.+...++..+...|++++|...++.++....+..-...+-..++.+++..|.++.|+..+...... .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 345556777777777777777777776432222223344566777777788888777777655321 1123345567778
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
+...|+..+|+..|.+++...+..
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 888888888888888877776443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.89 E-value=3.1 Score=55.44 Aligned_cols=363 Identities=13% Similarity=0.076 Sum_probs=198.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHH-HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001392 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERI-AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1088)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 123 (1088)
++|.+-++.|.|..|+..+++-...+. ..... ..+..|-.+|..++..... .-... ....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDgV-----------~Gv~~-~r~a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDGV-----------EGVSA-RRFA 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcchh-----------hhHHH-Hhhc
Confidence 678888999999999999998421111 11222 2334444466666655421 11111 0122
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+| .+..........|++..|..+|+++++.+|++...+.+.-...+..|.+...+...+-.....++........-
T Consensus 1449 ~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1449 DP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred Cc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
Confidence 33 45666777778899999999999999999999989998888999999999998877776665555533333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHH--hHHHHHHHHHHHHHhCC--------CCHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA--GIRKGMEKMQRAFEIYP--------YCAMALNY 273 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~--~~~~Al~~~~~al~~~p--------~~~~~~~~ 273 (1088)
-.+-|++++++.-..... ..+-.+..+.. +|.+.+.....+ ...+.+...+..+ +.| .....+..
T Consensus 1525 ~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEI 1599 (2382)
T ss_pred HHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHH
Confidence 345588888887665544 12222233321 444444332211 1112222222111 111 00011111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCCchhhHhh
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPHEFIFPYYG 347 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~ 347 (1088)
+..+... -+. ....+........ .......|.+....-....+..+-+-.+++++-.. .........|+.
T Consensus 1600 ~~kLH~l-~el---~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1600 LMKLHLL-LEL---ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHHH-HHH---HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 1111100 000 0011111111111 11112222222222112222333344444443322 123456678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC----------C------H
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PR----------D------A 410 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-p~----------~------~ 410 (1088)
.|++....|+++.|..++-++.+.. -+.+....|..+...|+-..|+.++++.+..+ |+ . .
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~ 1753 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFK 1753 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhh
Confidence 9999999999999999888887765 56788888999999999999999999998654 22 1 1
Q ss_pred HHHHHHHHHH-hcCCH--HHHHHHHHHHHHHHHh
Q 001392 411 QAFIDLGELL-ISSDT--GAALDAFKTARTLLKK 441 (1088)
Q Consensus 411 ~~~~~la~l~-~~~~~--~~A~~~~~~a~~~~~~ 441 (1088)
.+.+.++... ..++. ..-+++|..+..+.+.
T Consensus 1754 ~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1754 KAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 2233333333 44442 3445666677666654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=44.11 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.051 Score=52.82 Aligned_cols=103 Identities=21% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1088)
.+...++..++..|+++.|+..+..++..+......+.+-..++++...+|.+++|+..+..... ...........
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHh
Confidence 34556778888889999999999888876666666677888999999999999999998876542 22233446678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1088)
|.++...|+-.+|+..|.+++...+..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999999987544
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=2.5 Score=52.90 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001392 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1088)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 123 (1088)
+.+-.++.....|+.|+..+.++..+ ||+- .+--.+.+.+|...+..+....+ ...|.+|+..|+++..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES-----FPGR-KEGYEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLHG- 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc-----CCCc-ccchHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhcC-
Confidence 34446677888899999999997655 4432 24456777788777766655432 2678999999998754
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-----RYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-----~~~~Al~~~~~al~~~p~~ 195 (1088)
.|.-|.-|+++|.+|-..|+|++-+++|..+++..|++|..-...-.+.++.. +-..|+...--++..-|..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 47788899999999999999999999999999999998876555555444432 2344555555556666665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0022 Score=43.89 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0031 Score=43.08 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
.+|+.+|.+++..|++++|+..|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345555666666666666666666666655543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.043 Score=57.44 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+..+-.-|+-|++..+|..|+.+|...|+..-. |...|..+|.+.+..|+|..|+.-+.+++..+|.. .-+++.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhh
Confidence 345566789999999999999999999887433 35678888999999999999999999999999998 6678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+.|++.+.++..|..+.+..+.++-
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999888877654
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=2.1 Score=50.92 Aligned_cols=262 Identities=12% Similarity=0.028 Sum_probs=132.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---HcCCHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKAR 217 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~---~~g~~~~A~ 217 (1088)
.|.-++=+..++.-+.+++.+......+..++...|++.+-...-..+..+.|.+ +.+|.....-.. ..+....+.
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcchhHHH
Confidence 3344444555555555566666666666666666666666555555555555555 344433332222 124445555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001392 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1088)
..|++++. +-+++..|...+......++ .+...+++.....+|.+++..
T Consensus 171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~------------------------------~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 171 ELFEKALG-DYNSVPIWEEVVNYLVGFGN------------------------------VAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHhccc------------------------------cccccccchhhhHHHHHHHhh
Confidence 55555552 33444444444444443332 112234445555555555543
Q ss_pred cCCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh----hHhhHH---HHHHHcCCHHHHHHH--
Q 001392 298 TNHGPT----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF----PYYGLG---QVQLKLGDFRSALTN-- 364 (1088)
Q Consensus 298 ~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~la---~~~~~~g~~~~A~~~-- 364 (1088)
....-. ....+..+-..|...-..++-+.++...+.. |.... .+.... .......+++.|...
T Consensus 220 ~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~ 295 (881)
T KOG0128|consen 220 LGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLA 295 (881)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHH
Confidence 222111 1122333333344334445556666555531 11111 011111 111123344444443
Q ss_pred -----HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 001392 365 -----FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTART 437 (1088)
Q Consensus 365 -----~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~--~~~~~~~A~~~~~~a~~ 437 (1088)
++..+...|.....|..+.......|....-...+++++.-.+.+...|+..+... ..+-...+...+.++++
T Consensus 296 ~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 296 KILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc
Confidence 33344444444556667777777888888888889999888888888998888776 44444445555554444
Q ss_pred H
Q 001392 438 L 438 (1088)
Q Consensus 438 ~ 438 (1088)
.
T Consensus 376 ~ 376 (881)
T KOG0128|consen 376 S 376 (881)
T ss_pred C
Confidence 3
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=2.1 Score=50.87 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHH
Q 001392 655 THLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~-p~~~~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 732 (1088)
..+..|..+|....... -.....+...|.+.+ .+++.+.++.+.+.+.....+ .....|+....+-...|+...
T Consensus 440 ~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~ 515 (881)
T KOG0128|consen 440 AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPS 515 (881)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchh
Confidence 66778888887766642 122334555566665 467899999999888775431 223378888888888899999
Q ss_pred HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHH
Q 001392 733 AMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKS 772 (1088)
Q Consensus 733 Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~ 772 (1088)
|..++..|+..-..+.+ -.++...-+.-...|.++.....
T Consensus 516 ~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 516 ARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 99999999886444443 34444444555555666655443
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.3 Score=49.71 Aligned_cols=146 Identities=11% Similarity=0.002 Sum_probs=67.2
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-cCC-----hHHHHHHHHHHHHHCCCChhHHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RNN-----LQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~-----~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
+..+|...--+....+.++.-+.+...+++.+--+-.+|...-.+... .|- .+.-+.+....+.+.|++..+|.
T Consensus 146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWn 225 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWN 225 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 344444444444444555555555555555444333444332222111 111 22234555666666777777777
Q ss_pred hhhhhhhc-cc--chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH-hcCCC
Q 001392 598 MLGDLELK-ND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHTS 673 (1088)
Q Consensus 598 ~l~~~~~~-~g--~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~ 673 (1088)
.|.-++.. .| ....-.......+...+...++.+.-+..+ |...+...+.+.+. -..+|..+|+.+- +.+|-
T Consensus 226 YL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~~---~a~~a~~ly~~La~~~Dpi 301 (318)
T KOG0530|consen 226 YLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAEE---LARKAVKLYEDLAIKVDPI 301 (318)
T ss_pred HHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccchH---HHHHHHHHHHHHhhccCcH
Confidence 66666553 33 122233333333323344456666666666 52222222211111 1223777776655 56664
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.11 Score=57.38 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
+.-+.+|++|++.+|.+ ..+++.+-.+..+....+....-|++++..+|++...|..........-..-.+......|.
T Consensus 48 E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45677888888888877 66677777777777788888888888888888888777665544333211111455555555
Q ss_pred HHHH
Q 001392 259 RAFE 262 (1088)
Q Consensus 259 ~al~ 262 (1088)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.9 Score=49.82 Aligned_cols=267 Identities=15% Similarity=0.097 Sum_probs=146.5
Q ss_pred EEEeCCCCCCChHHHHHHHH--------hccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHH
Q 001392 15 VRVALDQLPRDASDILDILK--------AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL 86 (1088)
Q Consensus 15 v~i~~~~lp~~~~~l~~~L~--------~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~ 86 (1088)
|.+-+..|. |+..|++.+. +..+.+..|-.+|..-...-.++-|...|-+.-+ |++. .+.
T Consensus 660 i~~~ikslr-D~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d------Y~Gi-----k~v 727 (1189)
T KOG2041|consen 660 IEVMIKSLR-DVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD------YAGI-----KLV 727 (1189)
T ss_pred EEEEehhhh-hHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc------ccch-----hHH
Confidence 333334444 4555554443 2345677999999887777777777777666422 3332 233
Q ss_pred HHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 001392 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPA 164 (1088)
Q Consensus 87 ~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a 164 (1088)
-.|+.++...-+.. ...---|.|++|.+.|-.+.+.| ....++...|+|-.-.++++.--.-+ ..-..+
T Consensus 728 krl~~i~s~~~q~a-ei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A 798 (1189)
T KOG2041|consen 728 KRLRTIHSKEQQRA-EISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDA 798 (1189)
T ss_pred HHhhhhhhHHHHhH-hHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHH
Confidence 33444433221110 00112356678888887665443 12344566777766665554321111 112467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+..+|..+..+..+.+|.++|.+.- -.-++..|++++..|++- +.....-|++...+-.+|.++...
T Consensus 799 ~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 799 FRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhh
Confidence 8888888888888999888887642 123466788888777653 334445677777777888888887
Q ss_pred chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001392 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1088)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1088)
|. -++|++.|-+. ..|... .......+++.+|..+..+.. -|.........+.-+...++.-+|
T Consensus 866 GM---C~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~ea 929 (1189)
T KOG2041|consen 866 GM---CDQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEA 929 (1189)
T ss_pred ch---HHHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHH
Confidence 77 67777766542 122211 122344455666666555432 111112222223334455566666
Q ss_pred HHHHHHH
Q 001392 325 GLYYMAS 331 (1088)
Q Consensus 325 ~~~~~~a 331 (1088)
++.++++
T Consensus 930 Ie~~Rka 936 (1189)
T KOG2041|consen 930 IEKDRKA 936 (1189)
T ss_pred HHHhhhc
Confidence 6665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=54.43 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HH-
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LA- 238 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la- 238 (1088)
....-+..+.-....|++.+|...|..++...|.+ ..+.+.++.||...|+.+.|...+...-..... ..+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHH
Confidence 44566777788899999999999999999999999 788999999999999999999888763222111 11222 11
Q ss_pred -HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 001392 239 -VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1088)
Q Consensus 239 -~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 317 (1088)
.++..... .. -+..+.+.+..+|++..+.+.++..+...|+.+.|...+-.++.... ...+......+..++..
T Consensus 210 i~ll~qaa~---~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAA---TP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhc---CC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCcHHHHHHHHHHHh
Confidence 22222211 11 12346667778999999999999999999999888888777775421 12223444444444444
Q ss_pred cC
Q 001392 318 KG 319 (1088)
Q Consensus 318 ~g 319 (1088)
.|
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 44
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.6 Score=48.13 Aligned_cols=120 Identities=12% Similarity=0.009 Sum_probs=62.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
+..|+.-.|-.-+..++...|..+......+.+....|+ |+.+...+..+-..-.....+...+....+..|.+..|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~---ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY---YEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh---HHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344555555555555666666666555555555555555 55555555444333333333444444555555666666
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
..+...++... -..+++...-+-.....|-++++..++++.+.
T Consensus 377 ~s~a~~~l~~e---ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 377 LSTAEMMLSNE---IEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHhccc---cCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 66555555321 22223333333444445556666666666554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.26 Score=54.04 Aligned_cols=172 Identities=19% Similarity=0.122 Sum_probs=119.4
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc----ccc
Q 001392 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 608 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~----~g~ 608 (1088)
..+.+..|...+..+-.. ....+...++.++... .+..+|..+|..+ ....++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccC
Confidence 446777777777776552 2236777777777654 4678899999844 445678888999999877 448
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhc
Q 001392 609 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1088)
Q Consensus 609 ~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~ 688 (1088)
..+|..+|.++...+...-..+...++.+ |.... .. ..-......|+..|.++.... ++.+...+|.+|..-
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QA----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hh----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999988654224446677777 65541 00 000134457888888887766 667777888777653
Q ss_pred ----CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHcc
Q 001392 689 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (1088)
Q Consensus 689 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 728 (1088)
.++.+|..+|.++.+.. + +..+++++ +++..|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 37788888888888865 3 67777888 666656
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=2.1 Score=53.55 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=82.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHhcCCCCCchhhHh
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPYY 346 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1088)
.-.++...+.|+.|+..|.+.....+......++.+..|.....+ | .+.+|+.-|.+.. ..+..+.-|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 556 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEYL 556 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHHH
Confidence 345677778889999999988877766666677888888776543 2 4778888887765 5677777799
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1088)
+.|.+|...|++++-+++|.-+++.+|.+|..-..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 99999999999999999999999999988754433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.04 Score=49.82 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHcc---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhH
Q 001392 713 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g---~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
.....++++|++.... +..+.|.+++..++..+....-..+|+|+..+++.|+|+.++++....++..|+|..+.--
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5678899999998764 5678899999999742223337889999999999999999999999999999999876544
Q ss_pred HHHHHHHHHH
Q 001392 790 AGVAMQKFSA 799 (1088)
Q Consensus 790 la~~~~~~~~ 799 (1088)
--.+..++..
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 4444444433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.15 Score=57.02 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=110.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 001392 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 169 (1088)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~la 169 (1088)
..++.+|.+..+++.++.++..+|++..|..++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999998888887531 11 12 24567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 001392 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1088)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1088)
..+.++|-+..|+++++-++.++|. ++-.+++.+-....+.++++--+..++........ -+...+..+..++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 8888999999999999999999998 77777888888888889998888877766552111 12344555555555
Q ss_pred hchH------------HhHHHHHHHHHHHHHhCCCCH
Q 001392 244 ANEA------------AGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 244 ~~~~------------~~~~~Al~~~~~al~~~p~~~ 268 (1088)
.++. ...+.|-..+.+|+...|.-.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5541 113677888888888776443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.2 Score=48.15 Aligned_cols=125 Identities=21% Similarity=0.198 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
...|......|+...++..+.+++.....+.-..... ..-.......+... ...++..++..+..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~ 74 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL------YLDALERLAEALLE 74 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 3445666778888999999999887553221111000 01111112222222 34567778888999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CCCCCH
Q 001392 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPI 448 (1088)
Q Consensus 389 ~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~ 448 (1088)
.|+++.|+..+.+++..+|.+..++..+..++ ..|+...|+..|.++...+... +..+.+
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 99999999999999999999999999999999 9999999999999998887753 444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.095 Score=50.49 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 224 (1088)
++..++..+...|++..|+..+++++..+|-+ ..++..+..+|...|+...|+..|.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34445555556666666666666666666666 5556666666666666666666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0029 Score=66.32 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
.+.-.+..|.++.|+..|..++.++|.+...+..++.+++.+++...|+.-|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556677888889999988888888888888888888888888889999998888888888 55567788888888888
Q ss_pred HHHHHHHHHHHhhCC
Q 001392 214 GKARQAFQRALQLDP 228 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p 228 (1088)
.+|...|..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 888888888888764
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.6 Score=47.53 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=76.6
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh--h
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILFKYQ------------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP--N 594 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--~ 594 (1088)
..+|.+|...|.+..-.++++++-..+. .....|..-..+|..+.+...-..+|.+++.+...-| .
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3577788888888777777776654322 1245666667788888888888888999988764333 2
Q ss_pred ----HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCC------hHHHHHhhhHHHHHH
Q 001392 595 ----ALSMLGDLELKNDDWVKAKETFRAASDATDGKD------SYATLSLGNWNYFAA 642 (1088)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d------~~a~~~lg~~~y~~~ 642 (1088)
+.-.-|.++++.|+|++|-..|-.+.+.++... ..-++-|+++ +...
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANM-LmkS 285 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANM-LMKS 285 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHH-HHHc
Confidence 233456788999999999999999988765422 2234455555 4444
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.96 Score=49.49 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 178 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~ 178 (1088)
..++..|...+..+... .++...+.++.+|... .+..+|...|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 45666788888877652 3346677777777654 35788999998543 45578888888888877 4589
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1088)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++-... ++.+.+.+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 999999999988754431234667777776642 2336888888877665 777888888776553 323458
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
.+|+.+|.++-.... ...++.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 888888888887766 66666666 555555
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.041 Score=48.37 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCC
Q 001392 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1088)
Q Consensus 46 la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 125 (1088)
.|..|+.+|+.-.|+++++..+..-... . ....++..-|.++..++....+...|...+--|+.+|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5789999999999999999976432110 0 112456666777777777666667777788888888888888888
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1088)
..+..++.+|.-+-..--|++++.-.++++..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888887777667778888777777764
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=4.6 Score=47.40 Aligned_cols=252 Identities=11% Similarity=-0.008 Sum_probs=124.3
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHcCChHH-HHHHHHHHHHHCCCChh--HHHhh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-YLRLAAIAKARNNLQL-SIELVNEALKVNGKYPN--ALSML 599 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~-A~~~l~~al~~~p~~~~--~~~~l 599 (1088)
..-+++.+|.++...|.- ...++...++...+.+.. -..||.-+..+|--.+ -.+.++..+..+..-.. +-..+
T Consensus 396 EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred ccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 345778888888777764 778887777755433221 1233333444553322 22333343333322111 33344
Q ss_pred hhhhhcccchHHHHH-HHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC-CC-CHH
Q 001392 600 GDLELKNDDWVKAKE-TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS-NLY 676 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~-~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~-~~~ 676 (1088)
|.+.+.... .+|+. .+.-+.+.... ...--+.+|-. +... |+.+.|-.+.++++.-. |- -..
T Consensus 474 Gl~mlGt~~-~eaiedm~~Ya~ETQHe-ki~RGl~vGia-L~~y------------grqe~Ad~lI~el~~dkdpilR~~ 538 (929)
T KOG2062|consen 474 GLLMLGTAN-QEAIEDMLTYAQETQHE-KIIRGLAVGIA-LVVY------------GRQEDADPLIKELLRDKDPILRYG 538 (929)
T ss_pred hhHhhCcCc-HHHHHHHHHHhhhhhHH-HHHHHHHHhHH-HHHh------------hhhhhhHHHHHHHhcCCchhhhhh
Confidence 544443333 23333 22222111111 11111223333 3333 67778888888877643 21 112
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
-.+.++..|+-.|+...-..++.-++. +++ ++..-.-.+|..+.-..+++.-....+-..+.|...-...+-..|
T Consensus 539 Gm~t~alAy~GTgnnkair~lLh~aVs-D~n----DDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 539 GMYTLALAYVGTGNNKAIRRLLHVAVS-DVN----DDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred hHHHHHHHHhccCchhhHHHhhccccc-ccc----hHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHH
Confidence 345667778878877655444444333 221 233333333333333456666666655444432111113344567
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCC---hhHHhHHHHHHHHHHH
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQKFSA 799 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~nla~~~~~~~~ 799 (1088)
|.+|.-.|. .+|+..++-+.. +|.+ ..+...+|+++-++..
T Consensus 614 GIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 614 GIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhccc
Confidence 777777776 678888887766 6654 3455666666544433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.59 Score=51.63 Aligned_cols=142 Identities=15% Similarity=0.051 Sum_probs=108.7
Q ss_pred CCCCchhhHhhHHHHHHHcC------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 337 KPHEFIFPYYGLGQVQLKLG------------DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1088)
Q Consensus 337 ~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~ 404 (1088)
.+|..+.+|..++...-..- -.+.-+.+|+++++.+|++...+..+..+..+....+.....+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555555555544433322 145667899999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH-h---cCCHHHHHHHHHHHHHHHHhcCCCC-------------CHHHHHHHHHHHHHcCCHHHH
Q 001392 405 IDPRDAQAFIDLGELL-I---SSDTGAALDAFKTARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESA 467 (1088)
Q Consensus 405 ~~p~~~~~~~~la~l~-~---~~~~~~A~~~~~~a~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A 467 (1088)
.+|+++..|....... . .-.+......|.+++..+....... -..++..+.......|..+.|
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 9999999998877765 2 2357888899998888876643221 135566677788899999999
Q ss_pred HHHHHHHHhcc
Q 001392 468 HQSFKDALGDG 478 (1088)
Q Consensus 468 ~~~l~~al~~~ 478 (1088)
+..++-.++.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 99999999853
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.54 Score=47.83 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHH-hcCC
Q 001392 356 GDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKID-----PRD-AQAFIDLGELL-ISSD 424 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~k~l~~~-----p~~-~~~~~~la~l~-~~~~ 424 (1088)
..+++|+..|++++++.+.-. .++..+..++++++++++-...|.+++..- .+. ......+-... ...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 467778888888887766543 466677778888888888887777766431 111 11222222222 3444
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhh
Q 001392 425 TGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1088)
..--..+|+..+..+..... .........+|.+|+..|.|..-..++++....+....--
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe------------------- 181 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE------------------- 181 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-------------------
Confidence 44445566666555554321 1122344568999999999999888888876643211000
Q ss_pred hhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc--HHHH----HHHHHHHHHcCChHH
Q 001392 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDAY----LRLAAIAKARNNLQL 577 (1088)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~----~~la~~~~~~g~~~~ 577 (1088)
...........++..-..+|..+.+-..-..+|.+++.+.... +... -.=|.++.+.|.+++
T Consensus 182 ------------dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 182 ------------DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEK 249 (440)
T ss_pred ------------hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHH
Confidence 0000112234455556778888888888889999998754332 1111 122455778899999
Q ss_pred HHHHHHHHHHHCCCC-----hh--HHHhhhhhhhccc
Q 001392 578 SIELVNEALKVNGKY-----PN--ALSMLGDLELKND 607 (1088)
Q Consensus 578 A~~~l~~al~~~p~~-----~~--~~~~l~~~~~~~g 607 (1088)
|..-|-++++..... .. -+..+++++++.|
T Consensus 250 AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 250 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 998888888765322 22 3445667766665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.012 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 753 l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
++.+|+++...|++++|+.+|++++..+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444444444444444444444444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0046 Score=64.88 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+|.++.|+..|..++.++|.....+..++.+++..++...|++-|..++.++|+...-+-..+.....+|++.+|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 56677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC
Q 001392 187 RALQVHPSC 195 (1088)
Q Consensus 187 ~al~~~p~~ 195 (1088)
.+.+++-+.
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 999886443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.02 Score=38.60 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
++++++|.++..+|++++|+..|+.++..||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999875
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.9 Score=44.42 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHH
Q 001392 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1088)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1088)
.+-..++.+++..|.|.+|+......+..-. .....+...+++
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vh 168 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehh
Confidence 3445678889999999999998877765210 111345566677
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHH-----HcCCcHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHC---CCChhHHHh
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVN---GKYPNALSM 598 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~--~la~~~~~~g~~~~A~~~l~~al~~~---p~~~~~~~~ 598 (1088)
..-..+|....+..++...+..+-. -+|....+-+ .-|...+.-.+|..|..+|-++++-. ..+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 7777888888888777776665543 2343333222 23445667778889999988887644 223333332
Q ss_pred hhhhhh---cccchHHHHHHHH--HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 001392 599 LGDLEL---KNDDWVKAKETFR--AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (1088)
Q Consensus 599 l~~~~~---~~g~~~~A~~~~~--~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 673 (1088)
+-.+++ ..+..++....+. ..++...+.+..++...+.. |-.. ...+|..|+.-|..-+..+|-
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-~~NR----------sL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-FGNR----------SLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-hCCC----------cHhhHHHHHHHhhHHhccCHH
Confidence 222221 2233333222222 12222333344444444433 2211 116778888888777776654
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=3.4 Score=43.91 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCCchhh--
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFP-- 344 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~-- 344 (1088)
..++.+|+..++|.+|+.+...++. ..+..+...+.+..-..+|+...+..+|...+..+....+. .|....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4578889999999999998888774 23444555677778888899999999998888877642211 1111111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCC---CcH---HHHHHHHHHHHhcCCHHHHHHHH--HHHHHhCCCCHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYP---DNC---ETLKALGHIYVQLGQIEKAQELL--RKAAKIDPRDAQAFIDL 416 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~---~~~~~la~~~~~~g~~~~A~~~~--~k~l~~~p~~~~~~~~l 416 (1088)
=..-|.++....+|..|..+|-.+++-+. +.+ .++..+..|-...+..++.-.++ +.+++....+..+...+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 12335556666899999999998887532 122 34444555555667766655544 34556666778888888
Q ss_pred HHHH---hcCCHHHHHHHHHHHH
Q 001392 417 GELL---ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 417 a~l~---~~~~~~~A~~~~~~a~ 436 (1088)
+..+ ...+|..|+.-|..-+
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHH
Confidence 8888 3446666666665443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.015 Score=40.23 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
+|.+||.+|..+|+|++|+.+|+++|..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777776544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.018 Score=39.20 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
.+++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455666666666666666666666666665
|
... |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.064 Score=40.64 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
..+++||.++++.|+|.+|+++.+.++++.|+|..+.--...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3578999999999999999999999999999998765444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.61 E-value=7.2 Score=46.66 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=133.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1088)
..+++.+..|.-|+.+...-- ........+....|..++..|++++|...|-+.+..+ .|..+. .-+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi------~kfLd 409 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEVI------KKFLD 409 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHHH------HHhcC
Confidence 445666677777776665432 1122335677788999999999999999999988532 122221 22233
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHhcCCHHHHHH
Q 001392 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF----IDLGELLISSDTGAALD 430 (1088)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~----~~la~l~~~~~~~~A~~ 430 (1088)
.....+-..+++.+.+..-.+..--..|-.+|.++++.++-.++..+ .+ ..... ..+-.++..+-.++|.-
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~-~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CD-KGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CC-CcceeeeHHHHHHHHHHhChHHHHHH
Confidence 34445555666666665555555666778899999998876555544 33 11111 11111113333333322
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1088)
... +.+. . ...+-.++...|+|++|+.++..+-
T Consensus 485 LA~-------k~~~--h---e~vl~ille~~~ny~eAl~yi~slp----------------------------------- 517 (933)
T KOG2114|consen 485 LAT-------KFKK--H---EWVLDILLEDLHNYEEALRYISSLP----------------------------------- 517 (933)
T ss_pred HHH-------Hhcc--C---HHHHHHHHHHhcCHHHHHHHHhcCC-----------------------------------
Confidence 222 1111 1 1223456677899999999986541
Q ss_pred hccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-cCCc-HH----HHHHHHHHHHHcCChHHHHHHHHH
Q 001392 511 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY-VD----AYLRLAAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~-~~----~~~~la~~~~~~g~~~~A~~~l~~ 584 (1088)
.+.........|..+.. ..+++-..++-+.+.. ++.. .. .-..+-.+..-.+++..-..++..
T Consensus 518 ----------~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~ 586 (933)
T KOG2114|consen 518 ----------ISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLES 586 (933)
T ss_pred ----------HHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHH
Confidence 12233455556666655 3455555555444432 2111 00 001122233445677777777776
Q ss_pred HHHHCCCChh
Q 001392 585 ALKVNGKYPN 594 (1088)
Q Consensus 585 al~~~p~~~~ 594 (1088)
+....|+.++
T Consensus 587 ~~E~s~~s~e 596 (933)
T KOG2114|consen 587 MSEISPDSEE 596 (933)
T ss_pred HHhcCCCchh
Confidence 7777776655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.18 Score=48.00 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..++....+-+..++.+++..++.-+--..|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3456666677777888888888888888888888888888888888888888888888887777776 666777888888
Q ss_pred HcCCHH
Q 001392 209 KLGQLG 214 (1088)
Q Consensus 209 ~~g~~~ 214 (1088)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 887764
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.025 Score=38.50 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 159 (1088)
+|+.+|.+|...|++++|+..|+++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666665555
|
... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=5.6 Score=45.30 Aligned_cols=252 Identities=17% Similarity=0.114 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1088)
....+.+.......|+++..+...+..+...|+.+.|+..++..+. ..........++.+|.++..+.+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555566666777888888888888888888887777777776664 111122234566777778888888888888877
Q ss_pred HHHhcCCCCCchhh-Hhh-HHHHHHH--------cCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 001392 331 SVKEINKPHEFIFP-YYG-LGQVQLK--------LGDFRSALTNFEKVL---EIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1088)
Q Consensus 331 al~~~~~~~~~~~~-~~~-la~~~~~--------~g~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1088)
..+. .+...+ |.. .|.+++. .|+-+.|..+++... ...|.+..+-.. -..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHH
Confidence 7652 122222 222 2233322 223333333333222 222222111000 0111111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHHH--HhcCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 001392 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTLL--KKAGEEVPI--EVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 398 ~~~k~l~~~p~~~~--~~~~la~l~---~~~~~~~A~~~~~~a~~~~--~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~ 468 (1088)
+-.+.- .++..+. .++.++.++ ......+.. ++.... +... ..+. -.+..+|.++..+|+...|.
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~ 469 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAP 469 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 111110 1111221 235555555 222222222 222222 2222 2223 33455799999999999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCC-HHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVL 547 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 547 (1088)
.+|...++.... ........+.++|.+|.++..+|. ..++..+
T Consensus 470 ~~f~i~~~~e~~------------------------------------~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~ 513 (546)
T KOG3783|consen 470 KCFKIQVEKESK------------------------------------RTEDLWAVPFALYELALLYWDLGGGLKEARAL 513 (546)
T ss_pred HHHHHHHHHHHh------------------------------------hccccccccHHHHHHHHHHHhcccChHHHHHH
Confidence 999988863110 001234467899999999999988 8999999
Q ss_pred HHHHHHHcCCc
Q 001392 548 YRLILFKYQDY 558 (1088)
Q Consensus 548 ~~~~l~~~p~~ 558 (1088)
+.++-....+|
T Consensus 514 L~kAr~~~~dY 524 (546)
T KOG3783|consen 514 LLKAREYASDY 524 (546)
T ss_pred HHHHHhhcccc
Confidence 99887766554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.2 Score=50.55 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhc------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 001392 108 EHFILATQYYNKASRI------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------ 157 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~------------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------ 157 (1088)
.-|++|...|.-+... .|.+...++.++.++..+|+.+-|..+..++|-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3466777666666443 4677889999999999999988777777666531
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHcCCHHHHHHHHHHHH-----h
Q 001392 158 ---DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRAL-----Q 225 (1088)
Q Consensus 158 ---~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~ 225 (1088)
.|.|- .+++.....+-+.|-+..|+.+++-+++++|. +|-.+.+.+-....+..+|.--+..++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 12232 34455556677889999999999999999998 655555556666667777777777766652 2
Q ss_pred hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
.-| |...-+.+|.+|+.......-..|...+.+|+...|.
T Consensus 412 ~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 334 3333455666666665544567788888888888874
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.29 Score=43.22 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 168 QACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
+|.-++..|++-+|+++.+.++..++++. +.++...|.++..+. ...+..+....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH----------
Confidence 35556677777777777777777666552 134444555554332 111111122111
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001392 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1088)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1088)
...+++.|.++..+.|..+..++.+|.-+-....|+++..-.++.+.
T Consensus 60 ----Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 60 ----LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred ----HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22344555566666666666666666665555566666666666554
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.97 E-value=5.3 Score=41.37 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhH-
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPY- 345 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~- 345 (1088)
..++.+++..|.|..|+.+....+. ..+..+.....+..-..+|+...+..++...+..+....+ -.|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567889999999999998887764 3345566667788888899999988888887776654221 112222222
Q ss_pred -hhHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHH---HHHHhcCCHHHHHHHHH--HHHH-hCCCCHHHHHH
Q 001392 346 -YGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKALG---HIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFID 415 (1088)
Q Consensus 346 -~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la---~~~~~~g~~~~A~~~~~--k~l~-~~p~~~~~~~~ 415 (1088)
..-|..++...+|..|..+|-.+++-.. .+..+...|- ..-...+..++...++. ..++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2234556667789999999988887542 2333332222 22222344444433332 2222 23445667777
Q ss_pred HHHHH---hcCCHHHHHHHHHHH
Q 001392 416 LGELL---ISSDTGAALDAFKTA 435 (1088)
Q Consensus 416 la~l~---~~~~~~~A~~~~~~a 435 (1088)
.+..+ ...++..|+.-|..-
T Consensus 289 vaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHH
Confidence 77777 334566666655543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=6 Score=45.08 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
...+.+.......|+++...+..+..+...|+.+.|+..+...+...-. ....++.+|.++....+|..|-..+..+.
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555556667888888888888888888888888888777651101 13456778888888888999988888888
Q ss_pred HhCCCChhHHHHHHHHHHH
Q 001392 190 QVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+..+.....+..|.||.
T Consensus 331 desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 331 DESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred hhhhhhHHHHHHHHHHHHh
Confidence 8777664443444455554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.27 Score=50.36 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHHccCHHH-------HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 713 MPDVWINLAHVYFAQGNFAL-------AMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~-------Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
...++..+||+|..+|+... |+..|+.++.....+.. ..+++.+|.++++.|++++|+++|.+++....
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35677888899988888544 45555555544322221 67888999999999999999999999988654
Q ss_pred CC
Q 001392 782 SN 783 (1088)
Q Consensus 782 ~~ 783 (1088)
.+
T Consensus 197 ~s 198 (214)
T PF09986_consen 197 AS 198 (214)
T ss_pred CC
Confidence 43
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1 Score=42.87 Aligned_cols=98 Identities=15% Similarity=0.043 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK-SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1088)
.+..+.+....|+...|...|..+-.....+... -.+...-+.++...|.|++.....+.... ..+|-...+.-.||
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~--d~n~mR~sArEALg 174 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG--DGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC--CCChhHHHHHHHHh
Confidence 3344555555555555555555554333222111 12233334445555555555444433321 13344444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 001392 350 QVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
..-++.|++..|...|..+..
T Consensus 175 lAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccchHHHHHHHHHHHc
Confidence 666666666666666665544
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.81 E-value=6.8 Score=41.81 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=113.6
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCC-ch
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFE----IYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPT-KS 305 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~-~~ 305 (1088)
.+..+|...++ |.+|+......+. ++. .-..+...-...|+...+..+|...+..+....+. +|. .+
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45667777776 8888877665543 232 23345555677888888888888777776644322 221 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh---hHhhHHHHHHHcCCHHHHHHH--HHHHHHhCCCcHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF---PYYGLGQVQLKLGDFRSALTN--FEKVLEIYPDNCETLK 380 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~--~~~~l~~~p~~~~~~~ 380 (1088)
..-..-|..+....+|..|..||-.+.+.+..-...+. ++-.+..+-+..+..++.-.. -..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 33344466777779999999999999985543333333 333344445556666654443 4456666666788888
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 381 ALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
..+.++.+. .+|..|+.-|..-+..+| .+...+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Ly 328 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLY 328 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence 888887654 478888888888776655 3444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.38 Score=45.87 Aligned_cols=69 Identities=16% Similarity=0.015 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
..+..++.-+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....|..+.+--.++.|++..|+..
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 378888888888899999999999999999999999999999999999999999999999999998754
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.27 Score=42.36 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHcCC
Q 001392 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1088)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~ 212 (1088)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+|.. ...++-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345556666666666666666666666666666666666666666544 23344444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.16 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.046 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
.++.+|..+++.|+|.+|..+++.+++..|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777777777777777777777777777666555443
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.2 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=13.7
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
+++-.+++.-|.+.+ |+++...+|
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHhcCH
Confidence 445555566666543 666666554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=4.4 Score=38.82 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRY 208 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~~ 208 (1088)
.+.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+...|+..|..+-.-.|.. ....++.-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3444455677777777777766554433 3455667777777777777777777776655433 1234566666677
Q ss_pred HcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH
Q 001392 209 KLGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
..|-|+.-..-.+-.- ..+|--..+.-.||....+.|+ +..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 7777766554444321 1123334455566666666666 6666666666554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=9.4 Score=43.77 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHH------------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC----------------
Q 001392 538 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 589 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---------------- 589 (1088)
..-|++|...|.-+... +|-+++.++.++.++..+|+.+.|..++.+++-..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777666666553 45668899999999999999999888888776431
Q ss_pred -----CCChh---HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHH
Q 001392 590 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1088)
Q Consensus 590 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1088)
|.+-. +++.....+.+.|-|..|.++.+-++++.|..|+++...+.++ |...+ .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2333444556779999999999999999999999988888888 55441 5666666
Q ss_pred HHHHHH-----HhcCCCCHHHHhhHHHHHHhcCC---chHHHHHHHHHHHHhc
Q 001392 662 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 662 ~~~~~a-----l~~~p~~~~a~~~la~~l~~~g~---~~~A~~~~~~~~~~~p 706 (1088)
++++.. +..-|+..+. ..+|..|..... -..|...+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666554 3344554332 345666665554 5678888999988775
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.27 Score=50.85 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
++|..++|..+|..|+.++|.++.++...|...-..++.-+|-.+|-+++..+|.|..++..+++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34444556666666666666666666666655555555566666666666666665555555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.54 Score=49.84 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=68.8
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
..++-.+|...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..+...|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999998876655554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.48 Score=50.23 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=29.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.+|...++++.|+.+.+.++...|+++.-+.-+|.+|.+.|.+..|+.-++..+...|++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 344444455555555555555555544444445555555555555555555555444444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.11 Score=35.85 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~ 780 (1088)
++..||.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999966543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.66 Score=40.02 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGR 177 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~ 177 (1088)
.+.-+.+.+..+|.+..+.+.+|..++..|++++|+..|-.++..+++. ..+.-.+-.++-..|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3566788889999999999999999999999999999999999988765 4444444444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.1 Score=40.07 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
++......+..++.+++..++..+--+.|+.+..-..-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 44444455558888888888888888888888888888888999999999999998888777666 56667788888888
Q ss_pred CCHH
Q 001392 211 GQLG 214 (1088)
Q Consensus 211 g~~~ 214 (1088)
|+..
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.3 Score=40.51 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 161 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g---~~~~Al~~~~~al~-~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
.....+.+|.++.... +..+.+.+++.+++ -.|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3556777777777664 45677888888886 5666656667788888888889999988888888888888877554
Q ss_pred HHH
Q 001392 237 LAV 239 (1088)
Q Consensus 237 la~ 239 (1088)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=11 Score=39.88 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+.+-...|+..+...-+..-..+++++|.+..++..|+.-.... +.+|...|+++++...... ........
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~y----r~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIY----RQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHH----hhHHHHhh
Confidence 44566677777888888888889999999999998888654443 6777788887776532111 11111111
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
.|...+|. .+ .+......+-..++.+..++|+..+|++.+....+.++. .....++-++...+....-|..
T Consensus 259 ~~~~~da~------~r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQ------LR--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhh------hh--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 00 011122344556788888999999999999888763321 0111223344444444444444
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHH-------------hcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 361 ALTNFEKVLEIY-PDNCETLKALGHIYV-------------QLGQ---IEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 361 A~~~~~~~l~~~-p~~~~~~~~la~~~~-------------~~g~---~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
....+-+.-.+. |.+....+.-+.+-. +.|- -..|++.+.++++.+|.-+..++.+-.
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 333333322221 333333322222111 1111 124666777777777777666655543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=26 Score=42.73 Aligned_cols=213 Identities=10% Similarity=-0.064 Sum_probs=113.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-Hh
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LI 421 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l-~~ 421 (1088)
.++..-....+.+.|...+.+......-+. .++..++.-....+...+|...+..+.....+. ..+-....+ +.
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHH
Confidence 334444566677888888887655443322 234444444444333567777777655332222 222222222 27
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001392 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1088)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1088)
.+++......+..+-.... ......+-+|..+...|+.++|..+|..+..... +...+.
T Consensus 325 ~~dw~~~~~~i~~L~~~~~-----~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~----------------fYG~LA 383 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAK-----EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRG----------------FYPMVA 383 (644)
T ss_pred ccCHHHHHHHHHhcCHhhc-----cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------------cHHHHH
Confidence 7888776666665422211 2467888899998889999999999999855211 111111
Q ss_pred hhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001392 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1088)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1088)
...+..--.+....................+..+...|....|...+..++.. .+......++.+....|.++.++..
T Consensus 384 a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 384 AQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000000000000000000000112344566677778888888777776654 2345566677777777777777665
Q ss_pred HH
Q 001392 582 VN 583 (1088)
Q Consensus 582 l~ 583 (1088)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 54
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.2 Score=45.69 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001392 423 SDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1088)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1088)
..++.|+..|.-|+-...-.+.... +.++..++++|...|+.+....++++|+....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~--------------------- 149 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE--------------------- 149 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH---------------------
Confidence 3455555555555544332222221 56677788888888887666666666665211
Q ss_pred HhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH
Q 001392 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1088)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1088)
............-....+.+.+|.+..+.|++++|..+|.+++..
T Consensus 150 ---------~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 150 ---------EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred ---------HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 000000010112235678888999999999999999999988863
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.3 Score=51.64 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 001392 871 QQNRQRQEAARQAA 884 (1088)
Q Consensus 871 ~~~~~k~e~~r~~~ 884 (1088)
+++|.++|.+|+.+
T Consensus 357 kkererqEqErk~q 370 (1118)
T KOG1029|consen 357 KKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.57 Score=46.49 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
.++..+|.+|...|+++.|.+.|.++.............++.+.++....+++.....+..++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555666666666666665555544433344445555566666666666666655555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.33 Score=50.21 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=49.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.-..+.|+.++|..+|..++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33456677777777777777777777 6667777777777777777777777777777777777766553
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.54 E-value=23 Score=40.47 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=99.1
Q ss_pred CCCChHHHHHHHHhccCCHH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHHH
Q 001392 22 LPRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTY 95 (1088)
Q Consensus 22 lp~~~~~l~~~L~~e~~~~~--~~~~la~~y~~~g~~~~a~~~l~~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~~ 95 (1088)
+.+|...+..+-....-+.. +-+-+...||..|.|++|+...-++-.. +...||-.-.+..+.++.....-.+.
T Consensus 39 Isddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~ 118 (926)
T COG5116 39 ISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYI 118 (926)
T ss_pred hhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhh
Confidence 34444455555555555555 7778889999999999999987776431 11222211122333333333222222
Q ss_pred hchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 001392 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEF 173 (1088)
Q Consensus 96 ~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~ 173 (1088)
-|......... ..+++.+....-.+...-+.+|.... |.. +...+.+++...+. ...++.++....
T Consensus 119 ~~~~d~iD~~l-------~~v~e~i~~kc~~~se~~~~lgIa~e--g~r---ldiie~~l~~~~d~di~~ylL~Lait~v 186 (926)
T COG5116 119 GGDKDIIDRIL-------DFVLEVIGAKCVDDSEIGYLLGIAAE--GLR---LDIIEKYLSDGNDCDIINYLLDLAITLV 186 (926)
T ss_pred CCCcccchHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHH--HHH---HHHHHHHHhCCCcccHHHHHHHHHHHHh
Confidence 22211100111 11222222222222233333333322 111 23344444433222 234555555544
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
....+. -.++...+...|..+..-++.++.|+..+++-..|...+.+..+.+.
T Consensus 187 ~~~~fr--~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 187 EEEGFR--KEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hhHHHH--HHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 443333 24566666777766444477889999999999999999999877543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=23 Score=40.08 Aligned_cols=208 Identities=13% Similarity=-0.025 Sum_probs=126.3
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1088)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l 419 (1088)
-+-..+..+..++.......-....+.+++... .+-.+++.++.+|... ..++-..+++++++.+-++...-..|+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 333445555566666666666677788888764 5677888899999888 55777788888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhh
Q 001392 420 LISSDTGAALDAFKTARTLLKK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498 (1088)
Q Consensus 420 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~ 498 (1088)
|...+...+..+|.+++..+-. .....--++|..+.. +-..+.+.-+....+....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~--------------------- 198 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTK--------------------- 198 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHh---------------------
Confidence 8668888888888888765322 111111123332221 1122333333333332221
Q ss_pred HHHhhhhhhhhhhccCCCCcCCCCcchHH-HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------
Q 001392 499 MLQFKDMQLFHRFENDGNHVELPWNKVTV-LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA------ 571 (1088)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 571 (1088)
.......+ +..+-.-|....++.+|+.++..+++.+..+..+.-.+..-+..
T Consensus 199 ---------------------lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~ 257 (711)
T COG1747 199 ---------------------LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHS 257 (711)
T ss_pred ---------------------hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccch
Confidence 11112222 22333556667788888888888887776665555544444333
Q ss_pred --------------cCChHHHHHHHHHHHHHCCCCh
Q 001392 572 --------------RNNLQLSIELVNEALKVNGKYP 593 (1088)
Q Consensus 572 --------------~g~~~~A~~~l~~al~~~p~~~ 593 (1088)
-.++..++.-|...+..+..+-
T Consensus 258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 4566677777777766665443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.35 E-value=20 Score=39.35 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=66.5
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHH----cCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CC--CCh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQD--YVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG--KYP 593 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p--~~~ 593 (1088)
.+.+|+.+..+|...|+...-..++...+.. +.. -....+.|...|...+.++.|-.+..+..-- .. ...
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~A 247 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWA 247 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHH
Confidence 5578888889999988876666666555542 111 2344556667777778888887777664311 11 122
Q ss_pred hHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 594 NALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
..++.+|.+-.-+++|..|.++|-.++...|.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34556777777777888888888888777765
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.9 Score=36.44 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCC---CC----CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC----CCC----
Q 001392 685 LAEKGQFDVSKDLFTQVQEAASGSV---FV----QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD---- 749 (1088)
Q Consensus 685 l~~~g~~~~A~~~~~~~~~~~p~~~---~~----~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~----~~~---- 749 (1088)
....|.|.+|...++++.+.....+ .. -+.-++-.|+..+..+|+|++++..-..+|..|.. ..+
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 3455777777777777777653110 00 13446677788899999999999999999987743 333
Q ss_pred -HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 750 -AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 750 -~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
..+.+.-+.++...|+.++|++.|+.+-++
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333446677888899999999999887654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.5 Score=41.07 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1088)
.+..++.-+--+-|+.+..-+.-|.+++..|+|.+|+..|+.+....+..+.+.-.++.|++.+|+..
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 77778887777889999999999999999999999999999999888888999999999999888753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.24 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
+++.+|.++...|+++.|+..|..+++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555555666666666666666555555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.2 Score=44.14 Aligned_cols=104 Identities=10% Similarity=0.168 Sum_probs=82.4
Q ss_pred HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH----H
Q 001392 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA----Q 751 (1088)
Q Consensus 676 ~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~----~ 751 (1088)
.++..+|..|.+.|+++.|++.|.++++...++. ...++++++..+.+..|++.....+..++-.......+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5678999999999999999999999988764321 357788999999999999999999999987765554442 3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p 781 (1088)
+..+-|..+...++|..|-+.|-.+..-..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 344567777888999999988876655443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=91.79 E-value=8.2 Score=34.52 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=67.0
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001392 412 AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV-------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1088)
Q Consensus 412 ~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~ 481 (1088)
+|..|+..- ..|-+++|...+.+++......+... +..++..|+..+..+|+|++++..-..++.--.+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344444433 56778888888888887765543221 13556677888889999999888888877621111
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1088)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1088)
..+.... -..-+.+.++.+..+...|+.++|+..|+.+-+
T Consensus 89 GEL~qde--------------------------------GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 89 GELHQDE--------------------------------GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --TTSTH--------------------------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccc--------------------------------chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1110000 011345667788899999999999999987654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.27 Score=32.18 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
.+|+++|.++..+|++..|+..|+.+++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34555666666666666666666655554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.69 E-value=21 Score=38.04 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=65.1
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
...++..+..+|..|.+.|++.+|..+|-.. ++...... +.......| .|.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKG---------------YPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHT---------------SS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhc---------------CCcchhHHHH
Confidence 3458899999999999999999988877432 22222211 222222222 3333343333
Q ss_pred hh-hhhhcccchHHHHHHHHHhhhc----CCC--------CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHH
Q 001392 599 LG-DLELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1088)
Q Consensus 599 l~-~~~~~~g~~~~A~~~~~~al~~----~~~--------~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1088)
.+ .-|+..++...|...+....+. .|. ...+.++....+ ...... +++ ...+..-.+.|.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e--~~~----~~~F~~L~~~Y~ 218 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCE--RDN----LPLFKKLCEKYK 218 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHH--HT-----HHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHh--cCc----HHHHHHHHHHhC
Confidence 33 3356667777777766655543 221 111222222222 121211 111 134555555566
Q ss_pred HHHhcCCCCHHHHhhHHHHHHh
Q 001392 666 RVIVQHTSNLYAANGAGVVLAE 687 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~ 687 (1088)
..|..+|........+|.+|..
T Consensus 219 ~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 219 PSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp H---HHHHTHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHCC
Confidence 6666666666666666666664
|
; PDB: 3LKU_E 2WPV_G. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.68 Score=34.78 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 761 (1088)
+..+|..+.+.|.+.|++++|.++|+++.+. +-.++..++..+..+++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 3567778888888888888888888888765 35677777777666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=15 Score=42.44 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA-------------DRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
-|-.+|...+..=+++-|.+.|.++-.. .....+--..+|.++.-.|+|.+|.++|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3666666666666677777666654211 011112234556666667777777777764
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.85 Score=37.39 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 718 ~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
+.-|.-++.+.+..+|+..+.+++++.+.+++ ..++-+|..+|+..|++.+++.+...
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999999766666 67788999999999999998877544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.16 E-value=27 Score=39.86 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 001392 753 LLYLARTHYE 762 (1088)
Q Consensus 753 l~~La~~~~~ 762 (1088)
+..|+..+..
T Consensus 123 l~~L~~~~~~ 132 (591)
T KOG2412|consen 123 LNKLGLKESA 132 (591)
T ss_pred HHHHHHhhcc
Confidence 3444444443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.98 E-value=27 Score=38.94 Aligned_cols=176 Identities=15% Similarity=0.027 Sum_probs=116.0
Q ss_pred ChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 001392 592 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (1088)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 671 (1088)
+.+....-|..-+-.|+..++.+.+..+....-......++.|.....+.. .+..+|+.+|+.+--.-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 344444555556667888888888876655443333444444433322233 67889999999998888
Q ss_pred CCCH--HHHhhH-HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC
Q 001392 672 TSNL--YAANGA-GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (1088)
Q Consensus 672 p~~~--~a~~~l-a~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~ 748 (1088)
|... .+.... ..+....|+.+++..+-.+....+..|+|..+- +..++..+...++-. -...+..++..+....
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F--~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQF--AQRFVDLVVRLDDEI-RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHH--HHHHHHHHHhccccc-cHHHHHHHHHhcCchh
Confidence 8843 344444 344468899999999999999988776665433 333333333333221 2233666777654444
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 749 ~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
...+|..+++.-.-.|+..-|.-.-.+++.+...
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~ 289 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP 289 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC
Confidence 4788999999999999999999999999998743
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.63 E-value=23 Score=37.66 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCChhHHh
Q 001392 768 DCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 768 ~A~~~l~~al~~~p~~~~~~~ 788 (1088)
.|++.+.++++.+|.-|....
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 588889999999998765443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=51 Score=40.26 Aligned_cols=321 Identities=9% Similarity=-0.018 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
..++.-|...++.|++..+..+....-+.... ..+-+..+..+... .....+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~--------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLY--------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcH--------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 46788899999999999998888875332111 11222221111111 011234445
Q ss_pred hhcCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 121 SRIDMHEPSTWVGKGQLL---LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
+..+|+.|.....+.... ...+++..-+.++ ...|.+.......+..+...|+-.+|.....++....... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 566677776655554433 2345565544422 2347777777778888888999888888777776554333 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHH-----------Hhh-chHHhHHHHHHHHHHHHHhC
Q 001392 198 AIRLGIGLCRYKLGQLGKARQAFQRAL-QLDPENVEALVALAVMD-----------LQA-NEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~-----------~~~-~~~~~~~~Al~~~~~al~~~ 264 (1088)
..+-.+-..+...|.+.... ++.++. .+.-++......+.... ... .+ .... ...+...
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~----~~~~~~~ 235 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTV----ETFARTT 235 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHH----HHHhhcc
Confidence 22232333333333322222 111111 11111111111111110 000 00 0111 1111111
Q ss_pred -CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc
Q 001392 265 -PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1088)
Q Consensus 265 -p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1088)
|... .....++..-+...+.+.|..++........-.+ ....+...+|......+...+|...+..+... ...
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~ 311 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQS 311 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCC
Confidence 1111 1122223333455566777777776533221111 11233344444443433355666666654421 112
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1088)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l 403 (1088)
.........+.+..+++..+...+..+-..........+.+|..+...|+.++|..+|.++.
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22233333445577777777777766544334456777888888777888888888888764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.61 Score=31.70 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001392 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1088)
Q Consensus 38 ~~~~~~~~la~~y~~~g~~~~a~~~l~~a 66 (1088)
++.-.|..+...|++.|++++|.++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45668999999999999999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.04 E-value=44 Score=38.98 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=16.1
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRL 550 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1088)
...+++-.|+.+....++++|.+.|.+
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 345566666666666666666655543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.9 Score=46.15 Aligned_cols=127 Identities=23% Similarity=0.163 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 001392 113 ATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-AL 189 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~--g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-al 189 (1088)
++..+...+.++|.++..++.. ...+...+....+.-.+...+..+|.++.+...++..+...|..-.++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555556666788888775554 66777778888999999999999999999999999988888777666666655 77
Q ss_pred HhCCCChhHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 190 QVHPSCPGAIR------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 190 ~~~p~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
...|.+ .... +.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777877 3322 3357778888888999999999999999886665554444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.81 Score=51.12 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=64.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
.|.-.+..+.+..|+..|.+++...|.....+...|.++++. |+.-.|+.-...+++++|.. ..+++.++.++..+
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el 458 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNEL 458 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHH
Confidence 333344445566777777777777777777777777776665 45556666666777777766 55677777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 001392 211 GQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~ 230 (1088)
+++.+|+.....+....|.+
T Consensus 459 ~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hhHHHhhhhHHHHhhcCchh
Confidence 77777777766666666643
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=42 Score=38.20 Aligned_cols=97 Identities=14% Similarity=0.006 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|-+-..+..+..++.....+.-...++.+++....+- ..++.++.||... ..++-...|++.++.+-++...-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3444444555455544445555555666666654432 3456666776666 445556666666666666666656666
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFE 262 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~ 262 (1088)
..|.. ++ ...+..+|.+++.
T Consensus 140 ~~yEk-ik---~sk~a~~f~Ka~y 159 (711)
T COG1747 140 DKYEK-IK---KSKAAEFFGKALY 159 (711)
T ss_pred HHHHH-hc---hhhHHHHHHHHHH
Confidence 55555 33 4556666666554
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.8 Score=48.99 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 001392 876 RQEAARQAAL 885 (1088)
Q Consensus 876 k~e~~r~~~~ 885 (1088)
|-|++|+.|+
T Consensus 352 reE~ekkere 361 (1118)
T KOG1029|consen 352 REEEEKKERE 361 (1118)
T ss_pred HHHHHHHHHH
Confidence 3344444444
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.50 E-value=28 Score=38.54 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA------------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 177 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~------------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 177 (1088)
..++.+=.+.+..+|....+|..+-.++.. +.-+++-+.+...++..+|++..+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 367777778888889887777665433322 2245667788888999999999999999999988764
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHHH---HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh------ch-
Q 001392 178 -YSDSLEFYKRALQVHPSCPGAIRLGI---GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 246 (1088)
Q Consensus 178 -~~~Al~~~~~al~~~p~~~~~~~~~l---g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 246 (1088)
+..=+.++.++++.+|.+--...+.. +..-.......+=+.+..+++.-++.|..+|.....+.... |+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 68889999999999998832222222 22222222355667788888888999999998877666522 21
Q ss_pred --HHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 247 --AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 247 --~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
..-...-+.....++-.+|.+..+|++
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223556677788888889988887766
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.61 Score=48.54 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
-|+++..|...+.-....|.|.+--..|.+++..+|.|+..|.. -+.-++-.++++.+..+|.++++.+|.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 34555555555555455555555555555555555555555543 3333444455555555555555555544
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.29 E-value=14 Score=42.69 Aligned_cols=128 Identities=17% Similarity=0.063 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 001392 147 ASSAFKIVLEADRDNVPALLGQ--ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-A 223 (1088)
Q Consensus 147 A~~~~~~al~~~p~~~~a~~~l--a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-a 223 (1088)
++..+..-+..+|.++..++.. ...+...+....+.-.+..++..+|.. ...+..++......|..-.+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555566788887765444 666677788889999999999999998 55677888887778777777666655 8
Q ss_pred HhhCCCCHHHHHHH------HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 224 LQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 224 l~~~p~~~~a~~~l------a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
....|.+......+ +......+. ..++...+.++....|.++.+...+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 88889888776655 555555555 67777788888888888877666555543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.18 E-value=2.3 Score=37.13 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=43.0
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 686 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
...|++..|++.+.+..+......... ...+++++|.++...|++++|+..++.++.......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 356777777777777776654322111 23566777777888888888888888888776555553
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.1 Score=53.82 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHhcCCCC
Q 001392 1017 RLAAAGLED 1025 (1088)
Q Consensus 1017 ~~~~~~~~~ 1025 (1088)
.|-..|+.|
T Consensus 602 ~~~r~~~~~ 610 (1021)
T PTZ00266 602 DSMRSGVHD 610 (1021)
T ss_pred hhhhcccch
Confidence 444444433
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.97 Score=47.12 Aligned_cols=89 Identities=10% Similarity=0.163 Sum_probs=73.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001392 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1088)
|.++....|+++..|...+....+.|-|.+--.+|..++..+|.+ ..+|.. -+.-+...++++.++..|.+++..+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 444455678889999998888888899999999999999999999 666655 555677789999999999999999999
Q ss_pred CHHHHHHHHHH
Q 001392 230 NVEALVALAVM 240 (1088)
Q Consensus 230 ~~~a~~~la~~ 240 (1088)
++..|...-.+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99888765543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.77 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
.++.++|.+|..+|++.+|+.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466778888888888888888888877653
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.65 Score=46.37 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=34.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
....++.+.|.++|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555666666666666666655 4455666666666666666666666666666543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=88.12 E-value=40 Score=35.93 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG--QACVEFNRGRYSDSLE 183 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~Al~ 183 (1088)
|..-...|+.+- +.-...-.+|..+...|..++..|++.+|...|-.. +++.+... +-
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll-------------- 128 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLL-------------- 128 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHH--------------
Confidence 444445555555 222222356777788888888888877777666432 11111111 11
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC----------CHHHHHHH--HHHHHhhchH
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALVAL--AVMDLQANEA 247 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~~~l--a~~~~~~~~~ 247 (1088)
+.......|.............|..+++...|...+...++. +|+ ....+..+ -..-+..++.
T Consensus 129 -~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~ 207 (260)
T PF04190_consen 129 -EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL 207 (260)
T ss_dssp -HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H
T ss_pred -HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH
Confidence 111122334442222333445566778888888877666655 332 22222111 1222223333
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
..+..-...|...++.+|.....+..+|..|+...
T Consensus 208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 33444445555555556666666666777666533
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=3.9 Score=51.52 Aligned_cols=173 Identities=21% Similarity=0.208 Sum_probs=123.9
Q ss_pred hhHHHHHHHcCCHHHHHH------HHHHH-HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCH
Q 001392 346 YGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDA 410 (1088)
Q Consensus 346 ~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~--------~p~~~ 410 (1088)
...++.....|.+.+|.+ ++... ..++|.....+..++.++...++.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 445666667777777776 55533 3457888899999999999999999999988877543 25566
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001392 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GE--EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1088)
Q Consensus 411 ~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~ 486 (1088)
..+.+++... ..++...|+..+.++.....-. +. +....+..+++.++...++++.|+.+++.|+..... +..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~--v~g- 1092 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK--VLG- 1092 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh--hcC-
Confidence 7777787666 7778888999888888765432 22 223456688999999999999999999999873210 000
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1088)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1088)
...-.....+..+++++...+++..|....+....
T Consensus 1093 --------------------------------~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1093 --------------------------------PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --------------------------------ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 01122455666778888888888888777666554
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.34 E-value=20 Score=39.46 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1088)
..|+.+..+|-..|+...-...|...+....-.+ .......+.++|-..|+..+. |+.|..+..+.
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh---d~e~qavLiN~LLr~yL~n~l-----------ydqa~~lvsK~ 235 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRH---DEEGQAVLINLLLRNYLHNKL-----------YDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC---cchhHHHHHHHHHHHHhhhHH-----------HHHHHHHhhcc
Confidence 3677777788888876666655555433222111 112344556666666655443 34666666665
Q ss_pred hhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 121 SRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 121 ~~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
.--+ ...+..++.+|.+..-+++|..|.++|-+++...|++
T Consensus 236 ~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 236 VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4211 1234556777888888888888888888888888864
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.08 E-value=6.1 Score=32.58 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHH
Q 001392 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1088)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~a 260 (1088)
.+..|.-++...+..+|+..|.++++..++....+..||.+.....+.|.+.+.+.+...-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888888888888888887777777776555544444477766654443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.02 E-value=55 Score=36.39 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=104.9
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHh--CCCChhH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQA-CVEFNRGRYSDSLEFYKRALQV--HPSCPGA 198 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la-~~~~~~g~~~~Al~~~~~al~~--~p~~~~~ 198 (1088)
.-|..+..+..+..-+++--..+.|..+|+..-.... -...++.++. .+-+..| .++...++.. .|+. .
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl--~ 274 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNL--F 274 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCch--H
Confidence 3355555554444444444678889988887654322 2334444333 2233333 5666666654 4654 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHH---------h
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE---------I 263 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~---------~ 263 (1088)
++..+-.|..+-|+++.|+..+.+++. ..|.-.. ++.+.....+.+++ ...+..++..+.. +
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS-yh~iik~f~re~dp--~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS-YHLIIKNFKRESDP--QKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHhcccCCc--hhhhHHHHHHHHHhhccCcccCC
Confidence 678889999999999999988877664 3554333 33333344444431 2344444444432 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCC-chHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPT-KSHS-YYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.|.+...+.....++....+..-|.++..-.-...+- .+. .... |..+-.+.+.....+.-...|..++
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443344444777777666665544321110 111 1112 2223334444555666666666555
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.97 E-value=1.2 Score=44.56 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.....|+.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566777777777777777777777777777777777777777777788877777776
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.3 Score=31.43 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
.++..||.+|...|++.+|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.3 Score=33.22 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=32.6
Q ss_pred hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhH
Q 001392 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 637 (1088)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~ 637 (1088)
..+|..+...+.+.|++++|.++|+++.+.+-.++.+++..+.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777778888888888888888777766677776665544
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.48 E-value=13 Score=40.97 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 168 QACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~--------p~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
-|..++++++|..|..-|..+|.+. |.. ...+.-.+..||.++++.+.|+....+.+.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3455666666666666666665542 111 12234457888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhchHHhHHHHHHH
Q 001392 231 VEALVALAVMDLQANEAAGIRKGMEK 256 (1088)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~ 256 (1088)
..-++..|.+.....+ |.+|-..
T Consensus 262 frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHH
Confidence 8877777777777666 5555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.18 E-value=5 Score=39.96 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=62.7
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh
Q 001392 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYE 762 (1088)
Q Consensus 685 l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--~~~~~l~~La~~~~~ 762 (1088)
+...-.-..|...|-++-... ..+++...+.||..|.+ .+..+|+.+|-.+|...... .++.++..|+.++++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~----~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTP----ELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 344445567777776664432 24678899999988874 78999999999999987443 459999999999999
Q ss_pred hccHHHHH
Q 001392 763 AEQWQDCK 770 (1088)
Q Consensus 763 ~g~~~~A~ 770 (1088)
.|+++.|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999885
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.3 Score=30.04 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHH
Q 001392 747 NTDAQILLYLARTHYEAEQWQDCKKSLLR 775 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g~~~~A~~~l~~ 775 (1088)
.+|..+|..|...|++.|+.++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555555555555555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.00 E-value=14 Score=42.70 Aligned_cols=133 Identities=26% Similarity=0.220 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
.....++..+..+|.++.|+.+-.. ....+ .+.++.|+++.|.+.... .+++..|..||..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----------~~~rF---eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----------PDHRF---ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------------HHHHH---HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----------hHHHh---HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHH
Confidence 4466677777788888888765422 12233 344677888887766533 2467788888988
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001392 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1088)
Q Consensus 386 ~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (1088)
....|+++-|..+|.++- + +..|..+| ..|+.+.-.+....+.. .+ -++..-.+++..|+.
T Consensus 357 AL~~g~~~lAe~c~~k~~-----d---~~~L~lLy~~~g~~~~L~kl~~~a~~----~~------~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK-----D---FSGLLLLYSSTGDREKLSKLAKIAEE----RG------DINIAFQAALLLGDV 418 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH----TT-------HHHHHHHHHHHT-H
T ss_pred HHHcCCHHHHHHHHHhhc-----C---ccccHHHHHHhCCHHHHHHHHHHHHH----cc------CHHHHHHHHHHcCCH
Confidence 888899888888888752 2 33445555 66665443333332221 11 122333456667888
Q ss_pred HHHHHHHHHHH
Q 001392 465 ESAHQSFKDAL 475 (1088)
Q Consensus 465 ~~A~~~l~~al 475 (1088)
++.+.++.+.-
T Consensus 419 ~~cv~lL~~~~ 429 (443)
T PF04053_consen 419 EECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 88877776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.64 E-value=14 Score=40.84 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=17.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Q 001392 755 YLARTHYEAEQWQDCKKSLLRAIH 778 (1088)
Q Consensus 755 ~La~~~~~~g~~~~A~~~l~~al~ 778 (1088)
.-|.+.|+.|+-++|.++|+.+..
T Consensus 272 LQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 272 LQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 347778888888888888776654
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.60 E-value=6.3 Score=49.79 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK----- 333 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 333 (1088)
.|.....+..++.++...|+++.|+.+..++.- .....+.....+.+++...+..++...|+..+.++..
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 444444555555555555555555554444431 1223344555666666666666666666666666554
Q ss_pred hcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~ 405 (1088)
..+..|.......+++.++...+.++.|+.+++.++..+ | .....+..++.++...+++..|+...+....+
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 112455556666667777777777777777777776542 2 23456666777777777777777666655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.43 E-value=31 Score=39.80 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=63.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
-...+..|+++.+....... ..-|.- ..-....+..+.++|.++.|+.+.. + +..++.+ ..++|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeL---Al~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFEL---ALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHH---HHhcCCH
Confidence 34455667777776666421 111221 2334455555666666666665532 1 3334433 3456776
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1088)
+.|...... .+++..|..||...+..|+ ++-|..+|+++-. +..|..+|...|+.+...++...
T Consensus 335 ~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKE-----LDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCC-----CSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHh-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHH
Confidence 666654432 2356677777777777777 6666666665421 22344445555555444444444
Q ss_pred HH
Q 001392 294 AL 295 (1088)
Q Consensus 294 ~l 295 (1088)
+.
