Citrus Sinensis ID: 001396
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1086 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WV90 | 1120 | Topless-related protein 1 | yes | no | 0.963 | 0.933 | 0.540 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.984 | 0.945 | 0.535 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.971 | 0.929 | 0.495 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.959 | 0.921 | 0.462 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.965 | 0.945 | 0.463 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.264 | 0.211 | 0.274 | 9e-19 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.495 | 0.352 | 0.220 | 1e-14 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.469 | 0.405 | 0.220 | 3e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.462 | 0.298 | 0.225 | 2e-11 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.233 | 0.342 | 0.248 | 2e-11 |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function desciption |
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Score = 1172 bits (3033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1119 (54%), Positives = 773/1119 (69%), Gaps = 73/1119 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 219 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 261
Q T SP + W S S + AVS ++L P+ +A +D P D
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299
Query: 262 SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 315
SD +S+++ P+ I +E + V T+PG ++ + F++ D
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343
Query: 316 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 375
PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+
Sbjct: 344 LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402
Query: 376 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 435
CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403 KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462
Query: 436 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 495
G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463 GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522
Query: 496 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555
IFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523 IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582
Query: 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615
ESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT IDA GG
Sbjct: 583 ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640
Query: 616 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 674
L +PRI FNK G+LLAV AN+N IK++ + + LS K ++N I V
Sbjct: 641 LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700
Query: 675 AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 731
+N D + DVKP I+ E+ +KS+V K PS+C+SL LP ++ KI
Sbjct: 701 PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760
Query: 732 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791
SRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G M ND
Sbjct: 761 SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819
Query: 792 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 851
++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879
Query: 852 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911
+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939
Query: 912 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 970
W Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C+KQW P+
Sbjct: 940 WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998
Query: 971 -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1029
S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S +V+P
Sbjct: 999 ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058
Query: 1030 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/1143 (53%), Positives = 782/1143 (68%), Gaps = 74/1143 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD KA++IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 219 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 261
Q T SP + W S S + AVS A++L P+ A ++D P D
Sbjct: 240 QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299
Query: 262 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 320
S+ +S+++ P+ I +E V +S +S ++ F++ D PKTV
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348
Query: 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 380
A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM
Sbjct: 349 ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407
Query: 381 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 440
+ ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408 LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467
Query: 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500
++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468 ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 501 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560
+DGKIKAWLYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528 LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587
Query: 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620
+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +P
Sbjct: 588 VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645
Query: 621 RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 674
RI FNK G+LLAV NEN IKI+ + + +S K ++N I + T
Sbjct: 646 RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705
Query: 675 AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 725
AG A+ S +V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP
Sbjct: 706 AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765
Query: 726 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 785
++ KISRL + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G
Sbjct: 766 LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824
Query: 786 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 845
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825 MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884
Query: 846 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 905
+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 885 HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944
Query: 906 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 965
VW+ DGW Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+K
Sbjct: 945 VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004
Query: 966 QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1024
QW S+ PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 1025 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1082
V+P IAAHP +P FAVGL++G V++ EP E W V PP E PT+ S G
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1083 AMD 1085