T Consensus 399 a~ 400 (443)
T PF04053_consen 399 AE 400 (443)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.66 E-value=5 Score=41.94 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1088)
+.+..|..+..+.+.++|.++.-+-.+|.+|.+.|.+.-|+..+...+...|+.+.+-...+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334467777777777777777777777777777777777777777777777777666555544
|
|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=84.64 E-value=8.4 Score=42.76 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=6.0
Q ss_pred hhhhhhHHHhcCC
Q 001392 1011 EENANDRLAAAGL 1023 (1088)
Q Consensus 1011 ~~~~~~~~~~~~~ 1023 (1088)
++..-.+|-+-|-
T Consensus 511 ~sv~~~~lcaidq 523 (708)
T KOG3654|consen 511 ESVHSGLLCAIDQ 523 (708)
T ss_pred Hhhhhhhhccccc
Confidence 3344455544443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.59 E-value=6.3 Score=34.38 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 138 LLAKGEVEQASSAFKIVLEADR----DN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p----~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
.+..|+|..|++.+.+.+.... .. ..+++.+|.+....|++++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455666666555555543321 11 2345555666666666666666666665543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.14 E-value=3.4 Score=46.48 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
......|+..|.+++...|.....+..++.++++. |+.-.|+.-+..++.++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34556899999999999999999999999988876 566778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001392 184 FYKRALQVHPSC 195 (1088)
Q Consensus 184 ~~~~al~~~p~~ 195 (1088)
....+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.91 E-value=8.4 Score=38.42 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001392 393 EKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 393 ~~A~~~~~k~l~~~-p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
+.|...|-++-... -+++...+.||..|...+..+++..+-+++.+... +...+++++..|+.++...|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44554444433221 23566666666666666666677766666666544 23455777777777777777777664
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.73 E-value=1e+02 Score=36.68 Aligned_cols=20 Identities=0% Similarity=0.145 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCCCHHHHhhH
Q 001392 662 ELYTRVIVQHTSNLYAANGA 681 (1088)
Q Consensus 662 ~~~~~al~~~p~~~~a~~~l 681 (1088)
.-|+++.+.+|.+...+...
T Consensus 763 aEFDqiMksDPe~m~~lv~k 782 (1259)
T KOG0163|consen 763 AEFDQIMKSDPETMLELVAK 782 (1259)
T ss_pred HHHHHHHhcCHHHHHHHHHH
Confidence 34788888898876555433
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.62 E-value=3.4 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 001392 131 WVGKGQLLLAKGEVEQASSA 150 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~ 150 (1088)
|+.+|..+..+|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=83.29 E-value=5.3 Score=43.76 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=22.0
Q ss_pred CHHHHHHH----HHHHHHcCCHHHHHHHHHhcCCC
Q 001392 39 PLDLWLII----AREYFKQGKVEQFRQILEEGSSP 69 (1088)
Q Consensus 39 ~~~~~~~l----a~~y~~~g~~~~a~~~l~~a~~~ 69 (1088)
..+-|+.. |..+|++|+|..|.--|..+++.
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLel 205 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALEL 205 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34456555 56899999998888777776654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.21 E-value=1 Score=53.33 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhC
Q 001392 821 NAVRVFSHLSAA 832 (1088)
Q Consensus 821 ~A~~~f~~l~~~ 832 (1088)
+|+.-|.++...
T Consensus 1258 ~aIh~FD~ft~~ 1269 (1516)
T KOG1832|consen 1258 EAIHRFDQFTDY 1269 (1516)
T ss_pred HHHhhhhhheec
Confidence 566666666644
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=83.07 E-value=57 Score=34.43 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccH
Q 001392 692 DVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQW 766 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~ 766 (1088)
...+.++.++.+......-. -...+...+|.-|+..|++++|+.+|+.+...|....- ..++..|..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 34455666666555321111 13446678899999999999999999999887754333 66777888999999999
Q ss_pred HHHHHHHHHHH
Q 001392 767 QDCKKSLLRAI 777 (1088)
Q Consensus 767 ~~A~~~l~~al 777 (1088)
+..+.+.-+++
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 98887765543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.04 E-value=3.8 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH--HHHHhCC
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYK--RALQVHP 193 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~--~al~~~p 193 (1088)
.++++|..++.+|+|++|+.+|+ -+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 45555666666666666666632 4444444
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.87 E-value=23 Score=37.67 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
++..++..+...|+++.+...++..+..+|-+-.+|..+...|+..|+...|+..|.++-..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777776553
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.80 E-value=2.5 Score=29.53 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 715 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
++|..||.+-+..++|.+|+.-|++|+..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.8 Score=27.26 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMY 737 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~ 737 (1088)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.15 E-value=22 Score=37.81 Aligned_cols=65 Identities=23% Similarity=0.409 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
...++..++..+...|+++.++..+++.+..+|-+-..|..+...| ..|+...|+..|.++....
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3456677777777778888888888888888888877777777777 7788888888887777643
|
|
| >PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences | Back alignment and domain information |
|---|
Probab=81.32 E-value=11 Score=37.35 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhccC
Q 001392 917 EEHFQRVKEQWRSST 931 (1088)
Q Consensus 917 ~~~~~~~~~~~~~~~ 931 (1088)
|++.++..+.|-+..
T Consensus 112 EEKRrqkie~we~~q 126 (190)
T PF06936_consen 112 EEKRRQKIEMWESMQ 126 (190)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445556675543
|
SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1088 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-12 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 3e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 2e-10 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-09 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-06 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-05 | ||
| 3zgq_A | 482 | Crystal Structure Of Human Interferon-induced Prote | 6e-05 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 3e-04 | ||
| 4hoq_A | 482 | Crystal Structure Of Full-length Human Ifit5 Length | 4e-04 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 4e-04 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 5e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 6e-04 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 6e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 9e-43
Identities = 65/367 (17%), Positives = 141/367 (38%), Gaps = 22/367 (5%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A ++ + R + + + +++++ + ++ + A V
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
RG+ +++E Y+ AL++ P + + G + A QA+ ALQ +P+
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDG-YINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 233 ALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
L L E A +A E P A+A + L F G+ +L
Sbjct: 137 VRSDLGNLLKALGRLEEA-----KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E A+ + P +Y NL +++A Y+ ++ ++ P+ + L
Sbjct: 192 FEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS-PN-HAVVHGNLAC 245
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V + G A+ + + +E+ P + L + + G + +A++ A ++ P A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 468
+ +L + + A L +KA E P +N+ + ++G+ + A
Sbjct: 306 DSLNNLANIK------REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 469 QSFKDAL 475
+K+A+
Sbjct: 360 MHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-41
Identities = 73/349 (20%), Positives = 138/349 (39%), Gaps = 22/349 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G+ E A + + DN LL + + F R S F A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
+P A +G + GQL +A + ++ AL+L P+ ++ + LA + E A
Sbjct: 62 QNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
++ A + P + L N G+ + A+ P + ++
Sbjct: 121 -----VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAW 172
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
NL ++++G+ A ++ +V ++ P F+ Y LG V + F A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV-TLD-P-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
L + P++ L +Y + G I+ A + R+A ++ P A+ +L L
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL------KE 283
Query: 429 LDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ A A P + LNN+ I E+G E A + ++ AL
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 75/404 (18%), Positives = 150/404 (37%), Gaps = 48/404 (11%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALG-------- 90
+ +A ++ G E Q+ + V +I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 91 ------------VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y+ LG + ++ + +E A ++Y A R+ ++ L
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+A G++E A A+ L+ + D + GR ++ Y +A++ P+ A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
+G G++ A F++A+ LDP ++A + L + + + A +
Sbjct: 172 -WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-----VAA 225
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
RA + P A+ LA ++ G L A+ P +Y NLA +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALK 282
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
KG +A Y ++ + L ++ + G+ A+ + K LE++P+
Sbjct: 283 EKGSVAEAEDCYNTAL-RLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L + Q G++++A ++A +I P A A+ ++G L
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-35
Identities = 72/457 (15%), Positives = 148/457 (32%), Gaps = 95/457 (20%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
+ +P EA L + + + A +E + A + P LA G
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEA-----IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
Q +AL P +L + G E+A Y+ +++ +P F
Sbjct: 116 DMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP-NFA 169
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
+ P A N+ +++E+G
Sbjct: 230 LSLSPNHAVV--------------------------------------HGNLACVYYEQG 251
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A +++ A+ E + +
Sbjct: 252 LIDLAIDTYRRAI------------------------------------ELQPHFPD--- 272
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
NLA L++ A Y L + D+ LA I + + N++ ++ L
Sbjct: 273 ----AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+AL+V ++ A S L + + +A ++ A
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 72/436 (16%), Positives = 143/436 (32%), Gaps = 71/436 (16%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA + GD+E A + M ++ +P + L + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ--EP-DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ P E LG++Y + GQ+++A E R A ++ P +I+L L++ D
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
A+ A+ +A V +++G + G E A + A+
Sbjct: 119 GAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAI----------- 162
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E N NL + + A
Sbjct: 163 -------------------------ETQPNFAV-------AWSNLGCVFNAQGEIWLAIH 190
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ + +++DAY+ L + K ++ AL ++ + L + +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
A +T+R A A +L N AL+ + + +A++ Y
Sbjct: 251 GLIDLAIDTYRRAI-ELQPHFPDAYCNLAN-----ALKEKGS--------VAEAEDCYNT 296
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726
+ ++ + N + E+G + + L+ + E NLA V
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQ 351
Query: 727 QGNFALAMKMYQNCLR 742
QG A+ Y+ +R
Sbjct: 352 QGKLQEALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 7e-31
Identities = 89/489 (18%), Positives = 161/489 (32%), Gaps = 104/489 (21%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+ + Y+ G A + + + +P+N L+ L+ + Q + + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLA 59
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+ P A A + L N + GQ + AL + P Y NLA + + GD
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGD 116
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
E A Y++++ + N P LG + LG A + K +E P+
Sbjct: 117 MEGAVQAYVSAL-QYN-PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440
LG ++ G+I A KA +DP A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--------------------------- 206
Query: 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500
N+G + E F+ A ++ AL
Sbjct: 207 -----------INLGNVLKEARIFDRAVAAYLRAL------------------------- 230
Query: 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560
L N V NLA + + A YR + + D
Sbjct: 231 ------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620
AY LA K + ++ + + N AL++ + ++L+ L +++ + + +A +R A
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 621 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680
+ + A +L + L+ + + L++A Y I + A +
Sbjct: 333 -EVFPEFAAAHSNLAS-----VLQQQGK--------LQEALMHYKEAIRISPTFADAYSN 378
Query: 681 AGVVLAEKG 689
G L E
Sbjct: 379 MGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-30
Identities = 76/454 (16%), Positives = 153/454 (33%), Gaps = 72/454 (15%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + + GDF +A + ++ PDN L L I+ Q +++++ A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+P A+A+ +LG + + A + A P I+ N+ G
Sbjct: 62 QNPLLAEAYSNLGNVY------KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ E A Q++ AL + + +
Sbjct: 116 DMEGAVQAYVSAL------------------------------------QYNPDLYC--- 136
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
V +L LL+ + A Y + ++ A+ L + A+ + L+I
Sbjct: 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A+ ++ + +A LG++ + + +A + A + + +L
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLAC-----V 246
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ ++ A + Y R I A L EKG ++D +
Sbjct: 247 YYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
D NLA++ QGN A+++Y+ L + A LA +
Sbjct: 299 RLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ Q+ AI ++P+ + G +++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-28
Identities = 74/458 (16%), Positives = 150/458 (32%), Gaps = 76/458 (16%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
LA+ + G E+ P + L+ + +++ + ++K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
+ P Y LG V + G + A+ ++ L + PD + L V G +E
Sbjct: 62 Q--NP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVL 451
A + A + +P DLG LL AL + A+ KA E P
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLL------KALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511
+N+G + +GE A F+ A+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV------------------------------------ 196
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
D N ++ NL +L++ A Y L ++ + LA +
Sbjct: 197 TLDPNFLD-------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631
+ + L+I+ A+++ +P+A L + + +A++ + A + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSL 308
Query: 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 691
+L N R + +E+A LY + + A + VL ++G+
Sbjct: 309 NNLAN-----IKREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729
+ + + + D + N+ + +
Sbjct: 356 QEALMHYKEAIRISP-----TFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 59/306 (19%), Positives = 119/306 (38%), Gaps = 45/306 (14%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D ++ +A G +E + L+ + VR + +L ALG
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQ------YNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 93 ----------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQ 136
++ LG + Q E A ++ KA +D + ++ G
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL----AIHHFEKAVTLDPNFLDAYINLGN 211
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196
+L ++A +A+ L ++ ACV + +G +++ Y+RA+++ P P
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
A + + G + +A + AL+L P + ++L LA + E A +
Sbjct: 272 DA-YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-----V 325
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
++A E++P A A + LA+ G+ + A+ ++ PT + +Y N+ +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNT 382
Query: 315 YHSKGD 320
D
Sbjct: 383 LKEMQD 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-38
Identities = 53/408 (12%), Positives = 123/408 (30%), Gaps = 42/408 (10%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILE----------------EGSSPEIDEYYADVRY 80
+ + + Y ++ +++ L ++ E + + Y
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 81 ERIAILNA--LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
+ +A L Y + + E + Y + + K L
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELR-----RAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ + +LE D N+ G + + HP
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
L +G+ + ++ +AR+ F ++ +DP+ A + A ++ A +
Sbjct: 376 -WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA-----ISA 429
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
A ++ + +L G L + +++ A+ L
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAF 486
Query: 317 SKGDYEKAGLYY----MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+K D + A ++ + K + + + LG KL + +A+ + L +
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
++ A+ +Y+ A L ++ I P + A L L
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 4e-36
Identities = 61/468 (13%), Positives = 136/468 (29%), Gaps = 44/468 (9%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
A +L + A K + +L E + DE A+ +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID--MHEPSTWVGKGQLLLAKGE 143
+ G++ T + A + Y +A +D +E + LL A E
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDR----AKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251
Query: 144 VEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + + D + +L + + E Y ++ + L
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL-LC 310
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRA 260
+ + + L++DP N++ +
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-----YLISNDL 365
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYH 316
+ +P A+ + ++ + A + P ++ A S+
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKI-------SEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
+G++++A Y + + + PY LG ++LG+ A + ++ +
Sbjct: 419 IEGEHDQAISAYTTAA-RLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKI-------DPRDAQAFIDLGELLISSDTGAAL 429
L LG + ++ A + A + + A + +LG L
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY------RKL 529
Query: 430 DAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ A L + V I +++ K A ++L
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-33
Identities = 70/541 (12%), Positives = 154/541 (28%), Gaps = 68/541 (12%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACV 171
A K I P+ Q+ G+ +A +R + L V
Sbjct: 103 AAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161
Query: 172 E---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216
+ R ++ + + + ++ G L +A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE--ASMCYLRGQVYTNLSNFDRA 219
Query: 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
++ ++ AL +D + EA L L + + +L L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336
+ + E L+ N S A + + + ++
Sbjct: 280 NKTSHEDEL---RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-- 334
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P+ + Y + G+ +++ +P+ T A+G Y+ + +I +A+
Sbjct: 335 DPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 397 ELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455
K++ +DP+ A+I I + A+ A+ TA L + +G
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLG 448
Query: 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515
+ H + G A++ + +
Sbjct: 449 MQHMQLGNILLANEYLQSSY------------------------------------ALFQ 472
Query: 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575
L V FN + + I+ A +L + + + + L +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635
+I+ +N+ L ++ N + + + L A + A + A+ L
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMASDLLK 591
Query: 636 N 636
Sbjct: 592 R 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 66/541 (12%), Positives = 137/541 (25%), Gaps = 83/541 (15%)
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
+LA + TG + + L S Y A D++ A +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 333 KEINKPHEFIFP-------------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y GQV L +F A +++ L + E
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439
L ++ E L + DA L L ++ + D + A L
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK--TSHEDELRRAEDYL 295
Query: 440 KKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497
+ + ++L F + F L
Sbjct: 296 S-SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL---------------------- 332
Query: 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557
E D +++ V L + + ++ ++ ++ +
Sbjct: 333 --------------EIDPYNLD-------VYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
+L + N + + +++ ++ ++ A + +A +
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431
Query: 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677
A+ L LG + A E +
Sbjct: 432 TAARL-FQGTHLPYLFLGM-----QHMQLGN--------ILLANEYLQSSYALFQYDPLL 477
Query: 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMK 735
N GVV K + + F + + W NL H Y + A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795
L DA + +A + + L ++ ++P+ A++
Sbjct: 538 ALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
Query: 796 K 796
+
Sbjct: 596 E 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 61/578 (10%), Positives = 134/578 (23%), Gaps = 104/578 (17%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +Y + ++ L + + A L G +A+ + + +
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLA--QVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 234 LVALAVMDL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288
+A + A G K ++ + A+ + GQ +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213
Query: 289 QLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ A ++ L ++ D E + + + F+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + D ++ + + + L + + K +
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
IDP + +V E GE
Sbjct: 334 IDPYNL--------------------------------------DVYPLHLASLHESGEK 355
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ D + + W
Sbjct: 356 NKLYLISNDLV------------------------------------DRHPEKAVT-WLA 378
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
V + + + + A + + A++ A +I
Sbjct: 379 VGIYYLCVNKISE-----ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644
A ++ LG ++ + + A E +++ A D LG
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY-ALFQYDPLLLNELGV-----VAF 486
Query: 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704
N+ H + A L + G + +D + D Q
Sbjct: 487 NKSDMQTAIN-HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Query: 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
++ +V +A VY + LA+ L
Sbjct: 546 ST-----NDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 68/538 (12%), Positives = 139/538 (25%), Gaps = 91/538 (16%)
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSY---YNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L++Q + A V + + + LA+ Y GDY +A + N+
Sbjct: 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARA-KCLLTKEDLYNRSS 150
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LG 383
Y +KL D++ AL + D K G
Sbjct: 151 AC---RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 443
+Y L ++A+E ++A +D + +AF L + + K + K
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503
+ + E A
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----------------------------- 298
Query: 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563
+ +L A L + + IL +D Y
Sbjct: 299 --------NGLEKSSD-------LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623
A + N+ + + + +G L + +A+ F +S
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM- 402
Query: 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683
D + A + + + E ++A YT G+
Sbjct: 403 DPQFGPAWIGFAH-----SFAIEGE--------HDQAISAYTTAARLFQGTHLPYLFLGM 449
Query: 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743
+ G ++ + P + L V F + + A+ +QN L
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYD-----PLLLNELGVVAFNKSDMQTAINHFQNALLL 504
Query: 744 FYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
A L + + + + +L + + L+ ++ + +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 5e-22
Identities = 65/455 (14%), Positives = 140/455 (30%), Gaps = 41/455 (9%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-----------EVLNNIG 455
A ++ L+ D AL+ K + + G
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEND 514
++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 208 QVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 574
+ + + L+ L D + + Y + + D L A R+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634
+ + + L+++ + + ++ + K D + + L++
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLAV 379
Query: 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694
G Y+ + + +A+ +++ A G A +G+ D +
Sbjct: 380 G--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 427 ISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLN 479
Query: 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789
L + Q A+ L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 18/302 (5%)
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
V + + + +V+E D + L + ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLG-KARQAFQRALQLDPENVEALVALAV--MDLQA 244
+ ++PS P + +G +G AR+ +A L+ A +A
Sbjct: 82 LVDLYPSNPVS-WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
++ A M A ++ C + + Y+ + T L E+ AL++ P
Sbjct: 141 HDQA-----MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED 192
Query: 305 SHSYYNLARSYHSKGDYEKAGLYY------MASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + G+++ A ++ + ++ ++ LG V KL +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
AL + L + P N T A+G+I+ +G E A + A + D + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 419 LL 420
+
Sbjct: 313 CI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 60/375 (16%), Positives = 109/375 (29%), Gaps = 64/375 (17%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ I + + Q LD+ + +A ++ + ++E D ++A
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVME------KDPFHASCLPV 61
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
I L L + E +K + P +W G L
Sbjct: 62 HIGTLVELN--------------KANE----LFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103
Query: 142 GE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
G E A ++ PA + + ++ Y A Q+ C +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM- 162
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L IGL A + F +AL + PE+ + + V+ Q E + + A
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDA 219
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
E A+ NL
Sbjct: 220 LEKIK----------------------------AIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y +A Y+ + P Y +G + +G+F +A+ F L + D+ ++
Sbjct: 252 YAEALDYHRQ-ALVLI-PQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 381 ALGHIYVQLGQIEKA 395
LGH +A
Sbjct: 309 MLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-28
Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 54/339 (15%)
Query: 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ + + ++ ++N+ ++ A + + + ++ P + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI 63
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL---QANEAAGIRKGMEKMQRAF 261
+L + + + + L P N + A+ L NE A + +A
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA-----RRYLSKAT 118
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A + S+ + ++
Sbjct: 119 TLEKTYGPA-------------------------------------WIAYGHSFAVESEH 141
Query: 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381
++A Y + ++ K P +G + + A F + L I P++ +
Sbjct: 142 DQAMAAYFTAA-QLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA---FKTARTL 438
+G + Q G+ + A++ A + + ++ G + A
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
++A +P + IG IH G FE+A F AL
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 48/349 (13%), Positives = 101/349 (28%), Gaps = 49/349 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+ + + + LA ++ + +LT + P + +
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGT 65
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYP 373
+ V P + ++ +G L +G A K +
Sbjct: 66 LVELNKANELFYLSHKLVD--LYPSNPV-SWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 433
A GH + + ++A AA++ + +G + K
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY------GLTNNSK 176
Query: 434 TARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491
A +A P V++ +GV+ F+ GE+++A + F DAL
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL---------------- 220
Query: 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551
+ +L NL + ++ A +R
Sbjct: 221 ------------------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
L Y + I N + +++ + AL + +++MLG
Sbjct: 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 6e-16
Identities = 41/307 (13%), Positives = 88/307 (28%), Gaps = 34/307 (11%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P + ++ +G G + AR L KA G +
Sbjct: 85 LYPSNPVSWFAVGCYY--LMVGHKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVES 139
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM---LQFKDMQLFHRFENDGNH-V 518
E + A ++ A L + L++ E + +
Sbjct: 140 EHDQAMAAYFTAA-------QLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
Query: 519 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---------FKYQDYVDAYLRLAAIA 569
+ V+ + + Q + A + L + L +
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629
+ +++ +AL + + + S +G + ++ A + F A D++
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTF 305
Query: 630 ATLSLGN 636
+ LG+
Sbjct: 306 SVTMLGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 64/381 (16%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ T + ++ +N + + +L + + +L + DP A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGI 479
+ A + F + L+ +G + G E A + A
Sbjct: 67 --VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKA----- 117
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
T L+ A W
Sbjct: 118 --TTLEKT------YGPA------------------------WI------AYGHSFAVES 139
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
+ A Y + L + NN +L+ ++AL + + P + +
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF---AALRNEKRAPKLEATH 656
G + +N +W A++ F A + + T+ R K+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-------- 251
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
+A + + + +V N + G + + G F+ + D F
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-----DDTFS 306
Query: 717 WINLAHVYFAQGNFALAMKMY 737
L H + A
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 39/371 (10%), Positives = 108/371 (29%), Gaps = 66/371 (17%)
Query: 433 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 490
K + T++ ++ + + ++V+ ++ H+ +F+ ++ +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM--------------- 49
Query: 491 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550
E D H + L L + E L
Sbjct: 50 ---------------------EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHK 81
Query: 551 ILFKYQDYVDAYLRLAAIAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 609
++ Y ++ + + + + +++A + Y A G +
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669
+A + A+ L +G + A+ +++ +
Sbjct: 142 DQAMAAYFTAAQL-MKGCHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALS 187
Query: 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYF 725
+ + + GVV + G++ ++ F ++ + + + NL HV
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785
+A A+ ++ L +A + H +++ A+ L +
Sbjct: 248 KLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 786 LRFDAGVAMQK 796
G ++
Sbjct: 306 SVTMLGHCIEM 316
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 9e-35
Identities = 82/578 (14%), Positives = 164/578 (28%), Gaps = 69/578 (11%)
Query: 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112
Q+ SP + YA L G ++
Sbjct: 4 MNGEPDIAQLKG--LSPSQRQAYAVQ-------LKNRGNHFFTAKNFN-----------E 43
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A +YY A +D +EP + ++ G++E+ LE D+ ALL +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPE 229
+ G ++D++ +I + K + R Q+ P
Sbjct: 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Query: 230 NVEALVAL-----AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + N ++ + A + +AN
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
L+ + + + + K + A + S+ ++
Sbjct: 224 MYHSLLSANTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESI-NLHPTPNS--- 278
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
++P + +I L LL F + + + P EV I ++G
Sbjct: 339 LNPENVYPYIQLACLL------YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+F++A + + A L + + K +V +
Sbjct: 393 DFDTAIKQYDIA------KRLEEVQEKIHVGIGPL--------------IGKATILARQS 432
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
++ + + A L A + LA + + +IEL
Sbjct: 433 SQDPTQLDEEKFNA-------AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 583 NEALKVNGKYPNALSMLGDLEL-KNDDWVKAKETFRAA 619
++ + L E K ++A A
Sbjct: 486 EDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-31
Identities = 70/460 (15%), Positives = 132/460 (28%), Gaps = 55/460 (11%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
+ I+ Y G +E+ + LE I ++ R + +LG +
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLGNFTDAM 113
Query: 93 --YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L E + ++ + Q+L + +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
F LE N Y + ALQ S + L
Sbjct: 174 FDSHLEVSSVN------------TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
A L AL + A +Q + ++P
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT- 275
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ +LA + + A+ P +YY+ + Y DY+ A
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVD---LNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
+ + +N E ++PY L + K G F + F + +P E I
Sbjct: 333 FQKAQ-SLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL----------ISSDTGAALDAFKTART 437
G + A + A +++ + + +G L+ T + F A
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 438 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
LL KA E P + + + + + + A + F+D+
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-30
Identities = 58/391 (14%), Positives = 118/391 (30%), Gaps = 31/391 (7%)
Query: 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG----KI 99
L + ++ + L + + ++E + +L + ++ G +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178
Query: 100 ETKQREKEEHFILATQYYNKASRIDMHEPSTWV--GKGQLLLAKGEVEQASSAFKIVLEA 157
E ++ A + A + L + SA +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217
+ AL F + D+ + ++ +HP+ I L + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL--TLADKENSQEFF 296
Query: 218 QAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ FQ+A+ L+PE M LQ + A E Q+A + P LA
Sbjct: 297 KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA-----KEDFQKAQSLNPENVYPYIQLA 351
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-- 333
+ G+ E PT A +GD++ A Y + +
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 334 -----------EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + QL F +A+ K E+ P + + L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+ +Q+ +I++A EL +A + +
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-25
Identities = 68/484 (14%), Positives = 147/484 (30%), Gaps = 40/484 (8%)
Query: 319 GDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
G + ++ + G +F A+ ++ +E+ P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTAR 436
+ Y+ G +EK E KA +I P ++A + S + A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VL 119
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
+L +L K E+ + T L S +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL--EQIHDTVAASVLYRLILFK 554
S + + + ++ ++ + +A L + + +
Sbjct: 180 VSSVN-TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614
++ A +NNL + L+ E++ ++ N+ L ++ + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297
Query: 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674
F+ A + + G + + AKE + + + N
Sbjct: 298 FFQKAV-DLNPEYPPTYYHRGQ-----MYFILQD--------YKNAKEDFQKAQSLNPEN 343
Query: 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734
+Y +L ++G+F S+ F + + F +P+V A + +G+F A+
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKL-----KFPTLPEVPTFFAEILTDRGDFDTAI 398
Query: 735 KMYQNCLR------KFYYN--------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
K Y R K + T T + E++ K L +A L
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 781 PSNY 784
P +
Sbjct: 459 PRSE 462
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 6e-25
Identities = 68/681 (9%), Positives = 170/681 (24%), Gaps = 164/681 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168
+ + + + +G +A ++ +E D +
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228
+ + G +EF +AL++ P A L LG A L L+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKA-LLRRASANESLGNFTDAMFDLS-VLSLNG 123
Query: 229 ENVEALVALAVMDLQANEAAGIRKGM--EKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
+ A + + +A + + R ++ P ++
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----------- 172
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ S ++ +Y+ A +++ + + +
Sbjct: 173 ------------------IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY-LV 213
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + S L+ + + L G + + AQ LL+++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 466
P + + +K +
Sbjct: 274 PTP---------------------------------------NSYIFLALTLADKENSQE 294
Query: 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526
+ F+ A+ + + +
Sbjct: 295 FFKFFQKAV------------------------------------DLNPEYPP------- 311
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
++ ++ + D A ++ + V Y++LA + + S NE
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
P + ++ D+ A + + A
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK-------------------------- 405
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ E H+ ++ + L + ++ +F+ + L T+ E
Sbjct: 406 RLEEVQEKIHVGIG------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459
Query: 707 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766
+ I LA + A++++++ T + A T EA +
Sbjct: 460 -----RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE--KLQATTFAEAAKI 510
Query: 767 QD---CKKSLLRAIHLAPSNY 784
Q + + L + Y
Sbjct: 511 QKRLRADPIISAKMELTLARY 531
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-33
Identities = 42/373 (11%), Positives = 100/373 (26%), Gaps = 22/373 (5%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ + V A+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 228 PENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P+ V A+ L+ + + + +A + P +A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ + A +T P + + + + + ++ + + + +
Sbjct: 260 RLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQAH-GLT--PQQVVAI 313
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + L + L + + P + + L +++ +L +A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 463
P A G AL+ + +L +A P + + +
Sbjct: 374 TPEQVVAIASNGGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427
Query: 464 FESAHQSFKDALG 476
+ A G
Sbjct: 428 VQRLLPVLCQAHG 440
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-32
Identities = 43/374 (11%), Positives = 100/374 (26%), Gaps = 28/374 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V + + +A + + G A V++
Sbjct: 141 VAIASHDGGKQALETVQA----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
V A+ + L +A + P AI G + L
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQAL 255
Query: 211 GQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268
+ + +A L P+ V A+ + L+ + + + +A + P
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL-----LPVLCQAHGLTPQQV 310
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+A+ + + A +T P + + + + ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388
+ + E + G + L + L + + P+ + +
Sbjct: 368 CQAH-GLT--PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 448
L +++ +L +A + P+ A G AL++ + A +
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGR------PALESIVAQLSRPDPALAALT- 477
Query: 449 EVLNNIGVIHFEKG 462
N+ V G
Sbjct: 478 ---NDHLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-31
Identities = 40/364 (10%), Positives = 94/364 (25%), Gaps = 22/364 (6%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ + A V++ V A+ +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
L +A + P AI + L + +A L PE V A+ +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 237 LAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
L+ + + + +A + P +A+ + + A
Sbjct: 180 NGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+T P + + + + ++ + + + +
Sbjct: 235 HGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQA 288
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
L + L + + P + + G L +++ +L +A + P+ A
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348
Query: 415 DLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 472
AL+ + +L +A P + + + G +
Sbjct: 349 SHDGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
Query: 473 DALG 476
A G
Sbjct: 403 QAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 7e-31
Identities = 55/512 (10%), Positives = 132/512 (25%), Gaps = 65/512 (12%)
Query: 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171
+A + ++D + +G + + ++ L + V A+
Sbjct: 22 VAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG 81
Query: 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231
+ L +A + P AI + L + + +A L PE V
Sbjct: 82 KQALETVQRLLPVLCQAHGLTPQQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 232 EALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
A+ + L+ +A + + +A + P +A+ +
Sbjct: 141 VAIASHDGGKQALETVQAL-----LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A +T P + + + + ++ + + + G
Sbjct: 196 VLCQAHGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNG 249
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L + L + + P + + L +++ +L +A + P+
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Query: 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 467
A G AL+ + +L +A P + + + +
Sbjct: 310 VVAIASNGGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527
A V +
Sbjct: 364 LPVLCQAH------------------------------------GLTPEQVVAIASNGGG 387
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
L + + A L + V A +A +Q + ++ +A
Sbjct: 388 KQALETVQRLLPVLCQAHGLT-------PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440
Query: 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+ + A++ G + V A
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-24
Identities = 52/534 (9%), Positives = 120/534 (22%), Gaps = 87/534 (16%)
Query: 211 GQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
L A + LQLD + + AV + A A + P
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA-------PLNLTPE 70
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+A+ + + A +T P + + + + ++
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLP 127
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
+ E + + L ++ L + + P+ + + G
Sbjct: 128 VL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 446
L +++ +L +A + P+ A G AL+ + +L +A
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK------QALETVQRLLPVLCQAHGLT 238
Query: 447 P--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504
P + + + G + A
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAH----------------------------- 269
Query: 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564
V + L + + A L V A
Sbjct: 270 -------GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIAS 315
Query: 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624
+A +Q + ++ +A + + A++ + + + A
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT 374
Query: 625 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684
+ A S G K +++ + + + A
Sbjct: 375 PEQVVAIASNGG-------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
+ Q Q + A + +
Sbjct: 422 KQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGRPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 45/529 (8%), Positives = 113/529 (21%), Gaps = 78/529 (14%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317
++ + + H LT L +T P + + + +
Sbjct: 28 GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT---PEQVVAIASHDGGKQA 84
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
++ + + + + L + L + + P+
Sbjct: 85 LETVQRL---LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437
+ + L ++ +L +A + P A G AL+ +
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK------QALETVQRLLP 195
Query: 438 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495
+L +A P + + + G + A G L
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG-------LTP--------- 239
Query: 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555
V + L + + A L
Sbjct: 240 --------------------QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP------ 273
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
V A + +A +Q + ++ +A + + A++ G + + +
Sbjct: 274 -QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
A + A S K +++ + + +
Sbjct: 333 LCQAH-GLTPQQVVAIASHDG-------------GKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
A G + Q + + A +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQRLLP 433
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
+ + E A+ +++
Sbjct: 434 VLCQAHG--LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 39/454 (8%), Positives = 90/454 (19%), Gaps = 38/454 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ + A L++ + G + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A AL+ + +L +A P + + +
Sbjct: 67 LTPEQVVAIASHDGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A G L + L L
Sbjct: 121 TVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQALLPVLCQA---HGLTP 171
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
+V + + + + + V A +A +Q + ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A + + A++ G + + + A + A S
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASNSG-----G 285
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + +++ + + + A G + Q
Sbjct: 286 KQALET--------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
Q + A + + +
Sbjct: 338 GLTP-----QQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGGGKQA 390
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
E Q L +A L P Q
Sbjct: 391 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 7e-11
Identities = 41/492 (8%), Positives = 102/492 (20%), Gaps = 105/492 (21%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H ++ + + + AG +++ G + +R+ALT
Sbjct: 4 HHHHHQWSGARALEALLTVAGELR-GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
L + P+ + + L +++ +L +A + P+
Sbjct: 63 --APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ--------------- 105
Query: 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484
+ + + + A
Sbjct: 106 -----------------------VVAIASHDGGKQALETVQRLLPVLCQAH--------- 133
Query: 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544
L +V + + + + A
Sbjct: 134 ----------------------------------GLTPEQVVAIASHDGGKQALETVQAL 159
Query: 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604
+ + V A +A +Q + ++ +A + + A++ G +
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664
+ + A + A S G + + +++ +
Sbjct: 220 ALETVQRLLPVLCQAH-GLTPQQVVAIASNGG-----GKQALET--------VQRLLPVL 265
Query: 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ + A + Q Q +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGK 320
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
A + + + E Q L +A L P
Sbjct: 321 QALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 785 TLRFDAGVAMQK 796
G Q
Sbjct: 379 VAIASNGGGKQA 390
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-33
Identities = 65/398 (16%), Positives = 125/398 (31%), Gaps = 73/398 (18%)
Query: 43 WLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98
L + ++ G+ + QF ++ D Y R + +GK
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRR-------ATVFLAMGK 52
Query: 99 IETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158
+ A K + M + + +G LLL +G++++A FK VL+++
Sbjct: 53 SK-----------AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 159 RDNVPA---------------LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
L QA F+ Y+ ++ F + L+V R
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELR 160
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
C K G+ KA + A +L +N EA ++ + Q + + +++ ++
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKL 217
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ K + A G Y
Sbjct: 218 DQDHKRCFAHYKQ-------------------------VKKLNKLIESAEELIRDGRYTD 252
Query: 324 AGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A Y + +K E + + + K A+ +VL++ PDN LK
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Y+ ++A + A + + D Q L +
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 61/366 (16%), Positives = 124/366 (33%), Gaps = 51/366 (13%)
Query: 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186
+ + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + + A RL G K G+L +A F++ L+ +P E A +
Sbjct: 62 KVIALKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES-------- 112
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ +A E+ + AL+ + + L V +
Sbjct: 113 ---------QLVKADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEV---CVWDAE 155
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
A + +G+ KA A+ K K + +Y + + +LGD +L+
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKL--KS-DNTEAFYKISTLYYQLGDHELSLSEVR 212
Query: 367 KVLEIYPDNCETLKALGHI------------YVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
+ L++ D+ + ++ G+ A K +P A+ +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 415 DLGELLISSDTGAALDA---FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 469
E + A + + + P + L + + + ++ A Q
Sbjct: 273 RSKERI-----CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Query: 470 SFKDAL 475
++ A
Sbjct: 328 DYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-21
Identities = 58/465 (12%), Positives = 138/465 (29%), Gaps = 120/465 (25%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ L + + G A + A+V + + P + YY V L +G ++AL +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAV-DGD-P-DNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
KV+ + D GH+ ++ G++++A++ +K K +P + + +L+ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-- 119
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
++ L + + F+ ++ +A L
Sbjct: 120 ---------------------MQRLRSQALDAFDGADYTAAITFLDKIL----------- 147
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E EL + + I D
Sbjct: 148 -------------------------EVCVWDAELRELRAECFIKEGEPRKAISD------ 176
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ D +A+ +++ + + +LS+ V E LK++ + + +
Sbjct: 177 -LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---- 231
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
K + L + R A Y
Sbjct: 232 -------------------KKLNKLIESAE-----ELIRDGR--------YTDATSKYES 259
Query: 667 VI------VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
V+ ++T ++ + + + ++V + + + +
Sbjct: 260 VMKTEPSVAEYTVRSK--ERICHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDR 312
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765
A Y + + A++ Y+ + D QI L + +Q
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 55/434 (12%), Positives = 120/434 (27%), Gaps = 129/434 (29%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAF 261
G GQL A F A+ DP+N A A + + ++AA + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVI 64
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A +G
Sbjct: 65 ALKMDFTAA-------------------------------------RLQRGHLLLKQGKL 87
Query: 322 EKAGLYY------------MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
++A + + + + D+ +A+T +K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF---------------- 191
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
I ++++ G+ E + ++ L LD
Sbjct: 192 ----------------------YKISTLYYQLGDHELSLSEVRECL-------KLDQ--- 219
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549
D +K ++ ++ L R + A+ Y
Sbjct: 220 ----DHKRCFAHYKQVKKLNKLIESAE----------ELIRDGRYTD-------ATSKYE 258
Query: 550 LILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605
++ + + R+ +I + +E L++ NAL + L
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 606 NDDWVKAKETFRAA 619
+ + +A + + AA
Sbjct: 319 EEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 55/455 (12%), Positives = 115/455 (25%), Gaps = 108/455 (23%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ A G + ++G+
Sbjct: 66 LKMDFTAA--------------------------------------RLQRGHLLLKQGKL 87
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ A FK L + S + + QL + ++ ++
Sbjct: 88 DEAEDDFKKVL----------------KSNPSEQEEKEAESQLVK-----ADEMQRLRSQ 126
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
F+ A I IL + A + +I +
Sbjct: 127 ALDAFDGADYTAAITF-------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644
A K+ A + L + D + R L L + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCFA 226
Query: 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704
+ K+ KL L G++ + + V +
Sbjct: 227 HYKQVKKLNKLIES-----------------------AEELIRDGRYTDATSKYESVMKT 263
Query: 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764
SV + H + A+++ L+ + L A + E
Sbjct: 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEE 320
Query: 765 QWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQK 796
+ + + A ++ A +++
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 619 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 789
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 790 AGVAMQKFSASTLQKTRR 807
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 6e-31
Identities = 61/383 (15%), Positives = 120/383 (31%), Gaps = 39/383 (10%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFIL------------ATQYYNKASRIDMHEPSTWVGK 134
++ GV + E+H L A ++ A D + +
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ LA G+ + A V++ D A L + + +G+ ++ + +K+ L+ +PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 195 CPGAIR--------------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
L + G A + L++ + E A
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL----- 295
++ E RK + ++ A ++ A ++ ++ G H L L
Sbjct: 187 FIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 296 ---AVTNHGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQ 350
++ K A G Y A Y + +K E + + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K A+ +VL++ PDN LK Y+ ++A + A + + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 411 QAFIDLGELLISSDTGAALDAFK 433
Q L + D +K
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYK 386
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 7e-27
Identities = 64/511 (12%), Positives = 131/511 (25%), Gaps = 115/511 (22%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
G L + Q+ + + L G+ +D+L + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A +G+ A + +QL + A + + + A
Sbjct: 55 GDPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ ++ + P + +
Sbjct: 114 -----EDDFKKVLKSNPSENEEKEAQSQL----------------------IKSDEMQRL 146
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
+ A + GDY A + ++ E + +K G+ R A+++ +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---RELRAECFIKEGEPRKAISDLKAA 203
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
++ DN E + +Y QLG E + +R+ K+D + F
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-------------- 249
Query: 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488
+K + L K G + A ++ +
Sbjct: 250 --HYKQVKKLNKL----------IESAEELIRDGRYTDATSKYESVM------------- 284
Query: 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548
+ + + E V + + V A +
Sbjct: 285 -----------------------KTEPSIAEY---TVRSKERICHCFSKDEKPVEAIRVC 318
Query: 549 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL---- 604
+L D V+A A +I+ A + N L +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378
Query: 605 -KNDDWVKAKETFRAASDATDGKDSYATLSL 634
+ D+ K R A + +Y L+L
Sbjct: 379 SQKRDYYKILGVKRNAKKQ-EIIKAYRKLAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-21
Identities = 58/492 (11%), Positives = 127/492 (25%), Gaps = 119/492 (24%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H +++ ++ Y ++ + ++ K + LG+ L G AL+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-------MADVEK-------HLELGKKLLAAGQLADALSQ 48
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
F ++ PDN +++ +G+ + A L K ++ A
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA------------ 96
Query: 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484
G + ++G+ + A FK L
Sbjct: 97 --------------------------RLQRGHLLLKQGKLDEAEDDFKKVL--------- 121
Query: 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544
K+ + + Q ++ L + A D AA
Sbjct: 122 --KSNPSENEEKEAQSQLIKSD-----------------EMQRLRSQALNAFGSGDYTAA 162
Query: 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604
IL + A + +I + A K+ A + L
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664
+ D + R L L + ++ + K+ KL
Sbjct: 223 QLGDHELSLSEVREC------------LKL-DQDHKRCFAHYKQVKKLN----------- 258
Query: 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ L G++ + + V + + + H +
Sbjct: 259 ------------KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR-SKERICHCF 305
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
A+++ L+ + L A + E + + + A ++
Sbjct: 306 SKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 785 TLRFDAGVAMQK 796
+R A +
Sbjct: 364 QIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 49/374 (13%), Positives = 110/374 (29%), Gaps = 49/374 (13%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY-YTYLG 97
L KQGK+++ F+++L+ + + + + ++ + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
+ A + +K + + + + + + +GE +A S K +
Sbjct: 151 LNAFGSGDYTA----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-----------GIGLC 206
DN A + + + G + SL + L++
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ G+ A ++ ++ +P E V + + ++ P
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
AL A + + ++ + H L ++ +K
Sbjct: 327 DNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
Y + VK K E I Y L L+ +PDN + +
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLA-------------------LQWHPDNFQNEEEKKKA 424
Query: 386 YVQLGQIEKAQELL 399
+ I A+E+L
Sbjct: 425 EKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 558 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 594
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 649
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 650 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 769
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 770 KKSLLRAIHLAPSN 783
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 68/447 (15%), Positives = 133/447 (29%), Gaps = 80/447 (17%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
L + E + E+ T++ N+ + M L KG+ E A +
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCN-----LLAYLKHLKGQNEAALECLRKAE 78
Query: 156 EADRDNVPALLGQ---------ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR------ 200
E + A V ++ GR SD + + V R
Sbjct: 79 ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138
Query: 201 ---LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257
G + Q +A+ F++AL+ P+N E LA+ + + + ++ +
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 258 QRAFEIYPYCAMALNYLANHFF----FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
++A + P LA + E+L E AL P + + A+
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAK 255
Query: 314 SYHSKGDYEKA---------------------GLYYMASVKEINKPHEFIFPYYGLGQVQ 352
Y K + +KA G Y A V ++ E G+ +
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE-----NGMYGKR 310
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-- 410
L A+ + +K E + L ++ Q E+A+ +K +
Sbjct: 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Query: 411 -QAFIDLGELL-------------------ISSDTGAALDAFKTARTLLKKAGEEVP--I 448
+ G I+ + + + K +
Sbjct: 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS 430
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDAL 475
E L+ + + + + A + + L
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 64/433 (14%), Positives = 143/433 (33%), Gaps = 51/433 (11%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
+ + + ++A +G+ E + L + E+ +
Sbjct: 44 FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y ++G++ Q ++ + ++ + RI+ E G +L + E+A F+
Sbjct: 104 YYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 153 IVLEADRDNVPALLGQACVEF---NRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGL--C 206
LE N G A + N ++++ ++A++++P + L + L
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
R + + G+ + + AL+ P + L + A + +E K +E +++A E P
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN 279
Query: 267 CAMALNYLANHFFFTGQHFL------------VEQLTETALA----VTNHGPTKSHSYYN 310
A + + + + +L A+A
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL-KLGDFRSALTNFEKVL 369
LA + YE+A Y+ + P + G QL ++ A+ +F + +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 370 EIYPDNCETLKA------------------------LGHIYVQLGQIEKAQELLRKAAKI 405
+I + E K L + ++++A E + +
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 406 DPRDAQAFIDLGE 418
A GE
Sbjct: 460 GSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 9e-24
Identities = 73/513 (14%), Positives = 142/513 (27%), Gaps = 107/513 (20%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNL 311
+ F+ + A N LA GQ+ + A + ++ N
Sbjct: 41 RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINK-------PHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y+ G +Y K + G +++ A
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 365 FEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
FEK LE P N E L +L + A + LR+A +++P + + L L
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL- 219
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
+ L+++A E+ P +VL + + K E + A + K A
Sbjct: 220 -HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA----- 273
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
+E N + +
Sbjct: 274 --------------------------------------LEYIPNNAYLHCQIG------- 288
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
YR +F+ + + + K + ++ + +A + N S+L
Sbjct: 289 ------CCYRAKVFQVMNLRENGMYGKR--KLLELIGHAVAHLKKADEANDNLFRVCSIL 340
Query: 600 GDLELKNDDWVKAKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657
L D + +A+ F+ + T L GN+ + ++ E +A H
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-MKCEDKA----IHHF 395
Query: 658 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 717
+ ++ L + + +SK+ +
Sbjct: 396 IEGVKIN--------QKSREKEKMKDKLQKIAKMRLSKN--------------GADSEAL 433
Query: 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750
LA + A + + L A
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 98.1 bits (244), Expect = 2e-21
Identities = 68/494 (13%), Positives = 145/494 (29%), Gaps = 74/494 (14%)
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPS 194
L+ + ++ E A + A ++ +G+ +LE ++A ++
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 195 CPGA--------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Y +G+L + + + + +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ G + +RA + E AL P
Sbjct: 144 WTRLKCGGNQNERAKVCF---------------------------EKALEKK---PKNPE 173
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG----QVQLKLGDFRSAL 362
LA + + ++ + + I + + L +++ + +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 420
E+ LE P + L++ Y + + +KA ELL+KA + P +A +G
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 421 -----------ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 467
L+ A LKKA E V + + +H ++E A
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527
F+ L K + + ++ + V++ K
Sbjct: 354 EYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSRE 407
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
+ L++I ++ L K +A LA + + +Q + E L+
Sbjct: 408 KEKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 588 VNGKYPNALSMLGD 601
P+A S G+
Sbjct: 459 SGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 49/480 (10%), Positives = 118/480 (24%), Gaps = 126/480 (26%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH------EFIFPYYGLGQVQLKL 355
K+ LA H KG E A + + I + H + + V +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 356 GDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLG--QIEKAQELLRKAAKI 405
G +KV + ++ E G ++ G Q E+A+ KA +
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF---EKG 462
P++ E + + + +
Sbjct: 168 KPKNP--------------------------------------EFTSGLAIASYRLDNWP 189
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
++A + A+ + ++ L
Sbjct: 190 PSQNAIDPLRQAI------------------------------------RLNPDNQYLKV 213
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L + E+ + L L K D A + ++ +IEL+
Sbjct: 214 LLALKLHKMREEGEEEGE---GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+AL+ +G V
Sbjct: 271 KKALEYIPNNAYLHCQIGCCYRAKVFQVMNL-------------------------RENG 305
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ +++ +L + A + + + + + A Q++ ++ F +
Sbjct: 306 MYGKRKLLEL----IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
V Q+ + + A+ + ++ + + + + + +
Sbjct: 362 SKELTPVAKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 590 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 693
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 749
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-28
Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 62/401 (15%)
Query: 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80
P + S + ++ + +F K E +E + + +
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
+ + Y R EE N+ ++ + G
Sbjct: 198 YK----RSPESYDKADESFTKAARLFEE----QLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
K + A K +E V + + A + +R ++ ++ +AL++ +
Sbjct: 250 KNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-Y 307
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
G + L +A + F +A +LDPEN+ + LA + + N+ A
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK---FDDCETLFSEA 364
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+P A K D
Sbjct: 365 KRKFPEAPEV-------------------------------------PNFFAEILTDKND 387
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---------LGDFRSALTNFEKVLEI 371
++KA Y ++ E+ + Y G+ + K + +F A EK ++
Sbjct: 388 FDKALKQYDLAI-ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
P + + L + +Q I++A L ++A + +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 6e-27
Identities = 50/448 (11%), Positives = 134/448 (29%), Gaps = 74/448 (16%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V+Y+ L + ++ + KA + + + G+ A
Sbjct: 40 VFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Query: 151 FK---IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--------- 198
+ + + ++ +L + + + + A
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 199 ---IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG------ 249
+ + + + + + + D E + L L ++ + A
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 250 ---IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
+ ++K ++ A++L + F + + A+ + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVN 271
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
SY +A + D + Y+ ++ +++ YY GQ+ L ++ A +F+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKAL-KLDS--NNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL------ 420
K E+ P+N L + + + + + L +A + P + E+L
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 421 -------------------------------ISSDTGAALDAFKTARTLLKKAGEEVP-- 447
++ F A LL+KA + P
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448
Query: 448 IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ + + ++ + + A F+++
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 59/391 (15%), Positives = 130/391 (33%), Gaps = 42/391 (10%)
Query: 69 PEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP 128
+ ++ + ER A+ G I+T E L+TQ + + P
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE---LSTQPAKERKDKQENLP 159
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------QACVEFNR--G 176
S + E + + EAD++ + L +A F +
Sbjct: 160 SV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV- 235
+ + L+ ++ ++ G+ ++ A + ++A++L P V + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISL-EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 236 -ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
AL + D + +A ++ + + F + + + A
Sbjct: 276 MALIMADRNDSTEY-----YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+ P Y LA + + ++ + + + P E ++
Sbjct: 331 KELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFP-EAPEVPNFFAEILTD 384
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---------LGQIEKAQELLRKAAKI 405
DF AL ++ +E+ + + + + +A LL KA+K+
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 406 DPRDAQAFIDLGELLISS-DTGAALDAFKTA 435
DPR QA I L ++ + D A+ F+ +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 75/506 (14%), Positives = 157/506 (31%), Gaps = 50/506 (9%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ + + + Y+ A YY ++ E+ + F Y L + +GD +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKEDPVF---YSNLSACYVSVGDLKKV 58
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELL 420
+ K LE+ PD + L LG+ A L + D DA L L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVL-----------NNIGVIHFEKGEFESAHQ 469
+ F T E F + E
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 470 SFKDAL-GDGIWLTLLDSKTKTYVIDASASMLQF-KDMQLFHRFENDGNHV-ELPWNKVT 526
++ ++ D + L + K + F K +LF + N +L
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L + +D + A + + + V++Y+ +A I RN+ ++AL
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
K++ + G + ++ +A + F A + D ++ + + L E
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC-----LAYRE 351
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ + + L++ + N +L +K FD + + E +
Sbjct: 352 NK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 707 GSVFVQMPDVWINLAHVY---------FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
++ +++ +A + NF A + + + Q + LA
Sbjct: 404 -----KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLA 456
Query: 758 RTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ + E + + LA +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTM 482
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-23
Identities = 63/468 (13%), Positives = 133/468 (28%), Gaps = 44/468 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G + + A+ + LE+ D L YV +G ++K E+ KA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463
+ P ++ + A+ IE + + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS--IEPMLERNLNKQAMSK 125
Query: 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523
+ A L+ +K + + S+ F F+ +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA--SFFGIFKPELT------- 176
Query: 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583
N E ++ L + + KA + ++ N
Sbjct: 177 ----FANYDESNEA-----DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643
E K+ K +L G + +D + A E + A + +SY Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY--------IYMALI 279
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
++ + + + + ++N G + +D + F + +E
Sbjct: 280 MADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ +I LA + + + F ++ RKF ++ + A +
Sbjct: 333 LDPEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDK 385
Query: 764 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 811
+ K AI L + + K + T T E
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 3e-21
Identities = 60/479 (12%), Positives = 139/479 (29%), Gaps = 73/479 (15%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
KG + + A + LE D V + + G +E +AL+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVALAVMDLQANEAAG 249
+ P + L LG+ A +L D + L E
Sbjct: 68 LKPDYSKVL-LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML--------ERNL 118
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
++ M K++ F L+ + + T++A S++
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA----------SFF 168
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEK 367
+ + + +Y+++ + ++ ++ Y F L +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDST 287
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
+ F A LK V + G ++F ++ A + F A
Sbjct: 288 EYYNYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAK----------- 331
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E D ++ + + + +
Sbjct: 332 -------------------------ELDPENIFPYIQLACLAYRENKFDDCETL------ 360
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605
+ K+ + + A I +N+ +++ + A+++ K + L K
Sbjct: 361 -FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 4e-20
Identities = 75/503 (14%), Positives = 156/503 (31%), Gaps = 74/503 (14%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
AL + F +Y D++++Y AL++ + C +G L K +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEM 61
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------PYCAMAL 271
+AL+L P+ + L+ A +G+ K A A
Sbjct: 62 STKALELKPDYSKVLLRRAS----------ANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHG-------------------PTKSHSYYNLA 312
L + L E+ + A T S++ +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEKVLE 370
+ + +Y+++ + ++ ++ Y F L + +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAAL 429
+ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYY 290
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
+ F A LK V + G ++F ++ A + F A L
Sbjct: 291 NYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKA------KELDPENIF 339
Query: 490 TYVIDASA--SMLQFKD-MQLFHR-FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 545
Y+ A +F D LF E+P +L + + +
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ----- 394
Query: 546 VLYRLILFKYQDYVDAYLRLAAI---------AKARNNLQLSIELVNEALKVNGKYPNAL 596
Y L + Y+ +A + N + L+ +A K++ + A
Sbjct: 395 --YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452
Query: 597 SMLGDLELKNDDWVKAKETFRAA 619
L ++L+ +D +A F +
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 3e-19
Identities = 57/586 (9%), Positives = 138/586 (23%), Gaps = 138/586 (23%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G ++ + A + + AL+L +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKED---------------------------------- 38
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ + L+ + G V +++ AL + P S A + G +
Sbjct: 39 ----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A + I P + + + + + +
Sbjct: 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Query: 384 HI-------------YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA--- 427
+ + + E ++ + D +L + S A
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 428 ---ALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482
A F+ + + L + G+ F K + AH+ K A+
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI------- 264
Query: 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542
L + +Y+ ++ + E +
Sbjct: 265 ELFPRVNSYI------------------------------YMALIMADRNDSTEYYNY-- 292
Query: 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
+ L + Y + N + + ++A +++ + L L
Sbjct: 293 -----FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662
+ + + + F A + L ++ +KA +
Sbjct: 348 AYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAE-----ILTDKND--------FDKALK 393
Query: 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--------- 713
Y I G ++ + + + EA +
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEA------TNLLEKASKLDP 446
Query: 714 --PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
I LA + Q + A+ +++ + + A
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 8/271 (2%)
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L + + A Y L +D V Y L+A + +L+ +E+
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+AL++ Y L + A S D D+ L A
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 643 LRNEKRAPKLEATHLEKAKEL--YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700
+ K T EL + + + + +++ + +
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-----YYNTDAQILLY 755
EA + + A +F A ++++ L K A L +
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242
Query: 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786
+ + + +AI L P +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 9e-28
Identities = 69/683 (10%), Positives = 158/683 (23%), Gaps = 83/683 (12%)
Query: 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162
R E A + ++D + +G + + ++ L V
Sbjct: 133 ARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192
Query: 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
A+ + L +A + P+ AI + L + + +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI-ASHDGGKQALETMQRLLPVLCQ 251
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A L P+ V A+ G ++ +E +QR +
Sbjct: 252 AHGLPPDQVVAI----------ASNIGGKQALETVQRLLPVL------------------ 283
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
A +T P + + + + ++ + + +
Sbjct: 284 ---------CQAHGLT---PDQVVAIASHGGGKQALETVQRLLPVL---CQAHGLTPDQV 328
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ L + L + + PD + + G L +++ +L +A
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 388
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFE 460
+ P A G AL+ + +L +A P + + +
Sbjct: 389 HGLTPDQVVAIASNGGKQ-------ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 441
Query: 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520
+ G L ++ QL L
Sbjct: 442 LETVQRLLPVLCQTHG------LTPAQVVAIASHDGGKQALETVQQLLPVLCQA---HGL 492
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
++V + + + + + D V A +A +Q +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
++ +A + A++ G + + + A A S
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTQVQVVAIASNIG---- 607
Query: 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700
K +++ + + + + A + Q
Sbjct: 608 ---------GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658
Query: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760
+ A + + +
Sbjct: 659 AHGLTP-----DQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQEQVVAIASNNGGK 711
Query: 761 YEAEQWQDCKKSLLRAIHLAPSN 783
E Q L +A L P
Sbjct: 712 QALETVQRLLPVLCQAHGLTPDQ 734
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-22
Identities = 39/368 (10%), Positives = 96/368 (26%), Gaps = 22/368 (5%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ + + A V+Q D V A+ +
Sbjct: 448 LLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
L +A + P AI G + L + + +A L P+ V
Sbjct: 508 QALATVQRLLPVLCQAHGLTPDQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 233 ALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
A+ + L+ + + + +A + +A+ + +
Sbjct: 567 AIASNGGGKQALETVQRL-----LPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
A +T P + + + + ++ + + + + G
Sbjct: 622 LCQAHGLT---PAQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT--PDQVVAIASNGG 675
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ L + L + + + + + L +++ +L +A + P
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 468
A G AL+ + +L +A P + + + +
Sbjct: 736 VAIASNGGGK------QALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 469 QSFKDALG 476
G
Sbjct: 790 PVLCQDHG 797
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-14
Identities = 41/454 (9%), Positives = 96/454 (21%), Gaps = 73/454 (16%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L + L + + P + + L +++ +L +A
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A AL+ + +L +A P + + + G
Sbjct: 255 LPPDQVVAIASNIGGK------QALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A L
Sbjct: 309 TVQRLLPVLCQAH-------------------------------------------GLTP 325
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
++V + + + + + D V A +A +Q + ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A + A++ G +A ET + + A
Sbjct: 386 CQAHGLTPDQVVAIASNGG--------KQALETVQRLLPVLCQAHGLTP------DQVVA 431
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + K +++ + + + + A + Q
Sbjct: 432 IASHDGG-KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH 490
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
+ + A + + +
Sbjct: 491 G-----LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQA 543
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
E Q L +A L P G Q
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 577
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 2e-13
Identities = 43/363 (11%), Positives = 89/363 (24%), Gaps = 33/363 (9%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + G A V++ ++ V A+
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 228 PENVEAL-----------------------VALAVMDLQA-NEAAGIRKGMEKMQRAFEI 263
P V A+ L + + A G ++ +E +QR +
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKG 319
+ + L V P + + + +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
++ ++ + + G Q L + L + + PD +
Sbjct: 886 TVQRLLPVL---CQDHGLTLDQVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAI 941
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439
+ L +++ +L + + P A G A L A L
Sbjct: 942 ASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAAL 1001
Query: 440 KKA 442
Sbjct: 1002 TND 1004
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 24/322 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W+ + Q + V + + E + P + G ++ F + A+
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A + +G+ + + A A QR L+L P N++AL+ALAV + + A
Sbjct: 94 QDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---------N 299
E ++ + P + T + + V N
Sbjct: 153 -----CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L +H G++ +A + A++ +P E + LG
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRP-EDYSLWNRLGATLANGDRSE 264
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A+ + + LEI P + LG + LG +A A + +
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 420 LISSDTGAALDAFKTARTLLKK 441
+ +G A + A +L+ +
Sbjct: 325 I----SGNIWAALRIALSLMDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-20
Identities = 59/403 (14%), Positives = 120/403 (29%), Gaps = 66/403 (16%)
Query: 252 KGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV----TNHGPTKSH 306
+ ++ E + +A + + Q + + T +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ +GD L+ A++ + P + LG Q + + ++A+ +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG-DAEAWQFLGITQAENENEQAAIVALQ 123
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS---- 422
+ LE+ P+N + L AL Y + A E L+ K +P+ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 423 SDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478
S + + + L +A G+ + ++ +GV+ GEF A +F AL
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL--- 240
Query: 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQ 537
L WN++ L N R E
Sbjct: 241 ---------------------------------TVRPEDYSL-WNRLGATLANGDRSEEA 266
Query: 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597
+ Y L ++ + L + ++ AL + K N
Sbjct: 267 VEA-------YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
+ + + W R A D + + +LG+ +
Sbjct: 320 VPHP-AISGNIW----AALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 56/395 (14%), Positives = 113/395 (28%), Gaps = 60/395 (15%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
A ++ + W + E+ + + + E + + +
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ G K+ + + A D + W G + A A +
Sbjct: 69 F-EEGLKRLKEGDLPV----TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYK-- 209
LE +N+ AL+ A N D+ E K ++ +P ++ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 210 ------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
L ++ + A + + ++ DLQ + + RA +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDP-------DLQTGLGV-LFHLSGEFNRAIDA 235
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ AL V P + L + + E+
Sbjct: 236 F---------------------------NAALTVR---PEDYSLWNRLGATLANGDRSEE 265
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A Y ++ EI +P FI Y LG + LG +R A++NF L + + +
Sbjct: 266 AVEAYTRAL-EI-QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 384 -----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+I+ L + + D
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 45/371 (12%), Positives = 101/371 (27%), Gaps = 47/371 (12%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
++ + + ++ + Y P + + G +LK GD +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYY---FHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
E + P + E + LG + + A L++ ++ P + +A + L
Sbjct: 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT--- 144
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482
+ A LK ++ P ++ N + G
Sbjct: 145 ---NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG------ 195
Query: 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542
V + G+ ++ + L L +
Sbjct: 196 ---------VKELYLEAAHQN-----------GDMID-----PDLQTGLGVLFHLSGEFN 230
Query: 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
A + L + + RL A + + ++E AL++ + + LG
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290
Query: 603 ELKNDDWVKAKETFRAA-----SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657
+ + +A F A + + +S W + P+L
Sbjct: 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350
Query: 658 EKAKELYTRVI 668
++ R
Sbjct: 351 LGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 520
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 641 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 696
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 697 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 750
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 805
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 51/420 (12%), Positives = 95/420 (22%), Gaps = 94/420 (22%)
Query: 355 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 407 PRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 463
+D + G + D + + A + P E +G+ E
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFM-------EAAILQDPGDAEAWQFLGITQAENEN 114
Query: 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523
++A + + L E N+++
Sbjct: 115 EQAAIVALQRCL------------------------------------ELQPNNLK---- 134
Query: 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583
L LA A + + + Y + S +
Sbjct: 135 ---ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 584 EALKVNGKYPNALSM------------LGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631
V Y A LG L + ++ +A + F AA +D
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPEDYSLW 250
Query: 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 691
LG L N R E+A E YTR + + + G+ G +
Sbjct: 251 NRLGA-----TLANGDR--------SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 692 DVSKDLFTQV-------QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744
+ F + ++W L L L
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-26
Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 66/375 (17%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQLLL 139
L+A + LG T ++ S+ +G+ L
Sbjct: 9 LSASAENVSSLGLGSGGG---------GTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 140 AKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRALQVHP 193
G+ + F+ ++A +++ L LG A F G Y+ +++++K L +
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY--FYLGDYNKAMQYHKHDLTLAK 117
Query: 194 SCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------NV-- 231
S A G +G +G+ +A +R L L + NV
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177
Query: 232 ---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHFFFTG 282
+ L + + + +E Q ++ A L N ++ G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 283 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS---VKEIN 336
+ + L + + + NL S+ G +E A +Y + E+
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 390
+ Y LG L +F +A+ + L I +LG+ + +G
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357
Query: 391 QIEKAQELLRKAAKI 405
E+A + + ++
Sbjct: 358 GHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-26
Identities = 62/387 (16%), Positives = 119/387 (30%), Gaps = 74/387 (19%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ +G G + S + L + N G + F++ A+
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGS-GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 190 QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Q AI +G + LG KA Q + L
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------------- 114
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGP 302
+ ++ A + L N G+ E L + +
Sbjct: 115 ----------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-L 163
Query: 303 TKSHSYYNLARSYHSKGDY-----------------EKAGLYYMAS---VKEINKPHEFI 342
++ + YNL YH+KG + +A +Y + ++++
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
LG LGDF++A+ + ++ L I LG+ ++ LGQ E A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 397 ELLRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI- 448
E ++ + +AQ+ LG + A++ + ++ G+ +
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDAL 475
++G H G E A + + L
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 15/190 (7%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGD 357
G S S S G + + + G+ GD
Sbjct: 4 GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 358 FRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKI-----DPR 408
R+ + F+ ++ ++ LG+ Y LG KA + + + D
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 409 D-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFE 465
A++ +LG L A + TL ++ G+ + L N+G ++ KG+
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183
Query: 466 SAHQSFKDAL 475
K
Sbjct: 184 GQRNPGKFGD 193
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 58/462 (12%), Positives = 121/462 (26%), Gaps = 129/462 (27%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 400
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 401 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460
A + D + + + +G +F
Sbjct: 73 AAIQAGTEDLRT---------------------LSAIY-------------SQLGNAYFY 98
Query: 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520
G++ A Q K LTL ++ + +
Sbjct: 99 LGDYNKAMQYHKHD------LTL---------------------------AKSMNDRLGE 125
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
NL L+ + A++ L + D + +A NL
Sbjct: 126 ----AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGN--- 174
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGN- 636
GK+ + + + +A E ++ + + + GN
Sbjct: 175 ----VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR-ACGNL 229
Query: 637 ---W----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEK 688
+ ++ AA+ + + L A+E R + SNL G
Sbjct: 230 GNTYYLLGDFQAAIEHHQER-------LRIAREFGDRAAERRANSNL------GNSHIFL 276
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL- 741
GQF+ + + + + + ++ V++ + +L + Y F A++ + L
Sbjct: 277 GQFEDAAEHYKR-----TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 742 --RKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
++ A+ L H + K + + LA
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 28/273 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR---QAF 220
A F Y++++E + + + P +C Y+L + A+ + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETY 63
Query: 221 QRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278
+ M + A +++ Q A + + ++F
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLA-----IQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ G L Q E + T T +Y L ++Y+ +Y KA ++ + E+
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKP- 173
Query: 339 HEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYV 387
Y + A +EK++E+ K + + Y
Sbjct: 174 -NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
KA + +DP + +A L L
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 44/304 (14%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
K E A + +NK + P + + + + A +
Sbjct: 6 EFRYADFLFKNNNYAE----AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 153 IVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
+ + +G+ S +++ Y+ A+ + IG Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG-QIGSYFYN 120
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
G A Q ++ ++ + + L + A + E+ P
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA-----DSSFVKVLELKPNI 175
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ + A + LA K YEK +
Sbjct: 176 YIGYLWRARANAAQDPD----------------------TKQGLA-----KPYYEKL-IE 207
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
A K E I + D A ++ +L + P N + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 388 QLGQ 391
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 22/215 (10%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAG 325
A+ F + A+ V N + Y A Y+ Y+ A
Sbjct: 5 VEFRYADFLFKNNNY-------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
++N + G++ +K G A+ ++ ++ + +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE 445
+ G A + + K + D + F +LG+ + A + K E
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY------YYNKEYVKADSSFVKVLEL 171
Query: 446 VP--IEVLNNIGVIHFEKG---EFESAHQSFKDAL 475
P + + + A ++ +
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 65/291 (22%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ---ELLRK 401
+ K ++ A+ F K+ ++ Y +L + + AQ E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 402 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHF 459
+ F G++L A + A + +++ IG +
Sbjct: 66 KVNATKAKSADFEYYGKIL------MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519
KG F A Q + + +
Sbjct: 120 NKGNFPLAIQYMEKQI------------------------------------RPTTTDPK 143
Query: 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL---Q 576
V + L + + V A + +L + YL A A++
Sbjct: 144 -------VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 577 LSIELVNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
L+ + ++V + A + N D VKA ++
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 37/282 (13%), Positives = 70/282 (24%), Gaps = 52/282 (18%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D+ A FK +E F ++ + R L Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA------KKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 93 -------------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVG 133
+ Y GKI K+ + A Q Y A D +
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQ 113
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G KG A + + + + Y + + + L++ P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 194 SCPGAIRLGIGLCRYKLGQLGK---ARQAFQRALQLDPEN--------VEALVALAVMDL 242
+ L K A+ +++ +++ +EA +A
Sbjct: 174 NIYIGY-LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ K + + P A++ L H
Sbjct: 233 INRD---KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 620 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 678
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 783
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 31/324 (9%), Positives = 62/324 (19%), Gaps = 63/324 (19%)
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 433
N + + +A E+ K + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 434 TARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491
T G I +KG+ A Q ++ A+
Sbjct: 62 T----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---------------- 101
Query: 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551
+ D ++ + + + A
Sbjct: 102 --------------------DRDTTRLD-------MYGQIGSYFYNKGNFPLAIQYMEKQ 134
Query: 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611
+ + L + + L++ D K
Sbjct: 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Query: 612 ---AKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
AK + A G L N + KA +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------KVKADAAWKN 246
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQ 690
++ +N A +G + L
Sbjct: 247 ILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 583
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 754
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 16/247 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++E Y +A ++H Y+ G+ A A++ E
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 233 A--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+++ + + + +++ E Y ++ + A+ +
Sbjct: 74 DYKVISKSFARIGNAYHK-----LGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKK 127
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E V P K+ + Y +K D+ A Y +K P E Y
Sbjct: 128 AEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-P-EDARGYSNRAA 181
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 411 QAFIDLG 417
Sbjct: 242 NGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 24/268 (8%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+G + ++A + E +D L +A E+ +G Y ++ A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQANEAAG 249
++ I ++G ++ ++ +++ A + L+ E
Sbjct: 67 QGREMRADYKV-ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE- 124
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKS 305
++K + + P A +F A+ P +
Sbjct: 125 ----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDW-------PNAVKAYTEMIKRAPEDA 173
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
Y N A + + +A ++ E + F+ Y Q+ + ++ SAL
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDP--NFVRAYIRKATAQIAVKEYASALETL 230
Query: 366 EKVLEIYPDNCE--TLKALGHIYVQLGQ 391
+ + + + + +Y + Q
Sbjct: 231 DAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 56/302 (18%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + + ++ +++A +Y + E++K + + + G++ +
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITY---LNNRAAAEYEKGEYET 56
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A++ +E + K + + ++G L+K + + ++L
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADIL 115
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478
L + + P E G +F K ++ +A +++ + +
Sbjct: 116 ------TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--- 166
Query: 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538
+ N+ L L E I
Sbjct: 167 ---------------------------------KRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 539 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598
D + K ++V AY+R A A ++E ++ A + + N S
Sbjct: 194 AD-------CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246
Query: 599 LG 600
Sbjct: 247 RE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 42/274 (15%), Positives = 77/274 (28%), Gaps = 53/274 (19%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G YK Q +A + + +A +L ++ L A + + A
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAA----------AEYEKGEYETAIST 60
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A+ G Y +++S+ G+
Sbjct: 61 L---------------------------NDAVEQ---GREMRADYKVISKSFARIGNAYH 90
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+++ K + + KL + L E + P+ E + G
Sbjct: 91 KLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 443
Y A + + K P DA+ + + L A L +F A KA
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL------AKLMSFPEAIADCNKAI 200
Query: 444 EEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
E+ P + E+ SA ++ A
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 50 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK----IET 101
+++G+ + +E+G E+ Y +G Y LG IE
Sbjct: 48 EYEKGEYETAISTLNDAVEQG--REMRADY----KVISKSFARIGNAYHKLGDLKKTIEY 101
Query: 102 KQREKEEH-----------FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
Q+ EH + + ++ + +G+ K + A A
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ +++ ++ +A + +++ +A++ P+ A IR +
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT--AQIA 219
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ + A + A D E A + L
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 26/275 (9%), Positives = 54/275 (19%), Gaps = 83/275 (30%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G K F A+ ++ K E++ D L + G+ E A L A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ I G
Sbjct: 67 QGREMRADY--------------------------------------KVISKSFARIGNA 88
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
K + K+ T
Sbjct: 89 YHKLGDLKKTI-------EYYQKSLTE------------------------------HRT 111
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
+L L +++ + + + +++ +++ E
Sbjct: 112 ADILTKLRNAEKELKK-------AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+K + S K + +A A
Sbjct: 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 620 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 740 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 794 MQKFSAS 800
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 569 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 622
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 623 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 743 KFYYNTDAQILLYLARTHYEAEQ 765
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 27/314 (8%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + Q ++ + + + +++ ++ Q P A R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+GL + + + G A A A LDP+++ ALAV + AA + ++
Sbjct: 61 -LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRA 114
Query: 260 AFEIYPYCAMALNYLAN--------HFFFTGQHFLVEQLTETALAVTNH----GPTKSHS 307
P + + F + + P +
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +L Y+ +Y+ A +V+ +P + + LG + AL + +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVE--LRP-DDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427
L+I P + + Y + Q + A + L +A + + T +
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA----TRS 287
Query: 428 ALDAFKTARTLLKK 441
D F+ ++ +
Sbjct: 288 MWDFFRMLLNVMNR 301
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 33/357 (9%), Positives = 79/357 (22%), Gaps = 76/357 (21%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+ L + A + + W G +
Sbjct: 25 MEEGLSMLKLANLA-----------EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------- 198
A A D ++ A N + +L + L P
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 199 ------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
+ + R AL+++P + + +L V +
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV----------LYN 183
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A A+ + P + + L
Sbjct: 184 LSNNYDSAAANL---------------------------RRAVELR---PDDAQLWNKLG 213
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ + ++A Y ++ +IN P ++ Y + + + A + + +
Sbjct: 214 ATLANGNRPQEALDAYNRAL-DIN-P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 373 PDNCETLKALG-----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF---IDLGELLI 421
++ + ++ + F L +L+
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSMLL 327
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-19
Identities = 59/303 (19%), Positives = 99/303 (32%), Gaps = 39/303 (12%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235
G + Y + GL KL L +A AF+ Q PE EA
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP-MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295
+L + NE + + A + P LA AL
Sbjct: 60 SLGLT-QAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAAL 109
Query: 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355
A YE+ G + + +I+ +
Sbjct: 110 A-----------SLRAWLLSQP--QYEQLGSVNLQADVDIDDLN-----VQSEDFFFAAP 151
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 416 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 472
LG L + ALDA+ A + P + V+ N+ V + +++ A +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLV 264
Query: 473 DAL 475
A+
Sbjct: 265 RAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 22/173 (12%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ--------YYNKAS 121
+D V AL V +T
Sbjct: 83 MLDPKDIAV-------HAALAVSHTNEHNAN----AALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
+ + A E + + LE + ++ + Y +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 182 LEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+RA+++ P +LG L + +A A+ RAL ++P V
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATL--ANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 40/301 (13%), Positives = 85/301 (28%), Gaps = 27/301 (8%)
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
N + E P + + LA L E A++ + + + +A+ L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAE-------AALAFEAVCQAAPEREEAWRSLGLTQAE 67
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 630
L+I +N A ++ K + L + A + RA + +
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690
+ + + + + L + + ++ GV+
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KF 744
+D + + E +W L A+ Y L +
Sbjct: 188 YDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Query: 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 804
YN +A ++ Q+ K L+RAI++ T +A + +
Sbjct: 243 MYN--------MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294
Query: 805 T 805
Sbjct: 295 L 295
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 15/255 (5%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ V + + + A + +GL + G +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDA-YIQLGLGYLQRGNTEQAKVP 59
Query: 220 FQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
++AL++DP + +A ALAV + A E+ ++A A LN
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLA-----DEEYRKALASDSRNARVLNNYGGF 114
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ ++ Q A T + P +S + NL +A Y+ S+ +N+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKSL-RLNR 172
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+ + K ++ A ++ + N +L + + A
Sbjct: 173 --NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 398 LLRKAAKIDPRDAQA 412
+ ++ P +
Sbjct: 231 YGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 47/300 (15%), Positives = 85/300 (28%), Gaps = 53/300 (17%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + H +++ ++ +K E Y LG L+ G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQN------PLKTDKGRDEARDAYIQLGLGYLQRGNTEQ 55
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A K LEI P + + AL ++ + + A E RKA D R+A+ + G L
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115
Query: 421 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
A A + V N+G++ + + A + F+ +L
Sbjct: 116 YEQKRYEEAYQRLLEA---SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL---- 168
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
+ N V +A LL +
Sbjct: 169 --------------------------------RLNRNQPS-------VALEMADLLYKER 189
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
+ V A Y L + L +AK + + + ++
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 19/237 (8%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q K + ++ G L +G EQA + LE D + A A V
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF 81
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYKLGQLGKARQAFQRALQ--LDPE 229
+ E Y++AL + G L + + +A Q A Q L PE
Sbjct: 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY--EQKRYEEAYQRLLEASQDTLYPE 139
Query: 230 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
L ++ LQ + A + E +++ + +A+ + ++ Q
Sbjct: 140 RSRVFENLGLVSLQMKKPA---QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ G + S R D + A Y + + ++P
Sbjct: 197 YYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--------LYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ L K D ++ + Y ++G EQ R+ LE ID AD
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE------IDPSSADA--- 73
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
AL V + + + LA + Y KA D G L +
Sbjct: 74 ----HAALAVVFQTEMEPK-----------LADEEYRKALASDSRNARVLNNYGGFLYEQ 118
Query: 142 GEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
E+A + + V + + + E+++++L+++ + P
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + YK + ARQ + Q +N +L+ + + +
Sbjct: 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA---SYGLQ 234
Query: 260 AFEIYPYCAMALNYLAN 276
+YP + A
Sbjct: 235 LKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 93/322 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
IDP A A + V+ + E
Sbjct: 66 IDPSSADAH--------------------------------------AALAVVFQTEMEP 87
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ A + ++ AL +D +
Sbjct: 88 KLADEEYRKAL------------------------------------ASDSRNAR----- 106
Query: 525 VTVLFNLARLLEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
VL N L + A Y + + L ++ + E
Sbjct: 107 --VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
++L++N P+ + DL K ++V A++ + + G + +L LG
Sbjct: 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLG-IRLAKV 221
Query: 643 LRNEKRAPKLEATHLEKAKELY 664
+ A A++ + K LY
Sbjct: 222 FEDRDTA----ASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 676 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 589 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 647
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 648 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 47/281 (16%)
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +S +G+ G Y + E + +A++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
+ + +L +A + +AL+LD A + E +
Sbjct: 61 -INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----------VYVVKEMYKE 109
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
A +++ E AL G +Y L
Sbjct: 110 AKDMF---------------------------EKALRA---GMENGDLFYMLGTVLVKLE 139
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A Y +V E+N + G G AL+ F V E P + +
Sbjct: 140 QPKLALPYLQRAV-ELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
G Y EKA E+L KA I P A L
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 51/266 (19%), Positives = 84/266 (31%), Gaps = 49/266 (18%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMAL 271
+G + + L P + G K E +A E A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP- 59
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
Y N A S + E+A +Y +
Sbjct: 60 ------------------------------------YINFANLLSSVNELERALAFYDKA 83
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ E++ YYG G V + ++ A FEK L +N + LG + V+L Q
Sbjct: 84 L-ELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IE 449
+ A L++A +++ D +A G L A A + E+ P +
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCL------ANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 450 VLNNIGVIHFEKGEFESAHQSFKDAL 475
N GV + K E A + A+
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y + + E E A +Y+KA +D + + G G + + K ++A F+
Sbjct: 60 YINFANLLSSVNELER----ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L A +N V + +L + +RA++++ + A R G+C G
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-RFQFGMCLANEGM 174
Query: 213 LGKARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
L +A F + DP + +A + + E A +E + +A +I P +A
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-----LEMLDKAIDIQPDHMLA 229
Query: 271 LNYLANHFFFTGQH 284
L+ H
Sbjct: 230 LHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 9e-14
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
+ G E A + + KA + + ++ LL + E+E+
Sbjct: 27 GQQMGRGSEFGDYEK-----------AAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A + + LE D A G V + Y ++ + +++AL+ +G
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIY 264
KL Q A QRA++L+ + EA + + + + A + + E
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA-----LSQFAAVTEQD 189
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
P A A + + ++ + A+ + P + + H +
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 55/266 (20%)
Query: 360 SALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
S+ + + P T + G EKA E KA + + DA +I+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 473
LL ++++ + A KA E G ++ K ++ A F+
Sbjct: 63 FANLL------SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533
AL + +L + TVL L +
Sbjct: 117 AL------------------------------------RAGMENGDLFYMLGTVLVKLEQ 140
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + + ++ +A + L ++ + + +
Sbjct: 141 PKLALPY-------LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193
Query: 594 NALSMLGDLELKNDDWVKAKETFRAA 619
+A G ++ KA E A
Sbjct: 194 DAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 39/335 (11%), Positives = 74/335 (22%), Gaps = 98/335 (29%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ + + + G EKA E KA + + DA +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY-- 60
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
N + E E A + AL
Sbjct: 61 ------------------------------------INFANLLSSVNELERALAFYDKAL 84
Query: 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535
E D + + V
Sbjct: 85 ------------------------------------ELDSSAATAYYGAGNVYVVKEMYK 108
Query: 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595
E + L + D + L + +L++ + A+++N A
Sbjct: 109 EAKDM-------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655
G +A F A + D + A + G ++
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVT-EQDPGHADAFYNAGV-----TYAYKEN------- 208
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690
EKA E+ + I ++ A + ++
Sbjct: 209 -REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 749
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-23
Identities = 56/323 (17%), Positives = 100/323 (30%), Gaps = 54/323 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRA 188
G+ L G+ S F+ ++ +++ L LG A F Y+ +LE++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY--FYLHDYAKALEYHHHD 69
Query: 189 LQVHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE-------------- 229
L + + A G +G LG +A QR L + E
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 230 ---------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYL 274
+ + + ++ ++ + + A L
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 275 ANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 332 ---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKAL 382
+++ Y LG L D+ A+ K L I +L
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 383 GHIYVQLGQIEKAQELLRKAAKI 405
G+ Y LG ++A K +I
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 62/357 (17%), Positives = 104/357 (29%), Gaps = 78/357 (21%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQA 219
L + G + F++ A+QV + AI +G + L KA +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-LSAIYSQLGNAYFYLHDYAKALEY 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
L L G + G A A L N
Sbjct: 66 HHHDLTL------------------ARTIGDQLGE-------------AKASGNLGNTLK 94
Query: 280 FTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGD--------------- 320
G + L + + ++ + YNL YH+KG
Sbjct: 95 VLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 321 -----YEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ A Y + V + + LG LG+FR A+ E+ L I
Sbjct: 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213
Query: 373 ------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELL 420
LG+ Y+ LG+ E A E +K + +AQ+ LG
Sbjct: 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273
Query: 421 IS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
D A+D + ++ + + ++G + G + A + L
Sbjct: 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 452
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
N+G ++ KG+ L
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-22
Identities = 59/382 (15%), Positives = 128/382 (33%), Gaps = 53/382 (13%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G+ L G+ S F+ ++ +++ F Y+ +LE++ L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 191 VHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAV 239
+ + A G +G LG +A QR L + AL L
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
+ ++ G + + E+ A+++ E+ A+ +
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY-------------EENLSLVTALGD 182
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLG 356
+ ++ NL +++ G++ A + + + KE Y LG + LG
Sbjct: 183 R-AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241
Query: 357 DFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID---- 406
+F +A ++K L + ++ +LG+ Y L EKA + K I
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301
Query: 407 --PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI--------EVLNNIG 455
+ +A LG + + A+ + + ++ G++ ++ +G
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361
Query: 456 VIHFEKGEFESAHQSFKDALGD 477
+ + S + +L
Sbjct: 362 LSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 48/246 (19%), Positives = 82/246 (33%), Gaps = 38/246 (15%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 327 YY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 378 TLKALGHIYVQLGQI--------------------EKAQELLRKAAKID------PRDAQ 411
L LG++Y G+ + A + + + +
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 412 AFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQ 469
AF +LG + A+ A + + K+ G++ +N+G + GEFE+A +
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 470 SFKDAL 475
+K L
Sbjct: 249 YYKKTL 254
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 58/403 (14%), Positives = 112/403 (27%), Gaps = 88/403 (21%)
Query: 46 IAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101
K G V F ++ + AI + LG Y YL
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQ---------VGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
A +Y++ + + ++ +A +
Sbjct: 66 -----------ALEYHHHD--LTLAR-----------TIGDQLGEAKA------------ 89
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
G + +++ +R L + ++G Y LG + A+
Sbjct: 90 ---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKG--- 141
Query: 222 RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLA 275
++ V + ++ ++ + + A L
Sbjct: 142 -------KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLG 194
Query: 276 NHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS- 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Query: 332 --VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALG 383
+++ Y LG L D+ A+ K L I +LG
Sbjct: 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314
Query: 384 HIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELL 420
+ Y LG ++A K +I + A ++L +L
Sbjct: 315 NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 452
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
N+G ++ KG+ L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGA 427
+C L G + G A ++ D + + LG D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 428 ALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
AL+ TL + G+++ + N+G G F+ A + L
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 46/346 (13%)
Query: 145 EQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
+ S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 258
+G + + Q A A +R L+L P+N AL+ALAV + A E ++
Sbjct: 103 Y-LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILR 156
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
P A + GP+ + S S
Sbjct: 157 DWLRYTPAYAHLVTPAEE-----------------GAGGAGLGPS-----KRILGSLLSD 194
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
+ + ++A+V ++ GLG + G++ A+ F L + P++
Sbjct: 195 SLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA---ALDAFKTA 435
LG Q E+A R+A ++ P ++ +LG I + GA A++ F A
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAVEHFLEA 311
Query: 436 RTLLKKAGE------EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ +K+ + + + + + G+ ++ + L
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 6e-19
Identities = 49/327 (14%), Positives = 101/327 (30%), Gaps = 36/327 (11%)
Query: 112 LATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
L + Y+K + + + + +G L +G++ A F+ ++ D ++ A
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ +R L++ P A + + + +A + + L+
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTA-LMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 228 PENVEALVALAVMDLQANEAAGIRKG------------MEKMQRAFEIYP--YCAMALNY 273
P + A R E A + P
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L F +G++ AL+V P + L + + E+A Y ++
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRAL- 278
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY------- 386
E+ P +I Y LG + LG R A+ +F + L + + G +
Sbjct: 279 ELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336
Query: 387 ----VQLGQIEKAQELLRKAAKIDPRD 409
LGQ + +
Sbjct: 337 RLALSMLGQSDAYGAADARDLSTLLTM 363
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 56/374 (14%), Positives = 104/374 (27%), Gaps = 77/374 (20%)
Query: 308 YYNLARSYHSKGDYEKAGL--YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
A ++ DY+ Y E P + G +L+ GD +A+ F
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425
E ++ P + E + LG + Q A LR+ ++ P + A
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA------------- 134
Query: 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
L + V + A + +D L
Sbjct: 135 -------------------------LMALAVSFTNESLQRQACEILRDWL-------RYT 162
Query: 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP-WNKVTVLFNLARLLEQIHDTVAA 544
Y + + L G+ + + +V LF A + ++
Sbjct: 163 PA---YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDP 217
Query: 545 SVLYRL-ILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEA 585
V L +LF + + +L A N + ++ A
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Query: 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----SDATDGKDSYATLSLGNWNYFA 641
L++ Y + LG + +A E F A + + +S W+
Sbjct: 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337
Query: 642 -ALRNEKRAPKLEA 654
AL ++ A
Sbjct: 338 LALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 630
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 688
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 742
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 743 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-21
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 62/265 (23%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ K + G+ QA S F+ + + D +Y +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YYWTNV 46
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ + + L K KA ++ LQ P NV+ L A A M + +
Sbjct: 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--- 103
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + ++ ++ A
Sbjct: 104 EKDALRMYEKILQLEADNLAA-------------------------------------NI 126
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L Y+ + EK L + + Y G +L + A + +KV+
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPT--KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 370 EIYPDNCETLKALGHIYVQLGQIEK 394
+P E K L I ++ +
Sbjct: 185 LRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-21
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 26/186 (13%)
Query: 308 YYNLARSYHSKGDYEKA----------------GLYYMASVKEINKPHEFIFPYYGLGQV 351
+ G +A Y+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---ATELALA 63
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
K ++ A ++++L+ P+N + L+A + V GQ + A + K +++ +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 412 AFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469
A I LG + L+ + K G+ +E A
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----QYARYRDGLSKLFTTRYEKARN 178
Query: 470 SFKDAL 475
S + +
Sbjct: 179 SLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-18
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 19/213 (8%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV--YYT 94
D L + G+ V FRQ + ++ ++ Y N+ T
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
L K R ++ A +Y + + + ++ + +G+ + A ++ +
Sbjct: 59 ELALAYKKNRNYDK----AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 155 LEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213
L+ + DN+ A + + + LE + L A R GL + +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLSKLFTTRY 173
Query: 214 GKARQAFQRALQLDPENVEALVALAVMDLQANE 246
KAR + Q+ + P + EA L + E
Sbjct: 174 EKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 28/212 (13%)
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + GQ G+A F++ + L+ + E
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY---------------------YWTN 45
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ + LA + + + L P A +G
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRG 102
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD-FRSALTNFEKVLEIYPDNCET 378
+ A Y + ++ + + LG + + L K L
Sbjct: 103 QEKDALRMYEKIL-QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
G + + EKA+ L+K P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 5e-15
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175
Y+ + ++A +K +L+ +NV L A ++ R
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL-GKARQAFQRALQLDPENVEAL 234
G+ D+L Y++ LQ+ A + +G Y + K + + L + A
Sbjct: 102 GQEKDALRMYEKILQLEADNLAA-NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273
+ L K +Q+ +P
Sbjct: 161 YRDGLSKLFTTR---YEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 5e-11
Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 66/244 (27%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ + ++ GQ +A R+ ++ + + S
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS-------------- 50
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
E+ ++ + + + + ++ A+ +K+ L
Sbjct: 51 --------EISSKLATELALAYKKNRNYDKAYLFYKELL--------------------- 81
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
+ N+V+ L A + A +Y IL
Sbjct: 82 ---------------QKAPNNVD-------CLEACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 557 DYVDAYLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
D + A + L + +E + L K A G +L + KA+ +
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179
Query: 616 FRAA 619
+
Sbjct: 180 LQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 736
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 626
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 687 EKGQFD 692
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 722
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 723 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 781
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 782 SNYTLRFDAGVAMQK 796
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 16/253 (6%)
Query: 174 NRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ L ++ L + G+ LG AR F +AL + P+
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLL-YERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 230 NVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
E L + +AA E E+ P A ++ G+ L
Sbjct: 76 MPEVFNYLGIYLTQAGNFDAA-----YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
+ P L + + + + K + + +
Sbjct: 131 QDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG + + + + ET LG Y+ LG ++ A L + A +
Sbjct: 188 LGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 408 RDAQAFIDLGELL 420
+ L
Sbjct: 247 HNFVEHRYALLEL 259
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 8/275 (2%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L ++E Q + D +G L + G A + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L D G + + E + L++ P+ A L G+ Y G+
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGR 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
A+ Q DP + + L + + + +E + +++ + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
YL N ++ ++ S + + L + Y S GD + A + +V
Sbjct: 187 YLGN-ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
N H F+ + LG + L ++
Sbjct: 243 A--NNVHNFV-EHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 12/263 (4%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L + + + D + L + + + G + + + +AL + P
Sbjct: 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRK 252
P +G+ + G A +AF L+LDP A + +A+ ++ A
Sbjct: 76 MPEV-FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA---- 130
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
+ + ++ P +L + E L + + + L
Sbjct: 131 -QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ E+ + + + LG+ L LGD SA F+ +
Sbjct: 190 N-ISEQTLMERLKADATDNT-SLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 373 PDNCETLKALGHIYVQLGQIEKA 395
N + LGQ +
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 9e-17
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 9/176 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ Y Y S G A + ++ I + + LG + G+F +A
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR--PDMPEVFNYLGIYLTQAGNFDAA 96
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
F+ VLE+ P G G+ + AQ+ L + DP D + L
Sbjct: 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
D A + K +K+ +E V +G I E+ E D
Sbjct: 157 KLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNT 208
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 69/326 (21%)
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431
+ + L Q + + +++L A D AQ + G L +L
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLY------DSLGL 58
Query: 432 FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
AR +A P EV N +G+ + G F++A+++F L
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-------------- 104
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549
E D + N+ L+ R D
Sbjct: 105 ----------------------ELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LL 135
Query: 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIEL---VNEALKVNGKYPNALSMLGDLELKN 606
+ L L + + Q L ++ K + LG++ +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQ 194
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
+ K + S LG + L+ A L+
Sbjct: 195 TLMERLKADATDN-TSLAEHLSETNFYLGK-----YYLSLGD--------LDSATALFKL 240
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFD 692
+ + N A + L+ GQ
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 707 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 767 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 45/245 (18%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
I+ + + + +A + + AL+ DP+N A + A L+ N+ A E
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA-----QES 64
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
++A I P A N FL +L
Sbjct: 65 FRQALSIKPDSAEINNNYGW--------FLCGRL-------------------------- 90
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
++ Y+ ++ + P G K G F A ++ L P
Sbjct: 91 --NRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
K L + GQ+ A +K + LG I+ G A A++
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG-WKIAKALGNAQAAYEYEA 206
Query: 437 TLLKK 441
L
Sbjct: 207 QLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 405 IDPRDAQAFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
I P A+ + G L ++ F A L P N G+ ++G
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAKQG 127
Query: 463 EFESAHQSFKDAL 475
+F A K +L
Sbjct: 128 QFGLAEAYLKRSL 140
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 7e-14
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 14/173 (8%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA Y DY +A ++K P + + ++ L A +F +
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKS--DP-KNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 368 VLEIYPDNCETLKALGHI-YVQLGQIEKAQELLRKAAK--IDPRDAQAFIDLGELLISSD 424
L I PD+ E G +L + ++ KA P A ++ G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS---- 123
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A F A LK++ P + G+ A FK
Sbjct: 124 --AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 76 ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135
A+ + I L + Y AT A + D W+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYR-----------QATASIEDALKSDPKNELAWLVRA 49
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKRALQVH- 192
++ ++A +F+ L D+ G R ++S+ ++ +AL
Sbjct: 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPT 108
Query: 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251
P+ A L G+C K GQ G A +R+L P+ A LA + A + +
Sbjct: 109 YPTPYIA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LG 164
Query: 252 KGMEKMQRAFEIYPYCAMALNYLA 275
++ L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 26/219 (11%)
Query: 35 AEQAP--LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
AE+A ++ +A EY + Q +E+ + + D
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIED--ALKSDPKNELA-------WLVRAEI 51
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-GEVEQASSAF 151
Y YL + A + + +A I G L + ++ + F
Sbjct: 52 YQYLKVND-----------KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100
Query: 152 KIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
L A L + +G++ + + KR+L P P A + +
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF-KELARTKML 159
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
GQLG A F++ + L +A A
Sbjct: 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 614 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 674 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 731
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 732 LAMKMYQNCLRKFYYNTDAQILL 754
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 32/269 (11%), Positives = 61/269 (22%), Gaps = 85/269 (31%)
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E L Y++ +A + A K DP++ A+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW---------------- 45
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
I+ + A +SF+ AL
Sbjct: 46 ----------------------LVRAEIYQYLKVNDKAQESFRQAL-------------- 69
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLY 548
+ E + N L +++ + +
Sbjct: 70 ----------------------SIKPDSAE-------INNNYGWFLCGRLNRPAESMAYF 100
Query: 549 R--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
L Y A L + + L+ + +L ++P A L ++
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLG 635
A F+ + L LG
Sbjct: 161 GQLGDADYYFKKY-QSRVEVLQADDLLLG 188
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 84.0 bits (209), Expect = 1e-18
Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ Y + S+ G Y +A + + + + LG +K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVY-DAD-A-FDVDVALHLGIAYVKTGAVDRG 61
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
E+ L PDN + LG YVQ+ + + A LL K A+ +P + LG L
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL- 120
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L F A K A P +V I + + G E A FK A
Sbjct: 121 -----DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 43/210 (20%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ K G+ +A ++ D +V+ + L + + R E
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI----------AYVKTGAVDRGTE 63
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ ++A P L +Y Y+
Sbjct: 64 LL-ERSLADA-----------------------------PDNVKVATVLGLTYVQVQKYD 93
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A + E N P + LG LG F A+ +F+ L + P+ + +A+
Sbjct: 94 LAVPLLIKVA-EAN-P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
Y Q+G+ E+A +KA ++D +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 14/187 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
VYY G K + A + D + + G + G V++ +
Sbjct: 9 VYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ L DNV +Y ++ + + +P RLG+ L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DN 122
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
LG+ +A +F+ AL L P + A+A + +E A + ++A E+
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-----LPHFKKANELDEGA 177
Query: 268 AMALNYL 274
++ L +
Sbjct: 178 SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 8e-10
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ KG G QA + V +AD +V L G E +R+L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEA 247
P LG+ ++ + A + + +P N L V +L +
Sbjct: 71 DAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
A ++ + A + P +A + G+H
Sbjct: 129 A-----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 2e-18
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
P A +LN LAN G +L AL V P + ++ NLA +G ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEA 62
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
++Y +++ P F Y +G ++ D + AL + + ++I P + L
Sbjct: 63 LMHYKEAIRI--SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAG 443
I+ G I +A R A K+ P A+ +L L D + K +++
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
E+ N + +H F+ A
Sbjct: 180 EK------NRLPSVHPHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L I+ +Q EE A + Y KA + + +L +G++++A +K
Sbjct: 12 LNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ A +L+ Y RA+Q++P+ A + G
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-NLASIHKDSGN 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
+ +A +++ AL+L P+ +A LA E+M++ I
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHC---LQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 273 YLANHFFFT 281
+ H +
Sbjct: 184 LPSVHPHHS 192
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 45/243 (18%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ +L A ++ +G +++ Y++AL+V P A + + G+L +A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-HSNLASVLQQQGKLQEALMH 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
++ A+++ P +A + K M+ +Q A + Y A+ +N
Sbjct: 66 YKEAIRISPTFADAYSNMGN----------TLKEMQDVQGALQCY-TRAIQIN------- 107
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
P + ++ NLA + G+ +A Y ++K KP
Sbjct: 108 ----------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP- 142
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399
+F Y L + D+ +K++ I D E L ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGF 201
Query: 400 RKA 402
RKA
Sbjct: 202 RKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-13
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P + ++L LA + + I + + ++A E++P A A + LA+ G+
Sbjct: 4 SCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ A+ ++ PT + +Y N+ + D + A Y ++ +IN F +
Sbjct: 61 EALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QIN--PAFADAH 114
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + G+ A+ ++ L++ PD + L H + E ++K I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ S F+ A
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAI 205
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-12
Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 11/268 (4%)
Query: 80 YER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y + + + ++ L + +Q + +E A +Y +A RI + G L
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+V+ A + ++ + A A + + G +++ Y+ AL++ P P A
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ C + + ++ + + + +E +V + +
Sbjct: 148 -YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS----HGFR 202
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A H ++ +H +L +S
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGM 262
Query: 319 GDYEK-AGLYYMASVKEINKPHEFIFPY 345
+ +K Y S + +
Sbjct: 263 HNPDKFEVFCYALSPDDGTNFRVKVMAE 290
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-08
Identities = 60/454 (13%), Positives = 126/454 (27%), Gaps = 82/454 (18%)
Query: 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616
+ D+ LA I + + N++ ++ L +AL+V ++ A S L
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--------------- 51
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676
L+ + + L++A Y I +
Sbjct: 52 -------------------------VLQQQGK--------LQEALMHYKEAIRISPTFAD 78
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
A + G L E + +T+ + D NLA ++ GN A+
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIAS 133
Query: 737 YQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795
Y+ L+ D LA W D + + + + + V
Sbjct: 134 YRTALK---LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190
Query: 796 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 855
L R A R + ++ + K++ ++
Sbjct: 191 HSMLYPLSHGFRKAIAER-------HGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 856 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 915
H + + + E Y L + + ++
Sbjct: 244 SSDFGNHPTSHLMQS--------------IPGMHNPDKFEVFCYALSPDDGTNFRVKVMA 289
Query: 916 QEEHFQRVKEQWRSSTPASKRRERSENDD-DEVGHSEKRRRKGGKRRKKDKSSRSHYETE 974
+ HF + + + A + + + + G+++ R + R +
Sbjct: 290 EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPG 349
Query: 975 YAEADMMDYR---EEPEDEDASMNYREPIGQMND 1005
+ A MDY +E + + Y E + M
Sbjct: 350 TSGALFMDYIITDQETSPAEVAEQYSEKLAYMPH 383
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 5e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 627
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 628 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 46/332 (13%), Positives = 115/332 (34%), Gaps = 27/332 (8%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
++E ++ EE L Y R + ++ G+ + V + + +
Sbjct: 37 EVEQDIQQMEEDQDLLIYYSLMCFRHQLM--LDYLEPGKTYGNRPTVTELLETIETPQKK 94
Query: 158 DRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----IGLCRYKL 210
+ L + EF++ Y +++ +Y+ A + P I + Y +
Sbjct: 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154
Query: 211 GQLGKARQAFQRALQLDPENV--EALVALAVMDLQAN--EAAGIRKGMEKMQRAFEIY-- 264
Q + +AL + + ++ + N + K + ++ A E+
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 265 ----PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSK 318
+ A++L +AN + +G + + + A V+ + L+ +
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 319 GDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYP 373
G +KA + + + +K ++ +F + + + + L+ FEK ++
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ ++ E+A RK K
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 34/253 (13%), Positives = 86/253 (33%), Gaps = 22/253 (8%)
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
E + ME+ Q Y + ++ + +TE +
Sbjct: 36 AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95
Query: 305 SH-----SYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLG 356
+ S + + +Y +A YY + + ++ E ++ + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 357 DFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405
++ + + L+IY ++L + Y +KA L A ++
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 406 --DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
D A + +++ D A++ F+ A + ++ ++ +VL + + G
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 463 EFESAHQSFKDAL 475
+ + A Q ++ L
Sbjct: 276 QTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 46/366 (12%), Positives = 91/366 (24%), Gaps = 79/366 (21%)
Query: 43 WLIIAREYFKQGKVEQFRQILEE--GSSPEIDEYYADVRYERIAILNALGVYYTYLG--- 97
+L + Y + V + + +E + +YY+ L G+Y
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS---------LFFRGMYEFDQKEYV 118
Query: 98 -------KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ E + + A ++ A + Q ++ + QA
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQALDI 170
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GAIRLGIGL 205
++ + +L A + Y +L + AL++ L I
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ G A + FQ+A ++ E +
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREK--------------------------------VPD 258
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-----HGPTKSHSYYNLARSYHSKGD 320
L L+ GQ Q E L + + +
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y+ ++ N V F A + KVL+ E +
Sbjct: 319 IHDLLSYF----EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ----EDIL 370
Query: 381 ALGHIY 386
+Y
Sbjct: 371 KGECLY 376
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 593 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 647
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 648 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 708 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 758
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 759 THYEAEQWQDCKKSLLRAIHLA 780
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 3e-18
Identities = 47/324 (14%), Positives = 94/324 (29%), Gaps = 44/324 (13%)
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPS 194
+ + E+E+ + VL + + AL+ + YS +A+++ P
Sbjct: 76 KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV------MDLQANEAA 248
A +G +K G + A F AL N +L L++ D +
Sbjct: 136 LVEA-WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSR 193
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ + + + A ++ + L N + +
Sbjct: 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP------------------- 234
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++A Y + K K + + + AL F +
Sbjct: 235 ----------KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
+ P E + + L + LL K P+ Q+ + L + G
Sbjct: 285 AALDPAWPEPQQREQQLLEFLS---RLTSLLESKGKTKPKKLQSML---GSLRPAHLGPC 338
Query: 429 LDAFKTARTLLKKAGEEVPIEVLN 452
D + + K E P+ L
Sbjct: 339 GDGRYQSASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 4e-15
Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 19/190 (10%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ + ++ + DY ++ ++ + LG+V K GD SA
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSA 156
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKAAKIDPRDAQA 412
T F L + +L+ L + QL + + + A ++D D ++
Sbjct: 157 HTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 413 FIDLGELLIS--SDTGAALDAFKTARTLLKKAGEEVPI-----EVLNNIGVIHFEKGEFE 465
+ LG +S +TG + A + +A + ++ N +H + +
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 466 SAHQSFKDAL 475
A + F A
Sbjct: 276 EALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 8e-12
Identities = 49/325 (15%), Positives = 100/325 (30%), Gaps = 41/325 (12%)
Query: 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAIL 86
+ +L+ Q +D YF+ VE + ++ E+++ + E +
Sbjct: 42 EAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD-VQEEMEK--TLQQMEEVLGSA 98
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
GK + A +KA +++ W G++ KG+V
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPE---AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 147 ASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
A + F L ++ V L + + DS+ K A+Q+ +
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 199 -IRLGIGLCR------YKLGQLGKARQAFQRALQLD---PENVEALVALAVM--DLQANE 246
LG +A A+ +A ++D N + + A + ++
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
A +E +A + P L+E L+ + + G TK
Sbjct: 276 EA-----LEGFSQAAALDPAWPEPQQREQQ---------LLEFLSRLTSLLESKGKTKPK 321
Query: 307 SYYNLARSYHSKGDYEKAGLYYMAS 331
++ S Y ++
Sbjct: 322 KLQSMLGSLRPAHLGPCGDGRYQSA 346
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 9e-12
Identities = 58/377 (15%), Positives = 118/377 (31%), Gaps = 37/377 (9%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
SH +++ + +G + MAS+ + + + L + +
Sbjct: 4 SHHHHHHSSGLVPRGSH-------MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDR 56
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
+ Y + A ++EK + + + +AQA + G+ L
Sbjct: 57 LYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL---- 112
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGD----- 477
D A LL KA + P +E N +G ++++KG+ SAH F AL
Sbjct: 113 -NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Query: 478 -----GIWLTLL-DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VT 526
+ L L + S+ Q K + D W ++
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLS 225
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
+ FN + + ++A + K D +L A + K + ++E ++A
Sbjct: 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
++ +P L E+ + +L + R +
Sbjct: 286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQ 344
Query: 647 KRAPKLEATHLEKAKEL 663
+ + L+ L
Sbjct: 345 SASGQKMTLELKPLSTL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 548 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 665
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 717
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 638 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 694
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 749
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 750 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 784
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 3e-18
Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 22/240 (9%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYN 310
E + A ++ +++ Q + A + +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 311 LARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
A ++ YE A ++ + + +P Y +G + + A+ F++
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 368 VLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDL 416
+ ++ P + + I+ +LG+I+KA E K D F L
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
L +S +A + L+ + + ++ + E+ F+ A F
Sbjct: 310 KSLYLSGP---DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 45/345 (13%), Positives = 106/345 (30%), Gaps = 44/345 (12%)
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
+I+ + + EE L Y R ++ L + E + S +
Sbjct: 34 LRREIKQELDQMEEDQDLHLYYSLMEFRHNL----MLEYLEPLEKMRIEEQPRLSDLLLE 89
Query: 155 LEADRDNVPALL------GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----I 203
++ + + LL + E ++ Y +++F+K+A I +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
Y + Q + ++A ++ E + A +++ + A
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF-----ATNFLDLKQYEDAI 204
Query: 262 EIY-------------PYCAMALNYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKS 305
+ L + Q+ + A+A +N P+
Sbjct: 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264
Query: 306 HSYYNLARSYHSKGDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRS 360
+Y+ + + ++ G +KA Y+ MA ++ + + F + L +
Sbjct: 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
E +Y D + + Y + +KA K ++
Sbjct: 325 FFDFLES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 21/231 (9%)
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN---LARSYHSKGDYE 322
+ L YL + + T YY + +Y
Sbjct: 61 RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYL 120
Query: 323 KAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372
A ++ + + + E ++ + + + ++ + EIY
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLIS-SDT 425
+ ++ L Q E A +KA + + ++G S S
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 426 GAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
A+ FK A + +++ + + I IH++ G+ + AH+ +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 56/379 (14%), Positives = 118/379 (31%), Gaps = 62/379 (16%)
Query: 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA 88
+ + + + L L+ R +E ++ E P + + ++ ++ A L
Sbjct: 42 LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIE-EQPRLSDLLLEI-DKKQARLTG 99
Query: 89 LGVYYTYL--GKIETKQREKEEHFILATQYYNKASRIDMHEP-------------STWVG 133
L YY G E QRE A +++ KA + ++
Sbjct: 100 LLEYYFNFFRGMYELDQREYLS----AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY 155
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-- 191
Q + QA +K + + A + +Y D++ +++A +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215
Query: 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
P G IGLC+ Q A F+RA+ + E+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES------------------ 257
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPTKSHS 307
I P A + + G+ + +A + G S
Sbjct: 258 -------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +S + G E+A + ++ + + + + +F+ A F K
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 368 VLEIYPDNCETLKALGHIY 386
V ++ + ++ +Y
Sbjct: 365 VEQVR----QLIQGGVSLY 379
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 27/264 (10%)
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVN 589
L+Q+ + + Y L+ F++ ++ ++L L I+ L
Sbjct: 41 ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100
Query: 590 GKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNE 646
+Y G EL +++ A + F+ A + A + +
Sbjct: 101 LEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSESYYY 155
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ + +A E+Y + L + + Q++ + F +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS--- 212
Query: 707 GSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYL 756
+ N+ +Q + A+ ++ + F + Q +
Sbjct: 213 --MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 757 ARTHYEAEQWQDCKKSLLRAIHLA 780
+ HY+ + + + + +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 36/236 (15%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ GRY +L ++RAL+ +P P A + + KLG + A + + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEA-LYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 233 ALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291
+ L+ +A +G +++A +
Sbjct: 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVL--------------------------- 107
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351
+ A V P + + Y G+ +KA ++ + E L ++
Sbjct: 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPE---IRSALAEL 160
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L +G AL + K LE P + + + G+ E+A
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
L ++ G Y+ A + ++KE P + Y L + QLKLG AL N +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--NP-QDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 368 VLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDL 416
++ P L YV L G +E+A +L+ A +++PR A +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 417 GELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473
G + + G A + K A L E+ + + ++ G + A +
Sbjct: 125 GLVY--ALLGERDKAEASLKQALALEDTP------EIRSALAELYLSMGRLDEALAQYAK 176
Query: 474 AL 475
AL
Sbjct: 177 AL 178
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----------G 356
Y LAR+ G A V P ++ Y L + + L G
Sbjct: 42 LYWLARTQLKLGLVNPALENGKTLV-ART-PR-YLGGYMVLSEAYVALYRQAEDRERGKG 98
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
AL+ + + P G +Y LG+ +KA+ L++A ++ + L
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSAL 157
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 474
EL ++ A KA E+ P +++ KG+ E A ++
Sbjct: 158 AELY------LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211
Query: 475 L 475
Sbjct: 212 H 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
L Y L + + + + A A R++ + +G + GE ++
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ K L + D A + + GR ++L Y +AL+ P R+
Sbjct: 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL-RVRYASA 194
Query: 207 RYKLGQLGKARQAFQRALQLDP 228
G+ +A +A
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 31/211 (14%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LGV LG+ + A + +A + + +P + L G V
Sbjct: 9 LRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 147 ASSAFKIVLEADRDNVPAL--LGQA---------CVEFNRGRYSDSLEFYKRALQVHPSC 195
A K ++ + L +A E +G +L K A +V+P
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKG 253
L GL LG+ KA + ++AL L+ E ALA + + + A
Sbjct: 118 APL-HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA----- 170
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ + +A E P A+ G+
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKA 201
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 736 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A R + W+ L G+ A + L + A+ V
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ + R++++ ++A P PG +G GQ A A+ RA QL PE
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALW-LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
L + + + +++ A +L+
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
+ + + + + A L A E G + +R L +HP P A+
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA- 61
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+G R+ + +A Q+A PE+ + L D EAA R
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-----AAAYTR 116
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A ++ P L N ++ L+ A G + L+
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 6/140 (4%)
Query: 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340
T A+ P ++ LA + GD + + P
Sbjct: 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HP-G 55
Query: 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400
LG+V+ A ++ + P++ LGH GQ E A
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 401 KAAKIDPRDAQAFIDLGELL 420
+A ++ P + L
Sbjct: 116 RAHQLLPEEPYITAQLLNWR 135
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-13
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
D + L A+V+ +P + L +L +GD + ++ L ++P + E
Sbjct: 3 ADGPRELLQLRAAVRH--RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTART 437
+ LG + + +A LL++A+ P + LG L + AA A+ A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 438 L 438
L
Sbjct: 120 L 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 43/202 (21%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+ + A++ P++ A + LA +L + G +QR ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT---AGEMAVQRGLALHPGHPEA 59
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ L + +H L + A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDA--------------------------------- 86
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
P E LG G +A + + ++ P+ L + +L
Sbjct: 87 ------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 391 QIEKAQELLRKAAKIDPRDAQA 412
L + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
LA + DT A + + L + + +A RL + + + L+ +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
++P LG A + A
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 18/211 (8%), Positives = 39/211 (18%), Gaps = 81/211 (38%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--- 59
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ +G + + + A + A
Sbjct: 60 -----------------------------------VARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535
+ H + L L
Sbjct: 85 ------------------------------------DAAPEHPG-------IALWLGHAL 101
Query: 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566
E AA+ Y + +L
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%)
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833
+A AP + + G A L+ + A A ++ +
Sbjct: 81 QQASDAAPEHPGIALWLGHA--------LEDAGQAEA----AAAAYTRAHQLLPEEPYIT 128
Query: 834 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 893
L+ ++ + AA A + AA Q A A +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188
Query: 894 EEQKKYLLEKRKLEDEQKRLR 914
+ L R + LR
Sbjct: 189 AASVRPLAPTRV--RSKGPLR 207
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 728 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 23/233 (9%), Positives = 46/233 (19%), Gaps = 81/233 (34%)
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 449
+ LR A + P+D A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA------------------------------------- 25
Query: 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509
+ G+ + + + L
Sbjct: 26 -WLMLADAELGMGDTTAGEMAVQRGL---------------------------------- 50
Query: 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 569
H E + L R+ A+VL + ++ L L
Sbjct: 51 --ALHPGHPE-------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622
+ + + A ++ + P + L + + DW A
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 7e-17
Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 18/181 (9%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
T S + + L Y +++A + A ++ + +G V+ G++
Sbjct: 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 359 RSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----D 406
+A F + E+ + + + G + A++ K+ D
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 407 PRD-AQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGE 463
A AF LG+L + A + AR + + + + E++ + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Query: 464 F 464
Sbjct: 203 H 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 49/230 (21%)
Query: 180 DSLEFYKRALQV-----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
++ ++ Q HP+ R +G + + +AR +FQ Q
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------- 55
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
+ +G AL+ + G +
Sbjct: 56 ----------AQKSGDHTAE-------------HRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 295 LAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYG 347
+ S + Y +A GD A Y S+ ++ + + G
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQ 391
LG + + + A ++ + +I+ E + L +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRD 409
A + LG++Y + + ++A+ + + D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 410 -AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFE 465
+A +G + + AA F R LL E+ + + G+
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 466 SAHQSFKDAL 475
A Q ++ +L
Sbjct: 125 GARQEYEKSL 134
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 41/224 (18%)
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-----HPSCPGAIR 200
A + +L A V R+ ++ ++ Q +
Sbjct: 10 LAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+G+ G AR+ F +L +
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEEREL------------------LASLPEDPLAA----- 106
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHS 317
+ +A G Q E +L + + ++ L
Sbjct: 107 -------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159
Query: 318 KGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + +A +++ + E+ L ++
Sbjct: 160 EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG Y ++ + + A + + E G +
Sbjct: 27 GARFMLGYVYAFMDRFDE-----------ARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 138 LLAKGEVEQASSAFKIVLEADR---DNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G + A F E ++ A V + G + + + Y+++L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 191 VH-----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
G+G + L +A+Q + RA +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ G G+ + A F+ + D + LG + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y +L+ Y + + P C +LG L A F A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 237 LA 238
A
Sbjct: 126 AA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y L + + G ++ A + A ++ + + GLG + LG + A
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARY-FLGLGACRQSLGLYEQA 71
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
L ++ + + ++QLG ++ A+ A +
Sbjct: 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 5e-12
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y LG Q + G + A F+ + + + LG LG E+A + A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 405 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL 438
+D + + E + D A F +AR L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422
+ + D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
AL ++ + + H + G+ + A F A
Sbjct: 66 GLYEQALQSYSYGALMDINE-----PRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
++ D + L ++ G++ D+ + ++ + LG+G CR
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQS 64
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV 239
LG +A Q++ +D A
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAE 94
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
+ + L L + + G+ +++ + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQ 63
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G YE+A Y ++ + + L+LGD A + F +
Sbjct: 64 SLGLYEQALQSYSYGA-LMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 377 ETLKALGHIYVQLGQIEKAQE 397
L + ++
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 129
+ E + Y ALG GK + A + + +D ++
Sbjct: 12 GLSEDTLEQLY-------ALGFNQYQAGKWDD-----------AQKIFQALCMLDHYDAR 53
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
++G G + G EQA ++ D + A G + + A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 190 QVHPSCP 196
+ + P
Sbjct: 114 ALAAAQP 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQK 796
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 6e-15
Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 41/179 (22%)
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
++ NL +++ G++ A + + KE Y LG + LG+F +A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 363 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
++K L + ++ +LG+ Y L EKA + K
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-------------- 115
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L I+ + D R ++G + G + A + L
Sbjct: 116 --LAIAQELK---DRIGEGRA-------------CWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 324
A L N + G E L + + +Y NL +Y G++E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 325 GLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDN 375
YY + +++ Y LG L D+ A+ K L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ Y LG ++A K +I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G Y LG A A ++ L + + + A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLL--------------IAKEFGDKAAE------------ 48
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKG 319
+A + L N + F G+ + + L + ++ S Y+L +Y
Sbjct: 49 -----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 320 DYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
DYEKA Y++ +E+ + LG LG+ A+ EK LEI
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 43/172 (25%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGIGLCRYKLGQLGKARQAF 220
LG + G + D++ +++ L + + +G LG+ A + +
Sbjct: 15 LGNTH--YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
++ L L R A + L N +
Sbjct: 73 KKTLLL------------------ARQLKDRAVE-------------AQSCYSLGNTYTL 101
Query: 281 TGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+ LA+ + + + ++L +Y + G++++A +
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG + LG A + + I E + G
Sbjct: 10 RAFGNLGNTHYLLGNFRD-----------AVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 138 LLAKGEVEQASS----AFKIVLEA-DRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQV 191
+ GE E AS + + DR Y +++++ + L +
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 192 ------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL 226
+G LG +A ++ L++
Sbjct: 119 AQELKDRIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 1e-14
Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 15/270 (5%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
F G Y + +R P + + + G + + ++
Sbjct: 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQ 66
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
A+ A + I +++ + + L A+ +F+ +
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQNP-------D 118
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
AL + G + + + A + +++ ++ +
Sbjct: 119 AALRTLHQGDSLEC-MAMTVQILLKLDRLDLA-RKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F+++ + L ++ G+ E A+ +L++A D +
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 413 FIDLGELLISSDTGAALDAFKTARTLLKKA 442
I+L L G + + LK A
Sbjct: 237 LINLVVLSQ--HLGKPPEVTNRYLSQLKDA 264
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 18/233 (7%)
Query: 135 GQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192
+ L + + + + D N LL A + F +L + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
KL +L AR+ ++ D + +A A + L A ++
Sbjct: 132 C------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQD 184
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
Q + + LN A G+ E + + AL + NL
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHPETLINLV 241
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
G + Y++ +K+ ++ H FI + + K DF + +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 14/244 (5%)
Query: 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD 77
A + + +I + L + A + + L+ S +D
Sbjct: 43 AYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 78 VRYERIAILNALGVYYTYLGKIETKQR-----------EKEEHFILATQYYNKASRIDMH 126
+I L + K + LA + K D
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 127 EPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184
T + + LA G +++ A F+ + + + L GQA +GR+ +
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244
+ AL P + + L ++ + + + + +
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PFIKEYRAKENDF 281
Query: 245 NEAA 248
+
Sbjct: 282 DRLV 285
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 8e-09
Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 8/169 (4%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ A S + + + + + + +AL
Sbjct: 67 AVRMFAEYLASHSRRDAI-VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + I ++L +++ A++ L+K D + + +++
Sbjct: 126 QGDSLECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
DA+ + + K + +LN H +G +E+A ++AL
Sbjct: 181 KLQDAYYIFQEMADKCSPTL--LLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+G ++ + ++V P+ E L Y+ + + ++ + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL 65
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470
QA E L + + ++ + L I+F ++A ++
Sbjct: 66 QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530
+ I L +L + D + +
Sbjct: 124 LHQGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDATLTQLAT--AWVS 174
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
LA E++ D A +++ + K + AA A+ + + ++ EAL +
Sbjct: 175 LAAGGEKLQD---AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAA 619
+P L L L + + +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 56/278 (20%), Positives = 90/278 (32%), Gaps = 55/278 (19%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++ K+AL+ HP A L + L + +A AL
Sbjct: 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 225 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 265
+ P L LAV + A E + +RA EI P
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKFHP 124
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 319
A LN LA G+ VE AL + + P + + NLA Y +G
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-PNVAKTKNNLASCYLKQG 183
Query: 320 DYEKAGLYYMASVKEINK-----PHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEI-- 371
Y+ A Y + ++ + P + + + R + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 372 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
P TL++LG +Y + G++E A L A++
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 39/201 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFP-YYGLGQVQLKLGDFRS 360
S ++ A ++ E + H + L V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61
Query: 361 ALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------ 406
A L I P TL L +Y + G+ ++A+ L ++A +I
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 407 --PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA--------GEEVP--IEVLNNI 454
P A+ +L L + + ++A G + P + NN+
Sbjct: 122 FHPDVAKQLNNLALLCQN------QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175
Query: 455 GVIHFEKGEFESAHQSFKDAL 475
+ ++G+++ A +K+ L
Sbjct: 176 ASCYLKQGKYQDAETLYKEIL 196
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
I + + I KG +E+A F+ + D N
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
V ++G A + + ++ + + Y A + + + G C+ +L KA++ F+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECFE 128
Query: 222 RALQLDPENVEALVALAVMDL 242
+Q + + A + +D
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
Y+ A +++KG E+A +++ + + GL + F+ A +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDY-IMGLAAIYQIKEQFQQAADLYAV 95
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ ++ + G ++L KA+E + +
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTA 435
+ D G+ + A + F+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + D ++ + + I D + + + + + G+IE+A+ R D
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 408 RDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 466
+ + L + A D + A L K + + G
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----YTPVFHTGQCQLRLKAPLK 122
Query: 467 AHQSFKDAL 475
A + F+ +
Sbjct: 123 AKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV----TNHGPTKSHSYYNLA 312
++ I + A F+ G+ E A + LA
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRI-------EEAEVFFRFLCIYDFYNVDYIMGLA 77
Query: 313 RSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
Y K +++A LY +A N P + GQ QL+L A FE V++
Sbjct: 78 AIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 372 YPDNCETLKA 381
D +KA
Sbjct: 134 SNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 30/170 (17%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + + PH I + +G + L + A F
Sbjct: 8 SLWNEGVLAADKKDWKGA----LDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGELLISSDT 425
+ + G +Y Q + + A + L++A + + LG
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Query: 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
EVL NI ++ +K E++ A + A
Sbjct: 122 -----------------------EVLYNIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + +A + S+ +K Y+ G + + + A
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK--HLAVAYFQRGMLYYQTEKYDLA 90
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 151 KSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 77/241 (31%)
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ + +L+ + H I IG L + +A +AF R++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
A + + EK A + AL L +
Sbjct: 68 KHLAVAYFQRGM----------LYYQTEKYDLAIKDL---KEALIQLRGNQLI------- 107
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
DY+ GL + E+ Y
Sbjct: 108 --------------------------------DYKILGLQFKLFACEV---------LYN 126
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + K +++ A + + + +I+KA E + K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 408 R 408
Sbjct: 175 V 175
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 145
L GV + A ++ G + +
Sbjct: 9 LWNEGVLAADKKDWKG-----------ALDAFSAVQDPH---SRICFNIGCMYTILKNMT 54
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--IRLGI 203
+A AF + D+ A + + + +Y +++ K AL LG+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 204 -------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
K + KA + A + E + + A+ +
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ S + +A L + A ++ + E + LG Q + A+
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA---WRSLGLTQAENEKDGLAIIALN 75
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ P + AL + A LR P+ Q
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 435
A L A +DP+D L + AAL + +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 7e-11
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
+ + +++ ++ Q P A +GL + + + G A A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIAL 74
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
A LDP+++ ALAV + A + ++ P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNAN---AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ +G +L + +A+ AF+ V + + + A + + ++ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P + + A + + L P+
Sbjct: 80 LDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 11/81 (13%), Positives = 20/81 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + + + W G + A A D ++ A
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 173 FNRGRYSDSLEFYKRALQVHP 193
N + +L + L P
Sbjct: 96 TNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
GL KL L +A AF+ Q +PE EA +L + + + + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARM 79
Query: 263 IYPYCAMALNYLANHFFFTGQH 284
+ P LA
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNA 101
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 776
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 777 IHLAPSNYTLRFDAGVA 793
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 5e-14
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+DPR A+A+ +LG + A +KA E P E N+G ++++G
Sbjct: 64 LDPRSAEAWYNLGNAY------YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 463 EFESAHQSFKDAL 475
+++ A + ++ AL
Sbjct: 118 DYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 3e-11
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRS 360
P + ++YNL +Y+ +GDY++A YY K + P +Y LG K GD+
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDP-RSAEAWYNLGNAYYKQGDYDE 87
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ ++K LE+ P + E LG+ Y + G ++A E +KA ++DP
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 1e-09
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LG Y G + A +YY KA +D W G +G+ ++
Sbjct: 5 YNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ LE D + A + +G Y +++E+Y++AL++ P A +G
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNA 112
Query: 207 RYKLGQLGKARQAFQRALQLDPEN 230
YK G +A + +Q+AL+LDP +
Sbjct: 113 YYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 4e-08
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G YK G +A + +Q+AL+LDP + EA L A E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----------AYYKQGDYDEAIE 56
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
Y A+ L+ P + ++YNL +Y+ +GDY+
Sbjct: 57 YY-QKALELD-----------------------------PRSAEAWYNLGNAYYKQGDYD 86
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+A YY ++ E+ P +Y LG K GD+ A+ ++K LE+ P +
Sbjct: 87 EAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 5e-13
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ I G E A F+ + D + LG
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
G+Y ++ Y + P C + G+L +A A +L
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP-FHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 230 NVEALVALA 238
E
Sbjct: 122 XPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 8e-12
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G G A + EI+ + + Y L Q + G + A F+ + + +
Sbjct: 1 GPLGSGGGTI-AMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTART 437
LG +GQ + A A +D + + E L+ + A A+
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Query: 438 L 438
L
Sbjct: 118 L 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-11
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + ++ E D + L A ++ G Y D+ ++ + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-L 59
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
G+G CR +GQ A ++ +D A LQ E + + + A
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116
Query: 262 EIYP 265
E+
Sbjct: 117 ELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y+LA + + G YE A + A ++ H + GLG + +G + A
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLD--HYDSRFFLGLGACRQAMGQYDLA 74
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ ++ + +Q G++ +A+ L A ++ +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 43/188 (22%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G LG ++ + +E L +LA Q + A ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----------SGXYEDAHXVF-QALCV 49
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
L+ S + L + G Y+ A Y
Sbjct: 50 LD-----------------------------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
++ + + L+ G+ A + E+ + E + + L
Sbjct: 81 GA-VMDIXEPR--FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Query: 391 QIEKAQEL 398
I+ +E+
Sbjct: 138 AIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 38/120 (31%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
G S + EI D E L +L Q G E A + + +D D++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--- 57
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+G G+++ A S+
Sbjct: 58 -----------------------------------FLGLGACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 776
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 777 IHLAPS 782
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + L+ +A ++ G E F+ + +D Y + A
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACR 65
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A+G Y LA Y+ + +D+ EP + LL GE+ +
Sbjct: 66 QAMGQYD------------------LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE 107
Query: 147 ASSAFKIVLEADRD 160
A S + E +
Sbjct: 108 AESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 58/311 (18%), Positives = 93/311 (29%), Gaps = 80/311 (25%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++GRY ++ K+AL+ HP A L + L + A AL
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY----PYCAMALNYLANHFFF 280
IR+ + P A LN LA +
Sbjct: 97 A------------------------IRE---------KTLGKDHPAVAATLNNLAVLYGK 123
Query: 281 TGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
G++ E L + AL + +H P + NLA ++G YE+ YY ++ E
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-E 181
Query: 335 INK-------PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---------PDNCET 378
I + P+ L LK G F+ A T ++++L +N
Sbjct: 182 IYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLIS-SDTGAALDA 431
G+ + P +LG L AA
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 432 FKTARTLLKKA 442
+ A K+
Sbjct: 301 EEAAMRSRKQG 311
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 8e-13
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A +LG
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 1e-10
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
E +KA ++DP +A+A+ N+G
Sbjct: 64 EYYQKALELDPNNAEAW--------------------------------------YNLGN 85
Query: 457 IHFEKGEFESAHQSFKDAL 475
++++G+++ A + ++ AL
Sbjct: 86 AYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 1e-07
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 72 LDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 52/281 (18%)
Query: 176 GRYSDSLEFYKRA--------LQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQ 225
+ S++ E +A ++ P A + QL +A+ A+ + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
N A +A + K +++M A + +
Sbjct: 65 AHANNRSLFHAAKAF----EQAGMMLKDLQRMPEAVQYIEKAS----------------- 103
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFI 342
+ V N P + + A D KA Y A + + +
Sbjct: 104 --------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
++ ++ F A + +K +Y P + A + + AQ
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 397 ELLRKAAKI----DPRDAQAFIDLGELLISSDTGAALDAFK 433
+ +R++ I D A DL + D L +
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQEL 398
Y A + + E + +N + G + L ++ +A +
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 399 LRKAAKI-----DPRD-AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVL 451
+ KA+ + P A A G+L+ D A+ ++ A + + E++
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492
+ + +F+ A S + + + K +
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 49/283 (17%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF-NRGRYSDSLEFYKRALQVH 192
+ +AK E +S K + D D+ + +A V F N + + + Y + + H
Sbjct: 9 EAHEHIAKAEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 193 PSCPGAIRLG-----IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-- 245
+ G+ L ++ +A Q ++A + EN A +D
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305
E + K + Q+A ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFEN-------------------------------EERLRQAA 155
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+R + +++A E+ VQL D+ +A
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 363 TNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRK 401
+ I ++C L+ L Y E+ + R
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 607
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 668 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 720
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 721 AHVYFAQGNFALAMKMYQNCL 741
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 403 AKIDPR--DAQAFIDLGELL 420
++ + +L +
Sbjct: 68 IEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-09
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + Y LA+ + + +A + V+ P +++ YY LG++ +L A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDA 60
Query: 362 LTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQ 396
+ + + +E+ + + L L ++ +E
Sbjct: 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDA 431
P++ T AL +++ +A L + + DP + LG+L T A+D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469
+ + ++ G + L+ + + E H
Sbjct: 64 YAQGIEVAREEGT---QKDLSELQDAKLKAEGLEHHHH 98
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
++ A S +L ++ ++ P G +G +L + A
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDT 63
Query: 220 FQRALQLDPENVEA 233
+ + +++ E
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 7e-12
Identities = 47/349 (13%), Positives = 97/349 (27%), Gaps = 60/349 (17%)
Query: 156 EADRDNVPALLGQ-----ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR----LGIGLC 206
E + + A V N G ++ K AL+ P R +G
Sbjct: 3 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
+ G+L ++ Q+ +M R +++ Y
Sbjct: 63 LHCKGELTRSLALMQQTE-------------------------------QMARQHDVWHY 91
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDY 321
+L + F G + E A + P A+ +
Sbjct: 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151
Query: 322 EKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---- 375
++A + ++ ++ P + + L Q L GD +A + ++ + +
Sbjct: 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211
Query: 376 ---CETLKALGHIYVQLGQIEKAQELLRKAAKID----PRDAQAFIDLGELLISS-DTGA 427
K + G A LR AK + + ++ I +
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 428 ALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A + + L + ++++ G A + DAL
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 51/308 (16%), Positives = 105/308 (34%), Gaps = 50/308 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRA 188
G++L KGE+ ++ + + + R + + +L+ Q+ + F +G + E ++A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 189 LQVH-----PSCPGAIRLGIGLCR--YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
Q+ P L + + +L +A + + +++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV--------------- 164
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
+ Q ++ + LA + L +L H
Sbjct: 165 ------------LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLLGNGKYHS 211
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRS 360
S++ + GD A + + K + F+ + + + Q+ LG+F
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQA 412
A E++ E D L L +Y Q G+ AQ +L A K+ R
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 331
Query: 413 FIDLGELL 420
F+ GE +
Sbjct: 332 FVIEGEAM 339
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 565 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 619
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 620 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 740 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 778
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-11
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ + L + + P N E LG Y+ + R+A ++ +A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 412 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 469
+ L +L + R ++ KA I L + F + + A +
Sbjct: 80 LYAALATVLYYQASQHMTAQ---TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 470 SFKDAL 475
++ +
Sbjct: 137 LWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q R + W G+ L + + + A++ L+ +N A V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 173 F---NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ ++ + + +AL + + A + + + +A + +Q+ + L+
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITA-LMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Query: 230 NVEALVALAVMDL 242
+ + +++
Sbjct: 148 RINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197
++ E A + + A+ N + YS+SL Y++ALQ+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA- 78
Query: 198 AIRLGIGLCRYKLGQ---LGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + Y + R +AL LD + AL+ LA
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 19/126 (15%), Positives = 35/126 (27%)
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E + P S + L Y + DY + L Y +++ + E
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ Q +K L + + L L +A EL +K ++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 407 PRDAQA 412
Sbjct: 146 SPRINR 151
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215
+A R ++ L+ + ++ +P L +G
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWAL-LGEYYLWQNDYSN 62
Query: 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ A+++ALQL EN E ALA + + + +A + AL LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 276 NHFFFTGQH 284
+ F +
Sbjct: 123 SDAFMQANY 131
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQAS 148
+ LG+ Q + + Y +A ++ + +L + Q
Sbjct: 46 QWALLGEYYLWQNDYSN----SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L D + + AL+ A F + Y+ ++E +++ + ++
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G +A YY ++ + + Y GLG LG++R A ++ +P++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ LG+ E+ ELL K D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 355 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 412 AFIDLGELL 420
+ +L
Sbjct: 63 LRVFYAMVL 71
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G + ++ +Y++A+ LG+G LG+ KA ++ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 234 LVALAV 239
V A+
Sbjct: 64 RVFYAM 69
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 113 ATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
A YY KA + ++G G GE +A + ++ ++ + A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPG 197
V +N GRY +E + +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ ++E A +Y ++ E+N P ++ + KLG++ A
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELN-PANAVY-FCNRAAAYSKLGNYAGA 65
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
+ + E+ + I P + +G L + +A +KA ++DP + +L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + N A +Y G+Y A ++ I+ + Y +G L A
Sbjct: 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP--AYSKAYGRMGLALSSLNKHVEA 99
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ ++K LE+ PDN L ++L +
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
S D E +G + E A + +E + N +A G Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+ +++ +RA+ + P+ A R+G L L + +A +++AL+LDP+N L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMG--LALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 238 AVMDLQANEA 247
+ +L+ EA
Sbjct: 121 KIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K E+F A +Y KA ++ + + G A + + D A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ ++ +++ +YK+AL++ P + + + KL +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETY-KSNLKIAELKLRE 129
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 405 IDPR--DAQAFIDLGELLISSDTGAALDAFK 433
D Q +L L AL+
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
E +L DN LG Y + Q + A LR A DP + A+ LG+ L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 421 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
D A A+++ L A +V+ + V
Sbjct: 64 QGQGDRAGARQAWESG---LAAAQSRGDQQVVKELQV 97
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
++ + + +L DN+ ++ +L + AL P+ A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWL 59
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G G ARQA++ L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQAC 170
T+ G+ + + A + L+ D A LG+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 171 VEFNRGRYSDSLEFYKRALQVHPS 194
+G + + + ++ L S
Sbjct: 64 QG--QGDRAGARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
E + L R +G + Q A + AL DP A L
Sbjct: 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 5e-10
Identities = 106/756 (14%), Positives = 206/756 (27%), Gaps = 279/756 (36%)
Query: 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA 84
D D+ D+ K+ I+++ E+ I+
Sbjct: 34 DCKDVQDMPKS---------ILSK--------EEIDHIIMSKD-----------AVSGTL 65
Query: 85 ILNALGVYYTYLGKIETKQREKEEHFI---LATQYYNKASRI--DMHEPSTWVGKGQLLL 139
L + +KQ E + F+ L Y S I + +PS ++
Sbjct: 66 RL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MM 108
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +EQ + + NV R + L ++AL +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVS-----------RLQPYLKL---RQALL-------EL 147
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
R + + GK + + ++ M+
Sbjct: 148 RPAKNVLIDGVLGSGKT----------------WVALDVCLSY------KVQCKMD---- 181
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
F+I+ +L E + E + Y + ++ S+
Sbjct: 182 -FKIF--------WLN-----LKNCNSPETVLEMLQKL----------LYQIDPNWTSRS 217
Query: 320 DYEKAGLYYMASVKE------INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
D+ + S++ +KP+E L L L + ++A K +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYE-----NCL----LVLLNVQNA-----KAWNAFN 263
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL----LISSDTGAAL 429
+C+ L + R Q L + L
Sbjct: 264 LSCKIL-------------------------LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 430 DAFKTARTLLKKAG---EEVPIEVLNN----IGVIHFEKGEFESAHQSFKDALGDGI--- 479
+ LLK +++P EVL + +I E + DG+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII----AES----------IRDGLATW 344
Query: 480 --WLTLLDSKTKTYVIDASASMLQFKDMQ-LFHR---FENDGNHVELP-------WNKVT 526
W + K T +I++S ++L+ + + +F R F +P W V
Sbjct: 345 DNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVI 400
Query: 527 VLFNLARLLEQIHDTVAASVLYRLIL-----FKYQDYVDAYLRLAAIAKARNNLQLSIEL 581
+ V Y L+ YL L K N L +
Sbjct: 401 K--------SDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELK--VKLENEYALHRSI 449
Query: 582 VN-----EALKVNGKYPNALSM---------LGDLELK-----------NDDWVKAKETF 616
V+ + + P L L ++E + +++ K
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--I 507
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-------V 669
R S A + S N L+ K ++ Y R++
Sbjct: 508 RHDSTAWNASGSIL-------NTLQQLKFYKP-------YICDNDPKYERLVNAILDFLP 553
Query: 670 QHTSNLYAANGAGVV---LAEKGQFDVSKDLFTQVQ 702
+ NL + ++ L + + + ++ QVQ
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 6e-06
Identities = 86/601 (14%), Positives = 156/601 (25%), Gaps = 203/601 (33%)
Query: 548 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 591
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 592 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 648
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 649 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 705
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 706 SGSVFVQMPDVWINLAHV--------------YFAQGNFA-------------------- 731
+F W+NL + Y N+
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 732 ---LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ----DCKKSLLRAIHLAPSNY 784
L K Y+NCL ++L A+ W C K LL
Sbjct: 235 RRLLKSKPYENCL----------LVL---LNVQNAKAWNAFNLSC-KILL---------- 270
Query: 785 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK 844
T R V S T + D T+ E + L D +
Sbjct: 271 TTR-FKQVT---DFLSAATTTHISLDHHSMTLTPDE-VKSLL-----LKYLDCRPQDLPR 320
Query: 845 INTHVEYCKHL-----LDAAKIHREAA--EREEQQNRQRQEAARQAALAEEARRKAEEQK 897
E + A I A + + N + +++L AE +K
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373
Query: 898 KY---------------LLEKRKLEDEQKRLRQQEEHFQR---VKEQWRSST---PASKR 936
+ LL + + + + V++Q + ST P+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 937 RERSENDDDEVGHS---EKRRRKGGKRRKKDKSSRS--------------H-YETEYAEA 978