A D
Sbjct: 1125 ASD 1127
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/1159 (49%), Positives = 742/1159 (64%), Gaps = 104/1159 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F ++ H F+F+M++FED + G+W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD D AKA++IL K+LK F+ NEELFKE+ LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L + R++E LSKY GD SAR M+ ELK++IEANP+ + KL+FPS+K RLR LINQSL
Sbjct: 121 LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 219 QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 260
Q T +P + + + M S VS + L P N AV+M +RP
Sbjct: 240 QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298
Query: 261 ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 310
DS+ +L P I L VTYPG QS
Sbjct: 299 QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338
Query: 311 TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 368
++S D PK V++ L +GS+ SMDFHPVQ T+LLVGTN+GD +W+V S +KL R+
Sbjct: 339 ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397
Query: 369 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 428
FKVWD+ C++ + +L + +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R
Sbjct: 398 FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457
Query: 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488
LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548
KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG CT MAY A+G RLFSCGTSKEGE
Sbjct: 518 QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577
Query: 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 608
SF+VEWNESEGA+KRTY GL + SV VV FDT K++ L AGD+ +K WDM+ V LL+
Sbjct: 578 SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635
Query: 609 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 664
+ A GGLP +P + NK GTLLAV +N IKIL E +S+ G+ S
Sbjct: 636 STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695
Query: 665 SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 705
SV PI ++ TG ++ G S +N D + DVKP I+ +AE
Sbjct: 696 SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755
Query: 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 765
+ + S+ ++L LP + ++ +L Y N G AI ALA N H +W+W +++ L
Sbjct: 756 WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815
Query: 766 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 825
+A + VPP+L+QP G M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816 GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874
Query: 826 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 885
TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH KRVTG
Sbjct: 875 TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934
Query: 886 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945
L FS+ LN+LVSSG D+Q+ VW +DGW Q + +Q P G + T +QFH+DQ
Sbjct: 935 LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994
Query: 946 LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004
L+VH + LAIYEA +L +KQW P SS ++ A +SCD + ++ +F DG++SI A+ L
Sbjct: 995 LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054
Query: 1005 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1063
+++CRI +YL P+ VYP +AAHP +P QFAVGLT+G V+VIEP P W +
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113
Query: 1064 LPPDEIVGDQPTSTSEGDR 1082
PP+ G +S D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/1120 (46%), Positives = 719/1120 (64%), Gaps = 78/1120 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F ES H F+F++K+FE+ L G+W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M ELK++IEANP+ + KL FPS K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 227
NWQH C NP+PNPDI TLF+DH C ++ LP PS++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236
Query: 228 -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 286
F S+ + +A +++P + S +++ SP + Q + + +P
Sbjct: 237 GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290
Query: 287 SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 330
++ +S+ +++ + S S D P+ V T+ +GS
Sbjct: 291 PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350
Query: 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390
+SMDFHP HTLL VG + G+ LW+V S +K+ FK+W++ ACS++F+ ++V++P
Sbjct: 351 -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409
Query: 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 450
+SV RV WSPDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410 ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQM 468
Query: 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 510
V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469 CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527
Query: 511 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570
D++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G
Sbjct: 528 DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585
Query: 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630
+ S VV FDT +++ LA G+D+ IK W+M+ LLT ++A GGLP PR+ FNK+G L
Sbjct: 586 RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645
Query: 631 LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 681
LAV +AN + ++ L E+ S +A+ D K+S + +++ I
Sbjct: 646 LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703
Query: 682 VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 726
P +EA +++ + KPL P++C+ + +P SK
Sbjct: 704 HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763
Query: 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 786
+K++RL Y N G + AL SNGV +W+W RN+ + +AT V P+ +QP G M
Sbjct: 764 SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822
Query: 787 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 846
ND + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823 ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881
Query: 847 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 906
P DNN+IAIGM+DS+I IYN R EV +KL+GH K +TGL FS ALNILVSSG DAQ+F
Sbjct: 882 PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941
Query: 907 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 966
W D W + ++Q P G + +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942 WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999
Query: 967 WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCL 1023
W P ++ PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI +AY+ +PT +
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059
Query: 1024 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1063
++P I AHP +P Q AVGL++G V VIEP+E W V
Sbjct: 1060 PIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/1129 (46%), Positives = 706/1129 (62%), Gaps = 81/1129 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL EE F ES H F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD + AKA+ IL +DL+ F+ NEEL+KE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L + R++E LSKY GD +AR M+ ELK++IEANP+ + KL FP+++ RLR LINQSL