+ + +++ H + + D H E+ E
Sbjct: 434 ELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 979 DMM------DYR---------EEPEDEDASM--------NYREPIGQMNDQDDDVEENAN 1015
+ D+R + S+ Y+ I D D E N
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVN 546
Query: 1016 D 1016
Sbjct: 547 A 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 9e-05
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 82/301 (27%)
Query: 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAR--------EYFKQGKVEQFRQILEEG 66
+ LPR+ P L +I + +K ++ I+E
Sbjct: 311 LDCRPQDLPREVLTT--------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 67 SSPEI---DEYYADVRYERIAILNA--------LGVYYTYLGKIETKQREKEEHFILATQ 115
SS + EY ++R+++ L + + + K + + H +
Sbjct: 361 SSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---------------D 160
K S I + L K ++E + + +++ D
Sbjct: 419 KQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 161 N----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
+ F R + D F ++ ++ H S I L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLD-FRFLEQKIR-HDSTAWNASGSI---LNTL 524
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMD-LQANEAAGIR-KGMEKMQRAF-----EI 263
QL + DP+ E LV A++D L E I K + ++ A I
Sbjct: 525 QQLKFYKPYICDN---DPKY-ERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 264 Y 264
+
Sbjct: 580 F 580
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 7e-10
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ E+ E+ T ++ Y G Y +A + Y V +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 339 HEF------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---G 383
+ + + L LKL ++ A+ +K L + N K L G
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRG 358
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + E A+ K +++P++ A
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K ++ A Y K E + +AS +F + A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYG----------LSEKESKASESFLL---------AAF 320
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y+ ++E +AL + + + R G + + + A+ F++ L
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG--EAQLLMNEFESAKGDFEKVL 378
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGM-EKM 257
+++P+N A + +++ +A E + + M
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-04
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y ++ Y + + G A L + +C KL + KA +
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 219 AFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+AL LD N + L A + + E+A ++ E+ P A ++
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESA-----KGDFEKVLEVNPQNKAARLQISM 393
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 9e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELL 420
E +KA ++DP +A+A +LG
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAK 87
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G Y +++E+Y++AL++ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 2e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
YY + G+Y ++ + ++ +++ P E + G+ L + A+ +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-P-EESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 368 VLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V+ + D N + A + E E+ AK++
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182
+ P + +G L G ++ F+ ++ D + L + +N RY +++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 183 EFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+ Y + V + + + + +L+ +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 6e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 405 I--DPRDAQAFIDLGELL 420
+ D + + + L
Sbjct: 69 VIEDEYNKDVWAAKADAL 86
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---A 427
+ N E G + G ++ +L KA ++DP +++ ++ G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEE 58
Query: 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A+D + + +E +V E + +
Sbjct: 59 AVDCYNYV---INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P +S + ++ ++ YE+A Y + + + + +
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 362 LTNFEKVLEIYPDN 375
E ++ +
Sbjct: 96 AEIAEARAKLEHHH 109
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP--------------YYGLGQVQLKLGDFRS 360
+ E+A Y ++ + F + + +KL +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 361 ALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A+ + VL N KAL G +LGQ++ A++ RKA K P D
Sbjct: 249 AIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
K++ KEE A Q Y A ++G + G+ + + A K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKNPC-- 232
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKA 216
L A RY +++ L P A+ R G + +LGQ+ A
Sbjct: 233 -------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG--KAKAELGQMDSA 283
Query: 217 RQAFQRALQLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
R F++A + P++ L + + + ++ + +
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 22/151 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
EK++ A + Y MA+ Y+ + F F + N+A
Sbjct: 193 EKLEEAMQQY---EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL----------NIAAC 239
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y++A + + V + + + G+ + +LG SA +F K + PD
Sbjct: 240 LIKLKRYDEA-IGHCNIVLTEEEKNPKA--LFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + L + E+ + L +K ++
Sbjct: 297 DKAIRRELRAL------AEQEKALYQKQKEM 321
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEF-----------IFPYYG-LGQVQLKLGDFRSAL 362
Y +G Y++A L Y V + F + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 363 TNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K LE+ +N K L G ++ + E A+ +K ++ P + A
Sbjct: 217 ESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KE + A Y K +E S E Q + A ++
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFS----------NEEAQKAQALRLAS---------H 199
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A +S ++E +AL++ + + R G + AR FQ+ L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG--EAHLAVNDFELARADFQKVL 257
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
QL P N A LA + A +K M
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y +L YK+ + A L + +C KL A +
Sbjct: 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217
Query: 219 AFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+ +AL+LD N + L A + + E A Q+ ++YP A LA
Sbjct: 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELA-----RADFQKVLQLYPNNKAAKTQLAV 272
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 12/236 (5%)
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ L + R KL + + N A+ + L +
Sbjct: 115 KTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLS--K 172
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
A + +I P+ L A+ + G + + +E + P
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF 232
Query: 305 SHSYYNLARSYHSKGDYE-------KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+++ A + A + ++ + + + Y L G
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+ +++ + LG +Y G +A + A + P +
Sbjct: 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 12/156 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL--------LAKG 142
+ + + ++ A++ + + K + L +
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 143 EVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
++ ++ ++ N +++ +A +G+ +S + + + S +
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
LG G +A A+ A L P
Sbjct: 316 LGKVY--EMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)
Query: 366 EKVLEIYPDNCETLKAL--GHIYVQLG---QIEKAQELLRKAAKIDPRDAQAFIDLGE-- 418
E + +I P L H Y+ G + +A ELL + + P A +
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243
Query: 419 LLISSDTGAALDAFKTARTLLKKAGEEVPI----EVLNNIGVIHFEKGEFESAHQSFKDA 474
++ S T + + + V KG+ + ++Q+
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Query: 475 L 475
+
Sbjct: 304 I 304
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP-------------YYGLGQVQLKLGDFRSA 361
+ K + +A + Y ++ E+ L K D+ A
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107
Query: 362 LTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + KVL+I +N +KAL G + G +E+A+E L KAA ++P +
Sbjct: 108 IDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKAR 217
F + ++++ YK AL + L + C K KA
Sbjct: 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108
Query: 218 QAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ L++D NV+AL +A M E A E + +A + P N
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEA-----KENLYKAASLNPNNLDIRNSYE 163
Query: 276 N 276
Sbjct: 164 L 164
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K+ A Y +A +H + +I
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNIEISC---------N 91
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y +++ + L++ + A+ +LG + G L +A++ +A
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG--VANMYFGFLEEAKENLYKAA 149
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
L+P N++ + ++ + M
Sbjct: 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+N + + +L + + + D+EKA ++Y ++ E++ P F Y V +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELD-PSNITF-YNNKAAVYFEEKK 57
Query: 358 FRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
F + EK +E+ + K G+ + + + A + ++
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
P+ Y N A Y + + + + +V E+ + + G K
Sbjct: 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN 97
Query: 357 DFRSALTNFEKVLEIYPDNCETLKAL 382
D A+ F + L + D E +K +
Sbjct: 98 DLSLAVQWFHRSLSEFRDP-ELVKKV 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G + + E+A + +E D N+ +A V F ++++ ++F ++A++V
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
+L G K L A Q F R+L +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP---------------YYGLGQVQLKLGDFR 359
+ DY++A Y ++ ++ P Y + Q L +GD
Sbjct: 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH 80
Query: 360 SALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A +VL+ N KAL + ++++A+E L+ + P A
Sbjct: 81 EAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A Y A L + + +E DR N+P
Sbjct: 23 VQKDYKEAIDAYRDA----------------LTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
+ N G ++ E L+ + A+ R R +L +A + + L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA--KARIAAWKLDEAEEDLKLLL 124
Query: 225 QLDPENVEALVAL--AVMDLQANEAAGIRKGMEKM 257
+ P + V + +A + A R KM
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEK 367
YN+A G Y+ A +++ ++ + Y LG+ +F+ A F
Sbjct: 6 YNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64
Query: 368 VLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
++ YP + L LG G+ +AQ+ L++ A P A
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--------YYGLGQVQLKLGDF 358
+ Y L SY++ +++ A + V +P LG Q G
Sbjct: 41 ALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 359 RSALTNFEKVLEIYPDNCETLKA 381
A ++V YP + A
Sbjct: 93 TEAQQTLQQVATQYPGSDAARVA 115
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 37/324 (11%)
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYTL--RFDAGVAMQKFSASTLQKT 805
I +L R Y + + ++ R + H A T R A + +QKF +
Sbjct: 776 KTIRGWLMRKKYM--RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ--RMYVV 831
Query: 806 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREA 865
R+ +R L+ +R + N + E K ++ + L HR
Sbjct: 832 RKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 866 AEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 922
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + ++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEYKS 946
Query: 923 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMD 982
+ E+ + +++ +R R + K + + E A+
Sbjct: 947 LLEKMN------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR--- 997
Query: 983 YREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRR 1042
+E + + E + + + + ++ E + RR
Sbjct: 998 -KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE-----------LNRR 1045
Query: 1043 RALSESDDDEPFERQLRDNTDELQ 1066
+ E E++L + T +L+
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLE 1069
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 858 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 908
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 909 EQKRLRQQEEHFQR 922
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 859 AKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEE 918
A+ R E E + + ++ R L ++ +E ++ + +K +E ++Q E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWN--QRQSE 129
Query: 919 HFQRVKEQWRSSTPASKRRERSENDDD 945
++ K R + + + D D
Sbjct: 130 QVEKNKINNR----IADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 871 QQNRQRQEAARQAALAEEARRK-AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 929
Q +R QE E+ RK EEQ+K RL++ + + ++++WR
Sbjct: 76 QADRLTQEP--------ESIRKWREEQRK-------------RLQELDAASKVMEQEWRE 114
Query: 930 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 974
+ + + ++ SE+ + R DK+ + +
Sbjct: 115 -------KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 22/188 (11%)
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL--------------- 112
+ + DV A+L ++ +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 113 --ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170
Y W + L+ + Q +L D N A +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 171 VEFNRGRYSDSLEFYKRALQVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQ 225
V + + L++ + L+ + L + Q ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 226 LDPENVEA 233
L P N A
Sbjct: 269 LVPHNESA 276
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 14/142 (9%), Positives = 41/142 (28%), Gaps = 4/142 (2%)
Query: 302 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S + D + Y A ++E K ++ ++ + L D
Sbjct: 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ 184
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L +L N + + + + + + + K D R+ + ++
Sbjct: 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
Query: 421 ISSDTGAALDAFKTARTLLKKA 442
++ + +
Sbjct: 245 SNTTGYNDRAVLEREVQYTLEM 266
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ ++GD E A ++ +P YY +G KLGD++ AL N++
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 368 VLEIYPDN 375
+E+ PD+
Sbjct: 61 AIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 412 AF 413
Sbjct: 71 LQ 72
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + N KGDY +A +Y ++ + N P + Y KL +F+ A
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRN-PKDAKL-YSNRAACYTKLLEFQLA 69
Query: 362 LTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
L + E+ +++ P +K + KA ++ +KA +D +A
Sbjct: 70 LKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 419 LL 420
+
Sbjct: 127 CM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174
+++ S ++ KG KG+ QA + ++ + + +A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 175 RGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +L+ + +Q+ P+ R + KA +Q+AL LD EA
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKA--AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 234 LVAL 237
Sbjct: 121 ADGY 124
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
GDY A Y ++ P + + LKL D+ A T K +E +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+KAL +LG++++A L++ ++P++
Sbjct: 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F G Y +L Y +AL + + + C KL KA +A++ D +
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 231 VEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
V+AL + QA E G + + + +QR + P + L N
Sbjct: 99 VKALYRRS----QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ L + K D++ A +Y + E++ P + V + GD+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTY-ITNQAAVYFEKGDYNKCRE 59
Query: 364 NFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
EK +E+ +N E + +G+ Y + + + A K+
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
PT N A Y KGDY K ++ E+ + + + Y +G K
Sbjct: 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEE 93
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ A+ + K L + + LK ++A+++L++ ++
Sbjct: 94 KYKDAIHFYNKSLAEHRTP-DVLKKC----------QQAEKILKEQERL 131
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
R IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 321 YEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y K Y S +G +LK+ D++ A+ + + LEI P
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Query: 375 NCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDA 410
N KAL + L + ++A L+KA +I P D
Sbjct: 306 NT---KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-06
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAI--RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F +G Y +++ Y + + P P + + KLG+ +A Q Q+ L+
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNK---AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 231 VEALV--ALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ L A A G ++ + ++ E Y
Sbjct: 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+S + + ++ +Y KA Y ++ I P I+ G A
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIY-LSNRAAAYSASGQHEKA 64
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ E + P + LG + + A+E K + +
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 304 KSHSYY-NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+ Y N A +Y + G +EKA + ++ ++ + LG + + D++ A
Sbjct: 43 ANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP--KYSKAWSRLGLARFDMADYKGAK 99
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+EK +E + + L ++ E + A+ D
Sbjct: 100 EAYEKGIEAEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDD 144
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+G +A+ E +A + L N L +A G++ + E + A V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 194 SCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
A RLG L R+ + A++A+++ ++ +
Sbjct: 77 KYSKAWSRLG--LARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 31/278 (11%), Positives = 65/278 (23%), Gaps = 63/278 (22%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ ++ ++ + +A +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293
A EA K A + F GQ
Sbjct: 74 DEAGNTY----VEAYKCFKSGGNSVNAVDSL-------ENAIQIFTHRGQF--------- 113
Query: 294 ALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYY---MASVKEINKPHEFIFPYYGLG 349
++ + L + DY KA Y + +
Sbjct: 114 --------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKA 402
++ G + A + K+++ N + G + A L++
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 403 AKIDP-----RDAQAFIDLGELLISSDTGAALDAFKTA 435
DP R++ L + + D +
Sbjct: 226 QSEDPNFADSRESNFLKSLIDAVNEGD----SEQLSEH 259
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 30/202 (14%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
E ++I+ GQ + + +I D D
Sbjct: 100 LENAIQIFTHR--------------GQFRRGANFKFELGEILENDLH------------D 133
Query: 425 TGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483
A+D ++ A + + + G++ A + + + L
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 484 LDSKTKTYVIDASASMLQFKDM 505
K Y + L D
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDA 215
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 11/223 (4%)
Query: 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163
+ + A QY ++S++ KG + AK ++A++ ++ +
Sbjct: 47 GHHPDIWYEAAQYLEQSSKL-------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99
Query: 164 AL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
L A E +R +Y Y R L + P + + + + R F++
Sbjct: 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A + V A+M+ ++ + + + Y + ++
Sbjct: 160 AREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKA 324
+ L E L + P KS + ++ S GD
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 21/254 (8%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE------------ 262
+ A+++ L + + + A Q+++ + M + +
Sbjct: 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + A++ ++ V + LA+ + PT + Y + +
Sbjct: 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIK 151
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + ++ H L + D A FE L+ Y D E + A
Sbjct: 152 SGRMIFKKAREDARTRHHVYV-TAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAY 209
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTART 437
L + + L + + ++ ++ D + L K T
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269
Query: 438 LLKKAGEEVPIEVL 451
++ E +L
Sbjct: 270 AFREEYEGKETALL 283
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 2e-05
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN 364
Y +A K DYE L + + + + + + G + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 365 FEKVLEIYPD-------NCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQ 411
FE++L+ + + + E++ + KA +I Q
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 412 AFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453
+ GE L + + DA+K A E L N
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVN 281
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G+ + A Y ++K PH + Y K GD++ A + K +++ PD
Sbjct: 16 SVGNIDDALQCYSEAIK--LDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW- 71
Query: 377 ETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
K L + E+A+ + K + + Q L +
Sbjct: 72 --GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-------GRYSDSLEFYK 186
KG L+ G ++ A + ++ D N L NR G Y + E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYS------NRSAAYAKKGDYQKAYEDGC 62
Query: 187 RALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+ + + P R L + +A++ ++ L+ + N + L
Sbjct: 63 KTVDLKPDWGKGYSRKA--AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P Y N + +Y KGDY+KA +V ++ ++ Y L F A
Sbjct: 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP--DWGKGYSRKAAALEFLNRFEEA 91
Query: 362 LTNFEKVLEIYPDNCETLKAL 382
+E+ L+ +N + + L
Sbjct: 92 KRTYEEGLKHEANNPQLKEGL 112
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
KGDY A +Y +VK P I Y KL +F+ AL + + + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+K V + + KAQ A ++DP + +A
Sbjct: 81 -IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
+ + I+ KG KG+ A + ++ D +N +A +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+L+ +++ IR C + + KA++A++ ALQ+DP N EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKA--ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 843 KKINTHVEYCKHLLDAAKIHREAAERE------EQQNRQRQEAARQAALAEEARRKAEEQ 896
+ + ++ K A+ + E++ E+ Q + A AE +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 897 KKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 956
K + L + + R+ ++EE Q+++ + K +++ + ++++ E R+K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAE------KKKMQQQMLDLEEQLEEEEAARQK 973
Query: 957 GGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND 1016
+ +K + + + E D++ ++ E + EE
Sbjct: 974 ----LQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 1017 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 1076
L + + E+ + + R E + E + D +++ + ++ E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK-LEGESSDLHEQIAELQAQIAELK 1087
Query: 1077 HK 1078
+
Sbjct: 1088 AQ 1089
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 39/286 (13%), Positives = 98/286 (34%), Gaps = 31/286 (10%)
Query: 793 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 852
A + +K + + A +E L A KK+ +
Sbjct: 911 AEEMRVRLAAKKQEL-EEILHEMEARIEEEEERSQQLQAEK---------KKMQQQMLDL 960
Query: 853 KHLLDAAKIHREAAEREEQQ-NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK 911
+ L+ + R+ + E+ + + ++ + E+ K +++K L + ++ D
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL--EERVSDLTT 1018
Query: 912 RLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHY 971
L ++EE + + +K + + E+ E+ E R +K K R++ + +
Sbjct: 1019 NLAEEEEKAKNL----------TKLKNKHESMISEL---EVRLKKEEKSRQELEKIKRKL 1065
Query: 972 ETEYAEADMMDYREEPEDEDASMNYR---EPIGQMNDQDDDVEENANDRLAAAGLEDSDV 1028
E E ++ + + + E + + +D E + + E
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED-ETSQKNNALKKIRELESH 1124
Query: 1029 DDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRE 1074
++ + + + R +E + +L EL+D+
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRD-LSEELEALKTELEDTLDTTAT 1169
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
DYE A +Y ++ E+N P I+ Y L+ + AL + + +E+
Sbjct: 25 KAKDYENAIKFYSQAI-ELN-PSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ + LG+ A K+ P D A + E
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K+ + Y +K D+ A Y +K P + Y KL F A+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG-YSNRAAALAKLMSFPEAIA 59
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K +E P+ + + + A E L A D
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 6e-05
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 1/145 (0%)
Query: 842 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 901
++ + +E + +AA H +E + R ++ + AE+AR++ E + +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 902 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 961
+ + + E + E + E + E+ +K R
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET-EAELERVKKVREMELIYA 773
Query: 962 KKDKSSRSHYETEYAEADMMDYREE 986
+ + A + ++E
Sbjct: 774 RAQLELEVSKAQQLANVEAKKFKEM 798
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 10/239 (4%)
Query: 790 AGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA----ASNLHLHGFDEKKI 845
A V F ++ + R + + + + L + D + +
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSV 643
Query: 846 NTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRK 905
+ DA + + A +++ L +EAR + E QK +L++ +
Sbjct: 644 E---PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK--ILDQSE 698
Query: 906 LEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDK 965
E +K L + E V+ + A R E + + + K + + + +
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 966 SSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLE 1024
R E E + E E A + + + + LA AG E
Sbjct: 759 LERVKKVRE-MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 410 AQAFIDLGELL 420
L L+
Sbjct: 65 LPGASQLRHLV 75
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 21 VGRKYPEAAACYGRAITR--NPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 16 VGRKYPEAAACYGRAIT--RNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 3e-04
Identities = 35/366 (9%), Positives = 86/366 (23%), Gaps = 26/366 (7%)
Query: 47 AREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREK 106
++ +Q +V+ R++ + + ++R T I +
Sbjct: 201 VNKFEEQQRVQYIRKLYKT--LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQY 258
Query: 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166
L + N + + P T + L K + ++ L
Sbjct: 259 MNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE 318
Query: 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
+ R Y Y +A Q P K + + Q
Sbjct: 319 LSDDLHKARMTYV-----YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373
Query: 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
P + +L+ K+ C ++
Sbjct: 374 IPNSAVLAFSLSEQYELNT----------KIPEIETTILSCIDRIHLDLAALM------- 416
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E A+ ++ Y + + + + I+
Sbjct: 417 -EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + D ++A E L+ + + E + + + + + + L +
Sbjct: 476 AYIEYHIS-KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534
Query: 407 PRDAQA 412
Sbjct: 535 SDSHLL 540
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 411
L+ G+ AL + + + + A ++ Q E AQELL +
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 412 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467
+ I EL + L + A E+ + V + + G E A
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQEL-----AANPDNFELACELAVQYNQVGRDEEA 127
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 11/244 (4%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
LG + A Q ++ + L M+ + E+ +
Sbjct: 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYF 325
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
A++ ++ V + LA+ + PT + Y + + + + +
Sbjct: 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIKSGRMIFKKAR 383
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 392
++ + ++ L + D A FE L+ Y D E + A L +
Sbjct: 384 EDA-RTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441
Query: 393 EKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVP 447
+ L + + ++ ++ D + L K T ++ E
Sbjct: 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 501
Query: 448 IEVL 451
+L
Sbjct: 502 TALL 505
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.89 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.85 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.83 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.82 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.82 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.81 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.81 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.81 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.81 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.8 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.76 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.73 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.73 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.72 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.72 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.68 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.67 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.66 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.65 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.63 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.61 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.59 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.56 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.51 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.45 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.44 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.43 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.42 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.41 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.38 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.37 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.36 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.33 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.33 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.28 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.27 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.24 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.2 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.19 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.19 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.14 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.84 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.79 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.79 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.74 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.72 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.68 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.62 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.25 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.13 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.0 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.93 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.75 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.51 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.05 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.01 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.94 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.83 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.69 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.04 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.88 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.81 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.68 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.18 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.65 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.22 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.01 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.19 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.14 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.32 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 90.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.43 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.03 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.57 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 87.47 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 83.96 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 83.16 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=384.05 Aligned_cols=509 Identities=12% Similarity=0.019 Sum_probs=409.6
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|......+..++..+...|++++|+..|.+++...|++ ..++.++.++...|+ +.+|+..|.+++.. |.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD---YARAKCLLTKEDLY-NRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC---HHHHHHHHHHTCGG-GTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc---HHHHHHHHHHHhcc-ccchhHHH
Confidence 43335566777777777788888888887777777743 566677777777777 77777777766543 55666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.++.+|...|++++|+.+|++.. |.... +..+...+ ......+..+.+++.+|.+|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~-----~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETN------PFRKD-----EKNANKLL-------------MQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSC------TTC----------------------------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccC------Ccccc-----cccccccc-------------ccccccchhHHHHHHHHHHH
Confidence 66666666666666666666321 11100 00000000 00012244577899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHhCCCC-HHHHHHHHHHH-hcCCHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRD-AQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~k~l~~~p~~-~~~~~~la~l~-~~~~~~~ 427 (1088)
...|++++|+.+|++++..+|.+..++..++.++...+....+... +.++...++.. ...+..++..| ..|++++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999999999999999999998877655443333221 23332222211 22334446667 8889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
|+..|.+++.. + .+..+++.++.++...|++++|+.+|++++.
T Consensus 291 A~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------- 333 (597)
T 2xpi_A 291 AEDYLSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILE------------------------------- 333 (597)
T ss_dssp HHHHHHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHhhcC-C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------
Confidence 99999888765 2 3588999999999999999999999999987
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 587 (1088)
..|.+..++..++.++...|++++|..++..++...|.++.++..++.++...|++++|+.+|++++.
T Consensus 334 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 334 ------------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp ------------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 588 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
.+|.++.+|..++.+|...|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|+++
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSS 467 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 67788889999 9888 9999999999999
Q ss_pred HhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCc-hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 668 l~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~-~~~~~-~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
+..+|.++.+++.+|.++...|++++|+.+|+++++..|.. ..|+. ..+|.++|.+|...|++++|+..|++++..
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 545 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-- 545 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999986531 11232 679999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHH
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 795 (1088)
.+.++.++..+|.+|...|++++|+.+|+++++++|+++.++++++.+|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 57789999999999999999999999999999999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=355.16 Aligned_cols=383 Identities=20% Similarity=0.254 Sum_probs=345.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001392 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (1088)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~ 424 (1088)
+.+|..++..|++++|+..|.+++..+|+++.++..++.++...|++++|..++.+++..+|.++.++..+|.++ ..|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 356778888888888888888888888888888888888888888888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
+++|+..|++++...|. ...++.++|.++...|++++|+..|.+++.
T Consensus 83 ~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------- 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Confidence 88888888888877544 467888889999999999999999988887
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 584 (1088)
..|....++..+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 130 ---------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 130 ---------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ---------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHH
Q 001392 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (1088)
Q Consensus 585 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (1088)
++.++|+++.++..+|.++...|++++|+..|.+++...|. +..++..+|.+ |... |++++|+..|
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~ 260 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTY 260 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHH-HHHc------------CCHHHHHHHH
Confidence 99999999999999999999999999999999999998886 67778888988 8888 9999999999
Q ss_pred HHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 665 ~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
++++..+|.++.++..+|.++...|++++|+.+|+++++..| .++.++.++|.++...|++++|+..|++++..
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 999999999999999999999999999999999999999987 78899999999999999999999999999987
Q ss_pred cCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 745 ~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
.|.++.++..+|.+|...|++++|+..|++++.+.|+++.+++++|.++..+
T Consensus 335 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 5677899999999999999999999999999999999999999999987654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=349.76 Aligned_cols=383 Identities=22% Similarity=0.279 Sum_probs=272.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1088)
.+|..++..|++++|+..|..++..+|+++.++..++.+++..|++++|..+++.++..+|.+ +.+++.+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence 457778888888888888888888888888888888888888888888888888888888887 6678888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1088)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1088)
+++|+..|++++.++|++..++..+|.++...|+ +++|+..|.+++..+|++..++..++.++...|++++|+..+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888888888888888888888888887 8888888888888888777777777766666666666666666
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001392 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1088)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1088)
+++... |..+.++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..|.+++..+
T Consensus 160 ~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666543 44556666666666667777777777776666 345566666677777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001392 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1088)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1088)
|+++.++..+|.++...|++++|+..|++++..+|.++.++..++.++ ..|++++|+..|++++...|. .+.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHH
Confidence 777777777777777777777777777777777776666666666666 666666666666666655332 35555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhH
Q 001392 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1088)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (1088)
..+|.++...|++++|+..|++++. ..|.+..+++++
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l 345 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCCcHHHHHHH
Confidence 6666666666666666666666655 334455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 001392 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1088)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1088)
|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666665555444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=375.90 Aligned_cols=481 Identities=14% Similarity=0.078 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
.+..+..++..|...|... +|+.+|.+++...| +...++.+|.+|...|++++|+..|.+++.. |.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 149 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYK-----------CAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS 149 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC
T ss_pred HHHHHHHHHHHHHHccCch-----------HHHHHHHHHHhhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccc
Confidence 3456778888888877766 89999999999888 4577889999999999999999999998654 678
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+.++..++.+|...|++++|+.+|++. .|.. ...+++.+|.+|.+.|++++|+..|+++
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999863 3443 3678999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHH---HHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001392 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEK---MQRAFEIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1088)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~---~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 299 (1088)
+..+|.+..++..++.++...+. ...+... +......++.. ..++..++..|...|++++|..++..++..
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 301 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTAD---EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-- 301 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHH---HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--
T ss_pred HHhCchhhHHHHHHHHhhcccch---hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--
Confidence 99999999999999887765544 2221111 33333322221 123344577788889999999999888764
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001392 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1088)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1088)
+....+++.++.+|...|++++|+.+|.+++. ..|....++..++.++...|++++|+..|.+++...|.++.++
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILE---IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 45678899999999999999999999999987 3456777888999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
..+|.+|...|++++|+.+|.+++...|.+..+|..++.++ ..|++++|+..|++++...+. ...+++.+|.++
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~ 451 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999998876443 467888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 538 (1088)
...|++++|+.+|++++. ..|.++.++..+|.++...
T Consensus 452 ~~~g~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYA-------------------------------------------LFQYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHTCHHHHHHHHHHHHH-------------------------------------------HCCCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH-------------------------------------------hCCCChHHHHHHHHHHHHh
Confidence 999999999999999987 3456788899999999999
Q ss_pred CCHHHHHHHHHHHHHH------cCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHH
Q 001392 539 HDTVAASVLYRLILFK------YQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1088)
Q Consensus 539 g~~~~A~~~~~~~l~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1088)
|++++|+.+|++++.. +|+. ..++..++.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999887 5654 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHhhhH
Q 001392 612 AKETFRAASDATDGKDSYATLSLGNW 637 (1088)
Q Consensus 612 A~~~~~~al~~~~~~d~~a~~~lg~~ 637 (1088)
|...|++++...|. +..++..++++
T Consensus 569 A~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 569 AITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 99999999998887 66667667765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=336.62 Aligned_cols=460 Identities=13% Similarity=0.121 Sum_probs=276.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..++..|++++|+..|++++..+|+++.+++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666665 45556666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
..+|++++|+..|+ ++..+|+....+.. .+...+. ...|+..+.+++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRG------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------------------------
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHH---HHHHHHHHHHHHHhCcccc-------------------
Confidence 66666666666663 55555554433211 1111111 3334444444333332211
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH
Q 001392 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1088)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1088)
............+....+...++..+..
T Consensus 158 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 158 ----------------------------------------------------SQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp -----------------------------------------------------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred ----------------------------------------------------ccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 0001111122223333344444333333
Q ss_pred HHHhCCCcHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001392 368 VLEIYPDNCETLKALGHIY--------VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~ 439 (1088)
.....+........++.++ ...|++++|+..|.+++..+|+++..+..++.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------------- 244 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL--------------------- 244 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH---------------------
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH---------------------
Confidence 3333333233333333222 22346777777777777777777665544332
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcC
Q 001392 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (1088)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1088)
++..+|.++...|++++|+..|.+++..
T Consensus 245 ----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~------------------------------------------ 272 (537)
T 3fp2_A 245 ----------ALCYTGIFHFLKNNLLDAQVLLQESINL------------------------------------------ 272 (537)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhc------------------------------------------
Confidence 2344566666667777777777666652
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 599 (1088)
.|. ..+++.+|.++...|++++|+.+|.+++..+|+++.++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus 273 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 348 (537)
T 3fp2_A 273 -HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI-- 348 (537)
T ss_dssp -CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH--
T ss_pred -CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 333 5566666666666666666666666666666666666666666666666666666666666666665554444
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
.+|.+ |... |++++|+.+|++++..+|.++.++.
T Consensus 349 ---------------------------------~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 349 ---------------------------------QLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp ---------------------------------HHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred ---------------------------------HHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 45555 5555 6666667777777777788888888
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHc----------cCHHHHHHHHHHHHHHhcCCC
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNT 748 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~----------g~~~~Ai~~~~~al~~~~~~~ 748 (1088)
.+|.++...|++++|+..|++++...|..... .....++.+|.++... |++++|+..|++++.. .+.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC
Confidence 88888888899999999999998888743221 2233466778999999 9999999999999998 567
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHH
Q 001392 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1088)
Q Consensus 749 ~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla 791 (1088)
++.++..+|.+|...|++++|+.+|++++.+.|.++.....+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 7899999999999999999999999999999999877655443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=331.85 Aligned_cols=426 Identities=15% Similarity=0.132 Sum_probs=353.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..++..|+|++|+..|++++..+| ++.++..+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 45788888888888888888888888888888 68888888888888888888888888888888888 67788888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHH---------------------------
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA--------------------------- 260 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~a--------------------------- 260 (1088)
..+|++++|+..|++++..+|.+......+..............+++..+..+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 88888888888888888888865544333322222221111122222111111
Q ss_pred -------HHh--------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----h--cCCC----CCchHHHHHH
Q 001392 261 -------FEI--------YPYCAMALNYLANHFFF---TGQHFLVEQLTETALA-----V--TNHG----PTKSHSYYNL 311 (1088)
Q Consensus 261 -------l~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~~~~----~~~~~~~~~l 311 (1088)
+.. .|.++.++..++..++. .|+++.|+.++..++. . .+.. |..+.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 14558888888988887 8999999999999998 3 2222 5567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1088)
|.++...|++++|+.+|.+++.. .|. ..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999984 455 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001392 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1088)
Q Consensus 392 ~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (1088)
+++|+..|.+++...|.++.++..++.++ ..|++++|+..+.+++...+. .+.++..+|.++...|++++|+.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987554 368899999999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHh---cCCHHHHHHH
Q 001392 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVL 547 (1088)
Q Consensus 471 l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 547 (1088)
|.+++...+... .......+++.+|.++.. .|++++|+..
T Consensus 395 ~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 395 YDLAIELENKLD-------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHTSS-------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccc-------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 999988532100 011124589999999999 9999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhh
Q 001392 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (1088)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~ 601 (1088)
|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=325.81 Aligned_cols=439 Identities=15% Similarity=0.129 Sum_probs=359.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1088)
+..++.+|..++..|++++|+..|.+++.. .| ...+++.+|.++...|++++|+.+|++++..+|+++.++..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL---KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc---Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 467888999999999999999999999874 34 47788999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH---HHHH------------------------
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF---KTAR------------------------ 436 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~---~~a~------------------------ 436 (1088)
+|...|++++|+..|.+++...|.+......+...+ .......+...+ ..+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999998886644333222222 111111111111 0000
Q ss_pred ----HHHHhcC---------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001392 437 ----TLLKKAG---------EEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1088)
Q Consensus 437 ----~~~~~~~---------~~~~~~~~~~l~~~~~~---~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1088)
....... .+.....+..+|.+++. .|++++|+.+|.+++...... +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~---------------- 223 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ--L---------------- 223 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH--T----------------
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh--h----------------
Confidence 0000000 01126777888888886 899999999999998721000 0
Q ss_pred HhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHH
Q 001392 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (1088)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 580 (1088)
..........|..+.+++.+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+.
T Consensus 224 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 224 -----------DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp -----------TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGG
T ss_pred -----------ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHH
Confidence 0000000012567889999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHH
Q 001392 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (1088)
Q Consensus 581 ~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 660 (1088)
++.+++..+|.++.++..+|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A 357 (514)
T 2gw1_A 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------NKFDDC 357 (514)
T ss_dssp HHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------TCHHHH
T ss_pred HHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHc------------CCHHHH
Confidence 999999999999999999999999999999999999999998887 66788889988 8887 999999
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHH---ccCHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA---QGNFALAMKM 736 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~---~g~~~~Ai~~ 736 (1088)
+.+|.+++..+|.++.++..+|.++...|++++|+.+|.+++...|.... .....+++++|.++.. .|++++|+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999984211 1113499999999999 9999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 737 ~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
|++++.. .+.++.++..+|.+|...|++++|+.+|++++.++|+++.++..+.+.
T Consensus 438 ~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 438 LEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999998 567799999999999999999999999999999999999988887664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=330.34 Aligned_cols=454 Identities=16% Similarity=0.131 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001392 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1088)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 158 (1088)
.......+..+|..|+..|... +|+.+|++++..+|+++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999998887 89999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---H
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 235 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 235 (1088)
|+++.+++.+|.++...|++++|+..|+ ++..+|..... + ...+...+....|+..+.+++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH-H---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 9999999999999999999999999996 88888876322 2 2344555667889999999988765432110 1
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhcCCCCC----
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF--------FTGQHFLVEQLTETALAVTNHGPT---- 303 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~~~~~~---- 303 (1088)
.....++...+ ...++..+.+....++........++.++. ..|++.+|+.+++.++...+..+.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred hHHHHHHHhcC---hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 11111222222 333443333333333443333333333322 224566666666666654332221
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001392 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1088)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1088)
...++..+|.++...|++++|+.+|.+++.. .|. ..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1356788899999999999999999999984 455 788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001392 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1088)
Q Consensus 384 ~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (1088)
.++...|++++|+..|.+++..+|.++.++..+|.++ ..|++++|+..|.+++...|. .+.++..+|.++...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 999999999999999988554 3678999999999999
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc----
Q 001392 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI---- 538 (1088)
Q Consensus 463 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 538 (1088)
++++|+..|++++...+... ........++.+|.++...
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQE-------------------------------------KIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-------------------------------------SCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHcCCcch-------------------------------------hhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999998543110 1112334567788899988
Q ss_pred ------CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHH
Q 001392 539 ------HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 539 ------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++.++|..+....
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-30 Score=303.15 Aligned_cols=380 Identities=19% Similarity=0.164 Sum_probs=290.7
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1088)
..+...+..++..+|.++..++.+|..++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 191 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
.+|.+ ..+++.+|.++..+|++++|+..|++++..+|++. .++..++.++..
T Consensus 89 ~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------ 143 (450)
T 2y4t_A 89 LKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------ 143 (450)
T ss_dssp HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred cCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------------------
Confidence 77776 55666777777777777777777777777776665 444444433211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
..++.+|.++...|++++|+.+|.+++. ..|....++..
T Consensus 144 --------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 182 (450)
T 2y4t_A 144 --------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELREL 182 (450)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHH
Confidence 2345567778888899999999999887 45677888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~ 427 (1088)
+|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+.+|.+++...|++...+..++.+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~------- 255 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------- 255 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999988877665432
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
....+..+|.++...|++++|+.+|.+++...
T Consensus 256 -------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------- 287 (450)
T 2y4t_A 256 -------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE----------------------------- 287 (450)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------
Confidence 02334567888999999999999999998742
Q ss_pred hhhhccCCCCcCCCCcc----hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 583 (1088)
|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+
T Consensus 288 --------------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 288 --------------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333 45788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCChhHHHhhh------------hhhhccc-----chHHHHHHHHH-hhhcCCC
Q 001392 584 EALKVNGKYPNALSMLG------------DLELKND-----DWVKAKETFRA-ASDATDG 625 (1088)
Q Consensus 584 ~al~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-al~~~~~ 625 (1088)
+++.++|+++.++..++ .+|...| ...++...|++ ++...|+
T Consensus 354 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999888 4455555 45667777776 5655554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-30 Score=299.04 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=267.4
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1088)
Q Consensus 89 la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1088)
-+..+..+|... .+.|+|.+|+.+|++++..+|.++.+++.+|.+++..|++++|+..|.+++..+|+++.++..+
T Consensus 25 ~~~~~~~~~~~~----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKL----LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 455667777665 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
|.++...|++++|+..|++++..+|.+ . .++..++.++.. ..++.+|.++...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSE-NEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcC
Confidence 999999999999999999999999987 5 556666655432 23456777888888
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001392 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1088)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1088)
+ +.+|+..|.+++..+|.++.++..++.+|...|++++|+.++..++... |..+.+++.+|.++...|++++|+
T Consensus 158 ~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 158 D---YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp C---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8 9999999999999999999999999999999999999999999988764 556688888898998999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHhhH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhc
Q 001392 326 LYYMASVKEINKPHEFIFPYYGL------------GQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQL 389 (1088)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~ 389 (1088)
.+|.+++. ..|.....+..+ |.++...|++++|+.+|++++...|.++ .++..+|.++...
T Consensus 232 ~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 232 SEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 99888887 345555555444 7777777777777777777777777764 3667777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 390 g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
|++++|+.++.+++..+|+++.++..+|.++ ..|++++|+..|++++.+.|. .+.++..++.+.
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 373 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-----DQQIREGLEKAQ 373 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHH
Confidence 7777777777777777777777777777777 777777777777777765433 355555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=276.88 Aligned_cols=345 Identities=19% Similarity=0.184 Sum_probs=269.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|..++..|++++|+..|.+++..+|+++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666 45566666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 208 YKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
...|++++|+..|++++..+| ++..++..++.++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------------------- 120 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------------------------- 120 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-----------------------------------------
Confidence 666666666666666666666 444444444432110
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1088)
..+..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+
T Consensus 121 ---------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 121 ---------------------QRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp ---------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 2345677788888999999999999887 4567788899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 001392 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
|++++...|.++.++..+|.++...|++++|+..|.+++...|++..++..+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 232 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------------------ 232 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999988765544332
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc
Q 001392 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1088)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1088)
.......+|.++...|++++|+..|++++... |.+
T Consensus 233 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------------~~~ 267 (359)
T 3ieg_A 233 --KLNKLIESAEELIRDGRYTDATSKYESVMKTE-------------------------------------------PSV 267 (359)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSS
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------------------------CCc
Confidence 03445567889999999999999999998842 223
Q ss_pred h----HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhh
Q 001392 525 V----TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1088)
Q Consensus 525 ~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~ 600 (1088)
. .++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 2 457789999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhccc
Q 001392 601 DLELKND 607 (1088)
Q Consensus 601 ~~~~~~g 607 (1088)
.++...+
T Consensus 348 ~~~~~~~ 354 (359)
T 3ieg_A 348 KAQRLLK 354 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-28 Score=272.16 Aligned_cols=323 Identities=17% Similarity=0.150 Sum_probs=285.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
+..+..+|..|...|+.. +|+.+|.+++..+|.++.+++.+|.+++..|++++|+..|.+++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLA-----------DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 456788899988888766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChhHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHP---SCPGAIRLGI------------GLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
.++..+|.++...|++++|+..|++++...| .+ ..++..+ |.++...|++++|+..|.+++..+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 66 5555555 799999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
|.++.++..+|.++...|+ +++|+..+.+++..+|.++.++..+|.++...|++++|...+..++...+..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE---PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999776433321111
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001392 308 ---------YYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (1088)
Q Consensus 308 ---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (1088)
...+|.++...|++++|+..|.+++...+..+. ...++..+|.++...|++++|+.+|++++..+|+++.
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 224488899999999999999999885332111 1134667899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
++..+|.++...|++++|+..|+++++++|++..++..++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-29 Score=292.38 Aligned_cols=393 Identities=17% Similarity=0.121 Sum_probs=242.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEA---------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--- 194 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--- 194 (1088)
.+..+..+|.++...|++++|+..|++++.+ +|....++..+|.+|+.+|++++|+.+|++++.+.|.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566778999999999999999999999876 5777889999999999999999999999999987431
Q ss_pred ----ChhHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 195 ----CPGAIRLGIGLCRYKLG--QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 195 ----~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++...++.+...+|+..|++++.++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 12567777887777654 799999999999999999999999999988777665557889999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhH
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1088)
.++..++..+...+ ...|++++|..+|.+++. ..|....++..+
T Consensus 210 ~~~~~l~~~~~~~~---------------------------------~~~~~~~~a~~~~~~al~---~~~~~~~~~~~l 253 (472)
T 4g1t_A 210 YLKVLLALKLHKMR---------------------------------EEGEEEGEGEKLVEEALE---KAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------------hhhhHHHHHHHHHHHHHH---hCccHHHHHHHH
Confidence 87776665543332 233455666666666665 445666667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~ 427 (1088)
|.+|...|++++|+..|.++++.+|+++.++..+|.+|...+....+.. ....+... ..+.++.
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR---------------ENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHhhHHH
Confidence 7777777777777777777777777777777777766643321111000 00011111 1223344
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001392 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1088)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1088)
|+..+.+++...+. ...++..+|.++...|++++|+.+|++++...+
T Consensus 319 A~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---------------------------- 365 (472)
T 4g1t_A 319 AVAHLKKADEANDN-----LFRVCSILASLHALADQYEEAEYYFQKEFSKEL---------------------------- 365 (472)
T ss_dssp HHHHHHHHHHHCTT-----TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----------------------------
T ss_pred HHHHHHHHhhcCCc-----hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC----------------------------
Confidence 55555555554332 133445555566666666666666666555211
Q ss_pred hhhhccCCCCcCCCCcchHHHHhHHHH-HHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 508 FHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1088)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 586 (1088)
.+.....+++.+|.+ +...|++++|+..|.+++.+.|.+...... ...+..++.+++
T Consensus 366 ------------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l 423 (472)
T 4g1t_A 366 ------------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRL 423 (472)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHH
Confidence 000011233444433 234556666666666666666655332211 122344455566
Q ss_pred HHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 587 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
..+|.++.++..+|.+|...|++++|+..|+++++..+.
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 666666666666666666666666666666666665443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=287.03 Aligned_cols=363 Identities=15% Similarity=0.072 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC-------
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEI------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------- 372 (1088)
.+|..+|.+++.+|++++|+.+|+++++.. ...+....++.++|.+|...|++++|+.+|++++.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 344445555555555555555555544321 1123334444455555555555555555555554431
Q ss_pred -CCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 373 -PDNCETLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 373 -p~~~~~~~~la~~~~~~--g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~----~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
+..+.++..+|.++... +++++|+.+|++++.++|+++.++..++.++ ..++..+|+..|++++.+.|.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~---- 207 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD---- 207 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS----
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc----
Confidence 22344444444444333 2345555555555555555555555444442 223444455555555444222
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCC
Q 001392 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
.+.++..+|..+.. .|++++|..+|++++. ..
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-------------------------------------------~~ 243 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-------------------------------------------KA 243 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHH-------------------------------------------HC
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------------------------------------------hC
Confidence 23444444433332 2344555555555554 23
Q ss_pred CcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------------------cCChHHHHHHH
Q 001392 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-------------------RNNLQLSIELV 582 (1088)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------------------~g~~~~A~~~l 582 (1088)
|....++.++|.+|...|++++|+..|.+++..+|+++.++..+|.+|.. .+.++.|+..+
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555432 23356677777
Q ss_pred HHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH--HHHHhhhHHHHHHhhhhhcChhHHHHHHHHH
Q 001392 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (1088)
Q Consensus 583 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~--a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 660 (1088)
.+++.++|.+..++..+|.+|...|++++|+..|++++...+.+... .+..+|.+.+... |++++|
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A 391 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM------------KCEDKA 391 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS------------SCHHHH
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC------------CCHHHH
Confidence 77777777777777777777777777777777777777765542221 2334444412222 566777
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
+..|.+++.++|.+......+ ..+..++.+++...| .++.+|.++|.+|..+|++++|+++|+++
T Consensus 392 i~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p-----~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNG-----ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC------CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777654432221 233445555666555 55666666666666666666666666666
Q ss_pred HHH
Q 001392 741 LRK 743 (1088)
Q Consensus 741 l~~ 743 (1088)
+..
T Consensus 457 Le~ 459 (472)
T 4g1t_A 457 LES 459 (472)
T ss_dssp ---
T ss_pred Hhc
Confidence 665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=258.26 Aligned_cols=301 Identities=17% Similarity=0.225 Sum_probs=276.4
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001392 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1088)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1088)
...+...|.++..++.+|..++..|++++|+..|++++..+|.+..++..++.+++..|++++|+.++++++..+|.+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-P 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-H
Confidence 345566688899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 198 AIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1088)
Q Consensus 198 ~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1088)
.+++.+|.++...| ++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|.+++...|.+..++..+|.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC------CCCchhhHhhHHH
Q 001392 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK------PHEFIFPYYGLGQ 350 (1088)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~ 350 (1088)
++...|+++.|+.++..++... |..+.++..+|.++...|++++|+.+|.+++...+. .+....++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999654 667799999999999999999999999999985421 1555678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDT 425 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~--~~~~~ 425 (1088)
++...|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++ ..|+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 55554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=257.64 Aligned_cols=392 Identities=15% Similarity=0.140 Sum_probs=306.9
Q ss_pred CchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 001392 303 TKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPD 374 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~ 374 (1088)
..+.+++.+|.+|.. .+++++|+.+|.++.. ...+.+++.+|.+|.. .+++++|+.+|+++... .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-----QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 345777777777777 7888888888888876 2456778888888888 88888888888888764 5
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h----cCCHHHHHHHHHHHHHHHHhcCCC
Q 001392 375 NCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEE 445 (1088)
Q Consensus 375 ~~~~~~~la~~~~~----~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~----~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1088)
++.+++.||.+|.. .+++++|+.+|+++... .++.+++.||.+| . .+++++|+.+|+++...
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 77888888888887 77888888888888764 5778888888888 4 66888888888888763
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCC
Q 001392 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (1088)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1088)
.++..++.+|.+|.. .+++++|+.+|+++...
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------------------- 216 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------------------------------------------- 216 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------------------------------------------
Confidence 147788888888887 78888888888888762
Q ss_pred CcchHHHHhHHHHHHh----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCh
Q 001392 522 WNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYP 593 (1088)
Q Consensus 522 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~ 593 (1088)
.++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++... .++
T Consensus 217 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 217 -GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 256778888888886 78888888888888764 557788888888888 88888999999888754 567
Q ss_pred hHHHhhhhhhhcc-----cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH
Q 001392 594 NALSMLGDLELKN-----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1088)
Q Consensus 594 ~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al 668 (1088)
.+++.+|.+|... +++++|+..|++++... +..+++.||.+ |..... .+++++|+.+|++++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-y~~~g~---------~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI-YFRLGS---------EEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHSCC---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH-HHhCCC---------cccHHHHHHHHHHHH
Confidence 7888888888877 88999999999888764 45677788888 766410 058899999999998
Q ss_pred hcCCCCHHHHhhHHHHHHh----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 001392 669 VQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNC 740 (1088)
Q Consensus 669 ~~~p~~~~a~~~la~~l~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~a 740 (1088)
.. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.++++||.+|.. .+++.+|+.+|+++
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 87 578899999999998 789999999999998853 58899999999998 89999999999999
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 741 LRKFYY-NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 741 l~~~~~-~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
+...+. +.++.+...||.++.. +...|.....+.++..|.+
T Consensus 430 ~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~ 471 (490)
T 2xm6_A 430 STNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPE 471 (490)
T ss_dssp HHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHH
T ss_pred HHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHH
Confidence 988533 3357778888877654 3345555555555555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-24 Score=252.92 Aligned_cols=328 Identities=17% Similarity=0.144 Sum_probs=205.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~ 184 (1088)
++..+.++.. +.++.+++.+|.+|+. .+++++|+..|++++.. .++.+++.+|.+|.. .+++++|+.+
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4555665544 6788999999999998 89999999999999876 578899999999998 8999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hchHHhHHHHHHH
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEK 256 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~ 256 (1088)
|+++.... + +..++.+|.+|.. .+++++|+.+|+++... +++.+++.||.+|.. .++ +.+|+.+
T Consensus 102 ~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~ 173 (490)
T 2xm6_A 102 YKKAALKG--L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD---YVMAREW 173 (490)
T ss_dssp HHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHH
T ss_pred HHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 99998753 4 5678889999988 78999999999998764 578888888888876 455 8888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCCHHHHHHHH
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYY 328 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 328 (1088)
|+++... .++.+++.++.+|.. .+++++|..++.++... ..+.+++.+|.+|.. .+++++|+.+|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8887765 356666666666655 55555555555555542 223455555555554 45555555555
Q ss_pred HHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 001392 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELL 399 (1088)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~ 399 (1088)
.+++. .....+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|
T Consensus 247 ~~a~~-----~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAE-----QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 55543 1233445555555554 45555555555555432 3444555555555544 4555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 001392 400 RKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSF 471 (1088)
Q Consensus 400 ~k~l~~~p~~~~~~~~la~l~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l 471 (1088)
+++.+. .++.+++.+|.+| ..| ++++|+.+|+++... .++..++++|.+|.. .+++++|+.+|
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 555443 2344444444444 222 344444444444332 123444444444444 34444444444
Q ss_pred HHHH
Q 001392 472 KDAL 475 (1088)
Q Consensus 472 ~~al 475 (1088)
++++
T Consensus 391 ~~A~ 394 (490)
T 2xm6_A 391 RKAA 394 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=247.76 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..++..++..++..|... +|+.+|++++..+|.++.++..++.+++..|++++|+..|.+++..+|.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFK-----------MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 346677888888877766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 163 ~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
.+++.+|.++...| ++++|+..|++++..+|.. +.++..+|.++...|++++|+..|++++...|++..++..+|.++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999 9999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred HhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCCchHHHHHHHHHH
Q 001392 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSY 315 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~~~~la~~~ 315 (1088)
...|+ +++|+..|++++..+|.++.++..+|.++...|++++|+..+..++...+. .+..+.++..+|.++
T Consensus 170 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999976422 145568999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhcCCHH
Q 001392 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY-VQLGQIE 393 (1088)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~ 393 (1088)
...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++..+|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 45678889999999999999999999999999999999999999999998 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-24 Score=258.28 Aligned_cols=430 Identities=13% Similarity=0.058 Sum_probs=333.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001392 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1088)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1088)
|+++++.+|.+..+|+.++.. ...|++++|...|++++...|.++.+|..++..+...|++++|..+|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~- 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H- 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-
Confidence 678899999999999999984 7899999999999999999999999999999999999999999999999999999 4
Q ss_pred hHHHHHHHH-HHHHcCCHHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHh---------hchHHhHHHHHHHHHH
Q 001392 197 GAIRLGIGL-CRYKLGQLGKARQ----AFQRALQL---DPENVEALVALAVMDLQ---------ANEAAGIRKGMEKMQR 259 (1088)
Q Consensus 197 ~~~~~~lg~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~la~~~~~---------~~~~~~~~~Al~~~~~ 259 (1088)
..+|+.++. +....|+++.|+. .|++++.. +|.+...|..++.+... .|+ ++.|..+|++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHH
Confidence 456777764 4456788877765 88888764 56778888888877655 455 9999999999
Q ss_pred HHHhCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH---Hh
Q 001392 260 AFEIYPYCAM--ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KE 334 (1088)
Q Consensus 260 al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~ 334 (1088)
++. .|.... .+...+......|. . ..... +....+++..|...|.... ..
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~-~----~~~~~-------------------l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINI-H----LAKKM-------------------IEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCH-H----HHHHH-------------------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhch-h----HHHHH-------------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999 565432 22222221111110 0 00000 0112345666766665521 11
Q ss_pred cCC-----CCCc-------hhhHhhHHHHHHHc----CC----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh------
Q 001392 335 INK-----PHEF-------IFPYYGLGQVQLKL----GD----FRSALTNFEKVLEIYPDNCETLKALGHIYVQ------ 388 (1088)
Q Consensus 335 ~~~-----~~~~-------~~~~~~la~~~~~~----g~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 388 (1088)
+.. +|.. ...|.......... ++ ...++..|++++..+|.++.+|..+|.++..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 111 2221 12333332222211 22 2478899999999999999999999999986
Q ss_pred -cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001392 389 -LGQIE-------KAQELLRKAAK-IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1088)
Q Consensus 389 -~g~~~-------~A~~~~~k~l~-~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (1088)
.|+++ +|+.+|++++. ..|++..+|+.++.++ ..|++++|...|++++...+. .+..+|..++.++
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI----DPTLVYIQYMKFA 366 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS----CHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc----CchHHHHHHHHHH
Confidence 78877 99999999997 7999999999999999 999999999999999986332 1136899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHH-HHh
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQ 537 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~ 537 (1088)
.+.|++++|+.+|.+++.. .|....++...+.+ +..
T Consensus 367 ~~~~~~~~A~~~~~~Al~~-------------------------------------------~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARED-------------------------------------------ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------TTCCTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-------------------------------------------cCCchHHHHHHHHHHHHH
Confidence 9999999999999999983 33344555555544 446
Q ss_pred cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh----HHHhhhhhhhcccchHHHH
Q 001392 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKAK 613 (1088)
Q Consensus 538 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~ 613 (1088)
.|++++|..+|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++. +|..++.+....|+.+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999877665 8888888889999999999
Q ss_pred HHHHHhhhcCC
Q 001392 614 ETFRAASDATD 624 (1088)
Q Consensus 614 ~~~~~al~~~~ 624 (1088)
.++.+++...|
T Consensus 484 ~~~~r~~~~~p 494 (530)
T 2ooe_A 484 KVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHCc
Confidence 99999998776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=255.87 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=192.9
Q ss_pred HHHHHHHH-HHHHHhhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001392 108 EHFILATQ-YYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (1088)
Q Consensus 108 ~~~~~A~~-~~~~a~~~~p~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al 182 (1088)
++|.+|+. .|++++...|.++ ..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 34558998 9999999988774 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------------HHHHHhhch
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------------AVMDLQANE 246 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------------a~~~~~~~~ 246 (1088)
..|++++..+|.+ ..++..+|.++...|++++|+..|.+++..+|.+..++..+ +.++ ..|+
T Consensus 119 ~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (368)
T 1fch_A 119 SALRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL 196 (368)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc
Confidence 9999999999998 77899999999999999999999999999999887665433 2222 2222
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 001392 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1088)
+.+|+..|.+++..+|.. + .+.++..+|.++...|++++|+.
T Consensus 197 ---~~~A~~~~~~a~~~~p~~----------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 197 ---FLEVKELFLAAVRLDPTS----------------------------------I-DPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp ---HHHHHHHHHHHHHHSTTS----------------------------------C-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCcCc----------------------------------c-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 333333333333333330 0 22444445555555555555555
Q ss_pred HHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
+|.+++. ..|....+++.+|.++...|++++|+.+|++++...|.++.++..+|.+|...|++++|+.+|++++.+.
T Consensus 239 ~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 239 CFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555554 2344445555555555555555555555555555555555555555655555566666666655555555
Q ss_pred CCC-----------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001392 407 PRD-----------AQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1088)
Q Consensus 407 p~~-----------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~ 439 (1088)
|.+ ..+|..++.++ ..|+++.|..++.+++..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 554 55555555555 5555555555555544443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-23 Score=248.32 Aligned_cols=442 Identities=10% Similarity=0.053 Sum_probs=330.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1088)
|++++..+|.+..+|..++.. ...|+++.|..+|++++.. .|.....|..++..+...|+++.|..+|.+++.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--- 74 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--- 74 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Confidence 678889999999999999884 7789999999999999865 477788999999999999999999999999987
Q ss_pred CCCCchhhHhhHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCcHHHHHHHHHHHHh---------cCCHHHHHHHH
Q 001392 337 KPHEFIFPYYGLGQ-VQLKLGDFRSALT----NFEKVLEI---YPDNCETLKALGHIYVQ---------LGQIEKAQELL 399 (1088)
Q Consensus 337 ~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~ 399 (1088)
..| .+..|..++. +....|+++.|.. .|++++.. +|.+..+|...+.+... .|+++.|..+|
T Consensus 75 ~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 75 KVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp TCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred cCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 334 4556777664 3345677776655 77777654 45677888887777665 67888999999
Q ss_pred HHHHHhCCCCH--HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 400 RKAAKIDPRDA--QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 400 ~k~l~~~p~~~--~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
++++. .|... ..|....... ..+. ..+ ...+....+++..|...|.....
T Consensus 154 ~~al~-~P~~~~~~~~~~~~~~e~~~~~-~~~-------------------------~~~l~~~~~~~~~A~~~~~~~~~ 206 (530)
T 2ooe_A 154 QRGCV-NPMINIEQLWRDYNKYEEGINI-HLA-------------------------KKMIEDRSRDYMNARRVAKEYET 206 (530)
T ss_dssp HHHTT-SCCTTHHHHHHHHHHHHHHHCH-HHH-------------------------HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHh-chhhhHHHHHHHHHHHHHhhch-hHH-------------------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 99888 56542 2222222211 1110 000 00011123456667666655321
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCc-------chHHHHhHHHHHHh----cCCH----
Q 001392 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN-------KVTVLFNLARLLEQ----IHDT---- 541 (1088)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~la~~~~~----~g~~---- 541 (1088)
.. ..+.... ...+|. ...+|......... .++.
T Consensus 207 ~~------------------------------~~l~~~~--~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~ 254 (530)
T 2ooe_A 207 VM------------------------------KGLDRNA--PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLIT 254 (530)
T ss_dssp HH------------------------------HHCCSSS--CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHH
T ss_pred HH------------------------------HHhcccc--ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHH
Confidence 10 0000000 001121 12344433332222 1232
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-HCCCChhHHHhhhhhhhcc
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNLQ-------LSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~l~~al~-~~p~~~~~~~~l~~~~~~~ 606 (1088)
..++..|++++..+|.++.+|+.++.++.. .|+++ +|+.+|++++. +.|+++.+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999886 79987 89999999997 8999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHH-H
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV-L 685 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~-l 685 (1088)
|++++|...|++++...|.....+++.++.+ +... |++++|..+|.++++..|.+...+...+.+ +
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 9999999999999998776323577778877 6666 999999999999999999887777776666 3
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhh
Q 001392 686 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 763 (1088)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~La~~~~~~ 763 (1088)
...|++++|..+|+++++..| +++.+|.+++.++...|++++|..+|++++...+.++. ..++...+......
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHcCChhHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999998 78999999999999999999999999999997544332 55777778888889
Q ss_pred ccHHHHHHHHHHHHHhCCCC
Q 001392 764 EQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 764 g~~~~A~~~l~~al~~~p~~ 783 (1088)
|+.+.+..++.++++..|.+
T Consensus 477 G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHCchh
Confidence 99999999999999999954
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=251.05 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=251.7
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 137 LLLAKGEVEQASS-AFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 137 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
++...|+|++|+. .|.+++...|.++ .+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCc
Confidence 6677788999998 8888888877764 568888999999999999999999999988888 677888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
++++|+..|++++.++|++..++..+|.++...|+ +.+|+..|.+++..+|.+...+..++....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhh------------
Confidence 99999999999999999888889999998888888 888999999998888887755543322100
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
.......+..++.++ ..|++++|+.+|.+++.. .|. ...++..+|.++...|++++|+.+|++++
T Consensus 178 ---------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 178 ---------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000112333556666 889999999999999984 445 67889999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC----
Q 001392 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE---- 444 (1088)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~---- 444 (1088)
..+|.++.++..+|.++...|++++|+.+|.+++..+|.++.++..+|.++ ..|++++|+..|++++.+.|....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999887522
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 445 --EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 445 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
.....++..+|.++...|++++|..++.+++.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 22378999999999999999999999987765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=243.61 Aligned_cols=279 Identities=13% Similarity=0.098 Sum_probs=196.2
Q ss_pred HHHHHHHhhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 114 TQYYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
...+..+....+.++ ..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556655555554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHhhchHHhHHHHHHHHHH
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------AVMDLQANEAAGIRKGMEKMQR 259 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------a~~~~~~~~~~~~~~Al~~~~~ 259 (1088)
..+|.+ ..++..+|.++..+|++++|+..|++++.++|++..++..+ |.++...|+ +++|+..|.+
T Consensus 127 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV---LEGVKELYLE 202 (365)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH---HHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh---HHHHHHHHHH
Confidence 999999 78899999999999999999999999999999876666554 777777777 8888888888
Q ss_pred HHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001392 260 AFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1088)
Q Consensus 260 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1088)
++..+|. ++.++..+ |.++...|++++|+.+|.+++. .
T Consensus 203 al~~~p~~~~~~~~~~l-------------------------------------~~~~~~~g~~~~A~~~~~~al~---~ 242 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGL-------------------------------------GVLFHLSGEFNRAIDAFNAALT---V 242 (365)
T ss_dssp HHHHSCSSCCHHHHHHH-------------------------------------HHHHHHHTCHHHHHHHHHHHHH---H
T ss_pred HHHhCcCccCHHHHHHH-------------------------------------HHHHHHCCCHHHHHHHHHHHHH---h
Confidence 8888877 56555444 4455555555555555555554 2
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------
Q 001392 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--------- 408 (1088)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~--------- 408 (1088)
.|....++..+|.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 34445555666666666666666666666666666666666666666666666666666666666665544
Q ss_pred ---CHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 409 ---DAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 409 ---~~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
+..+|..++.++ ..|+.+.+.....+.+
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 245566666666 6666666555554433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=244.32 Aligned_cols=294 Identities=19% Similarity=0.191 Sum_probs=241.6
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001392 149 SAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1088)
Q Consensus 149 ~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 224 (1088)
..+...+...+.+ ...++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++..+|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444 4459999999999999999999999999999998 7789999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 001392 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1088)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 304 (1088)
.++|++..++..+|.++...|+ +++|+..|.+++..+|.+..++..++ ..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~ 176 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKK---------------------------GS 176 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCccchHHHhhhc---------------------------cc
Confidence 9999999999999999999998 99999999999999887665443332 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1088)
...+..+|.++...|++++|+.+|.+++.. .|. ...+++.+|.++...|++++|+.+|++++...|.++.++..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 245667889999999999999999999984 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-------CCHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-------VPIEVLNNI 454 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~l 454 (1088)
|.+|...|++++|+.+|++++..+|+++.++..+|.++ ..|++++|+..|++++.+.|..... ....++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999998874332 125789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 001392 455 GVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 455 ~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+.++...|+.+.+.....+.+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999888876544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=241.01 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=231.8
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChhH
Q 001392 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~~~p~~~~~ 198 (1088)
++.++|.++.+|..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++ ..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999999 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+|+.+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|+ +++|+..|++++.++|.+..+|+.+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 99999999999999999998877777776
Q ss_pred Hh-cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC-
Q 001392 279 FF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG- 356 (1088)
Q Consensus 279 ~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g- 356 (1088)
.. .|.+++|+ .+.++.+|.+++. ..|.+..+|+.++.++...|
T Consensus 245 ~~l~~~~~eA~--------------------------------~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 245 SNTTGYNDRAV--------------------------------LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTTCSCSHHH--------------------------------HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCG
T ss_pred HHhcCcchHHH--------------------------------HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCc
Confidence 66 33323332 2334577777777 56778888888898888887
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Q 001392 357 -DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKA-AKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 357 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~k~-l~~~p~~~~~~~~la~l~ 420 (1088)
++.+|+..+.++ +.+|+++.++..+|.+|...| .+++|+.+|+++ ++++|.....|..++..+
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 688999999888 888999999999999998874 258999999999 899999999999888877
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=233.34 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=195.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
++..++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL--------------AV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--------------a~-~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
+...|++++|+..|.+++..+|.+..++..+ +. ++...|+ +.+|+..+.+++..+|.++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-- 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECRTLLHAALEMNPNDAQ-- 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH---HHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHHHHHHHHHhhCCCCHH--
Confidence 9999999999999999999999887776665 33 3444444 66666666666666665553
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHH
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1088)
++..+|.++...|++++|+.+|.+++. ..|....++..+|.+
T Consensus 174 -----------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 174 -----------------------------------LHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGAT 215 (327)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 344444444455555555555555554 234445556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 001392 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------------DAQAFIDLGEL 419 (1088)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~------------~~~~~~~la~l 419 (1088)
+...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++...|. ++.++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666 56666666666
Q ss_pred H-hcCCHHHHHHHHHHHHHHHHh
Q 001392 420 L-ISSDTGAALDAFKTARTLLKK 441 (1088)
Q Consensus 420 ~-~~~~~~~A~~~~~~a~~~~~~ 441 (1088)
+ ..|+++.|...+++++...+.
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 6 666666666666665555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=239.33 Aligned_cols=259 Identities=9% Similarity=-0.020 Sum_probs=240.7
Q ss_pred CcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHCCCChhH
Q 001392 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNA 595 (1088)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~ 595 (1088)
.+...|....+++++|.++...|++++|+..|.+++..+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3457788999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH
Q 001392 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1088)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 675 (1088)
|+.+|.++...|++++|+..|++++.+.|. +..++..+|.+ +... |++++|+.+|++++.++|.+.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999988 88899999999 8888 999999999999999999999
Q ss_pred HHHhhHHHHHHh-cCCchHH-----HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHcc--CHHHHHHHHHHHHHHhcCC
Q 001392 676 YAANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYN 747 (1088)
Q Consensus 676 ~a~~~la~~l~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~Ai~~~~~al~~~~~~ 747 (1088)
.+++++|.++.. .|.+++| +..|.+++...| ++..+|+++|.++...| ++.+|+..++.+ .. .+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p 306 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SH 306 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TC
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CC
Confidence 999999999999 6666888 599999999998 78999999999999988 699999999887 44 67
Q ss_pred CCHHHHHHHHHHHHhhc---------cHHHHHHHHHHH-HHhCCCChhHHhHHHHHHHHH
Q 001392 748 TDAQILLYLARTHYEAE---------QWQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 748 ~~~~~l~~La~~~~~~g---------~~~~A~~~l~~a-l~~~p~~~~~~~nla~~~~~~ 797 (1088)
.++.++..||.+|...| .+++|+.+|+++ ++++|.....+.+++.++..+
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 77999999999999985 358999999999 999999999999998876544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=232.54 Aligned_cols=273 Identities=13% Similarity=0.080 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...++.+|..++..|++++|+.+|++++. ..|.++.+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~ 57 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEA 57 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHH
Confidence 34567788888888888888888888887 34567788
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhh--------
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------- 599 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l-------- 599 (1088)
++.+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+.++.+++...|.+..++..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888777766
Q ss_pred ------hh-hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCC
Q 001392 600 ------GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672 (1088)
Q Consensus 600 ------~~-~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 672 (1088)
+. ++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|++++..+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCC
Confidence 66 677888888888888888887776 66777778877 7777 888888888888888888
Q ss_pred CCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCC----
Q 001392 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 748 (1088)
Q Consensus 673 ~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~---- 748 (1088)
.++.++..+|.++...|++++|+.+|++++...| .++.++.++|.+|..+|++++|+..|++++...+...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 8888888888888888888888888888888776 6677888888888888888888888888888754310
Q ss_pred ------CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 749 ------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 749 ------~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
++.++..+|.++...|++++|..++++++...|.
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 4677788888888888888888888777766554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-19 Score=215.37 Aligned_cols=294 Identities=13% Similarity=0.112 Sum_probs=166.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001392 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1088)
Q Consensus 36 e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~ 115 (1088)
|..+++---.++.+|...|.+.+|+.+|++++-. +.. |++. ..+..+..++.+....++. .+.+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~-fs~n--~~LqnlLi~tAIkaD~~Rv-----------~eyI~ 1045 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSV-FSEH--RNLQNLLILTAIKADRTRV-----------MEYIN 1045 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCc-cccc--HHHHHHHHHHHHHhChhhH-----------HHHHH
Confidence 3444555566778888888888888888887622 222 3332 2222232233333322221 13333
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.++..+ .-..|.++...|.+++|..+|+++- .+..+ +...+...+++++|+++++++ +.
T Consensus 1046 kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~ 1104 (1630)
T 1xi4_A 1046 RLDNYD---------APDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NE 1104 (1630)
T ss_pred Hhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CC
Confidence 332221 1237888888888888888888862 11111 122233777888888887765 22
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001392 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1088)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la 275 (1088)
+.+|+.+|.++...|++++|+.+|.++ +++.++..++.++...|+ +++|+.+|..+.+..+.. .+-..+|
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk---yEEAIeyL~mArk~~~e~-~Idt~La 1174 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARES-YVETELI 1174 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcccc-cccHHHH
Confidence 667888888888888888888888765 677788888888888887 888888888777766432 2222355
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc
Q 001392 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1088)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1088)
.+|.+.++++....+ +. ......+..+|..+...|+|++|..+|.++- .|..++.++.+.
T Consensus 1175 faYAKl~rleele~f----I~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEF----IN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHL 1234 (1630)
T ss_pred HHHHhhcCHHHHHHH----Hh-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHh
Confidence 555555555432222 11 1112334445555555555555555555431 244555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1088)
|+++.|++++.++ .+..+|...+.++...|++..|..+..
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5555555555544 333455555555555555555544443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-19 Score=216.79 Aligned_cols=359 Identities=12% Similarity=0.072 Sum_probs=250.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001392 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1088)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1088)
+|.++...|.+++|..+|+++.. . ...+...+...+++++|+++++++ +.+.+|+.+|.++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-------~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-------N---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-------H---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCC
Confidence 56666666777777777666421 1 111222233666666666666644 44666667777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (1088)
++.+|+..|.++ +++..|..++.++ ..|++++|+.+|..+.+..+. +.+-..+|.+|.+.++++. +.
T Consensus 1120 ~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------~~Idt~LafaYAKl~rlee-le 1187 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------SYVETELIFALAKTNRLAE-LE 1187 (1630)
T ss_pred CHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------ccccHHHHHHHHhhcCHHH-HH
Confidence 777777776554 5666666666666 667777777777666654322 1222236666666666653 33
Q ss_pred HHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHH
Q 001392 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (1088)
Q Consensus 470 ~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1088)
.| +. .+ +...+..+|..+...|++++|..+|.
T Consensus 1188 ~f---I~--------------------------------------------~~-n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1188 EF---IN--------------------------------------------GP-NNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HH---Hh--------------------------------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33 11 12 33566789999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH
Q 001392 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629 (1088)
Q Consensus 550 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~ 629 (1088)
.+ ..|..++.++..+|+++.|++.+.++ .++.+|...+.++...|++..|..+... +... +.
T Consensus 1220 kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~----~d 1281 (1630)
T 1xi4_A 1220 NV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH----AD 1281 (1630)
T ss_pred hh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC----HH
Confidence 85 58999999999999999999999998 5678999999999999999999998875 3222 22
Q ss_pred HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh--cCCchHHHHHHHHHHHHhcC
Q 001392 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE--KGQFDVSKDLFTQVQEAASG 707 (1088)
Q Consensus 630 a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~--~g~~~~A~~~~~~~~~~~p~ 707 (1088)
.+..++.. |... |.+++|+.+|++++.++|.+...+..+|.++++ -+++.+++++|..-+...|-
T Consensus 1282 eLeeli~y-Ye~~------------G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1282 ELEELINY-YQDR------------GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred HHHHHHHH-HHHc------------CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 34467777 8777 999999999999999999999999888888886 45888888888876664320
Q ss_pred CCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHH----------HhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001392 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR----------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1088)
Q Consensus 708 ~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~----------~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al 777 (1088)
-..-.....|..+..+|.+.|+|+.|+...-.... .-....++.+++.....|. +....++..|..++
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 1426 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHHHHHHHh
Confidence 00013577899999999999999999943222210 0113566888888877777 45556666666655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=234.67 Aligned_cols=386 Identities=12% Similarity=0.085 Sum_probs=272.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001392 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1088)
..+|..+...|++++|+.+|.++... .++.+++.+|.+|...|++ .+|+.+|++++.. ++.+++.+|.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC-------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45788899999999999999999863 4567788999999999988 8999999999875 77889999997
Q ss_pred HHhcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 001392 386 YVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (1088)
Q Consensus 386 ~~~~g-----~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 459 (1088)
+...+ ++++|+.+|++++... ++.+++.||.+| ..+....+...+.......+.. .+..++.+|.+|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 77665 7899999999998854 455899999998 5555444444444333333221 3578888999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcC
Q 001392 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1088)
Q Consensus 460 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1088)
..+.++.+.......... ....++.+++++|.+|...|
T Consensus 153 ~~~~~~~~~~~a~~~~~~------------------------------------------a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKA------------------------------------------ALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHTCGGGGHHHHHHHHHH------------------------------------------HTTTCTTHHHHHHHHHHHTT
T ss_pred cCCCcccCHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHHcC
Confidence 998665555443322221 01123448899999999999
Q ss_pred ---CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCCChhHHHhhhhh-h--hcccch
Q 001392 540 ---DTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDW 609 (1088)
Q Consensus 540 ---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~l~~~-~--~~~g~~ 609 (1088)
++.+|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 999999999999999999888889999998765 78999999999987 8899999999998 4 567889
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHh--
Q 001392 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-- 687 (1088)
Q Consensus 610 ~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~-- 687 (1088)
.+|+.+|+++.... +..+++.||.+ |....... .++.+|+.+|+++. |.++.+.+.||.+|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y~~G~g~~--------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKL-YYEGKWVP--------ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCSSSC--------CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH-HHcCCCCC--------CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 99999999988764 67788888988 76321000 37899999999988 8899999999988887
Q ss_pred --cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 001392 688 --KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1088)
Q Consensus 688 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 761 (1088)
..++.+|+.+|+++.+. .++.++++||.+|.. ..++.+|+.+|+.+... .++.....++.+..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN-------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEA 401 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT-------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34889999999998874 357889999999885 35899999999998875 34555566665543
Q ss_pred h--hccHHHHHHHHHHHHHh
Q 001392 762 E--AEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 762 ~--~g~~~~A~~~l~~al~~ 779 (1088)
. .++..+|...+++....
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHh
Confidence 3 34555666666555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-22 Score=212.13 Aligned_cols=240 Identities=12% Similarity=0.026 Sum_probs=225.4
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-------hhHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNAL 596 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~ 596 (1088)
.+..++.+|.++...|++++|+.+|.+++..+ .++.++..+|.++...|++++|+.++.+++.+.|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56789999999999999999999999999999 889999999999999999999999999999999877 6899
Q ss_pred HhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 001392 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1088)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 676 (1088)
..+|.++...|++++|+..|++++...|. +.+ +... |++++|+..|.+++..+|.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchHH
Confidence 99999999999999999999999998775 344 6666 9999999999999999999999
Q ss_pred HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 677 a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
++..+|.++...|++++|+..|++++...| .++.++.++|.+|...|++++|+..|++++.. .+.++.++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l 213 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHH
Confidence 999999999999999999999999999997 77899999999999999999999999999998 57779999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhC------CCChhHHhHHHHH
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 793 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~nla~~ 793 (1088)
|.++...|++++|+.+|+++++++ |.+..++..++.+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 8888887777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=214.98 Aligned_cols=253 Identities=13% Similarity=0.088 Sum_probs=187.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGI 203 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~l 203 (1088)
++..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++. .|.+ ...+++.+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999998 4433 23348899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
|.++..+|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|++++..+|.++.++..+|...+..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999999888888877744444457
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC-----chhhHhhHHHHHHHc
Q 001392 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD---YEKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKL 355 (1088)
Q Consensus 284 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~ 355 (1088)
+++|+..++.++... |....+++.+|.++...|+ +++|+..|.+++......+. ...++..+|.++...
T Consensus 158 ~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 777777777766544 4445666666666666666 66666666666654322122 123455555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001392 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1088)
|++++|+.+|++++.++|+++.++..++.+.
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 5555555555555555555555555544443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=207.29 Aligned_cols=240 Identities=18% Similarity=0.187 Sum_probs=179.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1088)
.+..++.+|.+++..|++++|+.+|.+++..+ .++.++..+|.++...|++++|+..|.+++...|... ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35678889999999999999999999999988 8889999999999999999999999999998887653 5678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1088)
+.+|.++..+|++++|+..|++++.+.|. +.++...|+ +.+|+..+.+++..+|.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~----------- 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN---AEKELKKAEAEAYVNPEKAE----------- 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH---HHHHHHHHHHHHHCCHHHHH-----------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH---HHHHHHHHHHHHHcCcchHH-----------
Confidence 88999999999999999999999988886 344555565 78888888888777766554
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH
Q 001392 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1088)
++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++
T Consensus 141 --------------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 141 --------------------------EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp --------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHH
Confidence 444555555555556666666666555 234455666667777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 001392 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGE 418 (1088)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~------p~~~~~~~~la~ 418 (1088)
|+.+|++++..+|+++.++..+|.++...|++++|+.+|++++.+. |.+..++..++.
T Consensus 192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777766 666666555544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-22 Score=215.49 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=224.7
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhH----HHhh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA----LSML 599 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~----~~~l 599 (1088)
++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++.+++. .|.++.. +..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999 5555544 8999
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHh
Q 001392 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1088)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 679 (1088)
|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+..|++++..+|.++.++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY-FYNK------------GNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH-HHHT------------TCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH-HHHc------------cCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 99999999999999999999999887 67788899999 9988 9999999999999999999999999
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcCCCC------H
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTD------A 750 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~al~~~~~~~~------~ 750 (1088)
.+|......+++++|+..|+++++..| .++.+++.+|.++..+|+ +.+|+..|++++......++ .
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 999444445699999999999999998 778999999999999999 99999999999998633333 3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.++..+|.+|...|++++|+.+|++++.++|+++.++-.++.+
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 6888999999999999999999999999999999888777765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=228.75 Aligned_cols=317 Identities=17% Similarity=0.113 Sum_probs=162.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..+|..++..|++++|+..|.++... .++.+++.+|.+++..|++ .+|+.+|++++.. + +.+++.+|.++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-PRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHH
Confidence 34566777777777777777776554 3566666777777766666 6777777777655 2 344666677555
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 209 KLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 209 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
..+ ++++|+.+|++++.. +++.+++.||.+|...+....-.+++..+.++... .++.+++.++.+|...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 554 666777777777663 33446677777766655421123344444444332 234555566666666654
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHc----C
Q 001392 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----G 356 (1088)
Q Consensus 284 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g 356 (1088)
++.+............ ...+.+++.+|.+|...| ++++|+.+|.++.. ..+.....++.+|.+|... +
T Consensus 157 ~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCC
Confidence 4443333222221110 112236666666666666 66666666666665 3344444445666666544 5
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC-----CHHHH
Q 001392 357 DFRSALTNFEKVLEIYPDNCETLKALGHI-Y--VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-----DTGAA 428 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~-----~~~~A 428 (1088)
++++|+.+|+++. |+++.+++.+|.+ | ...+++++|+.+|+++... .++.+++.||.+|..| ++.+|
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666666665 5566666666665 3 3455666666666666543 3566666666666433 66666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 001392 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALG 476 (1088)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~al~ 476 (1088)
+.+|+++. +. .+..++++|.+|.. ..++.+|+.+|+++..
T Consensus 307 ~~~~~~Aa---~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 307 EAHFEKAV---GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHTTT---TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 66666554 11 35556666655554 2366666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=200.94 Aligned_cols=199 Identities=18% Similarity=0.116 Sum_probs=148.0
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1088)
|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888 67788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 205 LCRYKL-----------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 205 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
.++... |++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|+++++++ .++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-cchHHHHH
Confidence 888888 888888888888888888888888888888888877 888888888888887 77777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1088)
+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+..|.++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777777777777666543 455566666666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=200.32 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..++..+|.++...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 5 ~~~~~~lg~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 457788899998888776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 163 PALLGQACVEFNR-----------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 163 ~a~~~la~~~~~~-----------g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
.+++.+|.++... |++++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++++ +++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 9999999999999 99999999999999999999 7789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 232 ~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
.+++.+|.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|+..++++-
T Consensus 152 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999988654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-21 Score=219.58 Aligned_cols=316 Identities=17% Similarity=0.193 Sum_probs=232.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----Ch
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CP 196 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~ 196 (1088)
.....++.+|.+++..|++++|+.+|++++...|.++ .++..+|.+++..|++++|+..|++++...+. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4556778888888999999999999999888888874 57788888888888888888888888776311 12
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhchHHh----------HHHHHHHHHHH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAG----------IRKGMEKMQRA 260 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~~~~~~----------~~~Al~~~~~a 260 (1088)
..++..+|.++..+|++++|+..|.+++.+.|.. ..++..+|.++...|+... ..++...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 5567778888888888888888888888776532 2245555555554443000 0000000
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001392 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1088)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1088)
++.|+.++..++... ...+....++..+|.++...|++++|+.+|.+++...+.
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 444444444444321 122334567888899999999999999999998874432
Q ss_pred C---CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 001392 338 P---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1088)
Q Consensus 338 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~ 408 (1088)
. +....++..+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|++++|+.+|.+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 2 2234478889999999999999999999998876544 678899999999999999999999999987544
Q ss_pred C------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 001392 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 409 ~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
. ..++..+|.++ ..|++++|+.++++++.+.+..+... ...++..+|.++...|+...+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 3 67888999999 99999999999999999987754322 2578888999999988764433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=198.20 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=94.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 001392 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (1088)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 127 (1088)
...+..|+|..|+..++.....++. ........++.+|+.+|+.. .|+..++. .+|..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~-----------~al~~~~~---~~~~~ 64 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYG-----------VVLDEIKP---SSAPE 64 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHH-----------HHHHHSCT---TSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHH-----------HHHHHhcc---cCChh
Confidence 4456667777777766665444321 12334455566666666554 55554433 23444
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
..++..++..+...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHH
Confidence 455555666666666666666666666654 466666666666666666666666666665 554 455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
++..+|++++|+..|++++..+|++..
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~ 165 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATL 165 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHH
Confidence 666666666666666666666666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-20 Score=202.75 Aligned_cols=261 Identities=10% Similarity=0.026 Sum_probs=169.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
...++..|+|..|+..++++...+|.+ ..+...++.+|+..|+++.|+..++.. +|.. ..++..++..+...|++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-LQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-HHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-HHHHHHHHHHHcCCCcH
Confidence 455667788888887777766666655 346677777777888887777766541 3332 44556677777777777
Q ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 214 GKARQAFQRALQL--DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 214 ~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
++|+..+++++.. +|+++.+++.+|.++...|+ +++|+..|.+ |.++.++..++.++...|++++|+..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~---~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN---PDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC---HHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC---HHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777764 47777777777777777777 7777777776 667777777777777777777777777
Q ss_pred HHHHhhcCCCCCchHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 292 ETALAVTNHGPTKSHSYYNLA--RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
+.++... |.........+ ..+...|++++|+.+|++++. ..|..+.+++.+|.++...|++++|+..|++++
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD---KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7666553 22222221111 222334666666666666665 344556666666666666666666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHH
Q 001392 370 EIYPDNCETLKALGHIYVQLGQIEK-AQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~k~l~~~p~~~~~~ 413 (1088)
..+|+++.++.++|.++...|+..+ +..++++++.++|+++.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 6666666666666666666666654 3456666666666666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=220.79 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=215.5
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCC
Q 001392 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 408 (1088)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~k~l~~------~p~ 408 (1088)
......++.+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|.+++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44555677788888888888888888888888887763 57778888888888888888888888766 244
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 001392 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 466 (1088)
Q Consensus 409 ~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------------------~~~ 466 (1088)
...++..+|.++ ..|++++|+.++.+++.+.+..+... ...++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 467788888888 88899999999998888877653321 14688899999999999 999
Q ss_pred HHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHH
Q 001392 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546 (1088)
Q Consensus 467 A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 546 (1088)
|+.+|.+++...... ...+....++.++|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-------------------------------------GDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------------------------cCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999888742100 0234466789999999999999999999
Q ss_pred HHHHHHHHcCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC------hhHHHhhhhhhhcccchHHHHH
Q 001392 547 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 547 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 614 (1088)
+|.+++...|.. ..++..+|.++...|++++|+.++.+++.+.|.. ..++..+|.++...|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876543 3489999999999999999999999999887665 5688889999999999999999
Q ss_pred HHHHhhhcCCCCC-----hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 615 TFRAASDATDGKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 615 ~~~~al~~~~~~d-----~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
.|.+++...+... ..++..+|.+ |... |++++|+.+|++++..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNA-YTAL------------GNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHH
Confidence 9998887543211 2234444444 4444 5555555555555444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=214.80 Aligned_cols=279 Identities=16% Similarity=0.071 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcc---
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--- 524 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (1088)
...+..+|..++..|++++|+.+|++++... |.+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-------------------------------------------TEDLRT 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------------------------------------------ccChhH
Confidence 4567789999999999999999999999842 223
Q ss_pred -hHHHHhHHHHHHhcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------CCC
Q 001392 525 -VTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGK 591 (1088)
Q Consensus 525 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~ 591 (1088)
..+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++.+++.+ .|.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 368899999999999999999999999987 5777899999999999999999999999999998 455
Q ss_pred ChhHHHhhhhhhhcccc-----------------hHHHHHHHHHhhhcCCC-----CChHHHHHhhhHHHHHHhhhhhcC
Q 001392 592 YPNALSMLGDLELKNDD-----------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRA 649 (1088)
Q Consensus 592 ~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~ 649 (1088)
...++..+|.+|...|+ +++|+..|.+++...+. ....++..+|.+ |...
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~------- 236 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT-------
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc-------
Confidence 66689999999999999 99999999998875321 123477788888 8888
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCH------HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchhHHHHHHH
Q 001392 650 PKLEATHLEKAKELYTRVIVQHTSNL------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAH 722 (1088)
Q Consensus 650 ~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~la~ 722 (1088)
|++++|+.+|++++...|... .++..+|.++...|++++|+.+|++++...+... ......++.++|.
T Consensus 237 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 237 -----GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999877533 3889999999999999999999999999886321 1122678999999
Q ss_pred HHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 723 VYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 723 ~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
+|..+|++++|+.+|++++...+...+ ..++..+|.+|...|++.+|+.+|++++.+.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998655444 668889999999999999999999999999864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=204.24 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...+...|..++..|++++|+.+|++++...+. ..+....+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 45 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------------------------DLKTLSAI 45 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc---------------------------------------cHHHHHHH
Confidence 345677899999999999999999999984210 00112578
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHH------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh------H
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------A 595 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~ 595 (1088)
+..+|.++...|++++|+.++.+++.. .|....++..+|.++...|++++|+.++.+++.+.|.... +
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 889999999999999999999999876 4456789999999999999999999999999998765433 8
Q ss_pred HHhhhhhhhcccc--------------------hHHHHHHHHHhhhcCCC-----CChHHHHHhhhHHHHHHhhhhhcCh
Q 001392 596 LSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAP 650 (1088)
Q Consensus 596 ~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~~ 650 (1088)
+..+|.++...|+ +++|+..|.+++...+. ....++..+|.+ |...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~-------- 196 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL-------- 196 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--------
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh--------
Confidence 8899999999999 99999999998775311 123467778888 8888
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC------HHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchhHHHHHHHH
Q 001392 651 KLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHV 723 (1088)
Q Consensus 651 ~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~la~~ 723 (1088)
|++++|+.+|++++...|.. ..++..+|.++...|++++|+.+|++++...+... ......++.++|.+
T Consensus 197 ----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 197 ----GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999999999876542 34889999999999999999999999999876321 11226789999999
Q ss_pred HHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 724 YFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 724 ~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
|..+|++++|+.+|++++..++...+ ..++..+|.+|...|++++|..+|++++.+.+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765444 668889999999999999999999999998875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=195.37 Aligned_cols=248 Identities=14% Similarity=0.114 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHHhhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 001392 106 KEEHFILATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~----p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 181 (1088)
..++|++|+..|.+++... |.++.+++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4688999999999999973 456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHH
Q 001392 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1088)
+..|++++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++......++.. ...|+ +.+|+..+.+++
T Consensus 97 ~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHHHH
Confidence 99999999999998 77899999999999999999999999999999998776666544 45566 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001392 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1088)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1088)
...|.+...+. ++.++...++...|+..+..++...+. .+..+.+++.+|.++...|++++|+.+|.+++. ..|.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH 247 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCch
Confidence 99888765543 566666667777777777666543211 011234555555555555555555555555554 2222
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 341 FIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
. +...+.++...|++++|+..|
T Consensus 248 ~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T---CHHHHHHHHHHHHHHHC----
T ss_pred h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 222344555555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=209.50 Aligned_cols=286 Identities=20% Similarity=0.226 Sum_probs=216.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQL------DPE 229 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~ 229 (1088)
+.....++.+|.+++..|+|++|+.+|++++...|.++. .+++.+|.++...|++++|+..|++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344667788899999999999999999999999888742 56788899999999999999999998887 455
Q ss_pred CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHH
Q 001392 230 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1088)
Q Consensus 230 ~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 309 (1088)
...++..+|.++...|+ +.+|+..|.+++...+.. ...+....++.
T Consensus 125 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~-------------------------------~~~~~~~~~~~ 170 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGR---FDEAAICCERHLTLARQL-------------------------------GDRLSEGRALY 170 (411)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHH-------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHh-------------------------------hchHHHHHHHH
Confidence 56667777777777777 777777777776652110 11122335566
Q ss_pred HHHHHHHhcCC-----------------HHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 310 NLARSYHSKGD-----------------YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 310 ~la~~~~~~g~-----------------~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
.+|.+|...|+ +++|+.+|.+++... +..+....++..+|.++...|++++|+.+|++++
T Consensus 171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666666666 677777776665422 2233445577888888888888888888888888
Q ss_pred HhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 370 EIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 370 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
...+.. ..++..+|.+|...|++++|+.+|++++...|.. ..++..+|.++ ..|++++|+.++++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775533 2378888999999999999999999988876643 67888899998 8999999999999999
Q ss_pred HHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 437 TLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 437 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
.+.+..+.. ....++..+|.++...|++++|+.+|++++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 887765322 124688889999999999999999999999854
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=189.11 Aligned_cols=215 Identities=19% Similarity=0.218 Sum_probs=127.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.. ..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHH
Confidence 345677788888888888888888888888888888888888888888888888888888888888777 6667778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..+.+++..+|.++.++.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~-------------- 163 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ---PKLALPYLQRAVELNENDTEARF-------------- 163 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHCTTCHHHHH--------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccHHHHH--------------
Confidence 8888888888888888888777777777777777777776 77777777777776665553333
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1088)
.+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|+
T Consensus 164 -----------------------~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 164 -----------------------QFGMCLANEGMLDEALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp -----------------------HHHHHHHHHTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred -----------------------HHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333333344444444444444443 223334444455555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 001392 367 KVLEIYPDNCETLKALGHI 385 (1088)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~ 385 (1088)
+++..+|++..++..++.+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 5555555555554444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=197.03 Aligned_cols=282 Identities=21% Similarity=0.228 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPENVE 232 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 232 (1088)
...++..|.+++..|++++|+..|++++...|.++ ..++..+|.++...|++++|+..|.+++.+ .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 45677888888888888888888888888888874 356778888888888888888888888776 233345
Q ss_pred HHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 001392 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312 (1088)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la 312 (1088)
++..+|.++...|+ +++|+..+.+++...|... ..+....++..+|
T Consensus 85 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~-------------------------------~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 85 ASGNLGNTLKVLGN---FDEAIVCCQRHLDISRELN-------------------------------DKVGEARALYNLG 130 (338)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhc-------------------------------CchHHHHHHHHHH
Confidence 55666666666666 6666666666655433211 1111234666777
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHHhc---CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 313 RSYHSKGD--------------------YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 313 ~~~~~~g~--------------------~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
.++...|+ +++|+.+|.+++... +..+....++..+|.++...|++++|+.++++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777 777777777766522 2233445578888888889999999999998888
Q ss_pred HhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001392 370 EIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1088)
Q Consensus 370 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~ 436 (1088)
...+.. ..++..+|.++...|++++|+.++.+++...|.. ..++..+|.++ ..|++++|+.++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 764332 3488889999999999999999999998876554 67888899999 9999999999999999
Q ss_pred HHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 437 TLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 437 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
...+..+... ...++..+|.++...|++++|..+|++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9877654322 1467888999999999999999999999885
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-18 Score=182.47 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=160.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAI 199 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1088)
+|.++.+++.+|.+++..|++++|+.+|++++. |.++.+++.+|.++.. .+++++|+.+|++++..+ + +.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-HHH
Confidence 467777888888888888888888888888776 6677778888888887 788888888888877764 3 566
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 200 RLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 200 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
++.+|.++.. .+++++|+..|++++.. +++.+++.+|.++.. .++ +++|+.+|++++..+ ++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~--- 146 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLN--DG--- 146 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTT--CH---
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcC--cH---
Confidence 7777777777 77777777777777765 367777777777776 666 677777777666643 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
.+++.+|.+|.. .+++++|+.+|.+++.. ....+++.
T Consensus 147 ----------------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 187 (273)
T 1ouv_A 147 ----------------------------------DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFN 187 (273)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHH
Confidence 445555555555 66666666666666652 23456666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 348 LGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQA 412 (1088)
Q Consensus 348 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~k~l~~~p~~~~~ 412 (1088)
+|.+|.. .+++++|+.+|+++++..| +.++..+|.+|.. .+++++|+.+|++++...|.+...
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776 6777777777777766643 6666777777776 677777777777777776654433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=191.99 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=214.4
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA-------KGEV-------EQASSAFKIVLE-ADRDNVPALLGQACVEFNR 175 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~ 175 (1088)
.+|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 589999999999999999999999999874 5885 999999999999 6999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hchHHhHHHHH
Q 001392 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254 (1088)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~~~Al 254 (1088)
|++++|...|++++...|.+...++..+|.++...|++++|+..|+++++..|.+..++...+.+... .|+ +++|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence 99999999999999999988433899999999999999999999999999999998888877766543 577 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1088)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1088)
..|+++++.+|.++.++..++.++...|+++.|..+|++++.....+| ....+|..++..+...|+++.|..++.++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987533334 3567888888888889999999999999888
Q ss_pred hcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001392 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1088)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1088)
..|..+.... ++.+ ....+++.++|.++..+..||.
T Consensus 270 ~~p~~~~~~~----~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 270 AFREEYEGKE----TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HTTTTTSSCH----HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred Hcccccccch----HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 6554333221 1111 1111455677888888777663
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-18 Score=182.05 Aligned_cols=226 Identities=18% Similarity=0.248 Sum_probs=182.9
Q ss_pred HHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALL 166 (1088)
Q Consensus 91 ~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~ 166 (1088)
..++.+|... ...+++++|+.+|.+++. |.++.+++.+|.++.. .|++++|+.+|++++..+ ++.+++
T Consensus 7 ~a~~~lg~~~----~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKS----YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHH----HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 4566677666 335789999999999998 7889999999999999 999999999999999885 899999
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 167 GQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 167 ~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
.+|.++.. .+++++|+.+|++++..+ + +.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999974 4 6789999999999 999999999999999976 688899999
Q ss_pred HHHHh----hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 001392 239 VMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1088)
Q Consensus 239 ~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~ 314 (1088)
.++.. .++ +++|+.+|++++... ++ .+++.+|.+
T Consensus 154 ~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~-------------------------------------~a~~~lg~~ 191 (273)
T 1ouv_A 154 SLYDAGRGTPKD---LKKALASYDKACDLK--DS-------------------------------------PGCFNAGNM 191 (273)
T ss_dssp HHHHHTSSSCCC---HHHHHHHHHHHHHTT--CH-------------------------------------HHHHHHHHH
T ss_pred HHHHcCCCCCCC---HHHHHHHHHHHHHCC--CH-------------------------------------HHHHHHHHH
Confidence 99988 777 888999888887653 33 445555556
Q ss_pred HHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 001392 315 YHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNC 376 (1088)
Q Consensus 315 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~ 376 (1088)
|.. .+++++|+.+|.+++.. ....+++.+|.+|.. .+++++|+.+|+++++..|...
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 666 66666666666666652 125566667777776 6777777777777777665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=197.02 Aligned_cols=231 Identities=14% Similarity=0.123 Sum_probs=159.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEAD----RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1088)
+..+...|++++|+..|.+++... |.++.+++.+|.+++..|++++|+..|++++..+|.+ ..++..+|.++...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHc
Confidence 334455688999999999999873 4567889999999999999999999999999999998 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001392 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1088)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1088)
|++++|+..|++++.++|.++.++..+|.++...|+ +++|+..|.+++..+|.++.....++.+ ...|+++.|...
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999887555444332 444555555555
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1088)
+..++...+.. ... ..++..+...++.++|+..+.+++...+. .+....+++.+|.++...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKE---QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCC---STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcc---hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555433221 111 22444444555555555555554431000 00112334444444444444444444444444
Q ss_pred HhCCC
Q 001392 370 EIYPD 374 (1088)
Q Consensus 370 ~~~p~ 374 (1088)
..+|.
T Consensus 243 ~~~p~ 247 (275)
T 1xnf_A 243 ANNVH 247 (275)
T ss_dssp TTCCT
T ss_pred hCCch
Confidence 44443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=176.22 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..++..||.+|...|+.+ +|+..|+++++++|+++.+++.+|.+|...|++++|+..+..++...|+++
T Consensus 5 ~~iy~~lG~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFD-----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 456677777777766655 788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.++..+|.++...+++..|+..+.+++...|.+ ..++..+|.++..+|++++|+..|+++++++|.++.++..+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 888888888888888888888888888888887 6677888888888888888888888888888888888888888888
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
..|+ +++|+..|+++++++|+++
T Consensus 153 ~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred HCCC---HHHHHHHHHHHHhCCccCH
Confidence 8887 8888888888888887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-16 Score=184.93 Aligned_cols=451 Identities=9% Similarity=-0.052 Sum_probs=327.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYKRA 188 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~a 188 (1088)
+-+..|+..+..+|.+...|..++..+...+.+..|...|++++...|.+...|...+......++ +..+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 557788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCC--CChhHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhc------hHH
Q 001392 189 LQVHP--SCPGAIRLGIGLCRYKLGQL--------GKARQAFQRALQL----DPENVEALVALAVMDLQAN------EAA 248 (1088)
Q Consensus 189 l~~~p--~~~~~~~~~lg~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~~------~~~ 248 (1088)
+...| .+ ..+|..........++. +....+|++|+.. +|.....|.....+....+ ..+
T Consensus 130 l~~~~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKELGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSSSCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99984 34 44666655545555443 3445888988874 6767777777766544211 112
Q ss_pred hHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 001392 249 GIRKGMEKMQRAFEIYPYC-A-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1088)
Q Consensus 249 ~~~~Al~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1088)
.++.+..+|.+++.+ |.. . .+|......-...+.. .+..++ . .....|..|..
T Consensus 209 ~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~--------------------~---e~~~~y~~Ar~ 263 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHI--------------------G---ELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHH--------------------H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHH--------------------H---HhhHHHHHHHH
Confidence 377888999999864 432 2 2221111110000000 010000 0 11123444444
Q ss_pred HHHHHHHh---c----CCC---------C-------CchhhHhhHHHHHHHcC-------CHHHHHHHHHHHHHhCCCcH
Q 001392 327 YYMASVKE---I----NKP---------H-------EFIFPYYGLGQVQLKLG-------DFRSALTNFEKVLEIYPDNC 376 (1088)
Q Consensus 327 ~~~~al~~---~----~~~---------~-------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~ 376 (1088)
.|...... + +.. | .....|......-...+ ........|++++...|.++
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 44332211 0 000 0 00112222222221111 13456788999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC------CC---
Q 001392 377 ETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG------EE--- 445 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~-~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~------~~--- 445 (1088)
.+|+..+..+...|+.+.|+ .+|.+++...|.+...|+.++.+. ..|+++.|..+|++++...+... .+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999999999999999997 999999999999999999999999 99999999999999998753110 01
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCC
Q 001392 446 --------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 517 (1088)
Q Consensus 446 --------~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1088)
....+|...+.+..+.|..+.|..+|.+|+...
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--------------------------------------- 464 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--------------------------------------- 464 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---------------------------------------
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------------------------------------
Confidence 123567778888888999999999999998731
Q ss_pred cCCCCcchHHHHhHHHHHHhcC-CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---CCh
Q 001392 518 VELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG---KYP 593 (1088)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~ 593 (1088)
++....++...|.+....+ +++.|..+|+.+++..|+.+..+...+......|+.+.|..+|++++...| ...
T Consensus 465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1123455666666666655 489999999999999999999999999999999999999999999999988 356
Q ss_pred hHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHH
Q 001392 594 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (1088)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a 630 (1088)
.+|..+..+-...|+.+.+..++.++....|+.+...
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 6888999999999999999999999999998865543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=202.80 Aligned_cols=238 Identities=12% Similarity=0.015 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHhchhhhh---hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 001392 83 IAILNALGVYYTYLGKIETK---QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEAD 158 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~---~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~ 158 (1088)
+..+..+...|+........ ...-.+.+.+|+..+..+....|.++.+++.+|.++...|++ ++|+.+|++++..+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 33444455555554433321 112356688999999999999999999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPE 229 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~ 229 (1088)
|+++.+++.+|.+++..|++++|+..|++++..+|+ ..++..+|.++..+ |++++|+..|+++++++|+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 47899999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhh--------chHHhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001392 230 NVEALVALAVMDLQA--------NEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1088)
Q Consensus 230 ~~~a~~~la~~~~~~--------~~~~~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 298 (1088)
+..+|..+|.++... |+ +++|+..|++++.++| .++.+++.+|.+|...|++++|+..+.+++...
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999988 77 9999999999999999 888777777777777777777777777776554
Q ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1088)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1088)
|....++..++.++...|++++|+..+
T Consensus 289 ---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 289 ---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777776666666666544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=184.70 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
...+..+|.+|...|. +.+|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+.
T Consensus 23 ~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 91 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGD-----------YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA 91 (243)
T ss_dssp ------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhC-----------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch
Confidence 3445556666665555 44999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++...|.+..++..+|.++.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 7789999999999999999999999999999999999999999999
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~ 316 (1088)
..|+ +++|+..|.+++..+|.++.++..++.++...|++++|...+++++... |....++..++.+..
T Consensus 171 ~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 171 NEGM---LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHTC---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC---TTCHHHHHHHTC---
T ss_pred HcCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC---cchHHHHHHHHHHHh
Confidence 9999 9999999999999999999888888888888888888888888887654 444566655554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=182.44 Aligned_cols=213 Identities=19% Similarity=0.148 Sum_probs=151.9
Q ss_pred cCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001392 123 IDMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1088)
Q Consensus 123 ~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1088)
.+|.. +.+++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHH
Confidence 45554 67888899999999999999999999999999899999999999999999999999999999988887 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
.+|.++...|++++|+..|.+++. ..|.+..++..+|.++...|+ +++|+..|.+++..+|.++.++..+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l----- 181 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK---PAQAKEYFEKSLRLNRNQPSVALEM----- 181 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHH-----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcccHHHHHHH-----
Confidence 888889889999999988888888 677777777777777777777 7777777777777776665444333
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHH
Q 001392 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1088)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1088)
|.++...|++++|+.+|.+++. ..|....++..++.++...|+++
T Consensus 182 --------------------------------a~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 182 --------------------------------ADLLYKEREYVPARQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp --------------------------------HHHHHHTTCHHHHHHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHH
T ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHH
Confidence 3344444444444444444443 22333444444555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHH
Q 001392 360 SALTNFEKVLEIYPDNCETL 379 (1088)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~ 379 (1088)
+|..++++++...|+++.+.
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 55555555555555544433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-18 Score=176.03 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.++.+++.+|.+++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHH
Confidence 455666667777777777777777777777777777777777777777777777777777777777666666 5556666
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 204 GLCRYKL-GQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 204 g~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
|.++... |++++|+..|++++. ..|.+..++..+|.++...|+ +++|+..|.+++..+|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 6666666 666666666666666 344444555555555555555 5555555555555544443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=174.82 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=147.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.|.++.+++.+|.+++..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|.+++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34445555555555555555555555555555555555 44455555555555555555555555555555555555555
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 317 (1088)
|.++...+ |+++.|+.+++.++. .+..|....+++.+|.++..
T Consensus 83 ~~~~~~~~------------------------------------~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 83 GWFLCGRL------------------------------------NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHTTT------------------------------------CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc------------------------------------CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHH
Confidence 55544440 444444444444444 22334555777888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcCCHHHHH
Q 001392 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQ 396 (1088)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~ 396 (1088)
.|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++...| .+..++..++.++...|+.+.|.
T Consensus 126 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888887 3466677888889999999999999999999988888 88888888888888889999999
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 001392 397 ELLRKAAKIDPRDAQAFIDL 416 (1088)
Q Consensus 397 ~~~~k~l~~~p~~~~~~~~l 416 (1088)
.+++.+....|+++.+...+
T Consensus 203 ~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHh
Confidence 99888888888888776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-18 Score=180.65 Aligned_cols=211 Identities=16% Similarity=0.104 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..|.+++..+|.++.++..++.++
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME---PKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444 44444444444444554454555555555
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCH
Q 001392 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1088)
Q Consensus 279 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1088)
...|++++|+.++.+++. .+..|....++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCCH
Confidence 555555555555555544 223455567788888888889999999999999887 4466778899999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1088)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~l 416 (1088)
++|+.+|++++...|.+..++..++.++...|++++|..++++++...|+++.+...+
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-18 Score=170.41 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=155.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
.++.+|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.. ..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999 778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
++...++++.|...+.+++.++|.+..++..+|.++...|+ +++|+..|+++++.+|.++.++..+|.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999 999999999999999999988888888777777777
Q ss_pred HHHHHHHHHHhh
Q 001392 286 LVEQLTETALAV 297 (1088)
Q Consensus 286 ~A~~~~~~~l~~ 297 (1088)
+|+..|++++..
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777777754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=181.90 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-HCCCChhHHHhhhhhhhcc
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNL-------QLSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~l~~al~-~~p~~~~~~~~l~~~~~~~ 606 (1088)
..|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999864 5886 899999999999 7999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~ 686 (1088)
|++++|...|++++...|.....++..+|.+ +... |++++|..+|+++++.+|.+..++.+.+.+..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999998876333478888888 7777 99999999999999999998888877776654
Q ss_pred h-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhh
Q 001392 687 E-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEA 763 (1088)
Q Consensus 687 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--~~~~~l~~La~~~~~~ 763 (1088)
. .|++++|+.+|+++++..| +++.+|.++|.++..+|++++|+.+|++++...+.+ ....++..++..+...
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 3 7999999999999999998 789999999999999999999999999999963223 3588999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCChhHH
Q 001392 764 EQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 764 g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
|+++.|..+++++++..|+++...
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CCHHHHHHHHHHHHHHcccccccc
Confidence 999999999999999999876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=199.35 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=162.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
+.+++|+..+..+....|.++.+++.+|.++...|+| ++|+..|++++..+|.+ ..+++.+|.+|+..|++++|+..|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888999998888999999999999999999999 99999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhh---------chHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 221 QRALQLDPENVEALVALAVMDLQA---------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~---------~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
+++++++|+ ..++..+|.++... |+ +++|+..|++++.++|.++.+++.+|.+|...
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------- 226 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH---VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL---------- 226 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------
Confidence 999999998 79999999999998 77 99999999999999999887666666555332
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 001392 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1088)
++..+. ..|++++|+..|.+++.. .| ....+++.+|.+|...|++++|+.+|+++
T Consensus 227 ----------------~~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 227 ----------------YFNTGQ---NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ----------------HHHTTC---CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHhhcc---ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000000 013455555555555542 23 44445555555555555555555555555
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1088)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (1088)
+..+|++..++..++.++...|++++|+..+
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=188.44 Aligned_cols=167 Identities=13% Similarity=0.068 Sum_probs=74.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC---CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC----CchhhHh
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH----EFIFPYY 346 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~ 346 (1088)
+|.+++..|++++|+..+.+++..... .+..+.+++.+|.+|...|++++|+.+|.+++...+..+ ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455555555555555555555543221 112334455555555555555555555555554322211 1223344
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CCCHHHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK-----ID-PRDAQAFI 414 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~k~l~-----~~-p~~~~~~~ 414 (1088)
.+|.++...|++++|+.+|.+++...+.. ..++..+|.+|...|++++|+.+|.+++. .+ |..+.++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 44555555555555555555544432211 12444444444444444444444444444 22 33344444
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001392 415 DLGELL-ISSDTGAALDAFKTARTLLK 440 (1088)
Q Consensus 415 ~la~l~-~~~~~~~A~~~~~~a~~~~~ 440 (1088)
.+|.++ ..|++++|+.++++++.+.+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444444 44444444444444444433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=191.56 Aligned_cols=247 Identities=14% Similarity=0.102 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC-------c
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------N 375 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~ 375 (1088)
..++.+|..+...|++++|+.+|.+++..... .+....+++.+|.++...|+++.|+.++.+++...+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666999999999999999999999975332 3335678999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC-CCC
Q 001392 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVP 447 (1088)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 447 (1088)
..++..+|.+|...|++++|+.+|.+++.+.|.. ..++..+|.++ ..|++++|+.+|++++.+.+..+. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 4689999999999999999999999999875433 35899999999 999999999999999999887655 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
+.++.++|.++...|++++|+.+|++++...+.. .++.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~~~ 305 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------------GDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------------------------------CCHHHHHH
Confidence 7899999999999999999999999999853210 12233344
Q ss_pred HHhHHHHHHhcCC---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 001392 528 LFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1088)
Q Consensus 528 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 591 (1088)
+..++.++...|+ +.+|+.++++. ...|....++..+|.++...|++++|..++++++.+...
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6779999999999 77787777765 334455678889999999999999999999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-17 Score=170.65 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=128.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+.++..++.+|.+++..|++++|+..|.+++..+| .+..+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL-ANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch-HHHHHHH
Confidence 55678899999999999999999999999999998 888888889999999999999999999999999987 7788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENV-------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--CAMALNYL 274 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~--~~~~~~~l 274 (1088)
|.++..+|++++|+..|++++.++|+++ .++..+|.++...|+ +++|+..|.++++.+|. ++.++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 9999999999999999999999999988 557777777777777 77788888877777777 66666666
Q ss_pred HHHHHhc
Q 001392 275 ANHFFFT 281 (1088)
Q Consensus 275 a~~~~~~ 281 (1088)
|.+|+..
T Consensus 160 ~~~~~~~ 166 (228)
T 4i17_A 160 GVLFYNN 166 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-15 Score=175.14 Aligned_cols=476 Identities=10% Similarity=0.030 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ---HFLVEQL 290 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~ 290 (1088)
.+-+..|++.+..+|.+...|..++......+. +..+...|++++...|.....|...+......|. +..+..+
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~---~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQ---WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445667788888888888888888887777766 7788888888888888888888777777777776 7777777
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 001392 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDY----EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1088)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1088)
|++++.....+ .....|..........++. +.+. +.....|+
T Consensus 126 feRal~~~~~~-~sv~LW~~Yl~f~~~~~~~~~~~~~~r---------------------------------~~vr~~FE 171 (679)
T 4e6h_A 126 LARCLSKELGN-NDLSLWLSYITYVRKKNDIITGGEEAR---------------------------------NIVIQAFQ 171 (679)
T ss_dssp HHHHTCSSSCC-CCHHHHHHHHHHHHHHSCSTTTHHHHH---------------------------------HHHHHHHH
T ss_pred HHHHHHhcCCC-CCHHHHHHHHHHHHHhcccccccchhH---------------------------------HHHHHHHH
Confidence 77777543211 3344554444333333322 1111 11223444
Q ss_pred HHHHh----CCCcHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHH-hcCCHHHHHH
Q 001392 367 KVLEI----YPDNCETLKALGHIYV---------QLGQIEKAQELLRKAAKIDPRD-A-QAFIDLGELL-ISSDTGAALD 430 (1088)
Q Consensus 367 ~~l~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~k~l~~~p~~-~-~~~~~la~l~-~~~~~~~A~~ 430 (1088)
.++.. ++.+..+|........ ..++.+.+..+|.+++.+ |.. . ..|......- ..+.. .+..
T Consensus 172 rAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~ 249 (679)
T 4e6h_A 172 VVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARR 249 (679)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHH
T ss_pred HHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHH
Confidence 44432 3333444444333322 233466777788887753 432 2 1221111111 00000 0000
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh-cccccchhhhhhhhhHHHhhhhhhhh
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL-LDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
.+ . -...+|..|...+...-.......- ....... .+
T Consensus 250 ~~----------------------~---e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~----------------~~- 287 (679)
T 4e6h_A 250 HI----------------------G---ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ----------------AT- 287 (679)
T ss_dssp HH----------------------H---HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT----------------CC-
T ss_pred HH----------------------H---HhhHHHHHHHHHHHHHHHHHHhHhhcccccccc----------------ch-
Confidence 00 0 0112333444444332211000000 0000000 00
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcC-------CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHH-HH
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIH-------DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-EL 581 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~ 581 (1088)
.................|......-...+ .......+|++++...|.++..|+..+..+...|+.++|. .+
T Consensus 288 -~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 -ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp -TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred -hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 00000000000012234444443332221 1234567899999999999999999999999999999997 99
Q ss_pred HHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC-----------CCC----------ChHHHHHhhhHHHH
Q 001392 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----------DGK----------DSYATLSLGNWNYF 640 (1088)
Q Consensus 582 l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~~~----------d~~a~~~lg~~~y~ 640 (1088)
|.+++...|.+..+|..++.+....|+++.|..+|++++... |.. ....|+..+.+ ..
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-er 445 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MK 445 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HH
Confidence 999999999999999999999999999999999999998752 221 11233333322 22
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHHHHHHhc-CCCCHHHHhhHHHHHHhcC-CchHHHHHHHHHHHHhcCCCCCCchhHHH
Q 001392 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSNLYAANGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWI 718 (1088)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~l~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 718 (1088)
.. +..+.|..+|.++++. .+.....+...|.+....+ +++.|..+|+.+++..| +++..|.
T Consensus 446 R~------------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~ 508 (679)
T 4e6h_A 446 RI------------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYIN 508 (679)
T ss_dssp HH------------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHH
T ss_pred Hc------------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHH
Confidence 22 7789999999999998 4444555666666666655 59999999999999998 7788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhH
Q 001392 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 719 ~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
.++......|+...|..+|++++...+.+.. ..++......-...|....+.++++++.+..|+++.+...
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999999999999998543223 5667777777778899999999999999999998654433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=172.04 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001392 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM-HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1088)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1088)
..+..+|.+|+..|+.. +|+..|++++..+| .++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 8 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYA-----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHccCHH-----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 56778899998888766 99999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEA 233 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a 233 (1088)
.++..+|.++...|++++|+..|++++...|++ + .+++.+|.++..+|++++|+..|+++++++|+ ++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999998 4 56899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 001392 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313 (1088)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~ 313 (1088)
+..+|.++...|. ..+.++..+.+..+..+ .+......+.+++|+..+++++... |....+...++.
T Consensus 156 ~~~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGA--------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHH
Confidence 9999999988765 23344444444443222 2333344555666666666666554 444455555554
Q ss_pred HH
Q 001392 314 SY 315 (1088)
Q Consensus 314 ~~ 315 (1088)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-17 Score=175.65 Aligned_cols=218 Identities=20% Similarity=0.239 Sum_probs=154.9
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-
Q 001392 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP- 196 (1088)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~- 196 (1088)
...+|.++..++.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.+++..|+|++|+..|++++...|+++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578888889999999999999999999999999988888 88889999999999999999999999999888652
Q ss_pred -hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 197 -GAIRLGIGLCRYK--------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 197 -~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
+.+++.+|.|+.. +|++++|+..|++++..+|++..+...+..+....+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------------- 146 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------------- 146 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH---------------------
Confidence 4567888888888 8888888888888888888776554433332221111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
....++.+|.+|...|++++|+..|.+++...+..+....+++.
T Consensus 147 ------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 147 ------------------------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 01235556666666666666666666666654444445566666
Q ss_pred HHHHHHHc----------CCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCHHHH
Q 001392 348 LGQVQLKL----------GDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKA 395 (1088)
Q Consensus 348 la~~~~~~----------g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A 395 (1088)
+|.+|... |++++|+.+|++++..+|+++ .+...++.++...++++.+
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 77766655 777777777777777777763 4555666666666655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=198.55 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=162.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
..|+++.++..+|.+|..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++|+..|+++++++|+++.++..++.++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 001392 283 QHFLVEQLTETALAV 297 (1088)
Q Consensus 283 ~~~~A~~~~~~~l~~ 297 (1088)
++++|...+++++..
T Consensus 160 ~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 160 DWTDYDERMKKLVSI 174 (723)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 998888888887753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=185.06 Aligned_cols=403 Identities=14% Similarity=0.120 Sum_probs=195.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHH
Q 001392 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~ 219 (1088)
..|++++|..+++++ +++.+|..+|.++...|++++|+..|.++ .+ +..+..++.++...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D-~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD-PSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 445555555555555 22345555555555555565555555442 12 22445555555556666666665
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001392 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1088)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 299 (1088)
++.+.+..+ ++.+...++.+|.+.|+ +.++..++. .| +..++..+|..++..|.|+.|..+|..+
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~---l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNR---LAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------C---HHHHTTTTT-----CC-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCC---HHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 555555322 24445555555555555 555444443 13 2346777777777777777777777754
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001392 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1088)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1088)
..|..+|.++..+|+|+.|+..|.++ ..+.+|..++.++...|+++.|..+...+. .+| .-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a---d~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA---DEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH---HHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH---hhH
Confidence 46788889999999999999999887 246678888889999999999977776533 444 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001392 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456 (1088)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 456 (1088)
..++.+|.+.|.+++|+.++++++.+++.+...+..|+.+| .-++..+.++.|...+.+-+-...-..+.+|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999998 334555555555554444331000012567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHH
Q 001392 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1088)
Q Consensus 457 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1088)
+|...++++.|+...-...... | +. ..|..+. ..+.++.+++.....|.
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a-~----------------------~~-~~f~~~~-------~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDA-W----------------------KE-GQFKDII-------TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTT-C----------------------CH-HHHHHHH-------HHCSSTHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhh-h----------------------hh-HHHHHHH-------hchhHHHHHHHHHHHHH
Confidence 9999999999988665443210 0 00 0011100 23557788888887777
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHH
Q 001392 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 616 (1088)
+....++..+..++...-+. .+...++.+.|+..-...++..+.. -++..+--.+-.+|....+++ .+
T Consensus 340 --~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~----~l 407 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQ----AL 407 (449)
T ss_dssp --HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHH----HH
T ss_pred --hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHH----HH
Confidence 44455566666666321121 3445566788888888888866653 345566667788888888884 45
Q ss_pred HHhhhcCCCCChH
Q 001392 617 RAASDATDGKDSY 629 (1088)
Q Consensus 617 ~~al~~~~~~d~~ 629 (1088)
+..+...+.-|..
T Consensus 408 r~si~~~~nfd~~ 420 (449)
T 1b89_A 408 RTSIDAYDNFDNI 420 (449)
T ss_dssp HHHHHHCCCSCHH
T ss_pred HHHHHHhcCcCHH
Confidence 5555555544443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=198.37 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001392 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1088)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 158 (1088)
.|+...+++.||.+|..+|+.+ +|+.+|+++++++|+++.+|+.+|.+|...|++++|+..|+++++.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~-----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIE-----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567889999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..+|
T Consensus 74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 9999999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
.++...|+ +.+|+..+++++++.|+
T Consensus 153 ~~l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 153 HCLQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred hHHHhccc---HHHHHHHHHHHHHhChh
Confidence 99999999 99999999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=170.42 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=173.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 001392 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN-- 230 (1088)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 230 (1088)
....|.++..++.+|..++..|+|++|+..|++++...|.++ +.+++.+|.|++.+|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345788999999999999999999999999999999999873 5678999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHh--------hchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 001392 231 -VEALVALAVMDLQ--------ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (1088)
Q Consensus 231 -~~a~~~la~~~~~--------~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 301 (1088)
+.+++.+|.++.. .|+ +.+|+..|++++..+|+++.+...+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~a~~-------------------------- 138 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD---TRKAIEAFQLFIDRYPNHELVDDATQ-------------------------- 138 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH---HHHHHHHHHHHHHHCTTCTTHHHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHHHHCcCchhHHHHHH--------------------------
Confidence 6788999999998 777 99999999999999988763321111
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Q 001392 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCET 378 (1088)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 378 (1088)
.+. .+. ......++.+|.+|...|++++|+..|++++..+|+ .+.+
T Consensus 139 -----------~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 139 -----------KIR--------------ELR------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp -----------HHH--------------HHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred -----------HHH--------------HHH------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 000 000 011233788999999999999999999999999998 5679
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-hcCCHHH
Q 001392 379 LKALGHIYVQL----------GQIEKAQELLRKAAKIDPRDA---QAFIDLGELL-ISSDTGA 427 (1088)
Q Consensus 379 ~~~la~~~~~~----------g~~~~A~~~~~k~l~~~p~~~---~~~~~la~l~-~~~~~~~ 427 (1088)
++.+|.+|... |++++|+..|++++...|+++ .+...++.++ ..++++.
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999977 899999999999999999995 4555566666 5555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=184.80 Aligned_cols=248 Identities=16% Similarity=0.123 Sum_probs=195.6
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC--
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 589 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-- 589 (1088)
..|....+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++.+++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999984 56678899999999999999999999999999883
Q ss_pred ------CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC-----C--CCChHHHHHhhhHHHHHHhhhhhcChhHHHHH
Q 001392 590 ------GKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEATH 656 (1088)
Q Consensus 590 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~--~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~ 656 (1088)
|....++..+|.++...|++++|+..|.+++... + .....++..+|.+ |... |+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------~~ 168 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL-CQNQ------------GK 168 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------TC
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHc------------CC
Confidence 5556789999999999999999999999999863 2 1234567788888 8888 99
Q ss_pred HHHHHHHHHHHHhc--------CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcC----CCCCCchhHHH------
Q 001392 657 LEKAKELYTRVIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWI------ 718 (1088)
Q Consensus 657 ~~~A~~~~~~al~~--------~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~------ 718 (1088)
+++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++...|. ...+.....+.
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 99999999999998 7778889999999999999999999999999987542 11112233333
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 719 ~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
.++..+...+.+.+|+..+..++.. .+..+.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3444455556677777788887765 4455889999999999999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=179.33 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=197.1
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhC---C---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-------DA 410 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~-------~~ 410 (1088)
.++.+|..+...|++++|+.+|.+++... + ....++..+|.+|...|+++.|+.++.+++.+.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 46778999999999999999999998763 2 24578999999999999999999999999987432 25
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001392 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (1088)
Q Consensus 411 ~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 488 (1088)
.++..+|.++ ..|++++|+.+|.+++.+.+..+... ...+++++|.+|...|++++|+.+|.+++......
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------- 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------- 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------
Confidence 6788999999 99999999999999999887654322 25688999999999999999999999998732100
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH-----cCCcHHHHH
Q 001392 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYL 563 (1088)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 563 (1088)
..|..+.+++++|.++...|++++|+.++++++.. +|.....+.
T Consensus 256 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 256 -------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp -------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred -------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23455789999999999999999999999999997 445566777
Q ss_pred HHHHHHHHcCC---hHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 564 RLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 564 ~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|...|++++..
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888888 77888877762 222344557788999999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=178.99 Aligned_cols=239 Identities=12% Similarity=0.029 Sum_probs=200.3
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-------
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------- 592 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------- 592 (1088)
..++.+|..+...|++++|+..|.+++...+ ..+.++..+|.++...|++..|+.++.+++.+.+..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 4677889999999999999999999997532 347799999999999999999999999999986542
Q ss_pred hhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC-----CChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
..++..+|.+|...|++++|+..|.+++...+. ....++..+|.+ |... |++++|+.+|.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~~a 248 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS-YDRS------------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHH
Confidence 336789999999999999999999999985321 123467789999 9888 9999999999999
Q ss_pred Hh-----cCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccC---HHHHHHHHHH
Q 001392 668 IV-----QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQN 739 (1088)
Q Consensus 668 l~-----~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~Ai~~~~~ 739 (1088)
+. .+|..+.++..+|.++...|++++|+.+|++++...+....+.....+..++.++...|+ +.+|+..+++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99 888889999999999999999999999999999997654334455567788888888888 7777777765
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001392 740 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1088)
Q Consensus 740 al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~ 780 (1088)
.-. .+....++..+|.+|...|++++|..+|+++++..
T Consensus 329 ~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 329 KNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 211 11225677899999999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=179.06 Aligned_cols=252 Identities=19% Similarity=0.122 Sum_probs=170.4
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Q 001392 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----- 405 (1088)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~----- 405 (1088)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|.+++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 444455555666666666666666666665553 3444566666777777777777777777776655
Q ss_pred ---CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001392 406 ---DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA--GE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1088)
Q Consensus 406 ---~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~ 478 (1088)
.|....++..+|.++ ..|++++|+.+|.+++...... +. +....++..+|.++...|++++|+.+|++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 244466777777777 7777777777777777765432 11 1125778899999999999999999999998741
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC-
Q 001392 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD- 557 (1088)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~- 557 (1088)
... .....|....+++.+|.++...|++++|+.+|++++...|.
T Consensus 184 ~~~-----------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 184 QTK-----------------------------------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp HHT-----------------------------------SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------------------------------hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 100 00024567789999999999999999999999999976433
Q ss_pred --------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcC
Q 001392 558 --------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1088)
Q Consensus 558 --------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 623 (1088)
....+..++..+...+.+.+|..++..+....|..+.++..+|.+|...|++++|...|++++.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 233444455556667788888999999999999999999999999999999999999999998875
Q ss_pred CC
Q 001392 624 DG 625 (1088)
Q Consensus 624 ~~ 625 (1088)
+.
T Consensus 309 ~~ 310 (311)
T 3nf1_A 309 KQ 310 (311)
T ss_dssp C-
T ss_pred hc
Confidence 53
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-15 Score=160.78 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=182.8
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVE----FNR---GRYSDSL 182 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~----~~~---g~~~~Al 182 (1088)
+|+.++.+++.++|.+..+|..++.++...| .+++++.++..++..+|.+..+|..++.++ ... +++.+++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 999999999999999999999999999999 777 8999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch---HHhHHHHHHHH
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG--KARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM 257 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~---~~~~~~Al~~~ 257 (1088)
.++.+++..+|.+ ..+|...+.++..+|.++ +++.++.++++.+|.|..+|...+.+....+. ...+.+++.++
T Consensus 131 ~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 131 DILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 9999999999999 788999999999999999 99999999999999999999999999887754 23488999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 258 QRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+++..+|.+..+|+.++.++...|.... +..++.+++......+..+.++..++.++...|+.++|+.+|..+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999888888777433 4445555443221223344455555555554455555555544444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-18 Score=187.21 Aligned_cols=329 Identities=12% Similarity=0.082 Sum_probs=156.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001392 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1088)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~ 429 (1088)
+....|++++|..+++++ +.+.+|..+|.++...|++++|+..|.++ .++..+..++..+ ..|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 344667788888888887 33468888888888888888888888763 4566778888888 888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001392 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
.+++.+++..+. +.+...++.+|.+.|++.++..+++
T Consensus 82 ~yl~~ark~~~~------~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------------- 118 (449)
T 1b89_A 82 KYLQMARKKARE------SYVETELIFALAKTNRLAELEEFIN------------------------------------- 118 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------------------------------------
T ss_pred HHHHHHHHhCcc------chhHHHHHHHHHHhCCHHHHHHHHc-------------------------------------
Confidence 888877764222 4667778888888888888765552
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
.| +...+..+|..+...|++++|..+|..+ ..|..++.++..+|++++|++.+.++
T Consensus 119 -----------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA---- 174 (449)
T 1b89_A 119 -----------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA---- 174 (449)
T ss_dssp -----------CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----
T ss_pred -----------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----
Confidence 12 3348888999999999999999999875 46888999999999999999999888
Q ss_pred CCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHh
Q 001392 590 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1088)
Q Consensus 590 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 669 (1088)
.++.+|..++.++...|+|..|..+...++ ..|. -+..+.++ |... |++++|+.++++++.
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad----~l~~lv~~-Yek~------------G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHAD----ELEELINY-YQDR------------GYFEELITMLEAALG 235 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHH----HHHHHHHH-HHHT------------TCHHHHHHHHHHHTT
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHh----hHHHHHHH-HHHC------------CCHHHHHHHHHHHhC
Confidence 468888888889999999999977666533 3332 23356677 7777 899999999999999
Q ss_pred cCCCCHHHHhhHHHHHHhc--CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH----
Q 001392 670 QHTSNLYAANGAGVVLAEK--GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---- 743 (1088)
Q Consensus 670 ~~p~~~~a~~~la~~l~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~---- 743 (1088)
+++....++..+|.+|++- +++.++++.|...+...|--.....+..|..+..+|...++|+.|+...-.....
T Consensus 236 le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~ 315 (449)
T 1b89_A 236 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 315 (449)
T ss_dssp STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh
Confidence 9998999999999988864 5777777777654443320000035778899999999999999998753222100
Q ss_pred ------hcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001392 744 ------FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1088)
Q Consensus 744 ------~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al 777 (1088)
-....++.+++.....|. +....++..+..++
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 002455777777666666 55666777777777
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-15 Score=168.30 Aligned_cols=279 Identities=14% Similarity=0.062 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----hH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GA 198 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~ 198 (1088)
.+++.+|.+++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...|... ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456678888888888888888888888776542 2567778888888888888888888887655431 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
++..+|.++...|++++|+..|++++.+. |....++..+|.++...|+ +++|...+.+++...|...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-- 169 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ-- 169 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccC--
Confidence 35667888888888888888888887764 2233445566666666666 6667777766666654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch--hhH--h
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FPY--Y 346 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~--~ 346 (1088)
.+....++..+|.++...|++++|..++.+++.......... ... .
T Consensus 170 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 170 ------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp ------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 011223445555555555555555555555554322111110 111 1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 001392 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAFIDL 416 (1088)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~------~~~~~~~l 416 (1088)
.++.++...|++++|..++.+++...|.. ...+..++.++...|++++|...+.+++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23344555566666666666555544321 224455666666666666666666666554321 12355566
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHHHHhc
Q 001392 417 GELL-ISSDTGAALDAFKTARTLLKKA 442 (1088)
Q Consensus 417 a~l~-~~~~~~~A~~~~~~a~~~~~~~ 442 (1088)
+.++ ..|++++|...+.+++...+..
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence 6666 6677777777777777666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=160.87 Aligned_cols=243 Identities=10% Similarity=-0.029 Sum_probs=196.7
Q ss_pred HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChhHHHHHHHHHH----HHc-
Q 001392 139 LAKGEV-EQASSAFKIVLEADRDNVPALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR----YKL- 210 (1088)
Q Consensus 139 ~~~g~~-~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~----~~~- 210 (1088)
...|.+ ++|+.++..++..+|.+..+|..++.++...| .+++++.++..++..+|.+ ..+|...+.++ ..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhcc
Confidence 344444 68999999999999999999999999999999 9999999999999999999 67788888888 777
Q ss_pred --CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 211 --GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 211 --g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~--~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+++++++.++.+++..+|.+..+|...+.+....+. +. +++..+.+++..+|.+..+|.+.+.++...+...
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~---~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~- 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL---HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA- 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-
Confidence 789999999999999999999999999999988887 77 8999999999999999988887777665544300
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH-HHHHH
Q 001392 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNF 365 (1088)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 365 (1088)
....+++++.++.+++. ..|.+..+|+.++.++...|+... ...++
T Consensus 198 ------------------------------~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 198 ------------------------------TDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ------------------------------hhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 00115677777777776 567777777777777777776444 44466
Q ss_pred HHHHHhC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 001392 366 EKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGEL 419 (1088)
Q Consensus 366 ~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~-~~p~~~~~~~~la~l 419 (1088)
.+++... |.++.++..++.+|.+.|+.++|+.+|+.+.. .+|.....|...+..
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 6666554 77888888888888888888888888888886 688888887766553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-15 Score=167.10 Aligned_cols=290 Identities=15% Similarity=0.073 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
.++..+|.+++..|++++|+..+++++...|.... .++..+|.++...|+++.|...+.+++.+.|.....+.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 91 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--- 91 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH---
Confidence 45677788888889999999999998888776532 24667788888888888888888888876543211100
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---C--CCCchHHHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---H--GPTKSHSYYNLAR 313 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~--~~~~~~~~~~la~ 313 (1088)
...++..++.++...|++..|+..+..++.... . .+....++..+|.
T Consensus 92 ----------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 143 (373)
T 1hz4_A 92 ----------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143 (373)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 011233344444444445554444444443221 1 1344567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC--CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-HHHH----HHHHH
Q 001392 314 SYHSKGDYEKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--N-CETL----KALGH 384 (1088)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-~~~~----~~la~ 384 (1088)
++...|++++|..++.+++...+. ++....++..+|.++...|++++|..++++++...+. . .... ..++.
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 999999999999999999875542 2235567889999999999999999999999876322 2 2211 13456
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 001392 385 IYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIH 458 (1088)
Q Consensus 385 ~~~~~g~~~~A~~~~~k~l~~~p~~----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~ 458 (1088)
++...|++++|..++.+++...|.. ...+..++.++ ..|++++|...+++++...+..+.... ..++..+|.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 6889999999999999998876643 34567889999 999999999999999998876543222 35889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhh
Q 001392 459 FEKGEFESAHQSFKDALGDGIWLTL 483 (1088)
Q Consensus 459 ~~~g~~~~A~~~l~~al~~~~~~~~ 483 (1088)
...|++++|...|.+++........
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999987654443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=155.39 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.+++++|+..|.+++..+|.++..++.+|.+|+..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 56677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA-FQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
+++.++|++ +.+++.+|.++..+|++++|... ++++++++|+++.++..++.++...|+
T Consensus 90 ~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999998 77899999999999999877665 589999999999999888888877664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-17 Score=156.37 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=133.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
+|.++...|++++|+..|..++..+|.++.+++.+|.+|+..|+|++|+..|++++.++|++ +.+++.+|.++..+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCch
Confidence 67888889999999999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
++|+..|+++++++|+++.+++.+|.++...|+ +.+|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 8777765 589999999999999988888877774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=166.55 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=176.1
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--G-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~--g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1088)
+|..++.++-+.-+.....+ .++.. + ++++|+.+|.++ |.++...|+|++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655433222 22332 2 499999999887 56788899999999999999
Q ss_pred HHhCCC-----ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhh-chHHhHHHHHHH
Q 001392 189 LQVHPS-----CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQA-NEAAGIRKGMEK 256 (1088)
Q Consensus 189 l~~~p~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-~~~~~~~~Al~~ 256 (1088)
+.+.+. ....++..+|.+|..+|++++|+..|++++.+.|.. ..++..+|.++... |+ +++|+.+
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~---~~~A~~~ 140 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDC 140 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC---HHHHHHH
Confidence 987532 225678899999999999999999999999886642 34566666666664 66 6777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1088)
|++++.+.|... .......++..+|.++...|++++|+.+|.+++...+
T Consensus 141 ~~~Al~~~~~~~-------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 141 YELAGEWYAQDQ-------------------------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHTT-------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-------------------------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 777666654221 0011135677888888888999999999988887443
Q ss_pred CCCCc----hhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--hcCCHHHHHHHHHHHHHh
Q 001392 337 KPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYV--QLGQIEKAQELLRKAAKI 405 (1088)
Q Consensus 337 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~k~l~~ 405 (1088)
..+.. ..+++.+|.++...|++++|+.+|++++.++|.... .+..++..+. ..+++.+|+..|.+++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 32221 125678889999999999999999999888887654 3444555554 456799999999888888
Q ss_pred CCCCHHHHHHHHHHH
Q 001392 406 DPRDAQAFIDLGELL 420 (1088)
Q Consensus 406 ~p~~~~~~~~la~l~ 420 (1088)
+|.....+..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887666655554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=149.86 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001392 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1088)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1088)
...++..+|.+|...|... +|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++...|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4456667777777766655 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
+.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++...|.++.++..+|.++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 8888888888888888888888888888888887 667888888888888888888888888888888888888888888
Q ss_pred HhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
...|+ +++|+..+.+++..+|.+.
T Consensus 155 ~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred HHcCC---HHHHHHHHHHHHHcCCCch
Confidence 88888 8888888888888777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=155.66 Aligned_cols=166 Identities=17% Similarity=0.105 Sum_probs=116.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------------QACVEFNRGRYSDSLEFYKRALQ 190 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------la~~~~~~g~~~~Al~~~~~al~ 190 (1088)
++..++..|..++..|++++|+..|.+++..+|+++.+++. +|.++...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999988 78888888888888888888888
Q ss_pred hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 191 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
.+|++ +.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++...+. .....+...+.+++...| ...+
T Consensus 83 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 83 KAPNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCH-HHHH
T ss_pred HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCc-hhHH
Confidence 88877 66777788888888888888888888888888888888888877766553 113445555555442221 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 271 LNYLANHFFFTGQHFLVEQLTETAL 295 (1088)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l 295 (1088)
++.+|..+...|++++|+..|++++
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333444444444444444444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=187.11 Aligned_cols=191 Identities=12% Similarity=-0.005 Sum_probs=169.4
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL--------EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+|.++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.+++..|++++|+..|++++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56888888888777 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1088)
++ ..+++.+|.++..+|++++|+..|+++++++|++..+++.+|.++...|+ +++ +..|+++++++|.++.+++.
T Consensus 465 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCchHHHHHH
Confidence 99 78899999999999999999999999999999999999999999999999 999 99999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
+|.++...|++++|+..|++++.. .|....+++.+|.++...+..++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT---SRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT---STTHHHHHHHHHHHTC-------
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc---CcccHHHHHHHHHHHHccCCCCC
Confidence 999999999999999998888754 46777888888888877665333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=154.44 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=136.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRL 201 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~ 201 (1088)
.+..++.+|..++..|+|++|+..|++++...|.++ .+++.+|.+++..|+|++|+..|++++..+|+++. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456788899999999999999999999999888764 68899999999999999999999999999998732 3678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1088)
.+|.++..+|.. ....+..++.++...|+ +++|+..|++++..+|+++.+...+..+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHH---HHHHHHHHHHHHTTCTTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHH---HHHHHHHHHHHHHHCcCChhHHHHHHHH----
Confidence 888888776532 11223445555556666 8888888888888888876544222111
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHH
Q 001392 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1088)
+.+.. . .....+.+|.+|...|++.+|
T Consensus 140 ------------------------------~~~~~--------------~---------~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 140 ------------------------------VFLKD--------------R---------LAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp ------------------------------HHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------------------HHHHH--------------H---------HHHHHHHHHHHHHHcCcHHHH
Confidence 10000 0 001123456666666666666
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 001392 362 LTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1088)
Q Consensus 362 ~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~ 409 (1088)
+..|+++++.+|+++ .++..+|.+|..+|++++|+..++++....|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 666666666666654 456666666666666666666666666665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=163.54 Aligned_cols=233 Identities=17% Similarity=0.102 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (1088)
++++|+..|.++ +.++ ..|++++|+..|.+++.+.+..+.... +.++.++|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366666666665 3455 677888888888888777665443222 578889999999999999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhc-CCHHHHHHH
Q 001392 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (1088)
Q Consensus 469 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (1088)
.+|++++...+... .......++.++|.+|... |++++|+.+
T Consensus 98 ~~~~~Al~l~~~~g-------------------------------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 98 DSLENAIQIFTHRG-------------------------------------QFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------------------------------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99999988532100 1112356889999999996 999999999
Q ss_pred HHHHHHHcCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh-------HHHhhhhhhhcccchHHHHH
Q 001392 548 YRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAKE 614 (1088)
Q Consensus 548 ~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~ 614 (1088)
|++++...|.. ..++..+|.++...|++++|+.+|++++.+.|.+.. ++..+|.++...|++.+|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988753 568999999999999999999999999999988764 56889999999999999999
Q ss_pred HHHHhhhcCCCCChH----HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Q 001392 615 TFRAASDATDGKDSY----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 685 (1088)
Q Consensus 615 ~~~~al~~~~~~d~~----a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l 685 (1088)
.|++++.+.|..... .+..++.. |... . .+++.+|+..|++++.++|.+...+..+-..+
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~-~~~~--~--------~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDA-VNEG--D--------SEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHH-HHTT--C--------TTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHH-HHcC--C--------HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999988763221 22233333 3211 0 16799999999999999998766666554444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-15 Score=147.47 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=145.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...++.+|.+++..|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999988 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
...|++++|...|.+++..+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999998888 89999999999998888887777777777777777777
Q ss_pred HHHHHHHHhhc
Q 001392 288 EQLTETALAVT 298 (1088)
Q Consensus 288 ~~~~~~~l~~~ 298 (1088)
...+..++...
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 77777766544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=141.28 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=112.0
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
++..++|..+..+..+|..++..|+|++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++.++|++ ..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999999999999888765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=154.38 Aligned_cols=210 Identities=11% Similarity=0.114 Sum_probs=165.1
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh---HHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 597 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~ 597 (1088)
.+..++.+|..+...|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45788999999999999999999999999998875 478999999999999999999999999999999876 788
Q ss_pred hhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 001392 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 677 (1088)
.+|.++...+.. .+. .+..++.. +... |++++|+..|++++..+|+++.+
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~-~~~~------------~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRS-DRDP------------QQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CC------------HHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchh-hcCc------------HHHHHHHHHHHHHHHHCcCChhH
Confidence 889888776532 111 12234444 4444 99999999999999999998876
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~l~~L 756 (1088)
...+..+. .+.. ......+.+|.+|+..|++.+|+..|+++++.+|.++. +.+++.+
T Consensus 133 ~~a~~~l~--------------~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 TDATKRLV--------------FLKD--------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp HHHHHHHH--------------HHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHH--------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 64332211 1111 12345578899999999999999999999999765443 5789999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 757 a~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
|.+|...|++++|+..++++....|++..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999997654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=183.79 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHh--------hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 001392 107 EEHFILATQYYNKAS--------RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 178 (1088)
.+++++|+..|++++ ..+|.++.+++.+|.+++..|++++|+..|++++..+|++..+++.+|.+++..|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 456789999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
++|+..|++++.++|++ ..+++.+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+ +++|+..|+
T Consensus 484 ~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~ 558 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999 7789999999999999999 999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 259 RAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
++++++|.+..++..++.+++..+.
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999988666
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=149.17 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
+..+...|..++..|++++|+..|.+++... |.++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------p~~~~~ 40 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------------------------------------------IDRTEM 40 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------------CCChHH
Confidence 5677888999999999999999999999843 334444
Q ss_pred HHh----------------HHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Q 001392 528 LFN----------------LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1088)
Q Consensus 528 ~~~----------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 591 (1088)
++. +|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|++++.++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 41 YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 444 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhhhhhcccc--hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHh
Q 001392 592 YPNALSMLGDLELKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1088)
Q Consensus 592 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 669 (1088)
++.+++.+|.+|...|+ ...+...|.+++. +.+..++++.+|.+ +... |++++|+..|+++++
T Consensus 121 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~-~~~~------------~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS-KLFT------------TRYEKARNSLQKVIL 185 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH-HHHH------------HTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH-HHHc------------cCHHHHHHHHHHHHH
Confidence 99999999999987765 4566777777654 33345667777877 7777 999999999999999
Q ss_pred cCCCCHHHHhhHHH
Q 001392 670 QHTSNLYAANGAGV 683 (1088)
Q Consensus 670 ~~p~~~~a~~~la~ 683 (1088)
++|++ .+...+..
T Consensus 186 l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 186 RFPST-EAQKTLDK 198 (208)
T ss_dssp TSCCH-HHHHHHHH
T ss_pred hCCCH-HHHHHHHH
Confidence 99974 33333433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-13 Score=146.44 Aligned_cols=245 Identities=13% Similarity=0.049 Sum_probs=193.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YS 179 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~ 179 (1088)
+|+.++.+++.++|.+..+|..++.++...|. +++++.++..++..+|.+..+|..++.++...+. +.
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 79999999999999999999999999988776 7899999999999999999999999999999994 89
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-----------H
Q 001392 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------A 247 (1088)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------~ 247 (1088)
+++.++.+++..+|.+ ..+|...+.++...|. +++++.++.+++..+|.|..+|..++.+...... .
T Consensus 128 ~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 206 (331)
T 3dss_A 128 RELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 206 (331)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence 9999999999999999 7889999999999998 6999999999999999999999999988877621 1
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001392 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1088)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1088)
+.+.+++.++.+++..+|++..+|+++..++...- |
T Consensus 207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~------------------------------------~-------- 242 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGS------------------------------------G-------- 242 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSS------------------------------------C--------
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc------------------------------------C--------
Confidence 34899999999999999999988876655443220 0
Q ss_pred HHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 001392 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQIEKAQELLRKAAK 404 (1088)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~k~l~ 404 (1088)
.+.. + -...+.+++++.++.++++..|++...+..++.+.. ..+..++...++.++++
T Consensus 243 ----------~~~~-------~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 243 ----------RCEL-------S--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp ----------GGGC-------C--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ----------cccc-------c--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 0000 0 111233566666777777777766544444333322 24566777777777777
Q ss_pred hCCCCHHHHHHHHHHH
Q 001392 405 IDPRDAQAFIDLGELL 420 (1088)
Q Consensus 405 ~~p~~~~~~~~la~l~ 420 (1088)
++|.....|..+..-+
T Consensus 304 ~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 304 VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCGGGHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHH
Confidence 7777777776665544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=159.57 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Q 001392 107 EEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGR 177 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~ 177 (1088)
...|.+|+..+.++...+ |..+.++..+|.+++..|++++|+.+|.+++.. .|..+.++..+|.++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 455667777777766544 667889999999999999999999999999977 35567789999999999999
Q ss_pred hHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH
Q 001392 178 YSDSLEFYKRALQVH--------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------DPENVEALVALAVMD 241 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~--------p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~ 241 (1088)
+++|+.+|.+++... |.. ..++..+|.++..+|++++|+..|++++.+ .|....++..+|.++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999872 333 667889999999999999999999999988 666677888899999
Q ss_pred HhhchHHhHHHHHHHHHHHHHh
Q 001392 242 LQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
...|+ +++|+..|.+++..
T Consensus 180 ~~~g~---~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 180 LKQGK---YQDAETLYKEILTR 198 (283)
T ss_dssp HHHTC---HHHHHHHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHH
Confidence 88888 88899999888876
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-13 Score=146.10 Aligned_cols=250 Identities=12% Similarity=0.031 Sum_probs=195.1
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 139 LAKGEVE-QASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 139 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
...|.+. +|+.++..++..+|.+..+|..++.++...+. +.+++.++..++..+|.+ ..+|...+.++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-y~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 3556654 89999999999999999999999999988776 789999999999999999 77899999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 001392 208 YKLGQ--LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1088)
Q Consensus 208 ~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1088)
..+|. +++++.++.++++.+|.|..+|...+.+....|. .+++++.++.+++..+|.+..+|+..+.++...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 99994 8999999999999999999999999999888775 1488999999999999999988888777654432210
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 001392 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1088)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1088)
.+ + .... ...+.+++++.++
T Consensus 197 ~~--------------~----------------------------------~~~~------------~~~~~~~eEle~~ 216 (331)
T 3dss_A 197 DS--------------G----------------------------------PQGR------------LPENVLLKELELV 216 (331)
T ss_dssp ------------------------------------------------------C------------CCHHHHHHHHHHH
T ss_pred cc--------------c----------------------------------cccc------------cchHHHHHHHHHH
Confidence 00 0 0000 0012356777888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----hcCCHHHHHH
Q 001392 366 EKVLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALD 430 (1088)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~----~~~~~~~A~~ 430 (1088)
.+++..+|++..+|+.+..++... +.+++++..+.+++++.|++...+..++.+. ..+..++...
T Consensus 217 ~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 217 QNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHH
Confidence 888888888888877665555544 4589999999999999999976666665543 3577889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001392 431 AFKTARTLLKKAGEEVPIEVLNNIGV 456 (1088)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~ 456 (1088)
++.+++++.|.. ..-|..++.
T Consensus 297 ~l~~l~~~Dp~r-----~~~y~d~~~ 317 (331)
T 3dss_A 297 YFSTLKAVDPMR-----AAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHCGGG-----HHHHHHHHH
T ss_pred HHHHHHHhCcch-----hhHHHHHHH
Confidence 999999987653 444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-13 Score=145.27 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=160.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNR-G-RYSDSLEFYKRA 188 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g-~~~~Al~~~~~a 188 (1088)
+|+.++++++.++|.+..+|..++.++...| .+++++.++..++..+|.+..+|..++.++... + ++.+++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7999999999999999999999999999999 599999999999999999999999999999998 8 999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch----HHhHHHHHHH
Q 001392 189 LQVHPSCPGAIRLGIGLCRYKLGQLG--------KARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEK 256 (1088)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----~~~~~~Al~~ 256 (1088)
+..+|.+ ..+|...+.++..+|.++ +++.++.++++.+|.|..+|...+.+....+. ...+.+++.+
T Consensus 152 L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 152 LLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp TSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999 788999999999998888 99999999999999999999999999888764 2347899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 257 MQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
+.+++..+|.+..+|+.+..++...|..
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998888777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=155.14 Aligned_cols=212 Identities=18% Similarity=0.214 Sum_probs=153.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----
Q 001392 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---- 335 (1088)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 335 (1088)
|..+.++..+|.+++..|++++|+.++.+++... ...+....++..+|.++...|++++|+.+|.+++...
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4445566666666666666666666666666543 3445666788888889999999999999988888643
Q ss_pred -CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Q 001392 336 -NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI- 405 (1088)
Q Consensus 336 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~- 405 (1088)
+..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|.+++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234667788899999999999999999999999988 6667788999999999999999999999999876
Q ss_pred --------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 406 --------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1088)
Q Consensus 406 --------~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~l~~a 474 (1088)
.+.....+..++..+ ..+.... ...+..+........... ...++..+|.++...|++++|+.+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRD-SAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666777777776 3333332 233444444433332221 2578899999999999999999999999
Q ss_pred Hhc
Q 001392 475 LGD 477 (1088)
Q Consensus 475 l~~ 477 (1088)
+..
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 873
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=135.69 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=114.5
Q ss_pred HHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 666 ~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
++..++|....++..+|..+...|++++|+..|+++++..| .++.+|+++|.+|..+|++.+|+..|+++++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 45568999999999999999999999999999999999998 78999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHH
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~ 794 (1088)
++.++.+++.+|.+|...|++++|+..|+++++++|+++.++.+++.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7788999999999999999999999999999999999999999998874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-15 Score=140.72 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.+-..|.+++.++|+++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|+|++|+..|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
+|++ +.+++.+|.||..+|++++|+..|++++.+.|+..
T Consensus 100 ~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999 77899999999999999999999999999999765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=144.38 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=132.3
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.....++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| + +.++..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHH
Confidence 4555677889999999999999999999999999999999999999999999999999999999999999 6 4444444
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 001392 204 GLCR-YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFF 280 (1088)
Q Consensus 204 g~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~ 280 (1088)
+.+. ...+....|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|.. +.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5442 233344457888888888888888888888888888888 888888888888888764 4467777777777
Q ss_pred cCCHHHHHHHHHHHHh
Q 001392 281 TGQHFLVEQLTETALA 296 (1088)
Q Consensus 281 ~g~~~~A~~~~~~~l~ 296 (1088)
.|++++|...|.+++.
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 7777777766666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=145.85 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=126.8
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhh
Q 001392 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1088)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg 635 (1088)
|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| +......++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 334455667777777777777777777777777777777777777777777777777777777777666 333333333
Q ss_pred hHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchh
Q 001392 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1088)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1088)
.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|+. ..+.
T Consensus 81 ~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 145 (176)
T 2r5s_A 81 KLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGE 145 (176)
T ss_dssp HHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTH
T ss_pred HHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHH
Confidence 3311111 223347888999999999999999999999999999999999999999888732 2356
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 716 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
++.++|.++..+|++++|+..|++++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 8999999999999999999999988764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-13 Score=144.52 Aligned_cols=249 Identities=11% Similarity=-0.058 Sum_probs=206.4
Q ss_pred CCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCChhHHHh
Q 001392 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 598 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~ 598 (1088)
..+....++..+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++..++..+|.+..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344455666666677777777889999999999999999999999999999999 5999999999999999999999999
Q ss_pred hhhhhhcc-c-chHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHH--------HHHHHHHHHH
Q 001392 599 LGDLELKN-D-DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--------KAKELYTRVI 668 (1088)
Q Consensus 599 l~~~~~~~-g-~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al 668 (1088)
.++++... + ++.+++..+.+++...|. +..++...+.+ +... +.++ ++++++.+++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv-l~~l------------~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL-YSHF------------STLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH-HHHH------------HHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------ccccccchhhHHHHHHHHHHHH
Confidence 99999988 7 899999999999999887 77788888777 6665 5555 9999999999
Q ss_pred hcCCCCHHHHhhHHHHHHhcCC-------chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHH----------
Q 001392 669 VQHTSNLYAANGAGVVLAEKGQ-------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA---------- 731 (1088)
Q Consensus 669 ~~~p~~~~a~~~la~~l~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~---------- 731 (1088)
..+|.|..+|+..+.++...+. ++++++++.+++...| .+..+|+.+..++...|...
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-----HNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999887 6899999999999998 88999999999998877640
Q ss_pred ------HHH-HHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCChhHH
Q 001392 732 ------LAM-KMYQNCLRKFYY-------NTDAQILLYLARTHYEAEQWQDCKKSLLRAI-HLAPSNYTLR 787 (1088)
Q Consensus 732 ------~Ai-~~~~~al~~~~~-------~~~~~~l~~La~~~~~~g~~~~A~~~l~~al-~~~p~~~~~~ 787 (1088)
... ..-+.|+..... ...+.++..|+.+|...|+..+|.++|+.+. +.+|-....+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 011 222223322222 3558899999999999999999999999987 5677654443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-14 Score=151.29 Aligned_cols=169 Identities=11% Similarity=-0.031 Sum_probs=154.8
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
-|.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+. ....+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHH
Confidence 388899999999999999999999999999999999999999999999999999999999999999999965 6667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFFT 281 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~ 281 (1088)
+..+...++...|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|++ ..++..++.++...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 8888999999999999999999999999999999999999999 999999999999999988 77888888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 001392 282 GQHFLVEQLTETALA 296 (1088)
Q Consensus 282 g~~~~A~~~~~~~l~ 296 (1088)
|+.+.|...+.+++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 888877777777663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=167.28 Aligned_cols=165 Identities=17% Similarity=0.125 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.+++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---chHHhHHHHHHHHHHHHHh
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---~~~~~~~~Al~~~~~al~~ 263 (1088)
+++..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++... |+ +++|+..|++++..
T Consensus 82 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhc
Confidence 999999999 778999999999999999999999999999999999999999999999 76 99999999999999
Q ss_pred CCCCHHHHHHHH
Q 001392 264 YPYCAMALNYLA 275 (1088)
Q Consensus 264 ~p~~~~~~~~la 275 (1088)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999877666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-14 Score=135.28 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=114.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
+-..|.+++.++|.++.+++.+|.+++..|++++|+..|.+++..+|.++.+|+.+|.++...|+|++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
|++ +.+++.+|.++..+|++++|+..|++++.++|+++...
T Consensus 86 p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999 77899999999999999999999999999999877553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-13 Score=146.17 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=155.0
Q ss_pred HHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH
Q 001392 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (1088)
Q Consensus 553 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~ 632 (1088)
...|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|. ..+..+
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~ 189 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGL 189 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999999999999999998884 444444
Q ss_pred HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 001392 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (1088)
Q Consensus 633 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (1088)
..+.. +... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|+. .
T Consensus 190 ~~~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~ 253 (287)
T 3qou_A 190 VAQIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---A 253 (287)
T ss_dssp HHHHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---G
T ss_pred HHHHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---c
Confidence 44444 5555 778889999999999999999999999999999999999999999999999832 2
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 743 (1088)
.+.++.+++.+|...|+.++|+..|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3889999999999999999999999998864
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-14 Score=135.80 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai 734 (1088)
+++..+-..|++++.++|+++.+++.+|.++...|++++|+.+|++++...| .++.+|+++|.+|..+|++++|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHH
Confidence 5555666778899999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 735 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 735 ~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
..|++++.. .|.++.+++.+|.+|...|++++|+.+|++++.+.|+++
T Consensus 91 ~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999 677889999999999999999999999999999999875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-15 Score=163.14 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHH----HhhcCCCChhhHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 108 EHFILATQYYNK----ASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1088)
Q Consensus 108 ~~~~~A~~~~~~----a~~~~p~~~~~~~~~g~~~~------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1088)
+.++.|+..+.. ++.++|.. +|..+|.... ..+++++|+..|..++..+|.++.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 457789999998 88888876 4444444432 45678889999999998899999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
++..|+|++|+..|++++.+.|.+. ..+++.+|.|+..+|++++|+..|.+++.++|+++.+++.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999984 47899999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV-EQLTETAL 295 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l 295 (1088)
|.++...|+ +++|+..|++++.++|.+..++..++.++...|++.++ ...+..++
T Consensus 237 g~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 GEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999988888887 44555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=131.10 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=113.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
-..|.+++..+|.++..++.+|..++..|++++|+..|.+++..+|+++.+|+.+|.++...|+|++|+..|++++.++|
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
++ +.+++.+|.|+..+|++++|+..|++++.++|+++........+
T Consensus 84 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 84 NE-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99 77899999999999999999999999999999887665444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-13 Score=148.04 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001392 421 ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1088)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1088)
..|++++|+..|.+++.+.+..+.... ..++.++|.+|...|++++|+.+|++++......
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------------ 109 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------------------ 109 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------------------
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------
Confidence 555555555555555555544322111 3456666666666667777777666666531100
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHcC
Q 001392 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARN 573 (1088)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g 573 (1088)
........++.++|.+|.. |++++|+.+|++++...|.. ..++..+|.++...|
T Consensus 110 -------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 110 -------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 0011134566666777766 77777777777776655432 456666777777777
Q ss_pred ChHHHHHHHHHHHHHCCCCh------hHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 574 NLQLSIELVNEALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 574 ~~~~A~~~l~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
++++|+.+|++++.+.|.+. .++..+|.++...|++.+|+..|++++ ..|.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 77777777777776654432 255566666677777777777777777 5554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-12 Score=142.15 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA-KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
.+++.+|..++.++.+..+.. ++. .|+++.|..+|.++ |.++...|+|++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 567889999999998876642 122 58999999999876 56788899999999999
Q ss_pred HHHHHhCCCC-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhhchHHhHHHHH
Q 001392 186 KRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--N----VEALVALAVMDLQANEAAGIRKGM 254 (1088)
Q Consensus 186 ~~al~~~p~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~~~~~~~~~Al 254 (1088)
.+++.+.+.. ...++..+|.+|..+|++++|+..|++++.+.+. + ..++..+|.++.. |+ +++|+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~---~~~A~ 135 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD---LSKAV 135 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC---HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC---HHHHH
Confidence 9999886532 2456788999999999999999999999987432 1 3456677777766 66 77777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001392 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1088)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1088)
.+|++++.+.|... + ......++..+|.+|...|++++|+.+|.+++..
T Consensus 136 ~~~~~Al~~~~~~~--------------~-----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 136 HLYQQAAAVFENEE--------------R-----------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT--------------C-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--------------C-----------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777776654220 0 0112356778888888888888888888888874
Q ss_pred cCCCCC---chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHhcCCHHHHHH
Q 001392 335 INKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQE 397 (1088)
Q Consensus 335 ~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 397 (1088)
.+..+. ...+++.+|.++...|++++|+.+|++++ .+|... ..+..++..+ ..++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 432221 23467888888888899999999999998 888643 2344555554 5667655544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=141.44 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCCh-------
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-------ACVEFNRGRYSDSLEFYKRALQVHPSCP------- 196 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~g~~~~Al~~~~~al~~~p~~~------- 196 (1088)
++..|.-+ ..+++..|...|.+++..+|..+.+|+++ +.++...+++.+++..+++.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 44455554 57999999999999999999999999999 7899999999999999999998776541
Q ss_pred -------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHh
Q 001392 197 -------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 197 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
..+++.++.++...|++++|...|..++...|.+. +.+.+|.+++..++ +.+|+..|..+...
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r---~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER---WTDVIDQVKSAGKW 164 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC---HHHHHHHHTTGGGC
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC---HHHHHHHHHHhhcc
Confidence 23344566667777777777777776666666555 66666666666655 55565555533322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-ch
Q 001392 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FI 342 (1088)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 342 (1088)
. ++ .....+++.+|.++...|++++|+..|.+++.. +..|. ..
T Consensus 165 ~--d~---------------------------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~ 208 (282)
T 4f3v_A 165 P--DK---------------------------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACAR 208 (282)
T ss_dssp S--CH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHH
T ss_pred C--Cc---------------------------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccH
Confidence 1 00 001247788888888888888888888888741 11133 55
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001392 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1088)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1088)
.+++.+|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 67788888888888888888888888888887 66655553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-12 Score=119.28 Aligned_cols=134 Identities=25% Similarity=0.493 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
.+|+.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.. ..+++.+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHH
Confidence 4677888889999999999999999998888888888889999999999999999999999888887 667888899999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
..|++++|+..|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 99999999999999998888888888888888888888 88888888888888775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=132.52 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhccc----chHHHHHHHH
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKAKETFR 617 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 617 (1088)
.+|+.+|+++... .++.+++.+|.++...+++++|+.+|+++... .++.+++.+|.+|.. + ++.+|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567788887764 67889999999999999999999999998765 578899999999888 6 8899999999
Q ss_pred HhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCC--CCHHHHhhHHHHHHh----cCCc
Q 001392 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAE----KGQF 691 (1088)
Q Consensus 618 ~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~l~~----~g~~ 691 (1088)
++.... +..+++.||.+ |....... +++.+|+.+|++++..+| .++.+++.||.+|.. .+++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~-y~~g~g~~--------~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARV-LVNRQAGA--------TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHTT---CHHHHHHHHHH-HTCGGGSS--------CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHCC---CHHHHHHHHHH-HHcCCCCc--------cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 887653 56777788877 76521111 678888888888888887 357888888888887 7788
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc-c-----CHHHHHHHHHHHHHH
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-G-----NFALAMKMYQNCLRK 743 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~-g-----~~~~Ai~~~~~al~~ 743 (1088)
.+|+.+|+++.+. | .++.++++||.+|... | ++.+|+.+|++++..
T Consensus 146 ~~A~~~~~~A~~~-~-----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 146 VKASEYFKGSSSL-S-----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHT-S-----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 8888888888876 3 3567888888888764 3 788888888888876
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=156.72 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=134.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
.|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 001392 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT---GQHFLVEQLTETALAV 297 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~ 297 (1088)
+++++++|++..++..+|.++...|+ +++|+..|+++++.+|.++.++..++.++... |++++|...+++++..
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999 9999999999999876
Q ss_pred cCCCCCchHHHHHHH
Q 001392 298 TNHGPTKSHSYYNLA 312 (1088)
Q Consensus 298 ~~~~~~~~~~~~~la 312 (1088)
.+ .....+..++
T Consensus 158 ~p---~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GV---GAVEPFAFLS 169 (568)
T ss_dssp TC---CCSCHHHHTT
T ss_pred CC---cccChHHHhC
Confidence 53 3334444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=128.30 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 661 ~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
-..|++++..+|.++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|+++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999998 78999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHh
Q 001392 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 741 l~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
+.. .|.++.+++.+|.+|...|++++|+.+|++++.+.|+++....
T Consensus 82 l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 82 AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 998 6778899999999999999999999999999999999887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-10 Score=134.62 Aligned_cols=209 Identities=11% Similarity=0.004 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001392 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437 (1088)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~ 437 (1088)
.......|++++...|..+.+|...+..+...|+.+.|..+|++++.. |.+...|+..+.....+. . +..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~---~---~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA---V---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH---H---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH---H---HHHHHH
Confidence 345678999999999999999999999999999999999999999999 998877776555432221 1 222221
Q ss_pred HHHhc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001392 438 LLKKA--------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1088)
Q Consensus 438 ~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1088)
..... ....+..+|...+....+.+..+.|..+|.++ ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-------------------------------- 314 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-------------------------------- 314 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------------------------------
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------------------------------
Confidence 11000 00012356777777777788899999999998 41
Q ss_pred hhccCCCCcCCCCcchHHHHhHHHHHHhcC-CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001392 510 RFENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1088)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 588 (1088)
++....++...|.+-...+ +++.|..+|+.+++..|+.+..+...+......|+.+.|..+|+++
T Consensus 315 -----------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~--- 380 (493)
T 2uy1_A 315 -----------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL--- 380 (493)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred -----------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 1123445555566555445 6999999999999999999888888888888999999999999997
Q ss_pred CCCChhHHHhhhhhhhcccchHHHHHHHHHhhh
Q 001392 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1088)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 621 (1088)
+....+|..+..+-...|+.+.+..++++++.
T Consensus 381 -~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 -EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888888888888999999999998875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=138.96 Aligned_cols=206 Identities=13% Similarity=0.016 Sum_probs=160.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhhchHHhHHHHHHHHHHHHHhCCCCH-----
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----- 268 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----- 268 (1088)
+..|..+ ..+++..|...|.+++.++|+..++|+.+ +.++...+. ..+++..+++.+.+.|...
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhc
Confidence 3444444 46788888888888888888888888888 677777666 6777778888887666433
Q ss_pred ----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001392 269 ----------------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1088)
Q Consensus 269 ----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1088)
.+...++.++...|+|++|..+|..++. ..|... ..+.+|.+++..+++++|+.+|..+.
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 3445578888999999999999987764 346666 88999999999999999999998665
Q ss_pred HhcCCCCC--chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 001392 333 KEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1088)
Q Consensus 333 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p 407 (1088)
. .++. ...+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|
T Consensus 163 ~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 163 K---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp G---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred c---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4 2112 13478999999999999999999999998543 54 567899999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001392 408 RDAQAFIDLGE 418 (1088)
Q Consensus 408 ~~~~~~~~la~ 418 (1088)
. ..++..|..
T Consensus 240 ~-~~~~~aL~~ 249 (282)
T 4f3v_A 240 E-PKVAAALKD 249 (282)
T ss_dssp C-HHHHHHHHC
T ss_pred c-HHHHHHHhC
Confidence 8 777665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-13 Score=149.68 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFN 174 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~ 174 (1088)
|.+|+..|.+++..+|.++.++..+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.+++.
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888889999999999999999999999999999999999998 6999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHH-
Q 001392 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG- 253 (1088)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A- 253 (1088)
.|+|++|+..|++++.++|.+ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++ +.+|
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~ 284 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLARE 284 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999 78899999999999999999999999999999999999999999999988 7777
Q ss_pred HHHHHHHHHh
Q 001392 254 MEKMQRAFEI 263 (1088)
Q Consensus 254 l~~~~~al~~ 263 (1088)
...|.+++..
T Consensus 285 ~~~~~~~~~~ 294 (336)
T 1p5q_A 285 KKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4466666543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-12 Score=117.91 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1088)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1088)
++..+|.+|...|... +|+.+|.+++..+|.++.+++.+|.++...|++++|+..|.+++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHH-----------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 4667788887777655 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
+..+|.++...|++++|+..|++++...|.. ..++..+|.++...|++++|...|.+++..+|.+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999998 6788999999999999999999999999998863
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=120.10 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=102.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001392 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1088)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1088)
..+..|+.+|..++..|++++|+..|.+++..+|+++.++..+|.+++..|++++|+..|++++.++|.+ +.+++.+|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 4466788899999999999999999999999999999999999999999999999999999999999998 778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 001392 206 CRYKLGQLGKARQAFQRALQLD------PENVEALVALAVMDL 242 (1088)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~ 242 (1088)
++..+|++++|+..|++++.++ |.+..++..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999998 888877777776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-12 Score=130.02 Aligned_cols=173 Identities=10% Similarity=0.057 Sum_probs=130.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHH
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----RYSDSLEFYKR 187 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~Al~~~~~ 187 (1088)
+|+.+|.++... .++.+++.+|.+|...+++++|+.+|++++.. .++.+++.+|.+|.. + ++.+|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 477788888764 67888888888888888888888888888764 578888888888877 6 88888888888
Q ss_pred HHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----hchHHhHHHHHHHH
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQ----ANEAAGIRKGMEKM 257 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~----~~~~~~~~~Al~~~ 257 (1088)
+.. +.+ +.+++.+|.+|.. .+++++|+.+|+++++..| .++.+++.||.+|.. .++ +.+|+.+|
T Consensus 79 A~~--~g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 79 AVE--AGS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHH--TTC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHH--CCC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 865 344 5667888888877 7888888888888888777 347888888888877 555 78888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 001392 258 QRAFEIYPYCAMALNYLANHFFFT-G-----QHFLVEQLTETALA 296 (1088)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~l~ 296 (1088)
+++... |.++.+++.|+.+|... | ++++|..+++++..
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 888777 55555666666666543 2 56666666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=129.12 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV-EFNRGRY--SDSLE 183 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~--~~Al~ 183 (1088)
.+++++|+..|.+++..+|.++.+|+.+|.+++..|++++|+.+|.+++..+|.++.++..+|.+ ++..|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56777999999999999999999999999999999999999999999999999999999999999 7899999 99999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.|++++..+|.+ ..+++.+|.++...|++++|+..|.+++.++|++......+
T Consensus 103 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 103 MIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999998 77899999999999999999999999999999876554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=140.85 Aligned_cols=197 Identities=11% Similarity=0.023 Sum_probs=138.8
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1088)
|.++..++.+|..++..|++++|+..|.+++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
.++..+|++++|+..|.+++.++|++...+.......+.. .++...........|.++.+...++.++ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------AKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999886532222222222221 1122222222334556665655555543 5666
Q ss_pred HHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 001392 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASVK 333 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 333 (1088)
+.|+..+..++.. .|........++..+... +.+++|..+|.++..
T Consensus 152 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6666666665543 244444444444444444 556666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=123.95 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=112.9
Q ss_pred HHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001392 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (1088)
Q Consensus 662 ~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al 741 (1088)
..|.+++..+|.+..+++.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 742 ~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.. .|.++.+++.+|.+|...|++++|+.+|++++.++|.++........+
T Consensus 80 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 80 LM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred hc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 98 677889999999999999999999999999999999988765554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=138.50 Aligned_cols=198 Identities=15% Similarity=0.027 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchH
Q 001392 447 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526 (1088)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (1088)
.+..+..+|..++..|++++|+..|.+++. ..|.++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~ 39 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT-------------------------------------------RNPLVAV 39 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCSCCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------------------hCCccHH
Confidence 367888999999999999999999999998 4577889
Q ss_pred HHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcc
Q 001392 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~ 606 (1088)
+++++|.+|...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|.+++.++|+++..+...++.....
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 119 (281)
T 2c2l_A 40 YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987765443333333322
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~ 686 (1088)
.. +...........+. +......++.+ .. |++++|++.|++++..+|.+......++.++.
T Consensus 120 ~~---~~~~~~~~~~~~~~-~~~i~~~l~~l---~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 180 (281)
T 2c2l_A 120 AK---KKRWNSIEERRIHQ-ESELHSYLTRL---IA------------AERERELEECQRNHEGHEDDGHIRAQQACIEA 180 (281)
T ss_dssp HH---HHHHHHHHHTCCCC-CCHHHHHHHHH---HH------------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhh-hHHHHHHHHHH---HH------------HHHHHHHHHHHhhhccccchhhhhhHHHHHHH
Confidence 22 22222222223333 44444445533 24 88999999999999999998888888888777
Q ss_pred hc-CCchHHHHHHHHHHHHhc
Q 001392 687 EK-GQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 687 ~~-g~~~~A~~~~~~~~~~~p 706 (1088)
.. +.+++|..+|.++.+..+
T Consensus 181 ~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 181 KHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHHHHhhhcccc
Confidence 76 778899999998877543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-11 Score=119.13 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..++.+|.+++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++..+|.+ +.+++.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999998 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhchHHhHHHHHHHHHHHHHh
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEI 263 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~~al~~ 263 (1088)
..+|++++|+..|.+++.++|.+..++..++.+ +...|+ +++|+..+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 999999999999999999999999888555444 666666 88888888876543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-12 Score=132.57 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=170.1
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhc
Q 001392 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1088)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~ 605 (1088)
...+.+.++|..+|++.... . .+....+...++..+ . +. |+..|++.+...+.+..++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46666778888888876421 1 111222333333333 2 22 7888888877766667777889999999
Q ss_pred ccchHHHHHHHHHhhhcCC-CCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCC------CHHHH
Q 001392 606 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 678 (1088)
Q Consensus 606 ~g~~~~A~~~~~~al~~~~-~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~ 678 (1088)
.|++++|+.++.+.+...+ .....+...++.+ |+.. |+.+.|.+.++++.+.+|+ .+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999888766 2245566666777 8888 8899999999999998882 33333
Q ss_pred hhHHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC--------
Q 001392 679 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-------- 746 (1088)
Q Consensus 679 ~~la~~l~~~g--~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~-------- 746 (1088)
..-+++....| ++..|..+|+++.+..| + .+..+++ ++..+|++++|...++.+++.+|.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 99999999999987765 3 2444555 899999999999999988887643
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHH
Q 001392 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nl 790 (1088)
+.++.++.+++.+.+..|+ +|.+++.++.+.+|++|.+.-..
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 6779999999999999998 89999999999999998754433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-12 Score=124.20 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=108.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
++.++..++.+|.+++..|+|++|+.+|.+++..+|.++.+++.+|.+++..|+|++|+..|++++.++|.+ ..+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 455678899999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
|.++..+|++++|+..|++++.++|++..+++.++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999887776665443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=145.98 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--Ch
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RY 178 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~ 178 (1088)
++|+..+++++..+|.+..+|..++.++...|+ +++|+.+++.++..+|++..+|..++.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 489999999999999999999999999999998 999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-----------
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----------- 246 (1088)
++++..+.+++..+|.+ ..+|...+.++..+| .+++++.++.++++.+|.+..+|..++.++...+.
T Consensus 126 ~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999 788999999999999 99999999999999999999999999999887511
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
.+.+++++.++.+++..+|.+..+|++++.++...+.+..
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2448999999999999999999999999999888777544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=125.47 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
.++.+|..++..|++++|+..|.+++ +| ++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 45666777777777777777777764 22 56677777777777777777777777777777776 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 210 LGQLGKARQAFQRALQLDPENV----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
+|++++|+..|++++...|.+. .+++.+|.++...|+ +++|+..|.+++..+|.+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCccc
Confidence 7777777777777777666655 677777777777777 777777777777777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=117.14 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=102.5
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
.|..+..++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++...|.+ ..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 456677888888888888888888888888888888888888888888888888888888888888888887 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
|.++..+|++++|+..|++++..+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=126.35 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=118.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHHcCCH--
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQL-- 213 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~-~~~~g~~-- 213 (1088)
.+...|++++|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.+ +.+++.+|.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcch
Confidence 34667899999999999999999999999999999999999999999999999999998 7789999999 8899998
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1088)
++|+..|.+++..+|++..+++.+|.++...|+ +++|+..|.+++..+|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999999999999 9999999999999999876443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=114.62 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=107.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHH
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1088)
+|.++..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+ +.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHH
Confidence 455677888899999999999999999999999999999999999999999999999999999999998888 6778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
|.++..+|++++|+..|++++..+|++..++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888888888888877765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=114.09 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
|..+..+..+|..++..|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|++++.++|+++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456789999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHF 278 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~------p~~~~~~~~la~~~ 278 (1088)
.++...|+ +++|+..|++++.++ |.+..++..+..+.
T Consensus 80 ~~~~~~~~---~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKE---YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhC---HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999 999999999999999 88887777766654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-09 Score=123.98 Aligned_cols=207 Identities=5% Similarity=-0.009 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhh
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 621 (1088)
.....+|++++...|.++..|+..+..+...|+.+.|...|.+++.. |.+..+|..++... ..++ ....+.....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999 99988887666552 1121 1111111111
Q ss_pred cCC-------CCC-h-HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcC-Cc
Q 001392 622 ATD-------GKD-S-YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-QF 691 (1088)
Q Consensus 622 ~~~-------~~d-~-~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g-~~ 691 (1088)
... .+. . ..+.. |....+ +.+..+.|..+|.++ ...+.....+...|.+....+ +.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~-----y~~~~~--------r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRIN-----HLNYVL--------KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp ----------CHHHHHHHHHH-----HHHHHH--------HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred hhccchhhhhcccccHHHHHH-----HHHHHH--------HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCCh
Confidence 111 001 1 12222 322211 126789999999999 433334455555565555555 69
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHH
Q 001392 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (1088)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~ 771 (1088)
+.|..+|+.++...| +++..|..++......|+.+.|..+|+.+. ....++......-...|+...+..
T Consensus 337 ~~ar~ife~al~~~~-----~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHP-----DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999887 677888888888899999999999999872 246666666666677899999999
Q ss_pred HHHHHHH
Q 001392 772 SLLRAIH 778 (1088)
Q Consensus 772 ~l~~al~ 778 (1088)
++++++.
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988885
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-11 Score=123.45 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001392 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (1088)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (1088)
..++.+|..|...|... +|+..|.+++ +| ++.+++.+|.+++..|++++|+..|.+++..+|.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWK-----------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCHH-----------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 34567788888777766 9999999996 34 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+++.+|.+++..|++++|+..|++++...|.+. ..+++.+|.++..+|++++|+..|++++.++|
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999988762 27899999999999999999999999999999
Q ss_pred CC
Q 001392 229 EN 230 (1088)
Q Consensus 229 ~~ 230 (1088)
++
T Consensus 153 ~~ 154 (213)
T 1hh8_A 153 EP 154 (213)
T ss_dssp SG
T ss_pred cc
Confidence 86
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=130.07 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHc
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNR 175 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~ 175 (1088)
+|...+.......+..+..+..+|..++..|+|++|+..|.+++...|.++ .++..+|.+++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444445566788899999999999999999999999988887 7888899999999
Q ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++..++..++.++...++
T Consensus 102 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 67788899999999999999999999999999998888888888887776
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-11 Score=117.15 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1088)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 159 (1088)
......+..+|.+|...|... +|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 356777888899988888766 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1088)
.++.+++.+|.++...|++++|+..|++++..+|.+ ..++ +.++..+...|++++|+..+.++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999998 5556 44455588899999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-11 Score=109.59 Aligned_cols=120 Identities=27% Similarity=0.503 Sum_probs=104.5
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 124 DMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 124 ~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
+|.. +.+++.+|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHH
Confidence 4555 67888899999999999999999999999999999999999999999999999999999999999888 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+|.++...|++++|+..|++++..+|.++.++..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998888888877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-12 Score=130.33 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------------
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------------- 196 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------------- 196 (1088)
..-..+......|.++.|...+.......+..+..+..+|.+++..|+|.+|+..|.+++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3344555666778888888888877777777788999999999999999999999999999999884
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 197 --GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1088)
Q Consensus 197 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1088)
..+++.+|.|+..+|++++|+..|.+++.++|.+..+++.+|.++...|+ +++|+..|++++.++|.++.++..+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 27899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhcCCHHHHH
Q 001392 275 ANHFFFTGQHFLVE 288 (1088)
Q Consensus 275 a~~~~~~g~~~~A~ 288 (1088)
+.++...++..++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877776655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-10 Score=122.61 Aligned_cols=256 Identities=12% Similarity=0.035 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
|..++ -..-.|..|+|..++.-.. +..|.+ ....+.+.++++.+|+|.... .+.....+...++..
T Consensus 14 ~~~lf-~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~ 80 (310)
T 3mv2_B 14 PMDYF-NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF 80 (310)
T ss_dssp -CCTH-HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH
Confidence 33444 3445566777777776332 333433 345556667777777776321 111111122222222
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~ 284 (1088)
+ . +. |+..|++.+...+.+..+++.+|.++...|+ +++|+..+.+.+..+| .+..+...++.++...|+.
T Consensus 81 ~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~---~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 81 L-D-TK---NIEELENLLKDKQNSPYELYLLATAQAILGD---LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp H-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred h-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH
Confidence 2 2 22 6777777776655556666777777777777 7777777777777775 6777777777777777777
Q ss_pred HHHHHHHHHHHhhcCCCCC----chHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcC
Q 001392 285 FLVEQLTETALAVTNHGPT----KSHSYYNL--ARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1088)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1088)
+.|.+.++.+.... |. ...+...+ +.+....| ++.+|+.+|+++.. ..|........+. ++..+|
T Consensus 153 d~A~k~l~~~~~~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln-~~~~~g 225 (310)
T 3mv2_B 153 STASTIFDNYTNAI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLN-LHLQQR 225 (310)
T ss_dssp HHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHhcC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHH-HHHHcC
Confidence 77777777776543 21 11333333 43355555 89999999999875 3343222222233 899999
Q ss_pred CHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001392 357 DFRSALTNFEKVLEI----------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1088)
Q Consensus 357 ~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~ 413 (1088)
++++|...++.+++. +|+++.++.+++.+....|+ .|.+++.++...+|+++.+.
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 999999999987776 48899999899888888887 88999999999999998665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=112.78 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~ 201 (1088)
+.++..+|..++..|+|++|+..|.+++..+|+++.++..+|.+++..|+|++|+..|++++.++|... ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999987662 24678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
.+|.++..+|++++|+..|++++...|+ +...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 8999999999999999999999998884 4433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-11 Score=113.40 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=106.3
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
.+|.++..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.+ +.+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999999998 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 001392 203 IGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1088)
+|.++..+|++++|+..|.+++.++|+ +..+...+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 55665555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-11 Score=117.51 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=108.9
Q ss_pred CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 671 ~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
++.++.++..+|.++...|++++|+.+|++++...| .++.+|+++|.+|+.+|++++|+..|++++.. .+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 455778899999999999999999999999999998 78999999999999999999999999999998 67789
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
.+++.+|.+|...|++++|+.+|++++.++|+++..+++.+++
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999988777775
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=112.66 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++ ..+++.+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999998 677889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 209 KLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
.+|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999998887643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-13 Score=157.07 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=134.6
Q ss_pred HHHHHHHHHHH----HhhcCCCChhhHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 109 HFILATQYYNK----ASRIDMHEPSTWVGKGQLL------------LAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1088)
Q Consensus 109 ~~~~A~~~~~~----a~~~~p~~~~~~~~~g~~~------------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1088)
.++.|+..+++ ++.++|.. +|...|... ...+++++|+..|..++...|.++.++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45677776666 66676643 222222211 1345667788888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCh--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
+..|+|.+|+..|++++.+.|.+. ..+++.+|.|+..+|++++|+..|.+++.++|++..+++.+|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 889999999999999988888874 467888889999999999999999999998888888888888
Q ss_pred HHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001392 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1088)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1088)
.++...|+ +++|+..|+++++++|.+..++..++.++...+++.++..
T Consensus 359 ~a~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 359 EAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8888989998888888888888888888877777776553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.8e-11 Score=127.69 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=144.7
Q ss_pred CCCCCChHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhch
Q 001392 20 DQLPRDASDILDILKA-EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98 (1088)
Q Consensus 20 ~~lp~~~~~l~~~L~~-e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~ 98 (1088)
+.|.-++.++...... .+.....|...+..|+.+|++++|+..+..++...+.. ......+..+..++.+|...|.
T Consensus 54 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T 2qfc_A 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVD 130 (293)
T ss_dssp TTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCC
Confidence 4555566777665543 34556688899999999999999999998875432210 1112334445567777766665
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHH
Q 001392 99 IETKQREKEEHFILATQYYNKASRIDMHE------PSTWVGKGQLLLAKGEVEQASSAFKIVL---EADRDNV----PAL 165 (1088)
Q Consensus 99 ~~~~~~~r~~~~~~A~~~~~~a~~~~p~~------~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~a~ 165 (1088)
.. +|+..|.+++...+.. ..++..+|.+|...|++++|+.+|++++ ...|.+. .++
T Consensus 131 ~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 131 YE-----------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HH-----------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 55 8999999998765543 4578889999999999999999999998 4556543 688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 001392 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (1088)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~ 226 (1088)
+.+|.+|...|+|++|+.+|++++...+. ....+++.+|.++..+|++++| ...|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999877532 1356788899999999999999 7778888764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=107.26 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=103.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
.+..++.+|..++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.+ +.+++.+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999999988 6778999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
+..+|++++|+..|++++..+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998888887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=125.40 Aligned_cols=182 Identities=11% Similarity=0.045 Sum_probs=145.9
Q ss_pred cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChh------HHHhhhhhhhcccchHHHHHHHHHhhhcCCCC-C
Q 001392 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D 627 (1088)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-d 627 (1088)
+|.....+...+..+...|++++|+..+.+++...|.... .++.+|.++...|++++|+..|.+++...+.. +
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4555667777888899999999999999999998876543 45678888899999999999999998754331 1
Q ss_pred ----hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHH---hcCCCCH----HHHhhHHHHHHhcCCchHHHH
Q 001392 628 ----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 696 (1088)
Q Consensus 628 ----~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~a~~~la~~l~~~g~~~~A~~ 696 (1088)
..++..+|.+ |... |++++|+.+|++++ ...|.+. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 3478889999 9888 99999999999999 4555532 688999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCchhHHHHHHHHHHHccCHHHH-HHHHHHHHHHhcCCCC
Q 001392 697 LFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNTD 749 (1088)
Q Consensus 697 ~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~A-i~~~~~al~~~~~~~~ 749 (1088)
+|++++...+.. .....+.+++++|.+|..+|++++| ..+|++++..+....+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 999999876421 1112377899999999999999999 7779999887644444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-11 Score=111.64 Aligned_cols=122 Identities=17% Similarity=0.263 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
.|.++.+++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|++++..+|.+..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1088)
|.++...|+ +++|+..|.+++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999 9999999999999999999888888888876653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-11 Score=111.36 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=114.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001392 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1088)
+|.++.+++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|+++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667889999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1088)
|.++...|+ +++|+..|.+++..+|.++.++..++.++...|++
T Consensus 87 ~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNK---HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCC---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999 99999999999999999999999999888887764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-12 Score=146.10 Aligned_cols=142 Identities=16% Similarity=0.248 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFN 174 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~ 174 (1088)
|.+|+..|..++..+|..+..+..+|..++..|+|++|+..|.+++..+|.+ ..+++.+|.+++.
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888899999999999999999999999999999999998 6899999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHH
Q 001392 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1088)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1088)
.|+|++|+..|++++.++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999 78899999999999999999999999999999999999999999999988 66555
Q ss_pred H
Q 001392 255 E 255 (1088)
Q Consensus 255 ~ 255 (1088)
.
T Consensus 406 ~ 406 (457)
T 1kt0_A 406 R 406 (457)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-11 Score=116.14 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
+..+..+|..++..|+|++|+..|.+++.. +|.++.+++.+|.+++..|+|.+|+..|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457888999999999999999999999998 66667888999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhh
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQA 244 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~ 244 (1088)
.++|.+ +.+++.+|.++..+|++++|+..|++++.++|++. .+...++.+....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999988 67788899999999999999999999999999887 5566666555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=127.47 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=116.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChh------HHHhhhhhhhcccchHHHHHHHHHhhhcCCC-CCh----HHHH
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-KDS----YATL 632 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~----~a~~ 632 (1088)
..+..+...|++++|..++++++...+..+. .+..+|.++...|++++|+..|++++...+. .+. .++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3355566677777777777777766655544 2234677777777888888888888774332 222 2577
Q ss_pred HhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc-------CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHh
Q 001392 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (1088)
Q Consensus 633 ~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~ 705 (1088)
.+|.+ |... |++++|+.+|++++.. .|....+++++|.+|...|++++|+.++.++++..
T Consensus 160 ~lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 160 AIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78888 8887 8889999999888842 12244567788888888888888888888888776
Q ss_pred cCC-CCCCchhHHHHHHHHHHHccC-HHHHHHHHHHHHHHhc
Q 001392 706 SGS-VFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFY 745 (1088)
Q Consensus 706 p~~-~~~~~~~~~~~la~~~~~~g~-~~~Ai~~~~~al~~~~ 745 (1088)
+.. .....+.+++++|.+|..+|+ +++|+..|++++..+.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 432 112236678888888888884 6888888888877653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-11 Score=113.72 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------NVP-----ALLGQACVEFNRGRYSDSLEFYKRALQV---- 191 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~la~~~~~~g~~~~Al~~~~~al~~---- 191 (1088)
...++.+|..++..|+|++|+..|++++..+|+ +.. +|..+|.++..+|+|++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346788899999999999999999999999888 333 7778888888888888888888888877
Q ss_pred ---CCCChhHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 192 ---HPSCPGAIR----LGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 192 ---~p~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
+|++ ..+| +.+|.++..+|++++|+..|+++++++|++....
T Consensus 91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 7776 5666 7777777777777777777777777777655433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-11 Score=109.97 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=94.9
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 749 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~---- 749 (1088)
...++..+|.++...|++++|+..|+++++..| +++.+|.++|.+|+.+|++++|+..|++++...|....
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 456778999999999999999999999999998 78999999999999999999999999999998655433
Q ss_pred -HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 750 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 750 -~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
..++..+|.++...|++++|+.+|++++...|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 468889999999999999999999999999985
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=111.69 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=108.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
..+|.+...++.+|..++..|++++|+..|++++..+|++ ..+++.+|.+++..|++++|+..|++++..+|.+ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH
Confidence 3457788899999999999999999999999999999987 8899999999999999999999999999999988 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
+++.+|.++..+|++++|+..|++++.++|++..++..++.+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88999999999999999999999999999999988887777643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-10 Score=106.99 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGI 203 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~l 203 (1088)
..++.+|.+++..|++++|+..|.+++..+|+++ .+++.+|.+++..|+|++|+..|++++..+|+++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678899999999999999999999999999887 7999999999999999999999999999998873 4568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
|.++..+|++++|+..|++++...|++..+...+..+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999999999998877666655443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-10 Score=103.91 Aligned_cols=121 Identities=29% Similarity=0.457 Sum_probs=108.3
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 158 DRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 158 ~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
+|.+ ..+++.+|.++...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|.+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4555 7789999999999999999999999999999988 6788999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 001392 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1088)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1088)
+|.++...|+ +++|+..|.+++..+|.++.++..++.++...|
T Consensus 83 la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999998 999999999999999999988888888776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-10 Score=108.94 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=104.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 156 ~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
..+|.++..++.+|.+++..|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|++++.++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3467889999999999999999999999999999999998 778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchHHhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 001392 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-----CAMALNYLANH 277 (1088)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~-----~~~~~~~la~~ 277 (1088)
.+|.++...|+ +.+|+..|.+++.++|. +..+...+..+
T Consensus 82 ~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 82 FLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999887 44444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=106.81 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
..++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357889999999999999999999999999999 7789999999999999999999999999999999999999999999
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
..|+ +++|+..|++++..+|.+.
T Consensus 97 ~~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHH---HHHHHHHHHHHHC------
T ss_pred HcCC---HHHHHHHHHHHHHhCcCCC
Confidence 9998 9999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=105.59 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=97.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChhHHH
Q 001392 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--CPGAIR 200 (1088)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--~~~~~~ 200 (1088)
++|.++.+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.+++..|++++|+..|++++...|. . ..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHH
Confidence 368888899999999999999999999999999999999999999999999999999999999999999998 7 6778
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 001392 201 LGIGLCRYKL-GQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 201 ~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 230 (1088)
+.+|.++..+ |++++|+..|.+++...|.+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 8999999999 99999999999999988865
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.8e-10 Score=131.06 Aligned_cols=173 Identities=12% Similarity=0.020 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC--
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-- 211 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-- 211 (1088)
.++|+..+.+++..+|.+..+|..++.++...|+ +++++..+.+++..+|++ ..+|...+.++..+|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccc
Confidence 4788999999999999999999999999999998 999999999999999999 788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQAN-EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT--------- 281 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~-~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~--------- 281 (1088)
++++++..+.++++.+|.+..+|...+.+....+ . +++++.++.++++.+|.+..+|+..+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999999999999999999999988 6 89999999999999999999999999998775
Q ss_pred -----CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHH
Q 001392 282 -----GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 282 -----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1088)
+.+++++.++.+++... |.+..+|+.++.++...+.+.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCccc
Confidence 34566666666666543 5555667777666666665433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=111.98 Aligned_cols=122 Identities=12% Similarity=0.172 Sum_probs=106.2
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcC--------CC-----CCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG--------SV-----FVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~--------~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
.+..+..+|..+...|++.+|+..|.+++...+. .. .+..+.+|+++|.||+.+|++.+|+..|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456788999999999999999999999998210 00 1266789999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh-hHHhHHHHHHHHH
Q 001392 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY-TLRFDAGVAMQKF 797 (1088)
Q Consensus 741 l~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~nla~~~~~~ 797 (1088)
+.. .|.++.+++.+|.+|...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 998 788899999999999999999999999999999999998 7788888864443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=126.22 Aligned_cols=175 Identities=9% Similarity=0.115 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HH
Q 001392 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IE 449 (1088)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~ 449 (1088)
++..+|.+|...|++++|+.++.+++...+.. ..+...++.++ ..|+++.|+.++..++...+..+.... ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778888888888888888888887765433 23445566677 788999999999999988877644333 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHH
Q 001392 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1088)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1088)
++.++|.++...|++.+|..++.+++.... .....+..+.++.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-------------------------------------~~~~~~~~~~~~~ 179 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFK-------------------------------------KLDDKPSLVDVHL 179 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-------------------------------------TSSCSTHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHH-------------------------------------hcccchhHHHHHH
Confidence 888999999999999999999999876321 0113456778899
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHcC---Cc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001392 530 NLARLLEQIHDTVAASVLYRLILFKYQ---DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 589 (1088)
.++++|...|++.+|..+|++++...+ .. ...+..+|.++...|++.+|..+|.+++...
T Consensus 180 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 180 LESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999887532 21 4567778888889999999999999988754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=124.95 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc---hhhHhhH
Q 001392 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYGL 348 (1088)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~l 348 (1088)
+..++..|+++.|..++..++......+.. ...+..+|.++...|++++|+.+|.+++......++. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566666666666666666533222221 1233446777777778888888888877633222221 3357777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEI---Y----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFID 415 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~ 415 (1088)
|.+|...|++++|+.+|++++.. . +....+++++|.+|...|++++|+.++.+++.+.+.. ..+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77788888888888887777742 1 1123467777777777777777777777777664322 667777
Q ss_pred HHHHH-hcC-CHHHHHHHHHHHHHHHHhcCC
Q 001392 416 LGELL-ISS-DTGAALDAFKTARTLLKKAGE 444 (1088)
Q Consensus 416 la~l~-~~~-~~~~A~~~~~~a~~~~~~~~~ 444 (1088)
+|.++ ..| .+++|+.+|++++.+....+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 77777 666 357777777777777665443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=117.03 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=120.7
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHh------cCCCCHHH
Q 001392 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 677 (1088)
Q Consensus 604 ~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~a 677 (1088)
+..|++.+|...++.+.. .|.....++..+|.+ |... |++++|+.+|.+++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345666666663333322 333345566666666 6666 777777777777776 34456678
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CC-CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HH
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~-~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~ 751 (1088)
+..+|.++...|++++|+..|.+++....... .+ ....++.++|.++..+|++++|+..|++++.......+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88999999999999999999999998853211 11 23567899999999999999999999999987655555 34
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001392 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1088)
Q Consensus 752 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p~ 782 (1088)
++..+|.++...|++++|..+|++++.+...
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-10 Score=100.77 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1088)
.+.+++.+|.+++..|++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|.+++..+|.++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35678899999999999999999999999999998 77889999999999999999999999999999999999999999
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+...|+ +.+|+..|.+++..+|.++.++..++.+.
T Consensus 82 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR---FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999998 99999999999999999998887776653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-09 Score=123.48 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=138.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
.|.+.+..|..+...|+|++|+..|..+++..|... .++..+|.+|...|++++|+.+|.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888999999999999999999999887643 357888889999999999999998888
Q ss_pred HhCCCCh-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 190 QVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 190 ~~~p~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
...+... ..++..+|.++...|+++.|+..+..++...+ ....++..+|.++...|+ +.+|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 159 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIN 159 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHH
Confidence 7765431 23455677777788888888888888876532 224566677777777777 777777777
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----CchHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 259 RAFEI------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYY 328 (1088)
Q Consensus 259 ~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1088)
+++.. .|....++..++.+|...|++.+|..++.+++......+ .....+..+|..+...|+|.+|..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 76654 122344555666666666666666666666554322111 12344555566666666666666666
Q ss_pred HHHHH
Q 001392 329 MASVK 333 (1088)
Q Consensus 329 ~~al~ 333 (1088)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=108.57 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------Ch----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-------CP----GAIRLGIGLCRYKLGQLGKARQAFQRALQL---- 226 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-------~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 226 (1088)
...+..+|..++..|+|++|+..|++++.++|+ +. ..+|.++|.|+..+|++++|+..|.+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999999 31 238999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 227 ---DPENVEAL----VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 227 ---~p~~~~a~----~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
+|++..+| +.+|.++...|+ +++|+..|+++++++|.+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999 999999999999999877643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=109.09 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1088)
..|.+.|++|+..|.++++++|.++.+|+.+|.++...|++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998875 48888888888888888888888888777
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
..|.+ .|.. +. ..|++++|+.+|+++++++|++..
T Consensus 92 ~lg~l-------------~P~~-~~----------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFL-------------TPDE-TE----------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHH-------------CCCH-HH----------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred Hhccc-------------Ccch-hh----------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 76532 2222 00 024566666666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-10 Score=113.25 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=96.6
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcC
Q 001392 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG 390 (1088)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g 390 (1088)
..|++++|...++.... .++....++..+|.++...|++++|+.+|.+++.. .|....++..+|.+|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333322 22344555666666666666666666666666552 2233456666777777777
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 001392 391 QIEKAQELLRKAAKI---DPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~---~p~~----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~ 461 (1088)
++++|+.++.+++.+ .+++ ..++..+|.++ ..|++++|+.++.+++...+..+.... ..++.++|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777776665 3322 44566677777 777777777777777776555432211 34567788888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 001392 462 GEFESAHQSFKDALGD 477 (1088)
Q Consensus 462 g~~~~A~~~l~~al~~ 477 (1088)
|++++|+.+|.+++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888888774
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=102.24 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN---VEALVAL 237 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 237 (1088)
.+++.+|.+++..|+|++|+..|++++...|+++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 45788999999999999999999999999998832 678999999999999999999999999999999 8899999
Q ss_pred HHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001392 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1088)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1088)
|.++...|+ +++|+..|++++..+|+++.+......+..
T Consensus 83 a~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGK---NTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999 999999999999999999877665555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-10 Score=103.63 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1088)
.+..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|++++...|... ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999877541 5578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
+.+|.++..+|++++|+..|++++...| ++..+..++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988 6777777776655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-11 Score=130.41 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=79.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1088)
.+..+..+|..++..|+|++|+..|.+++...|.+. .+++.+|.+++..|+|++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788899999999999999999999999998876 377777777777777777777777777
Q ss_pred HhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-chHHhHHHHHHHHHHHHHhCCCCH
Q 001392 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
.++|++ ..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.... +. ...+...|.+++...|.++
T Consensus 258 ~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 258 TEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCCC
Confidence 777777 666777777777777777777777777777777777777777664332 23 5666677777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-09 Score=104.15 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=109.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
.+|.+...++.+|.+++..|+|.+|+..|++++...|++ ...+++.+|.++...|++++|+..|.+++..+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 357789999999999999999999999999999999975 256789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
+.+|.++...|+ +++|+..|.+++..+|.+..++..++.+.
T Consensus 103 ~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGR---LDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999 99999999999999999998887776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-11 Score=139.47 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|+|++|+..|++++.++|.+ ..+++.+|.+|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 44566778888899999999999999999999999999999999999999999999999999999998 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhchHHhHHHHHHHHH-----------HHHHhCCCC
Q 001392 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQ-----------RAFEIYPYC 267 (1088)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~-----------~al~~~p~~ 267 (1088)
..+|++++|+..|+++++++|++..++..++.+ +...|+ +++|+..+. +++..+|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999998888888887 777777 889999888 666666653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=102.09 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=106.1
Q ss_pred CCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC-CC--
Q 001392 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD-- 749 (1088)
Q Consensus 673 ~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~-~~-- 749 (1088)
..+.++..+|.++...|++++|+.+|.+++...| .++.+++++|.+|...|++.+|+..|++++...+.. .+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3456788999999999999999999999999987 678999999999999999999999999999986542 33
Q ss_pred --HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 750 --AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 750 --~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
+.+++.+|.++...|++++|+.+|++++...| ++.+...++.++...
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999 688888888875443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=97.84 Aligned_cols=106 Identities=8% Similarity=-0.069 Sum_probs=101.5
Q ss_pred CCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--ChhHHHh
Q 001392 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSM 598 (1088)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~ 598 (1088)
.|.+..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+.++++++..+|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhhhhcc-cchHHHHHHHHHhhhcCCCC
Q 001392 599 LGDLELKN-DDWVKAKETFRAASDATDGK 626 (1088)
Q Consensus 599 l~~~~~~~-g~~~~A~~~~~~al~~~~~~ 626 (1088)
+|.++... |++++|+..|.+++...|..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999988763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-11 Score=142.01 Aligned_cols=126 Identities=13% Similarity=0.223 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
.++|++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCCHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLC--RYKLGQLGKARQAFQ-----------RALQLDPENVEA 233 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~a 233 (1088)
+++..+|++ ..++..++.+ +...|++++|+..++ +++.++|+...+
T Consensus 99 ~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 99 TVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 999999998 6678888888 889999999999999 888888775444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=121.55 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLE----------------ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
..+..+|..++..|+|++|+..|++++. .+|.+..++..+|.+++..|+|++|+..|++++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4578889999999999999999999988 566677788888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++
T Consensus 304 p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 877 66778888888888888888888888888888888888888777777665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=104.11 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 108 EHFILATQYYNKASRI---DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
|++++|+.+|++++.. +|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556777778887777 5777777777788877778888888888887777777777777777777777777777777
Q ss_pred HHHHHHhCCCC
Q 001392 185 YKRALQVHPSC 195 (1088)
Q Consensus 185 ~~~al~~~p~~ 195 (1088)
|++++...|.+
T Consensus 84 ~~~al~~~p~~ 94 (117)
T 3k9i_A 84 LLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCc
Confidence 77777777777
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=127.03 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCh-----------------hhHHHHHHHHHHcC
Q 001392 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP-----------------STWVGKGQLLLAKG 142 (1088)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~~g~~~~~~g 142 (1088)
+.....+..+|..|+..|++. +|+.+|.+++...|.+. .+|+.+|.+|+..|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~-----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLE-----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCH-----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566777777777776665 99999999999999876 48999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHHcCCHHHHHHHHH
Q 001392 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQ 221 (1088)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~-~~~~g~~~~A~~~~~ 221 (1088)
+|++|+..|.+++..+|+++.+++.+|.++...|+|++|+..|++++.++|++ ..++..++.+ ....+..+.+...|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 6778888888 445678889999999
Q ss_pred HHHhhCCCCHH
Q 001392 222 RALQLDPENVE 232 (1088)
Q Consensus 222 ~al~~~p~~~~ 232 (1088)
+++...|.++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999997653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-10 Score=104.97 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
.+.|++|+..|+.++..+|+++.+|+.+|.++...++++.+.... +.+++|+..|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~~l 69 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHHHH
Confidence 345666666666666666666666666666666665544222211 0245777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhch--------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 221 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1088)
+++++++|++..+|+.+|.+|...|. .+++++|+.+|+++++++|++......+..+
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777777777776642 1349999999999999999998877766543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-10 Score=103.94 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=79.1
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHH
Q 001392 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1088)
Q Consensus 140 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1088)
..|++++|+..|++++.. +|+++.+++.+|.+++..|+|++|+..|++++..+|++ +.+++.+|.|+..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 368888999999999988 58888889999999999999999999999999999988 77788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHH
Q 001392 217 RQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~ 235 (1088)
+..|++++...|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999888877644
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-09 Score=104.17 Aligned_cols=141 Identities=11% Similarity=0.050 Sum_probs=118.4
Q ss_pred HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC------HHHHhhHHHHHHhcCCchHHHHHHHHHH
Q 001392 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQ 702 (1088)
Q Consensus 629 ~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~la~~l~~~g~~~~A~~~~~~~~ 702 (1088)
.++..+|.+ |... |++++|+.+|.+++...|.. ..++..+|.++...|++++|+.+|.+++
T Consensus 10 ~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778888 8888 99999999999999886542 2578899999999999999999999999
Q ss_pred HHhcCCC-CCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001392 703 EAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1088)
Q Consensus 703 ~~~p~~~-~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~~La~~~~~~g~~~~A~~~l~~al 777 (1088)
...+... .+....++.++|.++...|++++|+..|++++.......+ +.++..+|.++...|++++|+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9875321 1123668999999999999999999999999988654444 5678899999999999999999999999
Q ss_pred HhCCC
Q 001392 778 HLAPS 782 (1088)
Q Consensus 778 ~~~p~ 782 (1088)
.+...
T Consensus 157 ~~~~~ 161 (164)
T 3ro3_A 157 EISRE 161 (164)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=118.37 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQ----------------VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~----------------~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
...+..+|..++..|+|++|+..|++++. ..|.. ..+++.+|.|+..+|++++|+..|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 55655 67889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001392 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1088)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1088)
++|++..+++.+|.++...|+ +++|+..|+++++++|.+..++..++.++...+++.++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999988888887777766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-09 Score=101.68 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP------STWVGKGQLLLAKGEVEQASSAFKIV 154 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~------~~~~~~g~~~~~~g~~~~A~~~~~~a 154 (1088)
....++..+|.+|...|... +|+.+|.+++...+... .++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFR-----------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556667777777666555 66666666666544322 35666777777777777777777777
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 155 LEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 155 l~~~p~~------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+...+.. ..++..+|.++...|++++|+..+++++...+.. ...++..+|.++...|++++|+..+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6654322 4466677777777777777777777776653211 2344566677777777777777777766
Q ss_pred HhhC
Q 001392 224 LQLD 227 (1088)
Q Consensus 224 l~~~ 227 (1088)
+.+.
T Consensus 156 ~~~~ 159 (164)
T 3ro3_A 156 LEIS 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=91.69 Aligned_cols=99 Identities=20% Similarity=0.175 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHH
Q 001392 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1088)
Q Consensus 659 ~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~ 738 (1088)
.|+..|++++..+|.++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466777777777787777777778877777888888888888777776 567777777777777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh
Q 001392 739 NCLRKFYYNTDAQILLYLARTHYE 762 (1088)
Q Consensus 739 ~al~~~~~~~~~~~l~~La~~~~~ 762 (1088)
+++...+...+......+...+..
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHH
Confidence 777776555555544444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-08 Score=89.87 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 001392 192 HPS 194 (1088)
Q Consensus 192 ~p~ 194 (1088)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-07 Score=108.45 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=150.8
Q ss_pred HHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC-CC
Q 001392 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS 673 (1088)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~ 673 (1088)
++..+...+.+.|++++|..+|..+...+-.++.+++..|... |........ ....+..++|..+|.++.... +.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~~~~~---~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAEAATE---SSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCCCCSS---SSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCCchhh---hhhcchHHHHHHHHHHHHHhCCCC
Confidence 4556667888999999999999999888777788888777666 543311100 011278999999999998876 33
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l 753 (1088)
|..+++.+...|++.|++++|..+|.++....- ..+..+|..+...|.+.|+.++|..+|+.+... +..++..++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 889999999999999999999999999988652 136788999999999999999999999999876 467889999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHH
Q 001392 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1088)
Q Consensus 754 ~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nl 790 (1088)
..|..+|.+.|+.++|.++|+++....-.-....|++
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999999999999988644333344444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.5e-08 Score=83.62 Aligned_cols=82 Identities=22% Similarity=0.509 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1088)
+.+++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ ..++..+|.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555 44455555554
Q ss_pred HHc
Q 001392 208 YKL 210 (1088)
Q Consensus 208 ~~~ 210 (1088)
..+
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9e-08 Score=82.72 Aligned_cols=84 Identities=27% Similarity=0.519 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
.++.+++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|++++.++|++..++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 346778888888888888888888888888888887 6678888888888888888888888888888888888888887
Q ss_pred HHHhh
Q 001392 240 MDLQA 244 (1088)
Q Consensus 240 ~~~~~ 244 (1088)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.2e-07 Score=102.96 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHC-CCChhHHHhhhhhhhcc---------cchHHHHHHHHHhhhcCCCCChHH
Q 001392 561 AYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYA 630 (1088)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~d~~a 630 (1088)
.+..+...+.+.|++++|+.+|.++...+ +.+..+|..+..++... +..+.|..+|..+...+-.++..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555667778888888888888877664 22455566665555443 457899999999999887789999
Q ss_pred HHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcC-CCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCC
Q 001392 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (1088)
Q Consensus 631 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~ 709 (1088)
+..|... |... |++++|..+|+++.... +.+..+++.+...|++.|++++|..+|..+.+..-
T Consensus 108 yn~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--- 171 (501)
T 4g26_A 108 FTNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--- 171 (501)
T ss_dssp HHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence 9999999 9998 99999999999999875 33889999999999999999999999999998752
Q ss_pred CCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 001392 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1088)
Q Consensus 710 ~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~ 762 (1088)
..+..+|..+..+|.+.|++++|..+|+++-... ..++..++..|-..+..
T Consensus 172 -~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 -VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred -CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 2367899999999999999999999999987653 56667777666655554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-08 Score=92.56 Aligned_cols=91 Identities=13% Similarity=0.243 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hhHHHHH
Q 001392 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLG 202 (1088)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~ 202 (1088)
+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|++ ...+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34555555555555666666666665555555555555555555555555555555555555555554 1223444
Q ss_pred HHHHHHHcCCHHHHHH
Q 001392 203 IGLCRYKLGQLGKARQ 218 (1088)
Q Consensus 203 lg~~~~~~g~~~~A~~ 218 (1088)
+|.++..+|+++.|+.
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 4555555544444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-07 Score=86.71 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 730 (1088)
+++++|+.+|+++...++... . +|.+|...+.+++|+.+|+++.+.. ++.++++||.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHcCCCCCccH
Confidence 889999999999999875443 3 9999999999999999999999864 68999999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCChhHHhHHH
Q 001392 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1088)
Q Consensus 731 ~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~nla 791 (1088)
.+|+.+|+++... .++..++.||.+|.. .+++.+|+.+|+++.+.. ++...++++
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999875 568999999999999 899999999999999984 556666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.2e-08 Score=84.98 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=56.9
Q ss_pred CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001392 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1088)
Q Consensus 671 ~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 750 (1088)
+|+++.+++.+|.++...|++++|+..|+++++..| +++.+|+++|.+|..+|++++|+..|++++...+...+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 567777777777777777777777777777777766 566677777777777777777777777777665544554
Q ss_pred HHHHHHHHHHHh
Q 001392 751 QILLYLARTHYE 762 (1088)
Q Consensus 751 ~~l~~La~~~~~ 762 (1088)
.....+...+..
T Consensus 78 ~~~~~l~~~l~~ 89 (100)
T 3ma5_A 78 KDLSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-08 Score=89.93 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=88.3
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC------hhHHH
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALS 597 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~ 597 (1088)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred hhhhhhhcccchHHHHHHHHHh
Q 001392 598 MLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
.+|.++...|++..|+..|+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999998888777666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.62 E-value=8e-08 Score=85.08 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
+|+++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.+.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56777777777777777777777777777777777777777777777777777777777777777766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=82.40 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al 182 (1088)
.+++.+|+.+|.++.+.. ++.+. +|.+|...+.+++|+.+|+++... .++.+++.+|.+|.. .+++.+|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467889999999998876 44444 999999989999999999999886 589999999999998 89999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
.+|+++... .+ +..++.+|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 82 ~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999999886 34 6678899999999 89999999999999887 3555555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=84.12 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
+.+|..++..|++++|+..|++++..+|.++. +++.+|.+++..|++++|+..|++++..+|++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 44566666666666666666666666666666 66666666666666666666666666666665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=82.80 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
.+.+|.+++..|++++|+..|++++..+|.+ .. +++.+|.++..+|++++|+..|++++.++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 3567889999999999999999999999998 66 89999999999999999999999999999999887743
Q ss_pred hchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 244 ANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
+. +.+++..|.++...+|.++
T Consensus 75 -~~---~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -KM---VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -HH---HHHHHHHHCCTTHHHHCCS
T ss_pred -HH---HHHHHHHHHHHhccCcccc
Confidence 22 7778888888777776543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-05 Score=82.56 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=91.3
Q ss_pred CCCcchHHHHhHHHHHHh---c--C------CHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHc-----CChHHHHHH
Q 001392 520 LPWNKVTVLFNLARLLEQ---I--H------DTVAASVLYRLILFKYQDY--VDAYLRLAAIAKAR-----NNLQLSIEL 581 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~-----g~~~~A~~~ 581 (1088)
..+.++..++..|.+... . | ....|...++++++++|++ ..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456778888877766532 1 3 3578889999999999994 66999999999995 999999999
Q ss_pred HHHHHHHCCCC-hhHHHhhhhhhhcc-cchHHHHHHHHHhhhcCCC
Q 001392 582 VNEALKVNGKY-PNALSMLGDLELKN-DDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 582 l~~al~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 625 (1088)
|++++.++|+. ..+++.+|..++.. |++..|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999885 9999999999999998776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-06 Score=91.76 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=108.8
Q ss_pred HhhcCCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----H---HHHH-HHH
Q 001392 120 ASRIDMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY----S---DSLE-FYK 186 (1088)
Q Consensus 120 a~~~~p~~~~~--~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~----~---~Al~-~~~ 186 (1088)
+...-|.++.+ ++.+|..++..+. +.+|+.+|+++++.+|+++.++..++.++.....+ . .++. .+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33445666655 4567888877765 58999999999999999999999888887632111 1 1111 111
Q ss_pred H--HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 187 R--ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 187 ~--al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
. ++...|.. +.++..++..++..|+++.|+..+++++.++| +..++..+|.++...|+ +++|+..|.+++.++
T Consensus 266 a~~a~~~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 NIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM---NREAADAYLTAFNLR 340 (372)
T ss_dssp HHHTCGGGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHhcccCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 1 12345666 67778888888888999999999999999997 46778889999999998 999999999999999
Q ss_pred CCCH
Q 001392 265 PYCA 268 (1088)
Q Consensus 265 p~~~ 268 (1088)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 9776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-06 Score=92.76 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH-------HHHH-HHHHH--HHHhCCCCHHHHHHHHHHHHHcCC
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-------EQAS-SAFKI--VLEADRDNVPALLGQACVEFNRGR 177 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~-------~~A~-~~~~~--al~~~p~~~~a~~~la~~~~~~g~ 177 (1088)
+.+.+|+.+|+++++++|+++.++..++.+|+....+ ..++ ..+.. ++..+|.++.++..++..+...|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 4577999999999999999999999988888632111 1111 12221 224568999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 001392 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1088)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1088)
++.|+..+++++.++|+ ...+..+|.++...|++++|+..|.+|+.++|....
T Consensus 293 ~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999975 456789999999999999999999999999997653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=75.72 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=73.3
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~-----~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
++.-++.+|..++..|+|..|+.+|+.+++..... ..+.++..||.++++.|++..|+.++++++.+.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46778899999999999999999999999987432 3388999999999999999999999999999999999999
Q ss_pred hHHHHH
Q 001392 788 FDAGVA 793 (1088)
Q Consensus 788 ~nla~~ 793 (1088)
.|+++.
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 999863
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-06 Score=74.29 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 124 DMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
+|.++..+..+|.+++..++ .++|...|++++..+|+++.+++.+|..++..|+|.+|+..+++++..+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888888888888876665 6889999999999999999999999999999999999999999998888874
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-06 Score=97.99 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=64.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHH
Q 001392 314 SYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLK 380 (1088)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~ 380 (1088)
.+..+|+|++|+.+|.+++... +..|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3444555555555555554421 233344445555555555555555555555555543 2222 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001392 381 ALGHIYVQLGQIEKAQELLRKAAKI-----DPRDA---QAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1088)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~~k~l~~-----~p~~~---~~~~~la~l~-~~~~~~~A~~~~~~a~~~ 438 (1088)
+||.+|..+|++++|..+|++++.+ .|+++ .....++.++ ..+.+.+|...|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665543 34443 2333444455 555666666666665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=96.47 Aligned_cols=136 Identities=4% Similarity=-0.139 Sum_probs=106.6
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 418 ~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
..+ .+|++++|+..+++++.+....-.+.. ..+++++|.+|..+|+|++|+.++++++.... ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~--~~lG-------- 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM--KLYH-------- 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHSC--------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHcC--------
Confidence 345 789999999999999988776532222 57889999999999999999999999998421 1111
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHH--------cCCcHHHHHHH
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRL 565 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l 565 (1088)
..+|.....+++||.+|..+|++++|+.+|++++.+ ||........+
T Consensus 387 -------------------------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 387 -------------------------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 156778889999999999999999999999999862 34445666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 001392 566 AAIAKARNNLQLSIELVNEALKV 588 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~al~~ 588 (1088)
+.++..++.+.+|...|.++.+.
T Consensus 442 ~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 442 MQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888777553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.8e-05 Score=77.95 Aligned_cols=192 Identities=14% Similarity=0.018 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcC---------------------ChHHHHHHHHHHHHHCCCChhHHHhhhhh
Q 001392 544 ASVLYRLILFKYQDYVDAYLRLAAIAKARN---------------------NLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1088)
Q Consensus 544 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~l~~al~~~p~~~~~~~~l~~~ 602 (1088)
.+.+++-++..+|++.......+..|..-. ++..|..+|.++....-.-.... .-+.+
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~-~~~~~ 129 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETA-YPGFT 129 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh-CccHH
Confidence 456677778889998766655555543321 13345555555443210000000 00011
Q ss_pred -hhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHh
Q 001392 603 -ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAAN 679 (1088)
Q Consensus 603 -~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~ 679 (1088)
-+..++. ..+..++......+...++..|.+ +...+...+.. -..-+....|...++++++++|+ +..++.
T Consensus 130 ~~~~~~~~----~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg-~~Al~~l~~A~a~lerAleLDP~~~~GsA~~ 203 (301)
T 3u64_A 130 REVFSGDE----QRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLG-SALPDTVHAAVMMLERACDLWPSYQEGAVWN 203 (301)
T ss_dssp HHHTSSCH----HHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTT-SCCHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHhcch----hhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCC-hHHHHhHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 1122221 234455554444466666655555 44432211110 01126778888899999999998 666888
Q ss_pred hHHHHHHhc-----CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH-ccCHHHHHHHHHHHHHHhcC
Q 001392 680 GAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA-QGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 680 ~la~~l~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~-~g~~~~Ai~~~~~al~~~~~ 746 (1088)
.+|.+|... |+.++|..+|++++++.|+ .+.++++.+|..++. +|++..|..++++++..-+.
T Consensus 204 ~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 204 VLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 888888874 7888888888888888872 137788888888777 48888888888888876443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.1e-06 Score=76.46 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1088)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~-p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 220 (1088)
..+.+.|...+..+|.+..+.+.+|.++.+.+ ++.+++.+|+.++..+ |......++.+|..++++|+|++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34445555555555555555555555555555 4445666666555555 4233455566666666666666666666
Q ss_pred HHHHhhCCCCHHHHHHH
Q 001392 221 QRALQLDPENVEALVAL 237 (1088)
Q Consensus 221 ~~al~~~p~~~~a~~~l 237 (1088)
+++++.+|+|..+....
T Consensus 95 ~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 66666666665554433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.7e-06 Score=70.51 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 158 DRDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
+|+++..+..+|.+++..++ ..+|..++++++..+|++ +.+++.+|..++..|+|.+|+..|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999999987665 799999999999999999 7778889999999999999999999999998874
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=73.71 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEAD-R-DNVPALLGQACVEFNRGRYSDSL 182 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~Al 182 (1088)
+.+..+...|.+.+..+|.++.+.+..|.++...+ ++++++.+|+.+++.+ | .+..+++.+|..+++.|+|.+|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44557888888888889999999999999999998 6779999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHHhCCCCh
Q 001392 183 EFYKRALQVHPSCP 196 (1088)
Q Consensus 183 ~~~~~al~~~p~~~ 196 (1088)
.+++++++..|++.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999993
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-05 Score=67.56 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHP------SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
+.-.+.+|..++..|+|..|+.+|+.++...+ .....++..+|.|++++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 44556677777777777777777777776531 123667788888888888888888888888888888887766
Q ss_pred HHH
Q 001392 236 ALA 238 (1088)
Q Consensus 236 ~la 238 (1088)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.8e-05 Score=88.03 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=73.3
Q ss_pred hcCCchHHHHHHHHHHHHhcC---CCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc---CCCC---HHHHHHHH
Q 001392 687 EKGQFDVSKDLFTQVQEAASG---SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY---YNTD---AQILLYLA 757 (1088)
Q Consensus 687 ~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~---~~~~---~~~l~~La 757 (1088)
..|++++|+.+++++++.... +.+|....++.+||.+|..+|+|++|+.+|++++..+. .+.+ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888888888876532 33445566788888888888888888888888887542 2223 55677888
Q ss_pred HHHHhhccHHHHHHHHHHHHHh-----CCCChhH
Q 001392 758 RTHYEAEQWQDCKKSLLRAIHL-----APSNYTL 786 (1088)
Q Consensus 758 ~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~ 786 (1088)
.+|..+|++++|...|++|+.+ .|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888775 4555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=9.1e-05 Score=83.86 Aligned_cols=104 Identities=8% Similarity=0.027 Sum_probs=84.9
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcC
Q 001392 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1088)
Q Consensus 460 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1088)
..|+|++|+.++++++.... .++ -..+|....++.++|.+|..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~--~~l---------------------------------g~~Hp~~a~~~~nLa~~y~~~g 354 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS--SVF---------------------------------EDSNVYMLHMMYQAMGVCLYMQ 354 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT--TTB---------------------------------CTTSHHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHhh--Ccc---------------------------------ChhchHHHHHHHHHHHHHHhhc
Confidence 46899999999999998421 111 1156677889999999999999
Q ss_pred CHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCChhHHHh
Q 001392 540 DTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (1088)
Q Consensus 540 ~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~ 598 (1088)
++++|+.++++++.+ +|+....+++||.+|..+|++++|..+|++++.+ .|++|.+...
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999973 4556778999999999999999999999999886 4777765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=64.84 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHH---HHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhccHH
Q 001392 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQ 767 (1088)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~---Ai~~~~~al~~~~~~--~~~~~l~~La~~~~~~g~~~ 767 (1088)
.+...|.+....++ .+..+.+++||++....+... +|.+++..++. .. ..-..+|+||.++++.|+|.
T Consensus 19 ~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 34445555544443 467788888888888776666 88888887765 21 23678999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 768 DCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 768 ~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
+|+++++.++++.|+|..+.--...+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999987755444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00023 Score=63.72 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-CCChhHHHHHHHHHHHHcCCHHHHHHH
Q 001392 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1088)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~---Al~~~~~al~~~-p~~~~~~~~~lg~~~~~~g~~~~A~~~ 219 (1088)
...+...|...+..++.+..+.+.+|.++.+..+... ++.+++.++... |......++.+|..++++|+|..|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445556666666666667777777777777666555 777777776665 433456677777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 001392 220 FQRALQLDPENVEALVALAVM 240 (1088)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~ 240 (1088)
++.+|+..|+|..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777765544433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00032 Score=79.55 Aligned_cols=107 Identities=5% Similarity=-0.078 Sum_probs=86.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHH
Q 001392 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1088)
Q Consensus 457 ~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1088)
-+...|++++|+..+++++.... . .....+|....++.++|.+|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~--~---------------------------------~lg~~h~~~~~~~~~L~~~y~ 340 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNS--E---------------------------------RLPDINIYQLKVLDCAMDACI 340 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSS--C---------------------------------CCCTTSHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhcc--C---------------------------------cCCccchHHHHHHHHHHHHHH
Confidence 35577999999999999997421 0 011145667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCChhHHHh
Q 001392 537 QIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (1088)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~ 598 (1088)
.+|++++|+.++++++.. +|.....++.||.+|..+|++++|..++++++.+ .|++|.+...
T Consensus 341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 999999999999999973 4555778999999999999999999999999876 5777765443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=80.32 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHhcCCHHHHHHHHHHHHhh-----cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHhh
Q 001392 278 FFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYG 347 (1088)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 347 (1088)
+...|+|++|+.++++++.. .+.+|....++.++|.+|..+|+|++|+.++.+++... +..|.....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34556666666666666542 22334445556666666666666666666666665421 233444445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLE 370 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~ 370 (1088)
+|.+|..+|++++|+.+|++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.51 E-value=0.076 Score=64.42 Aligned_cols=244 Identities=14% Similarity=0.069 Sum_probs=125.5
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------c----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCh-
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------Y----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 593 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~- 593 (1088)
.-+++.+|.++...+ .++..++...+..... . ..+.+.||.++.-.++ +++...+..++..+....
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 345555666655444 4677777777754320 1 1344556666555554 456677777665432211
Q ss_pred -hHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChH--HHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 001392 594 -NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY--ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1088)
Q Consensus 594 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~--a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 670 (1088)
.+-..+|.++...|+-+....++..+...... +.. +-.+||.+ .. |+.+.+-.+.+.+..
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll---~~------------g~~e~~~~li~~L~~- 552 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALI---NY------------GRQELADDLITKMLA- 552 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHH---TT------------TCGGGGHHHHHHHHH-
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhh---hC------------CChHHHHHHHHHHHh-
Confidence 24456777778888776666666655543221 221 23334432 22 444444444444333
Q ss_pred CCCCHH----HHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 671 HTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 671 ~p~~~~----a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
++ ++. +...+|..|+..|+...-..++..+... +. ++..-.-.+|..+...|+.+.+..++ .....
T Consensus 553 ~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~----d~VRraAViaLGlI~~g~~e~v~rlv----~~L~~ 622 (963)
T 4ady_A 553 SD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SN----DDVRRAAVIALGFVLLRDYTTVPRIV----QLLSK 622 (963)
T ss_dssp CS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SC----HHHHHHHHHHHHHHTSSSCSSHHHHT----TTGGG
T ss_pred CC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-Cc----HHHHHHHHHHHHhhccCCHHHHHHHH----HHHHh
Confidence 22 333 3345677778888865444466666542 20 12222233334444456654333333 32223
Q ss_pred CCCHHHHHHHHHHHHh--hcc-HHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHh
Q 001392 747 NTDAQILLYLARTHYE--AEQ-WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS 800 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~--~g~-~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~ 800 (1088)
..++.+.+..+.++-. .|. ..+++..+.++.+ + .+..++.+..+.+...+..
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D-~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-D-PVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-C-SSHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-C-CCHHHHHHHHHHHHHHhcC
Confidence 4566665554444433 233 2678888887754 3 3566666666665555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0014 Score=59.67 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=93.4
Q ss_pred CCCcchHHHHhHHHHHHhcCCH------HHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 520 LPWNKVTVLFNLARLLEQIHDT------VAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
..|.++..|......+...|++ +.-+..|++++..-|. |+..|.+.+.. ...++.+.|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5688999999999999999999 8888999999987664 46667777755 5669999999999999
Q ss_pred HHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001392 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1088)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~ 628 (1088)
+.+......+|...+.+..++|+...|.+++.+++...|.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9998888889999999999999999999999999999887433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00075 Score=63.11 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------VPALLGQACVEFNRGRYSDSLEFYKRALQVH---PSC- 195 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---p~~- 195 (1088)
.+++.....++..|.|+.|+-....++....++ ..++..+|.+++..|+|..|...|++++... +..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666667777777777777777655543222 2366777777777777777777777765531 111
Q ss_pred --------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 196 --------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 196 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
...+.+.++.|+..+|++.+|+..++.+-. .-..+.....||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 125788899999999999999988775321 123666777777664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.22 E-value=0.72 Score=56.06 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 001392 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1088)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1088)
|+.+..|..++++.+.+...|.+++. .++...-+.++..+...+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56788999999999999999999874 456666666776665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0048 Score=55.99 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=67.0
Q ss_pred CchhHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 712 QMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 712 ~~~~~~~~la~~~~~~g~---~~~Ai~~~~~al~~~~~~~-~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
..+.+.|++||++....+ ..++|.+++..++. .+. .-..+|+||..+++.|+|.+|+++...++++.|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 468899999999999865 45799999999886 333 378999999999999999999999999999999997755
Q ss_pred hHHHHH
Q 001392 788 FDAGVA 793 (1088)
Q Consensus 788 ~nla~~ 793 (1088)
--...+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.011 Score=53.78 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=35.2
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHH
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1088)
..++.+.|...|+.++.+......+|...|....++|+ ...|...+.+++.+.|....
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBCHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCcHH
Confidence 34566666666666666555555556666666666666 66666666666666665443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0066 Score=54.33 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHccC---HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHh
Q 001392 713 MPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~---~~~Ai~~~~~al~~~~~~~-~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
.+.+-+++||++.+..+ ..++|.+++..++. .+. .-..+++||.++++.|+|.+|+++...++++.|+|..+.-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 68899999999998764 45799999998886 332 3789999999999999999999999999999999987655
Q ss_pred HHHHH
Q 001392 789 DAGVA 793 (1088)
Q Consensus 789 nla~~ 793 (1088)
-...+
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.016 Score=52.62 Aligned_cols=82 Identities=10% Similarity=0.071 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001392 159 RDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1088)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1088)
+.++.+.+.+|.++.+..+. ..++.+++.++...|.......+.+|..++++|+|..|+.+.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34567777777777776643 467777777777777666777778888888888888888888888888888877655
Q ss_pred HHHHH
Q 001392 236 ALAVM 240 (1088)
Q Consensus 236 ~la~~ 240 (1088)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0045 Score=57.90 Aligned_cols=138 Identities=18% Similarity=0.138 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC------chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 001392 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT------KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1088)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1088)
++..-...++..|.|+.|+-+...++...+.++. ...++..+|.+++..|+|..|..+|.++++....-+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444455667778888888888887766544333 2457888999999999999999999998863322111111
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
+...++. ...+.. ... .+...++.+.++.||...+++.+|+..++.+-.. -..+.+...||.+|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 1101100 000000 011 1335577777888888888888888877654221 23566677777665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.019 Score=51.40 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 160 DNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
.++.+.+.+|.++.+..+ ...++.+++.++..+|......++.+|..++++|+|..|+.+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 356777788887777764 34688888888888876667778888888888888888888888888888888877665
Q ss_pred HHHHH
Q 001392 237 LAVMD 241 (1088)
Q Consensus 237 la~~~ 241 (1088)
...+.
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.31 Score=53.50 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
...+.+|..|.++|+.++...++..... +++.- +..-..+...|...+....... +..++--..+++.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~ 88 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP-----FLSSISKAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT-----GGGGSCHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHhchHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHH
Confidence 4789999999999999999999998643 23321 2222334555555555443222 2233333333333
Q ss_pred HhhcCCCChhhH----H--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 120 ASRIDMHEPSTW----V--GKGQLLLAKGEVEQASSAFKIVLEADRD--N----VPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 120 a~~~~p~~~~~~----~--~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
+- +.-..| + .+|..|+..|+|.+|...+.+++..-.. + ...+.....+|...+++.++...|.+
T Consensus 89 a~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 89 AK----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 222233 2 6899999999999999999988775321 1 45677778889999999999999988
Q ss_pred HHHhC------CCChhHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 001392 188 ALQVH------PSCPGAIRLGIGLCRY-KLGQLGKARQAFQRALQL 226 (1088)
Q Consensus 188 al~~~------p~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 226 (1088)
+.... |...+.+...-|..+. ..++|..|...|-.++..
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 86543 1123445566788888 899999999998888754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.013 Score=71.08 Aligned_cols=114 Identities=9% Similarity=-0.082 Sum_probs=88.3
Q ss_pred CHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHH
Q 001392 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1088)
Q Consensus 674 ~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l 753 (1088)
....++.+...|++.|++++|..+|..+.+..... ...+..+|..|...|++.|++++|.++|..+... +-.+|..+|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 45678889999999999999999998775431000 0136788999999999999999999999998765 367888999
Q ss_pred HHHHHHHHhhccH-HHHHHHHHHHHHhCCCChhHHhH
Q 001392 754 LYLARTHYEAEQW-QDCKKSLLRAIHLAPSNYTLRFD 789 (1088)
Q Consensus 754 ~~La~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~n 789 (1088)
..|..++++.|+. ++|.++|+.+....-.-..+.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 9999999999884 67889999888875544444454
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.14 Score=56.40 Aligned_cols=294 Identities=11% Similarity=0.067 Sum_probs=164.0
Q ss_pred hHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCChhHH--
Q 001392 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNAL-- 596 (1088)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~-- 596 (1088)
-.+.+.+|.+|...|++++-..++.......+..+ .....+...+.. -+..+.-++++..+++-..+.-..|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999888877654333322 222233333332 2444555566666655332222222
Q ss_pred ----HhhhhhhhcccchHHHHHHHHHhhhcCCCCC-h----HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHH
Q 001392 597 ----SMLGDLELKNDDWVKAKETFRAASDATDGKD-S----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1088)
Q Consensus 597 ----~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-~----~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~a 667 (1088)
..+|.+|+..|+|.+|...+.++.......| . ..+.....+ |... +++.++...|.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~a 165 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHHH
Confidence 3789999999999999999998887432212 1 122223334 5555 7778888888777
Q ss_pred HhcC---CCCH----HHHhhHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHH-
Q 001392 668 IVQH---TSNL----YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ- 738 (1088)
Q Consensus 668 l~~~---p~~~----~a~~~la~~l~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~- 738 (1088)
.... +.++ .....-|.++. ..++|..|...|-.+...+.....+....+...++.|-+-.+...+--....
T Consensus 166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~ 245 (394)
T 3txn_A 166 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSG 245 (394)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHS
T ss_pred HhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcc
Confidence 5532 1222 22334588888 8999999999999998777432211222334444555555554222222211
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHHhhhhhc-----CCCHHHHH
Q 001392 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT-----RRTADEVR 813 (1088)
Q Consensus 739 ~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~-----~~~~~~~~ 813 (1088)
.....+ ..+....+..|..+ +..+++.....++...-..-..|+.+.-++..+++......+.+. .-+++.+-
T Consensus 246 ~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA 323 (394)
T 3txn_A 246 KLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVA 323 (394)
T ss_dssp HHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHH
T ss_pred cccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHH
Confidence 111222 23334445555554 455677666665554333334566666666665555554433321 22344554
Q ss_pred HHHH-HHHHHHHHHHHHhhCC
Q 001392 814 STVA-ELENAVRVFSHLSAAS 833 (1088)
Q Consensus 814 ~a~~-~l~~A~~~f~~l~~~~ 833 (1088)
..++ ..+++...+..+...|
T Consensus 324 ~~l~ls~~evE~~L~~lI~dg 344 (394)
T 3txn_A 324 ESIQLPMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHCcCHHHHHHHHHHHHHCC
Confidence 4421 2345556666665544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.019 Score=69.56 Aligned_cols=111 Identities=14% Similarity=0.002 Sum_probs=91.4
Q ss_pred hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc----CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHH
Q 001392 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703 (1088)
Q Consensus 628 ~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~ 703 (1088)
..++.+|.+. |+.. |+.++|..+|..+... -..|+.+|+.|...|++.|++++|..+|.++.+
T Consensus 127 ~~TynaLIdg-lcK~------------G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 127 QQRLLAFFKC-CLLT------------DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567788888 9999 9999999999876542 234899999999999999999999999999998
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHccC-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 001392 704 AASGSVFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFYYNTDAQILLYL 756 (1088)
Q Consensus 704 ~~p~~~~~~~~~~~~~la~~~~~~g~-~~~Ai~~~~~al~~~~~~~~~~~l~~L 756 (1088)
.+- ..+..+|..+..++++.|+ .++|..+|+.+.... -.+|..++..+
T Consensus 194 ~G~----~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~l 242 (1134)
T 3spa_A 194 AGL----TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVL 242 (1134)
T ss_dssp TTC----CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSC
T ss_pred cCC----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccc
Confidence 763 1368899999999999998 478999999999874 45665555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=1.3 Score=52.99 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHH
Q 001392 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLA---KGEVEQASSAFKIVLEA--------DRDN----------VPALLGQ 168 (1088)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~l 168 (1088)
++.|+.+|+++...+|.... ++..+.+... ..+--+|+..+...++. .+.+ ...+...
T Consensus 265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 34688888888888875433 2222322221 12345566666666532 1222 2356667
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+..+..+|+|+-|+.+.++++...|.. -..|+.++.||..+|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 778888899999999999999999988 778899999999999999998777654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.1 Score=48.08 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001392 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1088)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1088)
|..+..-+.++.+++..|.|..|+-.+.. -+.+.+.+..+.|+...++|..|+..++.++.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55557778888999999999988876642 34577888889999999999999999999984
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=2.3 Score=49.93 Aligned_cols=142 Identities=8% Similarity=-0.047 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHh
Q 001392 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1088)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1088)
..+.-|..-++.|++..+..+...+-+-... ..+.+..+..+... .....+...+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~--------------~yl~y~~l~~~l~~-----------~~~~ev~~Fl 62 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPLY--------------PYLEYRQITDDLMN-----------QPAVTVTNFV 62 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTTSTTH--------------HHHHHHHHHHTGGG-----------CCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCcH--------------HHHHHHHHHhCccc-----------CCHHHHHHHH
Confidence 4567778888999999998887765322111 11222222211111 0111344456
Q ss_pred hcCCCChhhHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001392 122 RIDMHEPSTWVGKGQL---LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1088)
Q Consensus 122 ~~~p~~~~~~~~~g~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1088)
...|+.|..-..+... +...+++..-+.+|.. .|.+...-...+......|+-.+|......+....... +.
T Consensus 63 ~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p~ 137 (618)
T 1qsa_A 63 RANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PN 137 (618)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CT
T ss_pred HHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-cH
Confidence 6678887665444432 3346677766664443 37788777778888889999888888888777655444 33
Q ss_pred HHHHHHHHHHHcCCH
Q 001392 199 IRLGIGLCRYKLGQL 213 (1088)
Q Consensus 199 ~~~~lg~~~~~~g~~ 213 (1088)
.+-.+-..+...|.+
T Consensus 138 ~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 334444444444433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.68 E-value=1.3 Score=40.88 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh--------------
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-------------- 371 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------------- 371 (1088)
+.-..++.+++-.|.|..++-.+. .-+...+.+.-+.||...++|..|+.+++.++.-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 444556666667777777665553 2344555666677777777777777777777731
Q ss_pred ---CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 001392 372 ---YPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1088)
Q Consensus 372 ---~p~~~~-~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~ 412 (1088)
+|.+-+ .+..+|.++.+.|+.++|+.+|.......|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 233333 56677888888899999999998888887754433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.43 Score=53.82 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH----
Q 001392 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA---- 750 (1088)
Q Consensus 675 ~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~---- 750 (1088)
..+...+|..|...|+++.|.++|.+++....++. ...++++.+..+++..+++..+...+.++.......+++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34677899999999999999999999999876543 457889999999999999999999999998877666663
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
.+..+.|.++...++|..|...|..++.-....
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 344566778888999999999998888765544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.28 Score=58.67 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=50.5
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHH
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 740 (1088)
..-+..+..+|+++-|+.+.++++...| ..-..|+.|+.||..+|+|+.|+-.+..|
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-----seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELAL-----DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3346667788999999999999999998 78999999999999999999999886665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=19 Score=42.23 Aligned_cols=410 Identities=9% Similarity=-0.044 Sum_probs=208.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH--HHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL--GIGLC 206 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~--~lg~~ 206 (1088)
...+..+...+..|++..+......+ ...|- ..+.....+....+.. .-.-+...+..+|+.+..-.+ ..-..
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 34566777888888887766654432 22333 2233333322222221 122555566778887433222 22233
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1088)
+.+.+++..-+.+|.. .|.+....+..+......|+ ...|......+.......+..+..+...+...|....
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~---~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQ---SEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 4445666655554443 36777777777777777787 6667777777666655556566555555555444332
Q ss_pred H--HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------cCCCCCchhhHhhHHHHHHHc
Q 001392 287 V--EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE---------INKPHEFIFPYYGLGQVQLKL 355 (1088)
Q Consensus 287 A--~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~~~~~~~~~~~~la~~~~~~ 355 (1088)
. ..-+..++... .. .....++... . .....-...+..+... .............++......
T Consensus 155 ~~~~~R~~~al~~~--~~---~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 155 LAYLERIRLAMKAG--NT---GLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp HHHHHHHHHHHHTT--CH---HHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CH---HHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh
Confidence 1 11112222100 00 0000000000 0 0000000001111100 000011111223334444555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 001392 356 GDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431 (1088)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~ 431 (1088)
.+.+.|...+.......+-+.. .+..++.-+...+...++...+.+.....+++..........+..+++..|...
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 6889999999887654433332 222233333334435677777777665444443333333444477999999998
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001392 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (1088)
Q Consensus 432 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1088)
|..+..... ......+-+|..+...|+..+|..+|..+..... +...+....+..--.+
T Consensus 308 ~~~l~~~~~-----~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~----------------fYg~lAa~~Lg~~~~~ 366 (618)
T 1qsa_A 308 LARLPMEAK-----EKDEWRYWQADLLLERGREAEAKEILHQLMQQRG----------------FYPMVAAQRIGEEYEL 366 (618)
T ss_dssp HHHSCTTGG-----GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS----------------HHHHHHHHHTTCCCCC
T ss_pred HHHcccccc-----ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC----------------hHHHHHHHHcCCCCCC
Confidence 876543211 2367788899999999999999999999876311 1111111000000000
Q ss_pred ccCCCCcCCCCc---chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 512 ENDGNHVELPWN---KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1088)
Q Consensus 512 ~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 582 (1088)
. ......... ........+..+...|....|...+..++... .......++.+....|.+..++...
T Consensus 367 ~--~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 367 K--IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp C--CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 000000000 11123455677888899999988887776542 2344556777777888887776444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.65 E-value=4.4 Score=49.83 Aligned_cols=191 Identities=18% Similarity=0.100 Sum_probs=104.3
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCH
Q 001392 135 GQLLLAKGEVEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1088)
....+..+++++|.. ++.. -| +...+...+..+...|.++.|+...+ + +...+ .....+|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~-~~~~f---~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------D-QDQKF---ELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------C-HHHHH---HHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------C-cchhe---ehhhhcCCH
Confidence 344556788888876 4411 11 01222555566677788888776552 2 22223 334667888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001392 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1088)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1088)
+.|.+..+ ..++...|..+|..++..++ ++.|..+|.++-. . ..+..++...|+.+.
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~~---~~~A~~~y~~~~d-----~---~~l~~l~~~~~~~~~------- 725 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRFN---FKLAIEAFTNAHD-----L---ESLFLLHSSFNNKEG------- 725 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTC-----H---HHHHHHHHHTTCHHH-------
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcCC---HHHHHHHHHHccC-----h---hhhHHHHHHcCCHHH-------
Confidence 88887753 33567888888988888888 8888888776421 1 112222333343333
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
+..++......|++..|...|.+.-. +.....+|...+++++|+.+.+. ..|
T Consensus 726 --------------~~~~~~~a~~~~~~~~A~~~~~~~g~-----------~~~a~~~~~~~~~~~~A~~lA~~---~~~ 777 (814)
T 3mkq_A 726 --------------LVTLAKDAETTGKFNLAFNAYWIAGD-----------IQGAKDLLIKSQRFSEAAFLGST---YGL 777 (814)
T ss_dssp --------------HHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH---TTC
T ss_pred --------------HHHHHHHHHHcCchHHHHHHHHHcCC-----------HHHHHHHHHHcCChHHHHHHHHH---hCC
Confidence 33344444445555555554433210 22233455566667777666554 344
Q ss_pred Cc---HHHHHHHHHHHHhcCCHH
Q 001392 374 DN---CETLKALGHIYVQLGQIE 393 (1088)
Q Consensus 374 ~~---~~~~~~la~~~~~~g~~~ 393 (1088)
.. ..+....+.-+...|+..
T Consensus 778 ~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 778 GDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ChHHHHHHHHHHHHHHHhccchh
Confidence 33 234444455555556543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.61 E-value=3.3 Score=46.63 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC--
Q 001392 377 ETLKALGHIYVQLGQIEKAQELLRKAAKID--PRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-- 447 (1088)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~k~l~~~--p~~----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 447 (1088)
.+...|+.+|...|++.+|..++..+..-. ..+ ...++....++ ..+++.+|..++.++.........+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 455677888888888888888888775321 111 45666677777 888999998888887654333222211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~ 477 (1088)
..++...|.++...++|.+|..+|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356677899999999999999999998863
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.57 E-value=9.3 Score=42.95 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=78.2
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHH---HCCCChh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALK---VNGKYPN 594 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~p~~~~ 594 (1088)
...+...|+.+|...|++.+|..++..+....-. -.+.++....++...+++..|..++.++.. ..+..+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4567788999999999999999999988653211 267888888999999999999999998743 2333333
Q ss_pred ----HHHhhhhhhhcccchHHHHHHHHHhhhc
Q 001392 595 ----ALSMLGDLELKNDDWVKAKETFRAASDA 622 (1088)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 622 (1088)
.+...|.++...++|.+|-..|..+...
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5567888899999999999999887653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.22 E-value=4.1 Score=50.13 Aligned_cols=130 Identities=20% Similarity=0.125 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001392 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1088)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1088)
..++..+...|.++.|+...+... .. .......|+++.|.++... .++...|..+|..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHH
Confidence 556666777788777775542111 11 2345677888888877533 3567888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001392 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467 (1088)
Q Consensus 389 ~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (1088)
.++++.|..+|.++- +.. .+..++ ..++.+......+.+.. .+ -+.....++...|++++|
T Consensus 694 ~~~~~~A~~~y~~~~-----d~~---~l~~l~~~~~~~~~~~~~~~~a~~----~~------~~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAH-----DLE---SLFLLHSSFNNKEGLVTLAKDAET----TG------KFNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp TTCHHHHHHHHHHHT-----CHH---HHHHHHHHTTCHHHHHHHHHHHHH----TT------CHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHcc-----Chh---hhHHHHHHcCCHHHHHHHHHHHHH----cC------chHHHHHHHHHcCCHHHH
Confidence 888888888888762 222 233333 34444443322222211 11 011123345567777777
Q ss_pred HHHHHHHH
Q 001392 468 HQSFKDAL 475 (1088)
Q Consensus 468 ~~~l~~al 475 (1088)
+++|.++-
T Consensus 756 ~~~~~~~~ 763 (814)
T 3mkq_A 756 KDLLIKSQ 763 (814)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77776543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.75 Score=51.79 Aligned_cols=121 Identities=11% Similarity=0.116 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---NVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
..+.+.+..+.+-......-..++..+|..|+..|+++.|.++|.++...... -...++....+++..++|..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44445554444422233345568899999999999999999999998775432 367888888999999999999999
Q ss_pred HHHHHHhCC---CC--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001392 185 YKRALQVHP---SC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1088)
Q Consensus 185 ~~~al~~~p---~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1088)
+.++..... +. ...+....|..++..++|..|...|-.++....
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 999866532 11 223445567777888999999888888776543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.19 E-value=1.1 Score=45.71 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001392 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1088)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1088)
+.+.+..|+..+...++.+|.++.....+..+++-.|+|++|...++.+.+++|.....-..+-.+ -.|...=
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~R 81 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQAR 81 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHHH
Confidence 345566999999999999999999999999999999999999999999999999764432111110 0111111
Q ss_pred HHHHHh--CC---CChhH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 186 KRALQV--HP---SCPGA--IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 186 ~~al~~--~p---~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
..++.- .| ..++. ..+.-+......|+.++|...-..+++.-|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 222221 12 22122 23445666667899999999999999887754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.14 E-value=2.3 Score=43.23 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001392 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1088)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1088)
.++..|++++|+..+...++.+|.|......+..+++-.|+++.|+.-++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34566777777777777777777777777777777777777777777777777777766
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.90 E-value=18 Score=38.24 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhh----------------hh
Q 001392 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIET----------------KQ 103 (1088)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~----------------~~ 103 (1088)
+.+-+++.=|.++++|++|+.+|-.+... ++... ...-..+-..|..+|...+.... ..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~----ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQT----LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 35667788899999999999998885321 11110 00112223334455554432211 01
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001392 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1088)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1088)
..|......|+.+-.+.-...-.+|..+..+|..|+..|++.+|...|- +..+ +.+..+..+-.-++..+
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~~~------- 181 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYKQD------- 181 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHHTS-------
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHHhc-------
Confidence 1234444555555444222223466677777777777777777766662 1111 11122221111111111
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCC------------------CCHHH-HHHHHHH
Q 001392 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ----LDP------------------ENVEA-LVALAVM 240 (1088)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p------------------~~~~a-~~~la~~ 240 (1088)
.|.............|..+++...|..+|...++ .+| ..+.. +..+..+
T Consensus 182 --------~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLll 253 (336)
T 3lpz_A 182 --------ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLL 253 (336)
T ss_dssp --------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHH
T ss_pred --------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHH
Confidence 2333222223344566778888888876655443 222 22221 2222333
Q ss_pred HHhhchHHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Q 001392 241 DLQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFT 281 (1088)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~ 281 (1088)
.+..+....+..-...|...++.+| .....+..+|..||..
T Consensus 254 t~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 254 SVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 3344444446666667777777777 6777777788887754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.58 E-value=3.1 Score=39.60 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~ 402 (1088)
+..|+++.|.+..+.+ ++...|..||......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4556666665555443 34556666666666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.32 E-value=6.4 Score=37.38 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=27.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
...|+++.|..+.+.+ ++ ...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4566666666665543 22 455666666666666666666666654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.62 Score=52.45 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHh-----------cCCCCHHHHhhHHHHHHhcCCchHHHH----------HHHHHHHHh-cCCCCCC
Q 001392 655 THLEKAKELYTRVIV-----------QHTSNLYAANGAGVVLAEKGQFDVSKD----------LFTQVQEAA-SGSVFVQ 712 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~-----------~~p~~~~a~~~la~~l~~~g~~~~A~~----------~~~~~~~~~-p~~~~~~ 712 (1088)
+++++|..+-..++. +++-+.-.|+.++.++...|+...... .+-.+.... .......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 777777776655441 123344455666666666676654322 222222222 1111112
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCh
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--~~---~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 784 (1088)
...++..+-..|+..+.|+.|..+..++. ||.+ ++ ...++++|+++.-.++|.+|.++|..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35567777889999999999999988773 5533 22 56678999999999999999999999999998764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.43 E-value=20 Score=45.83 Aligned_cols=168 Identities=11% Similarity=0.002 Sum_probs=91.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhc
Q 001392 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD-PENVEALVALAVMDLQAN 245 (1088)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~ 245 (1088)
.+...+...+.++-+.. .+...|.+ +...+.+|.++...|++++|..+|.++-.-- +.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------S
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------h
Confidence 34445666666655543 33455666 3446778888888888888888887763211 110000 0
Q ss_pred hHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc--hHHHHHHHHHHHhcCCHHH
Q 001392 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK--SHSYYNLARSYHSKGDYEK 323 (1088)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~~~~la~~~~~~g~~~~ 323 (1088)
. .. ....+..........+..+.++..++...+.++.++.+...++......... ...|..+-..+...|+|++
T Consensus 881 ~---~~-~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 V---LR-EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp S---HH-HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred h---hc-ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0 00 0000000011122234566677777888888888888888888765433321 2356667777777888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCH
Q 001392 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1088)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1088)
|...+...-. .......+..+...++..|..
T Consensus 957 Ay~aL~~~pd----~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 957 AHVALMVLST----TPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGHHHHHHHH----SSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCC----HHHHHHHHHHHHHHHHhCCCh
Confidence 8776654432 223333444454555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=3.5 Score=45.56 Aligned_cols=89 Identities=25% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001392 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV----------------------PALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1088)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1088)
.|......|+...|...+..++......+ .++..++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444556788888888888877642211 12223334444455555555555555555
Q ss_pred CCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+|-+ ..++..+..+++..|+..+|+..|.++
T Consensus 201 ~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 201 HPYR-EPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp STTC-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544 344444555555555555555544443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.03 E-value=12 Score=47.92 Aligned_cols=144 Identities=9% Similarity=-0.043 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH-------------------- 192 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------------------- 192 (1088)
.+...+...|.++-|.. .+...|.++...+.+|.+++..|++++|..+|+++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34555667777766554 345678888888999999999999999999998763210
Q ss_pred C--CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH----HHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCC
Q 001392 193 P--SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVE----ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1088)
Q Consensus 193 p--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~----a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1088)
+ ...+..|+.+..++.+.|.++.++..-..|++..+. +.. .|..+-..++..++ |++|...+...-. ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~~pd-~~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMVLST-TP 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHHHHH-SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHhCCC-HH
Confidence 1 112344666777888888888888888888876543 322 34555556666666 6666655543321 12
Q ss_pred CCHHHHHHHHHHHHhcCCH
Q 001392 266 YCAMALNYLANHFFFTGQH 284 (1088)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~ 284 (1088)
.....+..|....+..|..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 2344455555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=14 Score=40.66 Aligned_cols=124 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001392 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1088)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1088)
|......|+...|...+..++.....++ ..... ...+-. ....++.. ...+...++..+...|
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~-L~~~~---------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g 185 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPV-LDDLR---------DFQFVEPFATALVED------KVLAHTAKAEAEIACG 185 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSST-TGGGT---------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCC-CCCCC---------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence 4444557899999999999987543221 11110 011111 11112211 1235566778888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHH
Q 001392 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPIEVL 451 (1088)
Q Consensus 391 ~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~ 451 (1088)
++.+|+..+..++..+|-+..++..+..++ ..|+..+|+..|..+...+... +..+.+.+.
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 999999999999999999999999999998 9999999999999998876543 544444443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.47 E-value=4.5 Score=45.59 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKP----HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
..+..+-+.|...+.|++|..+..++. ++.. ...+.-++.+|.++.-.++|.+|..++..++...|
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 334444445555555555555554442 1100 01122244455555555555555555555555444
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.96 E-value=3.8 Score=46.52 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
.+..+|.+......+..|..+|.++..+.|++...++.||.+....|+.-.|+-+|-+++......+.+..+|..++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 35567777777777788888888888888888888888888888888888888888888877666777777777766
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.16 E-value=4.9 Score=45.63 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
.+..+|.+......+..|..+|.+++.+.|.+ ..++..+|.+....|+.-.|+-+|.+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 56677777777777788888888888888877 67778888888878888888888888777666677777777766654
Q ss_pred h
Q 001392 244 A 244 (1088)
Q Consensus 244 ~ 244 (1088)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1088 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-26 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-12 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 9e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 7e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.002 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 9e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 9e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-05 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 3e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 8e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 1e-27
Identities = 64/440 (14%), Positives = 134/440 (30%), Gaps = 61/440 (13%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G + L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ +P EA L + + + + R + + L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ Y + + + +K I F
Sbjct: 121 VQAYV---------SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A +L + A ++A E P + N+ EKG
Sbjct: 232 LSPNHAVVHGNLACVYYE------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
A + AL
Sbjct: 286 SVAEAEDCYNTALRL-------------------------------------------CP 302
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 583 NEALKVNGKYPNALSMLGDL 602
EA++++ + +A S +G+
Sbjct: 363 KEAIRISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 2e-27
Identities = 63/389 (16%), Positives = 136/389 (34%), Gaps = 30/389 (7%)
Query: 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV 91
+ + E + L+++ +F+ ++++ + + + A+ + G
Sbjct: 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ R K + E + +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA------------------Y 124
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
L+ + D + GR ++ Y +A++ P+ A +G G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQG 183
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271
++ A F++A+ LDP ++A + L + +A + + RA + P A+
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALSLSPNHAVVH 240
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
LA ++ G L A+ + P +Y NLA + KG +A Y
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN-- 295
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ L ++ + G+ A+ + K LE++P+ L + Q G+
Sbjct: 296 -TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+++A ++A +I P A A+ ++G L
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (272), Expect = 5e-26
Identities = 62/373 (16%), Positives = 122/373 (32%), Gaps = 44/373 (11%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ E A + + DN LL + + F R S F A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 195 CPGA-IRLGIGL-----------------------------CRYKLGQLGKARQAFQRAL 224
A LG L G A Q +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + + + + + +A E P A+A + L F G+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+L E A+ + P +Y NL +++A Y+ + ++
Sbjct: 186 WLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNHAVV 239
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L V + G A+ + + +E+ P + L + + G + +A++ A +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A + +L + + A L +KA E P +N+ + ++G
Sbjct: 300 LCPTHADSLNNLANIKRE------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 463 EFESAHQSFKDAL 475
+ + A +K+A+
Sbjct: 354 KLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 1e-23
Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 40/403 (9%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467
A+A+ +LG + LK + I + + +G ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---------- 517
+ + + L + K A K ++ F ++
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 518 -----------VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566
V L N + NL +L++ A Y L ++ + LA
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 567 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 626
+ + + L+I+ A+++ +P+A L + + +A++ + A
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA------- 297
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
L A N K E ++E+A LY + + A + VL
Sbjct: 298 -------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729
++G+ + + + + D + N+ + +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.8 bits (229), Expect = 2e-20
Identities = 65/420 (15%), Positives = 141/420 (33%), Gaps = 38/420 (9%)
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 438
L H Q G E A+ + + +P + + L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF------QCRRLDRSAHF 55
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
A ++ P E +N+G ++ E+G+ + A + ++ AL +
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------FIDGYIN 106
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
+ + + + ++ + V +L LL+ + A Y +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616
++ A+ L + A+ + L+I +A+ ++ + +A LG++ + + +A +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676
A A + E ++ A + Y R I
Sbjct: 227 LRALS--------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
A L EKG ++D + + D NLA++ QGN A+++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
Y+ L + A LA + + Q+ AI ++P+ + G +++
Sbjct: 328 YRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 26/156 (16%)
Query: 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY------- 93
+ +A Y++QG ++ + E+ ++ D L G
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 94 -------------TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
L I+ +Q EE A + Y KA + + +L
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+G++++A +K + A
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 3e-18
Identities = 31/241 (12%), Positives = 62/241 (25%), Gaps = 16/241 (6%)
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
S ++ ++A + + +LG L + +Q+ L D E +
Sbjct: 5 SAQYLRQAEVLKADMTDS-KLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 241 DLQANEAAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
A + +G K + A +L F QL + V N
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF------YTQLLQELCTVFN 114
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L + + +S LG +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQHC---LVHLGDIARYRNQTS 169
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A + + ++ P N + L + G ++ + A +L +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 420 L 420
L
Sbjct: 230 L 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (160), Expect = 1e-11
Identities = 32/363 (8%), Positives = 87/363 (23%), Gaps = 60/363 (16%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ QY +A + + +G ++ ++ ++
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL------------------------- 39
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
Y++ L ++ L + Q +
Sbjct: 40 ------------YQKMLVTDLEYALDKKVEQDLWNHAFKNQI---TTLQGQAKNRANPNR 84
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
+ V + + + ++++ F + C + + L + +
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
++ + H +L + +A YY PY L +
Sbjct: 145 SSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYR---HAAQLVPSNGQPYNQLAILA 196
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
GD + + + + + + L + + K +A
Sbjct: 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE----VKTKWGVSDFIKA 252
Query: 413 FIDL-GELLISSDTGAALDAFKTARTLLKKAGEEVPIE-------VLNNIGVIHFEKGEF 464
FI G + +S + K+ + + N+ +H +
Sbjct: 253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFS 312
Query: 465 ESA 467
Sbjct: 313 NET 315
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (159), Expect = 1e-11
Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 14/222 (6%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274
++ Q ++A L + ++ + A + + Q+ A+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ------DLYQKMLVTDLEYALDKKVE 57
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
+ + L A N ++ + + G Y +
Sbjct: 58 Q-DLWNHAFKNQITTLQGQAKNRANPNRSEVQANL-SLFLEAASGFYTQLLQELC---TV 112
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
N LG + K + + L LG I Q +
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQ 170
Query: 395 AQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTA 435
A+ R AA++ P + Q + L L S D + + +
Sbjct: 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 3e-07
Identities = 34/339 (10%), Positives = 91/339 (26%), Gaps = 38/339 (11%)
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453
++ + LR+A + + + E+ S A D ++ + + +E
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR--QALQDLYQKMLVTDLEYALDKKVEQD-- 59
Query: 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 513
F++ + + + ++ V + L+ +
Sbjct: 60 -----LWNHAFKNQITTLQGQ------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQE 108
Query: 514 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573
+ L + + T A + L IA+ RN
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRN 166
Query: 574 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
+ A ++ + L L D + + + ++
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS------------IA 214
Query: 634 LGNWNYFAALRN-----EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688
+ + AA N K + + + + ++ ++Y +
Sbjct: 215 VKF-PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY--LSKSLEKLSP 271
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727
+ + + + + A S + V INL ++ +
Sbjct: 272 LREKLEEQFKELLFQKAFNSQQLVHVTV-INLFQLHHLR 309
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ LG I KQ + + + V G + + + QA S ++
Sbjct: 123 SSQLGIISNKQTHTSA----IVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ N A + ++G + ++ +Y R++ V P A
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.5 bits (179), Expect = 2e-14
Identities = 31/260 (11%), Positives = 67/260 (25%), Gaps = 13/260 (5%)
Query: 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKAR 217
R+ + L + E + L F + L+V+P G L R +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
+ R L+ D N + QA + + + +Y +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCL 187
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ L ++ +++ +Y + +
Sbjct: 188 LPQLHPQ-------PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH---RWLLG 237
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
E +F + L + +++ T+ L L ++ +
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 398 LLRKAAKIDPRDAQAFIDLG 417
+DP A DL
Sbjct: 298 YFSTLKAVDPMRAAYLDDLR 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 2e-12
Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 19/316 (6%)
Query: 117 YNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Y+K + + + + +G L +G++ A F+ ++ D ++ A +
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +R L++ P A+ + +A + + L+ P
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAH 122
Query: 233 ALVALAV-----MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
+ + G E++ A+ L+ + ++
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF-LAAVRLDPTSIDPDVQCGLGVL 181
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 343
L+ + N ++ G G +V + E +I
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----HIYVQLGQIEKAQELL 399
Y LG + LG R A+ +F + L + + G +I+ L
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 400 RKAAKIDPRDAQAFID 415
D RD +
Sbjct: 302 DAYGAADARDLSTLLT 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 1e-10
Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 23/291 (7%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
GL R + G L A F+ A+Q DP+++EA L + + + ++R E+
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ---ELLAISALRRCLEL 82
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP------------TKSHSYYNL 311
P AL LA F ++ L T +
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
S S + + ++A+V ++ GLG + G++ A+ F L +
Sbjct: 143 LGSLLSDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALD 430
P++ LG Q E+A R+A ++ P ++ +LG I+ A++
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 431 AFKTARTLLKKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
F A + +K+ + + + + G+ ++ + L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 46/294 (15%), Positives = 82/294 (27%), Gaps = 24/294 (8%)
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y+K + E P + G +L+ GD +A+ FE ++ P + E
Sbjct: 3 TYDKGYQF------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 56
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG-----------AA 428
+ LG + Q A LR+ ++ P + A + L +
Sbjct: 57 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116
Query: 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488
A+ T ++ + I F + F A+ D +
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
Query: 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548
V+ + N L L N + E + Y
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------Y 229
Query: 549 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
R L Y+ + L + ++E EAL + K G +
Sbjct: 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 639
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 640 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 697
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 758 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.6 bits (149), Expect = 8e-11
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 409 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468
L L+ ++ K GE + + ++E
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119
Query: 469 QSFKDAL 475
+
Sbjct: 120 ELALQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/130 (11%), Positives = 36/130 (27%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + +A + + S +LL G+ E+A ++ + +P +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
D + A + + L + + + +L E
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 233 ALVALAVMDL 242
+ D+
Sbjct: 135 LANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ L++G+++QA ++A + + G + + E +++++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L + + A+ A + + E + + + + + + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS--- 119
Query: 255 EKMQRAFEIYPYCAMALNYLA 275
E + E+ N +
Sbjct: 120 ELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.0 bits (111), Expect = 5e-06
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 7/138 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + GD+E+A M S+K P ++ L + +
Sbjct: 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-YLPGASQLRHLVKAAQARKDF 83
Query: 362 LTNFEKVLEI-YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-EL 419
+ + ++ + E+ EL + ++ D
Sbjct: 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 143
Query: 420 LISSD--TGAALDAFKTA 435
+ D G ++ F TA
Sbjct: 144 VRDIDDRLGGYIELFSTA 161
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.5 bits (102), Expect = 6e-05
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
++ S+G ++A + ++K P + ++ GDF A + +++
Sbjct: 3 WKNALSEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALD 430
+P+ L H+ + + A + + + L
Sbjct: 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS------MVSQ 113
Query: 431 AFKTARTLLKKAGEEVP 447
++ L + E
Sbjct: 114 DYEQVSELALQIEELRQ 130
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 2e-04
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.4 bits (94), Expect = 7e-04
Identities = 10/138 (7%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+++ +E + A + P A + G ++ ++ + P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGAS 68
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L + + + + + D+ ++
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTK--SLVSFNLSMVSQDYEQVSELALQIE 126
Query: 370 EIYPDNCETLKALGHIYV 387
E+ + V
Sbjct: 127 ELRQEKGFLANDTSFSDV 144
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 7/210 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ LG AR F +AL + P+ E L + QA E E
Sbjct: 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLE 99
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ P A ++ G+ L + P L + + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ K + + + LG + + + + ET L
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYL 215
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
G Y+ LG ++ A L + A + +
Sbjct: 216 GKYYLSLGDLDSATALFKLAVANNVHNFVE 245
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.4 bits (116), Expect = 9e-07
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 8/249 (3%)
Query: 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + D + L + + + G + + + +AL + P P
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY- 76
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G+ + G A +AF L+LDP L A + Q
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNY-------AHLNRGIALYYGGRDKLAQDDLL 129
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + + + Q +Q E + + + + +
Sbjct: 130 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 189
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + LG+ L LGD SA F+ + N +
Sbjct: 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
Query: 383 GHIYVQLGQ 391
LGQ
Sbjct: 250 LLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 33/250 (13%), Positives = 63/250 (25%), Gaps = 19/250 (7%)
Query: 361 ALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
L E++L + + L G +Y LG A+ +A I P + F L
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
G L + A + L N G+ + G + A
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAH----LNRGIALYYGGRDKLAQDDLLAFYQ 133
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536
D + + + + Q + + ++ +
Sbjct: 134 -------DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186
Query: 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----Y 592
+ + + L + +L + L A+ N +
Sbjct: 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246
Query: 593 PNALSMLGDL 602
AL L L
Sbjct: 247 RYALLELSLL 256
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 61.5 bits (147), Expect = 2e-10
Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 33/321 (10%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 188
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 189 LQVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--------ENVEALV 235
Q+ + + G L A + ++A QL + +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE------Q 289
A + Y + L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGL 348
L H S++ + GD A + + K E H + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 403 AKIDPR--DAQAFIDLGELLI 421
K+ R F+ GE +
Sbjct: 318 LKLANRTGFISHFVIEGEAMA 338
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 21/285 (7%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 574
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 575 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 626
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 747 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787
+ LL L + +++A + D ++ LL A+ LA +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 3e-08
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 28/169 (16%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + PH I + +G + L + A F
Sbjct: 7 SLWNEGVLAADKKDWKGALDAF----SAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 60
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + G +Y Q + + A + L++A +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-------------- 106
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L + EVL NI ++ +K E++ A + A
Sbjct: 107 --------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 5e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + + A + IN+ Y+ G + + + A
Sbjct: 33 DPHSRICFNIGCMYTILKNMTE---AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 150 KSEPRHSKID 159
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A ++ + G + + +A AF + D+ A
Sbjct: 17 DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 73
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQ---------------VHPSCPGAIRLGIGLCRYKL 210
+ + + +Y +++ K AL + I K
Sbjct: 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ KA + A + E + + A+ +
Sbjct: 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 5e-06
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ L + +++ DY L+ +++ + + L + GD AL
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+K+LE+ P++ L + + +
Sbjct: 68 LTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 398 LLRKAAKIDPRDAQAFIDLGEL 419
L +K ++DP +A +L
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (110), Expect = 7e-06
Identities = 31/271 (11%), Positives = 69/271 (25%), Gaps = 39/271 (14%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------D 227
+ ++ ++ + +A ++ +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQAATIY---------------RLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHF 285
E V + +E + F N+ H
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 286 LVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY----MASVKEIN 336
+ + LA + + A G Y +A Y +S+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQ--L 389
+ G QL D +A ++ P+ LK+L +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Q+ + + ++D + E +
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 0.001
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 607
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 725
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 726 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 781 PSNYTL 786
T+
Sbjct: 271 KWKITI 276
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 0.002
Identities = 21/187 (11%), Positives = 55/187 (29%), Gaps = 19/187 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCET-------LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
E ++I+ + + + L KA + A + +D +
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159
Query: 418 ELLISSDTGAALDAFKTARTLLKKAGEEVPI---------EVLNNIGVIHFEKGEFESAH 468
+ +D A + A + K + + G+ + +A
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 469 QSFKDAL 475
++ ++
Sbjct: 220 RTLQEGQ 226
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 9e-06
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ A Y DYE A +Y +++ + L+ + AL
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALG 65
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ + +E+ + + LG+ A K+ P D A + E
Sbjct: 66 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.3 bits (106), Expect = 9e-06
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
Y +A Y + I + Y LK+ AL +
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYG---RAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
+ LE+ + + LG +++ ++A L++A + F D +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 7/189 (3%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G + + +A + RA+ +P A+ L+ + + + +RA E+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALEL 67
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A +L + + A ++ + ++ + S ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKR 124
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + ++ H ++ + + +L + + E I
Sbjct: 125 WNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 384 HIYVQLGQI 392
+ ++
Sbjct: 184 KYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 11/199 (5%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ LK G+ + +A +A +P A + + + A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
L ++ +G E ++ A + + A L + + D
Sbjct: 65 LELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYS-------LAKEQRLNFGDDI 113
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
S L+ + ++ E H E + A ++ + +
Sbjct: 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Query: 557 DYVDAYLRLAAIAKARNNL 575
+ + L
Sbjct: 174 QQACIEAKHDKYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.0 bits (87), Expect = 0.003
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
+ A Y +A + + + L + EQA + + LE D +V A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
+ Y +++ +RA + I L A++ +++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI------PSALRIAKKKRWNSIE 129
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ E+ + + L A E + +E+ QR E +
Sbjct: 130 ERRIHQESELHSYLTRLIAAER---ERELEECQRNHEGHE 166
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
+ S D K + + + F Y D R + E++L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 370 EI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + L +L + EKA + +R + +P++ QA
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLG---QACVEFNRGRYSDSLEFYKRALQVHPS 194
L++ ++ + F+ A + + + L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 195 CPGAIRL-GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
+ + + Y+L + KA + + LQ +P+N +A ++D
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ + N E+ ++ A + Y D + G+ +
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ E + L +L ++ AL +L+ P N + + I +
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 391 Q 391
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 2/92 (2%)
Query: 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267
+ L K + FQ + A ++ IRKG+ ++
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69
Query: 268 AM--ALNYLANHFFFTGQHFLVEQLTETALAV 297
+ YLA + ++ + L
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGE 444
V + + K ++ + + L+ LL K +
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
E + + + V ++ E+E A + + L
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744
L + F + A S S Q + + + + + L K
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQF--EYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ YLA +Y ++++ K + + P N
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 185 YKRALQVHPSCP-------------GAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN 230
Y++ L V P + G +A ++RA+ L +N
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+ A A + + + ++ +I P +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMI 156
Query: 291 TETALAVTNHGPTKSHSYYNLAR-SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A T+ H Y A Y+ D A + +K+ E++ Y
Sbjct: 157 FKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY- 212
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 405
L + + FE+VL E + ++ G + ++ ++
Sbjct: 213 --LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
Query: 406 DPRDAQA 412
+ +
Sbjct: 271 FREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 19/255 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL-LGQACVEFNRGRYSDSLEFYKRAL 189
KG + AK ++A++ ++ + L A E +R +Y Y R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ P + + + + R F++A + V A+M+ ++
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--D 184
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + + Y + ++ + L E L + P KS +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 310 NLARSYHSK-GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++ S GD S+ ++ K F + G + L + K
Sbjct: 245 ARFLAFESNIGDLA--------SILKVEKRRFTAFR-------EEYEGKETALLVDRYKF 289
Query: 369 LEIYPDNCETLKALG 383
+++YP + LKALG
Sbjct: 290 MDLYPCSASELKALG 304
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
A + +L + + ++ NLA Y +Y K K
Sbjct: 34 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK---AVECCDKA 90
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
Query: 395 AQE-----LLRKAAKID 406
+ +K A+ D
Sbjct: 151 RDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQV 351
++ Y G Y +A + Y V + + + + L
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LKL ++ A+ +K L + N + L G + + + E A+ K +++P++
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 412 AFIDLGELL 420
A + +
Sbjct: 134 ARLQIFMCQ 142
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 5e-05
Identities = 25/278 (8%), Positives = 75/278 (26%), Gaps = 12/278 (4%)
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS--SDTG 426
+ + + + + E+A +L R A +++ + + LL S D
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
++ K +V ++ V+ + + D +
Sbjct: 96 EEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIAD--ILNQDAKNYHA 148
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
+ + + + + D + + + V+ N ++
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL--EL 604
+I + + + ++ L+ + P ++ L D+ ++
Sbjct: 209 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268
Query: 605 KNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 641
+ ++ A + T+ W Y
Sbjct: 269 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGA------IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFR 359
++ L + K D++ A +Y + + + Y+ G
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ + E Y + +G+ Y + + + A K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
F +D ++V+ ++ ++ + + A + Y +
Sbjct: 9 FPEDADVDLKDVDKILLIS---EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE 65
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L P N+ D++ + ++ +
Sbjct: 66 DADGAKL--------------QPVALSCVLNIGACKLKMSDWQG---AVDSCLEALEIDP 108
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
Y Q L ++ AL + +K EI P++ L + ++ + +
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 6e-04
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------- 344
+ L + S N+ ++ ++E A Y ++ +
Sbjct: 14 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73
Query: 345 ------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
+G +LK+ D++ A+ + + LEI P N + L + L + ++A
Sbjct: 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133
Query: 399 LRKAAKIDPRDAQAFIDLGELL 420
L+KA +I P D +L ++
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVK 155
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-------------IFPYYGLGQ 350
+ + K + +A + Y ++ E+ I L
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 411 QAFIDLGELL 420
+
Sbjct: 136 DIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.8 bits (89), Expect = 0.001
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335
+ F+ + + + + + NLA Y+ DY KA + +K
Sbjct: 38 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97
Query: 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ ++ + G A N K + P+N + + +L + K
Sbjct: 98 KNNVKALYKLG---VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 8e-04
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
KG L+ G ++ A + ++ D N ++ +G Y + E + + + P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
L + +A++ ++ L+ + N + L
Sbjct: 69 DWGK-GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.001
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ + S G+ + A Y + I Y K GD++ A
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYS---EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ K +++ PD + L + E+A+ + K + + Q L +
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1088 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.2 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.19 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.19 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.08 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.7 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.11 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.85 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.78 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.61 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.1 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.47 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-33 Score=317.94 Aligned_cols=330 Identities=22% Similarity=0.300 Sum_probs=217.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcC
Q 001392 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1088)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1088)
+.+|..+++.|+|++|+..|+++++.+|+++.++..+|.+++..|++++|+..|++++..+|++ +.++..+|.++..+|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhhhhc
Confidence 4578888889999999999999999999999999999999999999999999999999999988 677888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001392 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1088)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1088)
++++|+..+..++..+|.........+........ ...+...........+.........+......+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 99999999999998888888888777777776665 555666666666666666666655566665566655555555
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHh
Q 001392 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1088)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1088)
...+... |..+.++..+|..+...|+++.|...+.+++. ..|....++..+|.++...|++++|+..|.++...
T Consensus 159 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 159 LKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHhhccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHH---hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 5555332 44445555555555555555555555555554 33445555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 001392 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEV 450 (1088)
Q Consensus 372 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 450 (1088)
.|.....+..+|.++...|++++|+..|+++++++|+++.++..+|.++ ..|++.+|+..+..+....+. ...+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 307 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADS 307 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHH
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-----cchh
Confidence 5555555555555555555555555555555555555555555555555 555555555555544443222 2444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 451 LNNIGVIHFEKGEFESAHQSFKDALG 476 (1088)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~l~~al~ 476 (1088)
+..+|.++...|++++|+.+|++++.
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-33 Score=321.24 Aligned_cols=383 Identities=20% Similarity=0.254 Sum_probs=332.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001392 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (1088)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~ 424 (1088)
+.+|..+++.|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|+++++.+|+++.++..+|.++ ..|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 467778888888888888888888888888888888888888888888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001392 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1088)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1088)
+++|+..+..+....+. ........+......+.+..+.........
T Consensus 83 ~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 129 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------
T ss_pred ccccccccccccccccc-----cccccccccccccccccccccccccccccc----------------------------
Confidence 88888888877776433 355555566666666666666655555444
Q ss_pred hhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1088)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 584 (1088)
..+.........+......+....+...+...+...|+++.++..+|.++...|++++|..++.+
T Consensus 130 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 194 (388)
T d1w3ba_ 130 ---------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ---------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------cccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHH
Confidence 23345567777788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHH
Q 001392 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (1088)
Q Consensus 585 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (1088)
++..+|+++.++..+|.++...|++++|+..|.++....+. ....+..+|.+ |... |++++|+..|
T Consensus 195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~ 260 (388)
T d1w3ba_ 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTY 260 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHH
T ss_pred HHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHH-HHHC------------CCHHHHHHHH
Confidence 99999999999999999999999999999999999988776 66777888988 8888 9999999999
Q ss_pred HHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Q 001392 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1088)
Q Consensus 665 ~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 744 (1088)
+++++.+|+++.++..+|.++...|++.+|+..|..+....| ..+.++..+|.++...|++++|+..|+++++.
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~- 334 (388)
T d1w3ba_ 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-----ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999987 78899999999999999999999999999987
Q ss_pred cCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 745 ~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
.|.++.+++.+|.+|...|++++|+.+|+++++++|+++.+++++|.+|.++
T Consensus 335 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5677999999999999999999999999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.8e-23 Score=225.91 Aligned_cols=294 Identities=15% Similarity=0.149 Sum_probs=197.7
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001392 117 YNKASRIDMH----EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1088)
Q Consensus 117 ~~~a~~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1088)
|+++....+. +...++.+|..++..|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|.+++.++
T Consensus 4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 83 (323)
T d1fcha_ 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83 (323)
T ss_dssp HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence 4445444433 335578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001392 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1088)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1088)
|++ ..+++.+|.++..+|++++|+..+.+++...|.....+..........+ .
T Consensus 84 p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---- 136 (323)
T d1fcha_ 84 PDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG----------------------L---- 136 (323)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------------------
T ss_pred ccc-ccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcc----------------------c----
Confidence 998 7789999999999999999999999999998875432211111000000 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHH
Q 001392 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1088)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1088)
.........+...+.+.+|...|.+++...+. .....++..+|.++
T Consensus 137 ---------------------------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 137 ---------------------------------GPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLF 182 (323)
T ss_dssp -------------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHH
T ss_pred ---------------------------------ccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc-ccccccchhhHHHH
Confidence 00000011112233445566666666553221 22344566667777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001392 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (1088)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~ 431 (1088)
...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+..|+++++++|+++.+++.+|.++ ..|++++|+..
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777 77777777777
Q ss_pred HHHHHHHHHhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001392 432 FKTARTLLKKAGEE------VPIEVLNNIGVIHFEKGEFESAHQSF 471 (1088)
Q Consensus 432 ~~~a~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~l 471 (1088)
|.+++.+.|+.... ....++..++.++...|+.+.+....
T Consensus 263 ~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 263 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777766653211 11345566666666666665444333
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.7e-23 Score=225.96 Aligned_cols=262 Identities=15% Similarity=0.116 Sum_probs=217.7
Q ss_pred chHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhh
Q 001392 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1088)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~ 603 (1088)
+....+..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|.+++.++|+++.++..+|.+|
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHH-HHHhhhHHHHHHhhhhhc-ChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHh
Q 001392 604 LKNDDWVKAKETFRAASDATDGKDSYA-TLSLGNWNYFAALRNEKR-APKLEATHLEKAKELYTRVIVQHTS--NLYAAN 679 (1088)
Q Consensus 604 ~~~g~~~~A~~~~~~al~~~~~~d~~a-~~~lg~~~y~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~ 679 (1088)
...|++.+|+..|.+++...|...... ....... .......... ......+.+.+|...|.+++..+|. ++.++.
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhh-hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 999999999999999998877622110 0000000 0000000000 0011238899999999999999987 567889
Q ss_pred hHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001392 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 759 (1088)
Q Consensus 680 ~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~ 759 (1088)
.+|.++...|++++|+..|++++...| +++.+|+++|.+|..+|++++|+..|+++++. .|.++.+++.+|.+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhccccccccccc-----ccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 999999999999999999999999998 78999999999999999999999999999998 67789999999999
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHH
Q 001392 760 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1088)
Q Consensus 760 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 793 (1088)
|...|++++|+..|++++.++|++....+.++.+
T Consensus 250 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHH
Confidence 9999999999999999999999987766655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.8e-19 Score=196.19 Aligned_cols=240 Identities=9% Similarity=-0.005 Sum_probs=213.0
Q ss_pred CCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHCCCChhHHH
Q 001392 519 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALS 597 (1088)
Q Consensus 519 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~ 597 (1088)
...|....++.++|.++...+.+++|+..+.+++.++|.+..+|..+|.++...| ++++|+.++++++.++|++..+|.
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~ 116 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3567788899999999999999999999999999999999999999999999887 589999999999999999999999
Q ss_pred hhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 001392 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1088)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 677 (1088)
.+|.++...|++++|+..|.+++...|. +..++..+|.+ +... +++++|+..|+++++++|.+..+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~a 182 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNSV 182 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHHH
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHH-HHHH------------HhhHHHHHHHHHHHHHCCccHHH
Confidence 9999999999999999999999999988 78899999999 9888 99999999999999999999999
Q ss_pred HhhHHHHHHhcCC------chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHH
Q 001392 678 ANGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (1088)
Q Consensus 678 ~~~la~~l~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~ 751 (1088)
|+++|.++...+. +.+|+..+.+++...| .+..+|++++.++... ...++...++.++...+...++.
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~ 256 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPY 256 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-----CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHH
Confidence 9999999988776 4789999999999998 7899999999987654 46889999999999877777788
Q ss_pred HHHHHHHHHHhh--ccHHHHHHHHHHHHH
Q 001392 752 ILLYLARTHYEA--EQWQDCKKSLLRAIH 778 (1088)
Q Consensus 752 ~l~~La~~~~~~--g~~~~A~~~l~~al~ 778 (1088)
++..++.+|... +....+...+.+++.
T Consensus 257 ~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 257 LIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888888887653 333344444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.2e-18 Score=187.44 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADR 159 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p 159 (1088)
+-..+++.++.++...++.+ +|+.+|++++.++|.+..+|..+|.++...| ++++|+..|++++..+|
T Consensus 41 ~~~~a~~~~~~~~~~~e~~~-----------~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p 109 (315)
T d2h6fa1 41 KFRDVYDYFRAVLQRDERSE-----------RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCCH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCchH-----------HHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 45667888899988887776 9999999999999999999999999999987 59999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
++..+|..+|.++...|++++|+..|.+++.++|.+ ..++..+|.++..+|++++|+..|.++++++|.+..+|..+|.
T Consensus 110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~ 188 (315)
T d2h6fa1 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188 (315)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHhhch---HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 001392 240 MDLQANE---AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1088)
Q Consensus 240 ~~~~~~~---~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~ 316 (1088)
++...+. .+.+.+|+..+.+++.++|.+..+++.++.++... ...++...+..++...+. +..+.++..++.+|.
T Consensus 189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 189 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS-HSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT-CCCHHHHHHHHHHHH
T ss_pred HHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC-cCCHHHHHHHHHHHH
Confidence 9877554 44578999999999999999999999998876544 467788888888765433 234455555555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=6.9e-20 Score=202.43 Aligned_cols=263 Identities=9% Similarity=-0.036 Sum_probs=221.1
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--h
Q 001392 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (1088)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~ 178 (1088)
++|+.++.+++..+|+++.+|..++.++...+ .+.+|+.+|+.++..+|+++.+|+.+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 48999999999999999999988887765543 47899999999999999999999999888877764 7
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHH
Q 001392 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1088)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1088)
.+|+..+.+++..+|......+..+|.++...|.++.|+..+++++..+|.+..+|..+|.++...|+ +.+|+..+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCS
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 89999999999999988555566788888889999999999999999999999999999999988888 666766666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 001392 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1088)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1088)
+++...|.... ....+...+..+++...|.+++. ..
T Consensus 203 ~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~a~~~~~~~l~---~~ 238 (334)
T d1dcea1 203 LPENVLLKELE-----------------------------------------LVQNAFFTDPNDQSAWFYHRWLL---GR 238 (334)
T ss_dssp SCHHHHHHHHH-----------------------------------------HHHHHHHHCSSCSHHHHHHHHHH---SC
T ss_pred HhHHhHHHHHH-----------------------------------------HHHHHHHhcchhHHHHHHHHHHH---hC
Confidence 66555443321 12223344566677888888877 55
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001392 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1088)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~ 418 (1088)
|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.+|...|++++|+.+|+++++++|.....|..|+.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 67777788999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HH
Q 001392 419 LL 420 (1088)
Q Consensus 419 l~ 420 (1088)
.+
T Consensus 319 ~~ 320 (334)
T d1dcea1 319 KF 320 (334)
T ss_dssp HH
T ss_pred HH
Confidence 77
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.2e-18 Score=192.40 Aligned_cols=275 Identities=8% Similarity=-0.104 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1088)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1088)
.++|+.++.+++..+|++..+|+..+.++.. +...+..+...|.+.+|+.+|+
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~---------------------------l~~~~~~~~~~~~~~~al~~~~ 97 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQH---------------------------LETEKSPEESAALVKAELGFLE 97 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------------HHTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---------------------------HhhhcchHHHHHHHHHHHHHHH
Confidence 3567777777777777777666665554322 2222334566677889999999
Q ss_pred HHHHhcCCCCCchhhHhhHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 001392 330 ASVKEINKPHEFIFPYYGLGQVQLKLGD--FRSALTNFEKVLEIYPDNCETL-KALGHIYVQLGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~k~l~~~ 406 (1088)
+++. ..|.+..+++.+|.++...+. +++|+..+.+++..+|.+..++ ..+|.++...+.++.|+..+++++..+
T Consensus 98 ~~l~---~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~ 174 (334)
T d1dcea1 98 SCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (334)
T ss_dssp HHHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHH---hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 9998 678888899999988888764 8999999999999999988876 567788999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001392 407 PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485 (1088)
Q Consensus 407 p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~ 485 (1088)
|.+..+|..+|.++ ..|++++|...+.+++...+.. . .....+...+..+++...|.+++.
T Consensus 175 p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~----~~~~~~~~l~~~~~a~~~~~~~l~--------- 236 (334)
T d1dcea1 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----L----ELVQNAFFTDPNDQSAWFYHRWLL--------- 236 (334)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----H----HHHHHHHHHCSSCSHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----H----HHHHHHHHhcchhHHHHHHHHHHH---------
Confidence 99999999999999 9999999998888888876652 2 233445566778888898988887
Q ss_pred cccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHH
Q 001392 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 565 (1088)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 565 (1088)
..|.....+..++.++...|++.+|+..+.+++..+|.+..++..+
T Consensus 237 ----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 282 (334)
T d1dcea1 237 ----------------------------------GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282 (334)
T ss_dssp ----------------------------------SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------------hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 4566677788889999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcc
Q 001392 566 AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 566 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~ 606 (1088)
|.++...|++++|+.+|++++.++|.+...|..++..+...
T Consensus 283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999998888876643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.7e-16 Score=167.66 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001392 109 HFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1088)
Q Consensus 109 ~~~~A~~~~~~a~~~~p----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1088)
.++.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34577777888876533 45568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhC
Q 001392 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1088)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1088)
|++++.++|++ +.+++.+|.++..+|++++|+..|+++++.+|++......++..+...+. ...+...........
T Consensus 94 ~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE---KQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHSC
T ss_pred hhHHHHHHhhh-hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh---HHHHHHHHHHhhccc
Confidence 99999999999 77899999999999999999999999999999999888888877777665 334444444444444
Q ss_pred CC
Q 001392 265 PY 266 (1088)
Q Consensus 265 p~ 266 (1088)
+.
T Consensus 170 ~~ 171 (259)
T d1xnfa_ 170 KE 171 (259)
T ss_dssp CC
T ss_pred hh
Confidence 33
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2.9e-17 Score=173.79 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 142 GEVEQASSAFKIVLEADR----DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 142 g~~~~A~~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
++.+.|+..+.+++...+ ....+++.+|.+|...|+|++|+..|++++.++|++ +.+++.+|.++..+|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-HHHHhhhchHHHHHHHHHHhh
Confidence 345677777788776533 345689999999999999999999999999999999 778999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001392 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1088)
..|++++.++|+++.++..+|.++...|+ +.+|+..|.++++.+|.+......++..+...+....+..+......
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhh---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999998 99999999999999999888777777766666655555444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.2e-15 Score=169.03 Aligned_cols=309 Identities=14% Similarity=0.047 Sum_probs=192.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----h
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----P 196 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~ 196 (1088)
.+.....+|.+++..|++++|+.+|++++...|.+ ..++..+|.+++..|++++|+..|++++...|.. .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 34566667888888888888888888888888876 3467778888888888888888888888765433 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
...+..++.++...|++..|...+.+++.+.+. ...++..+|.++...|+ +..+...+.+++...+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHhhhhh
Confidence 334567778888888888888888877764321 11234445555555555 5555555555555443211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC----Cchhh
Q 001392 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH----EFIFP 344 (1088)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~ 344 (1088)
......++...+..+...+.+..+...+..+........ ....+
T Consensus 168 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 168 --------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp --------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred --------------------------------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 112234455556666666666666666666655332211 12234
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 001392 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFI 414 (1088)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~k~l~~------~p~~~~~~~ 414 (1088)
+..++.++...|+++.|...+.+++...|.+ ...+..+|.++...|++++|+..+++++.. .|....++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 5556666666777777777776666554432 345556677777777777777777766643 244456667
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q 001392 415 DLGELL-ISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQS 470 (1088)
Q Consensus 415 ~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 470 (1088)
.+|.++ ..|++++|+..+++++.+.+..+... ....+..+...+...+..+++...
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 777777 77777777777777777665543321 123334444455556666665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=4.7e-15 Score=164.16 Aligned_cols=284 Identities=14% Similarity=0.019 Sum_probs=208.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-C
Q 001392 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-P 447 (1088)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~-----~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 447 (1088)
.+++....|.++...|++++|+.+|++++...|.+ ..++..+|.++ ..|++++|+..|.+++...+..+... .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 34566667777778888888888888888777765 34667777777 88888888888888887766643221 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
...+..++.++...|++..|...+..++...+... ....+....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----------------------------------~~~~~~~~~~ 135 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-----------------------------------LEQLPMHEFL 135 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------------------------------CTTSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc-----------------------------------cchhhHHHHH
Confidence 45678889999999999999999999887432100 0023345567
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC-------hhH
Q 001392 528 LFNLARLLEQIHDTVAASVLYRLILFKYQD-----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 595 (1088)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~ 595 (1088)
+..+|.++...|+++.|...+..++...+. ...++..++.++...+.+..+...+.++....+.. ..+
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 788999999999999999999999986553 36678888999999999999999999988875432 236
Q ss_pred HHhhhhhhhcccchHHHHHHHHHhhhcCCCCCh---HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhc--
Q 001392 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDS---YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-- 670 (1088)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~---~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 670 (1088)
+..++.++...|+++.|...+.+++...+.... ..+..+|.+ |... |++++|...|++++..
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~ 282 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA-QILL------------GEFEPAEIVLEELNENAR 282 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999887655332 344456666 6666 7777777777776632
Q ss_pred ----CCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001392 671 ----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1088)
Q Consensus 671 ----~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p 706 (1088)
.|....++..+|.++...|++++|+..|++++...+
T Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 283 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 244455666666666666666666666666666543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.4e-13 Score=122.80 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
-+...|..++..|+|++|+.+|.+++..+|+++.+|..+|.++...|++.+|+..|.+++.++|++ +.+++.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 210 LGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
+|++++|+..|+++++++|+++.++..++.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999999999988888764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.7e-12 Score=138.49 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK--------------GEVEQASSAFKIVLEA-DRDNVPALLGQACV 171 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~a~~~la~~ 171 (1088)
......+..+|++|+...|.++..|+..+..+... +.+++|..+|++++.. .|.+...|...+.+
T Consensus 29 ~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 29 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556788899999999999999999887765433 3468899999999975 78888999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hchHHhH
Q 001392 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGI 250 (1088)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~ 250 (1088)
+...|+++.|..+|++++...|.+...++..++.+....|+++.|+.+|.+++...|.+...+...+.+... .|+ .
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~---~ 185 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---K 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---H
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC---H
Confidence 999999999999999999999988666789999999999999999999999999999999999888876544 466 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHH
Q 001392 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYM 329 (1088)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1088)
+.|..+|++++..+|.++..+..++.++...|+++.|..+|++++...+.+|. ...+|..........|+.+.+..+++
T Consensus 186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999987655543 34567777777778899999999999
Q ss_pred HHHHhcCCC
Q 001392 330 ASVKEINKP 338 (1088)
Q Consensus 330 ~al~~~~~~ 338 (1088)
++.+.++..
T Consensus 266 r~~~~~~~~ 274 (308)
T d2onda1 266 RRFTAFREE 274 (308)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHCccc
Confidence 888765533
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.7e-12 Score=140.17 Aligned_cols=226 Identities=9% Similarity=0.024 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHH-CCCChhHHHhhhhhhhcc
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELKN 606 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~l~~al~~-~p~~~~~~~~l~~~~~~~ 606 (1088)
..+..+|++++...|.++..|+..+..+... +..++|..+|++++.. .|.+..+|..++.++...
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4566789999999999999998888765433 3457889999999975 788888999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Q 001392 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1088)
Q Consensus 607 g~~~~A~~~~~~al~~~~~~d~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~ 686 (1088)
|+++.|..+|++++...|......+...+.+ .... +.++.|..+|.+++...|.+...+...+....
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999998887555677777777 6666 88999999999999999999998888887654
Q ss_pred -hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhh
Q 001392 687 -EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 763 (1088)
Q Consensus 687 -~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~La~~~~~~ 763 (1088)
..|+.+.|..+|++++...| +++..|..++..+...|+++.|..+|+++++..+.++. ..++......-...
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~ 254 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence 46899999999999999998 78999999999999999999999999999998655443 55777777777788
Q ss_pred ccHHHHHHHHHHHHHhCCCChh
Q 001392 764 EQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 764 g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
|+...+.++++++.++.|....
T Consensus 255 G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 255 GDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHCccccc
Confidence 9999999999999999997754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.3e-14 Score=164.39 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhh
Q 001392 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1088)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 621 (1088)
-+|+++|++++.+.|+.+++++.+|.++..+|++.+| |++++..+|+....+...+.+. ...+..++..++....
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999876 8899999987666554333322 2235667788887776
Q ss_pred cCCCCCh--HHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHH
Q 001392 622 ATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 699 (1088)
Q Consensus 622 ~~~~~d~--~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~ 699 (1088)
.....+. .....++.+ +... +.|..|+..|.+++..+|.+..++.++|.++...|+...|+..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l-~~a~------------~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFL-EAAS------------GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp CSSCTTTTHHHHHHHHHH-HHHH------------HHHHHHHHHHTC-------------------------------CC
T ss_pred cccCccHHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 5433222 222223333 4444 889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001392 700 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1088)
Q Consensus 700 ~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~ 779 (1088)
+++...| ..+++++|.++..+|++++|+.+|++++.. .|.+..+++.||.++...|++.+|+.+|.+++.+
T Consensus 145 ~al~~~~-------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 145 SSCSYIC-------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHhCCCH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9988764 578999999999999999999999999999 6777899999999999999999999999999999
Q ss_pred CCCChhHHhHHHHHHHHHH
Q 001392 780 APSNYTLRFDAGVAMQKFS 798 (1088)
Q Consensus 780 ~p~~~~~~~nla~~~~~~~ 798 (1088)
.|..+.++.||+.++.+..
T Consensus 216 ~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 216 KFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp SBCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999876654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.8e-12 Score=123.16 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1088)
.+...|..|+..|+|++|+.+|.+++..+|+++.+|..+|.+++..|++.+|+..|+++++++|++ ..+++.+|.++..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHHHH
Confidence 356679999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
+|++++|+..|++++.++|++..++..++.+...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~ 124 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 124 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998887766543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.4e-12 Score=116.06 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1088)
.-+...|..++..|+|++|+..|.+++..+|.+ +.++..+|.|+..+|++++|+..|.+++.++|+++.+|+.+|.++.
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 345678999999999999999999999999999 7889999999999999999999999999999999999999999999
Q ss_pred hhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1088)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1088)
..|+ +++|+..|+++++.+|+++.++..++.+.
T Consensus 83 ~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 83 FLNR---FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999 99999999999999999998888877653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.2e-13 Score=159.63 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001392 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1088)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1088)
+|.++|++++.+.|+.+.+++++|.++..+|++.+| |++++..+|+. ...+. ....+++. .+..++..++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~-a~~~~-~e~~Lw~~-~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY-ALDKK-VEQDLWNH-AFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH-HHHHT-HHHHHHHH-HTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh-HHHHh-HHHHHHHH-HHHHHHHHHHHhcc
Confidence 566777777777777777777777777777777665 66677666654 22221 11222221 23445555555554
Q ss_pred hCC--CCHH-HHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001392 226 LDP--ENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1088)
Q Consensus 226 ~~p--~~~~-a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1088)
... +... ....++.+....+. +..++..+.+++.++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~---Y~~ai~~l~~~~~l~~~~~---------------------------------- 120 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGF---YTQLLQELCTVFNVDLPCR---------------------------------- 120 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHH---HHHHHHHHTC-------------------------------------------
T ss_pred cccCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCChhhH----------------------------------
Confidence 322 1111 11222333333333 5555555555555544444
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001392 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1088)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1088)
..+..+|..+...|++..|+..+.+++.. ....++..+|.++...|++++|+.+|.+++.++|++..+++.|
T Consensus 121 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 121 ---VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp -------------------------CCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred ---HHHHHhHHHHHhCCCHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 55666666777777777777777776652 2235677889999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001392 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1088)
Q Consensus 383 a~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~ 420 (1088)
|.++...|+..+|+.+|.+++...|..+.++.+|+.++
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998999999998887
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.2e-12 Score=124.54 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCC
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1088)
..|..++..|+|+.|+..|.++ .|.++.+++.+|.+++..|+|++|+..|+++++++|+. +.+++.+|.|+..+|+
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-hhhHHHHHHHHHhhcc
Confidence 3455555555555555555432 34445555555555555555555555555555555555 4455555555555555
Q ss_pred HHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCC
Q 001392 213 LGKARQAFQRALQLDPEN----------------VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1088)
Q Consensus 213 ~~~A~~~~~~al~~~p~~----------------~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1088)
+++|+..|++++...|.+ ..+++.+|.++...|+ +.+|+..|.+++.+.|.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~---~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 555555555555543322 2344455555555555 55555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=2.5e-12 Score=137.37 Aligned_cols=205 Identities=14% Similarity=0.137 Sum_probs=140.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 001392 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDL 416 (1088)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~------~~~~~~l 416 (1088)
|.+|...|++++|+.+|.+++.+. +....++..+|.+|...|++++|+..|.+++.+.+.. ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 456666677777777777766652 1224567778888888888888888888887765443 5667777
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001392 417 GELL--ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1088)
Q Consensus 417 a~l~--~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 493 (1088)
+.++ ..+++++|+..|.+++.+.+..+.+. ...++.++|.++...|+|++|+.+|++++...+....
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~---------- 193 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL---------- 193 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT----------
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh----------
Confidence 8777 46899999999999998877654322 2467889999999999999999999999875321100
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH-----HHHHHHH
Q 001392 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-----YLRLAAI 568 (1088)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~ 568 (1088)
........++..+.++...|++..|...+.+++..+|....+ ...++.+
T Consensus 194 --------------------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a 247 (290)
T d1qqea_ 194 --------------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (290)
T ss_dssp --------------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred --------------------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 112234567788889999999999999999999988865443 2333333
Q ss_pred HHH--cCChHHHHHHHHHHHHHC
Q 001392 569 AKA--RNNLQLSIELVNEALKVN 589 (1088)
Q Consensus 569 ~~~--~g~~~~A~~~l~~al~~~ 589 (1088)
+.. .+.+.+|+..|.++..++
T Consensus 248 ~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 248 VNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHhcCHHHHHHHHHHHHHHhhcC
Confidence 332 234677777776655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.2e-11 Score=122.37 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=113.5
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001392 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1088)
Q Consensus 89 la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1088)
.|..+...|.+. .|+..|.++ .|.++.+|+.+|.+|+..|++++|+..|+++++.+|+++.+++.+
T Consensus 11 ~g~~~~~~~d~~-----------~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~ 76 (192)
T d1hh8a_ 11 EGVLAADKKDWK-----------GALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76 (192)
T ss_dssp HHHHHHHTTCHH-----------HHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHH-----------HHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 466666666544 999999864 566889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCh---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001392 169 ACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1088)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1088)
|.+++.+|+|++|+..|++++...|.+. ..+++.+|.++..+|++++|...|.+++.+.|..
T Consensus 77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999998765541 3567899999999999999999999999999864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1e-11 Score=119.11 Aligned_cols=126 Identities=15% Similarity=0.200 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1088)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1088)
++...+...|..|+..|++. +|+.+|+++++++|+++.+|+.+|.+++..|++++|+..|.++++.+|+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~-----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~ 76 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 76 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCHH-----------HHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc
Confidence 45566777888888777766 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH--cCCHHHHHH
Q 001392 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK--LGQLGKARQ 218 (1088)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~--~g~~~~A~~ 218 (1088)
++.++..+|.++...|+|++|+..|++++.++|++ +.++..++.|... .+.+++|+.
T Consensus 77 ~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 77 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 6667667666433 333444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=5.9e-12 Score=134.42 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001392 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1088)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1088)
.++|...|..|..+|+|++|+..+.+++..... .+..++-..++..+|.+|..+|... +|+..|++
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~---~~~~~~~a~~~~~~g~~y~~~~~~~-----------~A~~~~~~ 102 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKK---AGNEDEAGNTYVEAYKCFKSGGNSV-----------NAVDSLEN 102 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHhCCcH-----------HHHHHHHH
Confidence 457999999999999999999999998753211 1223355677888899998888766 88888888
Q ss_pred HhhcCCCC------hhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 120 ASRIDMHE------PSTWVGKGQLLLA-KGEVEQASSAFKIVLEADRD------NVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 120 a~~~~p~~------~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
++.+.+.. ..++..+|.+|.. .|++++|+.+|.+++...+. ...++..+|.++...|+|.+|+..|+
T Consensus 103 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~ 182 (290)
T d1qqea_ 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence 88775544 4667788888866 59999999999999876432 24568889999999999999999999
Q ss_pred HHHHhCCCCh------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHHhhchHHhHHHHHH
Q 001392 187 RALQVHPSCP------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-----LVALAVMDLQANEAAGIRKGME 255 (1088)
Q Consensus 187 ~al~~~p~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~~~~~~~~~~~Al~ 255 (1088)
+++...|... ...++..|.|+...|++..|...|+++++++|..... +..+... +..++.+.+.+|+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a-~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA-VNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH-HHTTCTTTHHHHHH
T ss_pred HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 9999987762 2346788999999999999999999999999875543 2223333 23344455889999
Q ss_pred HHHHHHHhCCCCH
Q 001392 256 KMQRAFEIYPYCA 268 (1088)
Q Consensus 256 ~~~~al~~~p~~~ 268 (1088)
.|.++.+++|...
T Consensus 262 ~y~~~~~lD~~~~ 274 (290)
T d1qqea_ 262 EFDNFMRLDKWKI 274 (290)
T ss_dssp HHTTSSCCCHHHH
T ss_pred HHHHHhhcCHHHH
Confidence 9887777765433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=3e-12 Score=128.51 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=96.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1088)
++..+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+|...|+|++|+..|++++.++|++ ..+++.+|.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999 7778999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 207 RYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
|..+|++++|+..|++++.++|++...+
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 9999999999999999999888654433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1e-10 Score=113.06 Aligned_cols=122 Identities=13% Similarity=0.177 Sum_probs=105.6
Q ss_pred HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC----------chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001392 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ----------MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1088)
Q Consensus 676 ~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~----------~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 745 (1088)
..+...|..+...|++++|+..|.+++...|...... ...++.++|.||+++|+|.+|+..++.++..
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-- 91 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 91 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--
Confidence 3455678999999999999999999999876432211 2356889999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHHHH
Q 001392 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1088)
Q Consensus 746 ~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~~~ 799 (1088)
+|.++.+++.+|.+|+..|++++|+..|++++.++|+++.+...++.+......
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999998655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.4e-11 Score=114.05 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---------------PALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+...|..++..|+|++|+..|.+++...|... .++..+|.+|++.|+|.+|+..+++++.++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 3556788899999999999999999988876432 3456677778888888888888888888888
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
++ +.+++.+|.|+..+|++++|+..|+++++++|+++.+...++.+......
T Consensus 94 ~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 94 NN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred cc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77 66677788888888888888888888888888887777777776655443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=7e-12 Score=125.75 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001392 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1088)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1088)
+++..+...|..++..|+|++|+..|.+++.++|.+ +.++..+|.||..+|++++|+..|.++++++|+++.+|+.+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 356778899999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHhhchHHhHHHHHHHHHHHHHhCCCCHHH
Q 001392 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1088)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1088)
++...|+ +++|+..|++++.++|.+...
T Consensus 81 ~~~~l~~---~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 81 CQLEMES---YDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCC---HHHHHHHHHHHHHhCcccHHH
Confidence 9999999 999999999999998865433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.25 E-value=2.8e-11 Score=107.80 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1088)
..++.+|..++..|++.+|+..|++++..+|+++.+|..+|.++...|++.+|+..|++++.++|++ ..+++.+|.+|.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888888888888888888888888 667888888888
Q ss_pred HcCCHHHHHHHHHHHH
Q 001392 209 KLGQLGKARQAFQRAL 224 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al 224 (1088)
.+|++++|+..|+++|
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=8.2e-12 Score=112.60 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=94.2
Q ss_pred hhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHc---cCHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 001392 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ---GNFALAMKMYQNCLRKFYYNTDAQILLY 755 (1088)
Q Consensus 679 ~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~---g~~~~Ai~~~~~al~~~~~~~~~~~l~~ 755 (1088)
..++..+...+++.+|.+.|++++...| .++.+++++|++++.. +++.+|+.+|++++...+.+..+.+++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 4567777888899999999999999887 7889999999999864 4556799999999886332333568899
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 756 La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
||.+|+..|++++|+++|++++.++|++..++.....+.++.
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888775544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.20 E-value=1.9e-10 Score=108.83 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=101.7
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc-----------hhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-----------PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----------~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 746 (1088)
+...|..+...|+|.+|+..|.+++...+....... ..++.|+|.||+++|++.+|+..|+.++.. +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~ 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 97 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--c
Confidence 344677888899999999999999987764322111 247889999999999999999999999998 7
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHhHHHHHHHHH
Q 001392 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1088)
Q Consensus 747 ~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~~ 797 (1088)
|.++.+++.+|.+|...|++++|+..|+++++++|+++.+..++..+.++.
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999876554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.1e-11 Score=107.25 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHH
Q 001392 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRY 208 (1088)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~p~~~-~~~~~~lg~~~~ 208 (1088)
.++..++..+++++|.+.|++++..+|+++.+++.+|.+++..+ ++.+|+.+|++++..+|.+. ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999998754 55679999999998887652 357889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
.+|++++|+.+|+++++++|++..+...++.+....
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.19 E-value=2e-10 Score=108.71 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
.+...|..++..|+|.+|+..|.+++...|... .++..+|.+|+.+|+|.+|+..|++++.++|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 456678889999999999999999988655321 2334455555555555555555555555555
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1088)
.+ ..+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 99 ~~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 99 NN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hh-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55 445555555555555555555555555555555555555444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.19 E-value=3.2e-09 Score=111.05 Aligned_cols=231 Identities=17% Similarity=0.204 Sum_probs=139.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChhHHHHH
Q 001392 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1088)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1088)
||.+++.+|..++..|++.+|+.+|+++.+. .++.+++.+|.+|.. ..++..|..++..+.... . +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~-~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--c-cchhhc
Confidence 4678888888888888888888888888664 477888888888877 568888888888876644 3 344566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch-HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001392 203 IGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1088)
Q Consensus 203 lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1088)
+|.++.. ..+...|...|+.+.... ...+...++..+..... ......++..+..... +.+...+..|+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence 6766654 357777888888877654 34555555555443211 1224555555554433 3344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH---
Q 001392 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--- 354 (1088)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--- 354 (1088)
|..... ...+...+..++..+.. ..+..+++.+|.++..
T Consensus 152 ~~~~~~---------------------------------~~~~~~~~~~~~~~a~~-----~g~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 152 YDAGRG---------------------------------TPKDLKKALASYDKACD-----LKDSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp HHHTSS---------------------------------SCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTCS
T ss_pred hccCCC---------------------------------cccccccchhhhhcccc-----ccccccccchhhhcccCcc
Confidence 443110 12344455555555543 2344555556655554
Q ss_pred -cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 001392 355 -LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKID 406 (1088)
Q Consensus 355 -~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~k~l~~~ 406 (1088)
..++..|+.+|.++... +++.+++.||.+|.. ..++.+|+.+|+++....
T Consensus 194 ~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 194 ATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 44566666666666554 345566666666654 235666666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.19 E-value=8.6e-09 Score=107.70 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001392 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLK 380 (1088)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1088)
|.+++.+|..++..+++.+|+.+|+++.+ ..+..+++.||.+|.. ..++..|..++..+... .++.+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-----~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhh
Confidence 46777888888888888888888888875 3456777888888776 56788888888777654 4667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h----cCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001392 381 ALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1088)
Q Consensus 381 ~la~~~~~----~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1088)
.+|.++.. ..+...|...++.+....+ ..+...++..+ . ......++..+...... .....+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~ 145 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGC 145 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc-------cccchh
Confidence 77777664 3567778888887776543 44444455444 2 23344444444443321 135566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHH
Q 001392 452 NNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1088)
Q Consensus 452 ~~l~~~~~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1088)
..+|.++.. ..+...+..++..+.. ..++.+
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~---------------------------------------------~g~~~A 180 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACD---------------------------------------------LKDSPG 180 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------------------------------------------TTCHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccc---------------------------------------------cccccc
Confidence 667766665 3455555566555544 225566
Q ss_pred HHhHHHHHHh----cCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCC
Q 001392 528 LFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNG 590 (1088)
Q Consensus 528 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p 590 (1088)
.+++|.+|.. ..++..|+.+|.++.+. .++.+++.||.+|.. ..++.+|..+|+++....+
T Consensus 181 ~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 181 CFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 6666666665 45666666666666554 345666666666654 2356666666666666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.16 E-value=4.9e-10 Score=108.01 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1088)
..+...|..++..|+|.+|+..|.+++...|.. ..++..+|.|++..|+|.+|+..+++++.++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 356778999999999999999999998764432 23455677778888888888888888888888
Q ss_pred CChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhch
Q 001392 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1088)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1088)
.+ ..+++.+|.|+..+|++++|+..|.+++.++|++..++..++.+....+.
T Consensus 96 ~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 96 AN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 77 66677788888888888888888888888888887777777766655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.15 E-value=2.1e-10 Score=101.94 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001392 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1088)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1088)
..+.+|.++++.|++.+|+..|++++..+|++ +.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc-chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 45677888888888888888888888888888 67788888888888888888888888888888888888888888888
Q ss_pred hchHHhHHHHHHHHHHHH
Q 001392 244 ANEAAGIRKGMEKMQRAF 261 (1088)
Q Consensus 244 ~~~~~~~~~Al~~~~~al 261 (1088)
.|+ +.+|+..+++.+
T Consensus 97 ~g~---~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHN---ANAALASLRAWL 111 (112)
T ss_dssp HHH---HHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHh
Confidence 888 888888888764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.15 E-value=7e-10 Score=106.88 Aligned_cols=133 Identities=16% Similarity=0.203 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC------------chhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001392 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE------------FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1088)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1088)
..+...|..++..|+|.+|+..|.+++..++..+. ...++.++|.+|..+|++.+|+..+++++.++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 44556677777777777777777777654432222 234577899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH-HHHHHHHHHHHHH
Q 001392 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT-GAALDAFKTARTL 438 (1088)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~-~~A~~~~~~a~~~ 438 (1088)
.++.+++.+|.+|..+|++++|+..|.+++.++|++..++..++.+. ..+.+ +.....|.++.+.
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999887 44433 3344555555444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.14 E-value=3.1e-10 Score=109.72 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001392 131 WVGKGQLLLAKGEVEQASSAFKIVLEA----------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1088)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1088)
+...|..++..|+|.+|+..|.+++.. +|.+..++..+|.+++..|+|++|+..|.++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 345677777788888888888777653 2334455566666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
+ +.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus 110 ~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 110 N-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred h-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 6 555666666666666666666666666666666666665555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.12 E-value=1.3e-10 Score=108.57 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001392 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (1088)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 174 (1088)
.|.+.|++|+..|++++.++|+++.+++.+|.+++..+ .+++|+..|+++++++|+++.+++.+|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 45677889999999999999999999999999988654 45677777777777777777777777777766
Q ss_pred cCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 001392 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1088)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1088)
.|++. +.. ....+.+..|+.+|++++.++|++..++..|+.+....
T Consensus 88 ~g~~~-------------~~~-----------~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 88 FAFLT-------------PDE-----------TEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHC-------------CCH-----------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred cccch-------------hhH-----------HHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 54310 000 00112346666666666666666666666666655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.6e-10 Score=102.52 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------hHHHHHH
Q 001392 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRLGI 203 (1088)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~l 203 (1088)
.+-.+|..++..|+|++|+.+|.+++..+|+++.++..+|.+|+..|+|++|+..|.+++.++|.+. ..+++.+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999988763 2356778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001392 204 GLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1088)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1088)
|.++..++++++|+.+|.+++..+|+ +...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT-PDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-HHHH
Confidence 88899999999999999999988774 4443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.09 E-value=3.4e-10 Score=109.42 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCcchHHH
Q 001392 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1088)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1088)
..+...|..++..|+|.+|+..|.+++...+....... . .......|....++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~---------------------~------~~~~~~~~~~~~~~ 80 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE---------------------D------ADGAKLQPVALSCV 80 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC---------------------H------HHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhh---------------------h------HHHHHhChhhHHHH
Confidence 34556788999999999999999999874321100000 0 00011346678899
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccc
Q 001392 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 608 (1088)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~ 608 (1088)
.++|.++..+|++++|+..|.++++.+|+++.+|+++|.++..+|++++|+..|++++.++|+++.+...++.+......
T Consensus 81 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 81 LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888766655
Q ss_pred hHHH
Q 001392 609 WVKA 612 (1088)
Q Consensus 609 ~~~A 612 (1088)
..++
T Consensus 161 ~~~~ 164 (169)
T d1ihga1 161 QKDK 164 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.08 E-value=3e-10 Score=106.15 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=92.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHH
Q 001392 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1088)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1088)
|-+.+.|++|+..|++++..+|+++.+++.+|.++...+++..+.. ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHH
Confidence 3445667778888888888888888887777777776555443332 123456777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhch--------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 001392 218 QAFQRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1088)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1088)
..|+++++++|+++.+++.+|.++...|. ...+.+|+..|++++.++|++..++..|+.+.-..+.+.++
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888877776653 23489999999999999999999999999887666555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.4e-09 Score=99.17 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=91.6
Q ss_pred HHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-----H
Q 001392 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 750 (1088)
Q Consensus 676 ~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~ 750 (1088)
..+..+|..+...|+|++|+.+|+++++..| .++.++.++|.+|..+|+|.+|+..|++++...+.... .
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a 79 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3456789999999999999999999999998 78999999999999999999999999999998655444 4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001392 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1088)
Q Consensus 751 ~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~ 783 (1088)
.++..+|.++...+++++|+.+|.+++..+|+.
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 578889999999999999999999999988754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.4e-09 Score=92.97 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHH
Q 001392 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 787 (1088)
+++-++.+|.+++.+|+|.+|+.+|+++++..+..+. +.++.+||.+|++.|++++|+.+|+++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 4677899999999999999999999999998765332 78999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 001392 788 FDAGVAMQ 795 (1088)
Q Consensus 788 ~nla~~~~ 795 (1088)
+|++.+.+
T Consensus 84 ~Nl~~~~~ 91 (95)
T d1tjca_ 84 GNLKYFEY 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.71 E-value=3.1e-08 Score=93.68 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=88.5
Q ss_pred HhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC---
Q 001392 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--- 747 (1088)
Q Consensus 678 ~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~--- 747 (1088)
+.+.|..+...|+|++|+..|+++++..|..+-. ....+|.++|.+|..+|++++|+..|+.++..++..
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 91 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 91 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence 3345888889999999999999999998753210 124679999999999999999999999999876431
Q ss_pred -CC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChh
Q 001392 748 -TD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1088)
Q Consensus 748 -~~-----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~ 785 (1088)
++ ..+++.+|.+|...|++++|+..|++++++.|....
T Consensus 92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 11 446889999999999999999999999999875543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.8e-08 Score=83.18 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001392 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1088)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1088)
...+.+|.+++..|+|.+|+.+|++++.+.|.. ...++..+|.|+.++|++++|+..|+++++++|+++.++.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 445566666677777777777777666654432 24567778888888888888888888888888888887777
Q ss_pred HHHHHH
Q 001392 237 LAVMDL 242 (1088)
Q Consensus 237 la~~~~ 242 (1088)
++.+..
T Consensus 86 l~~~~~ 91 (95)
T d1tjca_ 86 LKYFEY 91 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.69 E-value=3.5e-08 Score=93.27 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=87.4
Q ss_pred hHHHHHhhhHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC------------HHHHhhHHHHHHhcCCchHHH
Q 001392 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------------LYAANGAGVVLAEKGQFDVSK 695 (1088)
Q Consensus 628 ~~a~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~a~~~la~~l~~~g~~~~A~ 695 (1088)
.+.++..|+. ++.. |+|++|+..|++++.+.|.. ..+++++|.+|...|++++|+
T Consensus 9 a~~~l~~g~~-~~~~------------g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~ 75 (156)
T d2hr2a1 9 AYLALSDAQR-QLVA------------GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 75 (156)
T ss_dssp HHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhh
Confidence 3444455777 7777 99999999999999988764 367889999999999999999
Q ss_pred HHHHHHHHHhcCCCC------CCchhHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCC
Q 001392 696 DLFTQVQEAASGSVF------VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (1088)
Q Consensus 696 ~~~~~~~~~~p~~~~------~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~ 747 (1088)
..+++++...|.... +....+++++|.+|..+|++++|+..|++++..++..
T Consensus 76 ~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 76 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 999999988753111 1124478999999999999999999999999987543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.53 E-value=3.7e-08 Score=101.29 Aligned_cols=125 Identities=12% Similarity=-0.035 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
+|++++|+..|.++++.+|.++.++..+|.+++..|++++|+..|+.+++.+|++..++..++.++...+...++...+.
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~ 88 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence 34455666666666666666666666666666666666666666666666666666666666666555544444433332
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1088)
......+......++..+.++...|++++|...+.++.+..|..+
T Consensus 89 ~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 89 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 222221111133344455566666666666666666666665543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.46 E-value=9.5e-08 Score=98.17 Aligned_cols=130 Identities=10% Similarity=-0.004 Sum_probs=87.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHH
Q 001392 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1088)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1088)
+.-.+..|++++|+..|+++++.+|+++.++..++.+++..|++++|+..|+++++++|+. ...+..++.++...+...
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccccH
Confidence 3445667788888888888888888888888888888888888888888888888888777 455666666666555555
Q ss_pred HHHHHHHHHHh-hCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCH
Q 001392 215 KARQAFQRALQ-LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1088)
Q Consensus 215 ~A~~~~~~al~-~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1088)
++...+.+... ..|.....+...+.++...|+ +++|...+.++.+..|..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCCC
Confidence 54443333222 234444555566666666666 7777777777777776654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.28 E-value=3.6e-06 Score=80.58 Aligned_cols=94 Identities=23% Similarity=0.158 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHHHHHH
Q 001392 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------------PALLGQACVEFNRGRYSDSLEFYK 186 (1088)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~a~~~la~~~~~~g~~~~Al~~~~ 186 (1088)
..++..|..+...|++++|+..|.+++.+.+..+ .++..++.++...|++.+|+..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 3455666777777777777777777776655442 334444444444444444444444
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001392 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1088)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 223 (1088)
+++..+|.+ ..+|..++.++..+|++.+|+..|+++
T Consensus 92 ~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 92 ALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444444 344444444444444444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.11 E-value=3.4e-05 Score=73.50 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001392 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1088)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1088)
....+...|......|++++|+..|.+++...+ ......+..+ .+ .......+.+....++..++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r---G~~l~~~~~~-------~w-----~~~~r~~l~~~~~~a~~~la 74 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWR---GPVLDDLRDF-------QF-----VEPFATALVEDKVLAHTAKA 74 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---SSTTGGGTTS-------TT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc---ccccccCcch-------HH-----HHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999997443 2222111111 00 01112223344567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc-CCCCCHH
Q 001392 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPIE 449 (1088)
Q Consensus 384 ~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~ 449 (1088)
.++...|++++|+.++++++..+|.+..+|..++.++ ..|++.+|+..|+++...+... +..+.+.
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999999999999999999999999999 9999999999999998887653 4443443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=1e-05 Score=69.84 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=69.9
Q ss_pred chhHHHHHHHHHHHc---cCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCChhHHh
Q 001392 713 MPDVWINLAHVYFAQ---GNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1088)
Q Consensus 713 ~~~~~~~la~~~~~~---g~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 788 (1088)
.+.+.|++||++... .+..+||.+++.+++. .+.+ ...+++||.+|++.|++.+|++++.+++++.|++..+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 477899999999976 4567999999999986 4444 579999999999999999999999999999999988776
Q ss_pred HHHHHHHHH
Q 001392 789 DAGVAMQKF 797 (1088)
Q Consensus 789 nla~~~~~~ 797 (1088)
..-.|-.++
T Consensus 112 L~~~Ie~~~ 120 (124)
T d2pqrb1 112 LKSMVEDKI 120 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=0.00011 Score=66.28 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----ccCH
Q 001392 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (1088)
Q Consensus 655 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~l~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 730 (1088)
.++.+|+.+|+++.+.+ ++.+...|+. ....+.++|+.+|.++.+. .++.+.++||.+|.. ..++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc-------cchhhhhhHHHhhhhccccchhh
Confidence 78999999999998875 5556666654 3456889999999999885 478999999999986 4579
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCC
Q 001392 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAP 781 (1088)
Q Consensus 731 ~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~----~g~~~~A~~~l~~al~~~p 781 (1088)
.+|+.+|+++.+. .++...+.||.+|.. ..+..+|+.+|+++.+...
T Consensus 76 ~~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 76 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999999999875 568899999999987 4689999999999988763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=0.0001 Score=63.50 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001392 162 VPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1088)
Q Consensus 162 ~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1088)
+.+.+..|.++.+.. +..+|+.+++.++..+|......++.+|.+|+++|+|++|+.+++++|+++|+|..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 445555555555443 23456666666666665554455566666666666666666666666666666665544433
Q ss_pred H
Q 001392 239 V 239 (1088)
Q Consensus 239 ~ 239 (1088)
.
T Consensus 115 ~ 115 (124)
T d2pqrb1 115 M 115 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.61 E-value=0.00068 Score=60.72 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 001392 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (1088)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al 182 (1088)
..++.+|+.+|.++.+.. ++.+.+.++. ....++++|+..|.++... .++.+.+.+|.+|.. ..++.+|+
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence 357889999999998764 5666666664 3456788899998888764 478888888888876 45788888
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 001392 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 227 (1088)
.+|+++.... + +...+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 80 ~~~~~aa~~g--~-~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN--D-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC--c-chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888887754 2 4456778887776 457888888888877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.29 Score=53.09 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=35.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHh
Q 001392 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (1088)
Q Consensus 564 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 619 (1088)
..+..+...|....|...+..++.. .++.-...++.+..+.|.+..|+....++
T Consensus 386 ~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 386 ARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3455566777777777777666543 24555666677777777777777766655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.3 Score=52.98 Aligned_cols=372 Identities=11% Similarity=-0.021 Sum_probs=208.6
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001392 151 FKIVLEADRDNVPALLGQ---ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1088)
Q Consensus 151 ~~~al~~~p~~~~a~~~l---a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1088)
+..++...|+.+...... ...+...+++...+..| ...|.+ ....+..+.+....|+...|...+..+....
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~-~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGT-TEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 455667788887664333 23455667776544433 224555 5556778888888999988888877776554
Q ss_pred CCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001392 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1088)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 307 (1088)
+..+.....+- ........-.+..+...+..++..|++..|..++..+- +.....
T Consensus 133 ~~~p~~c~~l~-------------------~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~------~~~~~~ 187 (450)
T d1qsaa1 133 KSQPNACDKLF-------------------SVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP------ADYQTI 187 (450)
T ss_dssp SCCCTHHHHHH-------------------HHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC------GGGHHH
T ss_pred CCCchHHHHHH-------------------HHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCC------hhHHHH
Confidence 44333222222 22222223334444455566666777776666654321 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-
Q 001392 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY- 386 (1088)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 386 (1088)
...+..+....... .... ... ............+..-....+...|...+.......+.....+.......
T Consensus 188 ~~a~~~l~~~p~~~---~~~~----~~~-~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a 259 (450)
T d1qsaa1 188 ASAIISLANNPNTV---LTFA----RTT-GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVA 259 (450)
T ss_dssp HHHHHHHHHCGGGH---HHHH----HHS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHhH---HHHH----hcC-CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHH
Confidence 11111111111111 1111 111 11111122333444444556888899988888776665554433333322
Q ss_pred ---HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001392 387 ---VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1088)
Q Consensus 387 ---~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (1088)
...+....+...+........+.......++..+..+++..+...+..+.. .........+-+|..+...|+
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~-----~~~~~~r~~YW~gRa~~~~G~ 334 (450)
T d1qsaa1 260 WRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPM-----EAKEKDEWRYWQADLLLERGR 334 (450)
T ss_dssp HTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT-----TGGGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCc-----ccccHHHHHHHHHHHHHHcCC
Confidence 334667788888877766555544444445544577888888777664421 112236788899999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCc---chHHHHhHHHHHHhcCC
Q 001392 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN---KVTVLFNLARLLEQIHD 540 (1088)
Q Consensus 464 ~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~ 540 (1088)
.+.|..+|..+..... +...+....+.. .+.-....+...+. ........+..+...|.
T Consensus 335 ~~~A~~~~~~~a~~~~----------------fYG~LAa~~Lg~--~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~ 396 (450)
T d1qsaa1 335 EAEAKEILHQLMQQRG----------------FYPMVAAQRIGE--EYELKIDKAPQNVDSALTQGPEMARVRELMYWNL 396 (450)
T ss_dssp HHHHHHHHHHHHTSCS----------------HHHHHHHHHTTC--CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHhcCCC----------------hHHHHHHHHcCC--CCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCC
Confidence 9999999998876321 111111000000 00000000111111 11223456777889999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001392 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1088)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 585 (1088)
...|...+..++... +..-...++.+....|.++.|+....++
T Consensus 397 ~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 397 DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 999999998877543 4667778899999999999999777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.81 E-value=0.35 Score=49.47 Aligned_cols=272 Identities=12% Similarity=0.072 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhhHHHH
Q 001392 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1088)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1088)
...|..++..|.|+.|..+|...- -+-.+..++...+++..|+.++.+. .....|..+...
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~--------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFA 78 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence 345666677777777777776432 2344556677788888887777654 234456666667
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 001392 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431 (1088)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~k~l~~~p~~~~~~~~la~l~~~~~~~~A~~~ 431 (1088)
+.......-+..+ ... -...+.-...+...|...|.++..+.+++.++...+.+...+..++.+|..-+..+-+++
T Consensus 79 l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~ 154 (336)
T d1b89a_ 79 CVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 154 (336)
T ss_dssp HHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHH
Confidence 7666665443221 111 112444555667777788888888888888887777788888888887744445554444
Q ss_pred HHHH---------HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001392 432 FKTA---------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1088)
Q Consensus 432 ~~~a---------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1088)
+... +..... ...|..+..+|.+.|.++.|+...-.-..
T Consensus 155 l~~~s~~y~~~k~~~~c~~------~~l~~elv~Ly~~~~~~~~A~~~~i~~~~-------------------------- 202 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQ------AHLWAELVFLYDKYEEYDNAIITMMNHPT-------------------------- 202 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHT------TTCHHHHHHHHHHTTCHHHHHHHHHHSTT--------------------------
T ss_pred HHhccccCCHHHHHHHHHH------cCChHHHHHHHHhcCCHHHHHHHHHHcch--------------------------
Confidence 4332 111111 12234456677778888887776643221
Q ss_pred hhhhhhhhhccCCCCcCCCCcchHHHHhHHHHHHhcCCHHHHHHHHHHHHHHcCCcHHH----------HHHHHHHHHHc
Q 001392 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----------YLRLAAIAKAR 572 (1088)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------~~~la~~~~~~ 572 (1088)
++.-....-.++.+..+.+..-+.....+..+|..... ..++.....+.
T Consensus 203 ---------------------~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 203 ---------------------DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp ---------------------TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred ---------------------hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 11111111122223333333222222223333332111 13344556677
Q ss_pred CChHHHHHHHHHHHHHCCCChhHHHhhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001392 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1088)
Q Consensus 573 g~~~~A~~~l~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 625 (1088)
++..-...++...... ++..+...++.+|...++++. +++.+..+..
T Consensus 262 ~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~----l~~~i~~~~~ 308 (336)
T d1b89a_ 262 KQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA----LRTSIDAYDN 308 (336)
T ss_dssp TCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH----HHHHHHHCCC
T ss_pred CCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH----HHHHHHHhcc
Confidence 7888788888775443 356788899999999999743 5555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.47 E-value=0.59 Score=47.73 Aligned_cols=209 Identities=14% Similarity=0.103 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001392 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1088)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1088)
|.|+.|..+|+..- -+-....++...+++..|...+.+. +++..|......+.......-|.-
T Consensus 28 ~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i---- 90 (336)
T d1b89a_ 28 KMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM---- 90 (336)
T ss_dssp -CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred CCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH----
Confidence 34446777776542 2344556677888888888877665 467788777777777766654321
Q ss_pred HHHhCCCChhHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhchHHhHHHHHHHHHHHHHhCCCC
Q 001392 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1088)
Q Consensus 188 al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1088)
........+.-...+...|...|.++..+..++.++...+.+...+..++.++.+.+. .+-+..+...- +.-
T Consensus 91 -~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~----~kl~e~l~~~s--~~y- 162 (336)
T d1b89a_ 91 -CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP----QKMREHLELFW--SRV- 162 (336)
T ss_dssp -TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH----HHHHHHHHHHS--TTS-
T ss_pred -HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh----HHHHHHHHhcc--ccC-
Confidence 1111111123334566777788888888888888887777777777777777766542 23333332210 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHhh
Q 001392 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1088)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1088)
+...++..++.. ..|-.+...|...|+++.|+.+.-.- +..+.-...
T Consensus 163 ---------------~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~~i~~-------~~~~~~~~~ 209 (336)
T d1b89a_ 163 ---------------NIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIITMMNH-------PTDAWKEGQ 209 (336)
T ss_dssp ---------------CHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHHHHHS-------TTTTCCHHH
T ss_pred ---------------CHHHHHHHHHHc-----------CChHHHHHHHHhcCCHHHHHHHHHHc-------chhhhhHHH
Confidence 112222222211 23444566777788888887665321 222222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001392 348 LGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1088)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1088)
.-.++.+..+.+..-....-.+..+|.
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~~p~ 236 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEFKPL 236 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHccCChHHHHHHHHHHHHcCHH
Confidence 444556666666555555555555554
|