Sbjct: 121 LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 227
NWQH C NP+PNPDI TLF DH C L + + P T P+++
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236
Query: 228 ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 275
+S M S S V ++ P M +P++ + IL
Sbjct: 237 PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284
Query: 276 EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 326
+ PG+ PD+ P S+++ + + + S D P A L +
Sbjct: 285 RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344
Query: 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 386
GS+ SM+F+P+Q+TLLLVG+ G+ LW++ + ++L R FK+WD+ CS F+ +
Sbjct: 345 GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 446
++ +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ EIDAHVG VNDLAF+ P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 447 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 506
+Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 507 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566
AWLYD+LG+RVDYDAPG CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 567 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626
+ Q VV FDT+K+ LA G+D IK WDMN + +LT+ DA GGLP P + FNK
Sbjct: 583 --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640
Query: 627 NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 685
+G LLAV +N KIL P S+ A + + V+ V GA +A+ + V
Sbjct: 641 DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699
Query: 686 E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 731
DP K I + + PS+C LP + K+
Sbjct: 700 RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 732 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791
+L Y N G I AL SNG+ +W+W N+ S +AT V P+ +QP G M ND +
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815
Query: 792 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 851
N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816 GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 852 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911
VIAIGM+DSTI IYN R EV SKL+GH KR+TGL FS ALNILVSSG DAQI W +D
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 912 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 971
W + ++Q P G A +T +QFH DQ R L+VHET LA+++A ++ C++QW P
Sbjct: 936 WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 972 SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1029
S+ PIS A ++C+ ++++T+F DG + + +A +L ++CRI +AYL L P
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLV 1051
Query: 1030 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1078
+AAHP P QFAVGL +G V ++EP E W ++PP E + + P++TS
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)
Query: 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 376
T QTL SS +S+ F P V + GD + K+WD G
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000
Query: 377 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 436
C T + G SV V +SPDG + ++++ G+ Q LE H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052
Query: 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 494
V + FS ++++ + DD TIK+WDAV+G+ T + EGHG V+S+ P +
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107
Query: 495 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554
+ S S+DG IK W S + G +A+S +G+R+ S + + W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162
Query: 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614
+ + G +T +G V V F ++ + D IKIWD T++ G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219
Query: 615 GLPENPRICFNKNGTLLAVIANENRIKILET 645
G ++ + F+ +G +A +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)
Query: 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402
+L G++ LWD++SGQ C FK R V VV+SP+
Sbjct: 920 MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960
Query: 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 461
+L S V+L+ G + L I H G V +AF+ ++ T D+T+
Sbjct: 961 LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014
Query: 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 521
++WD + Y F+GH + V S+ + + + S S D ++ W D Y
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070
Query: 522 PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 579
G C R + +S +G L S G + + W+ S G T QG + V +
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123
Query: 580 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639
F + D ++++WD++ + L T+ G + F+ +G LA + +
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181
Query: 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 692
+++ + S + + + + NP + +G ++ +V + E
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241
Query: 693 ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 742
P+ S+ A S+ L+ S+C L + N ++ + +N G
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298
Query: 743 IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 782
+ + + + +W W + D T+ + RL+ G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358
Query: 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 841
T V S + A L S SG + L+ + + K + T+ +
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414
Query: 842 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 901
S+ F+P D ++A G DD T+ ++N S E + L GH V + FS IL S D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473
Query: 902 AQIFVWDVD-GWGIQTCRSLQTPDGV 926
I +WDV G I+T +S + +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 35/545 (6%)
Query: 368 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 427
+ +VW++ + +L + R V VV+SPDG +L + V+L++ G +
Sbjct: 665 HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720
Query: 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487
+ H V +AF + ++ + DKTIK+WD G+ + GH V C
Sbjct: 721 --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774
Query: 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 546
+ + + S + D IK W S G + G R +A+SA+G+ L S
Sbjct: 775 AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829
Query: 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606
G+ + WN G +TY G NSV + + +++ D IK+WD
Sbjct: 830 GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886
Query: 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 666
+ T+ G E + F+ +G LA ++ + +++ + A +D ++
Sbjct: 887 IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944
Query: 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 726
+P + +G + +V + + IS + + F+ S Q+L S
Sbjct: 945 SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999
Query: 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 786
+ ++ ++ Q I ++ V+ + P+ + + A V +L+ G
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055
Query: 787 VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 845
T S + + A S + L SAS + L+ T + + + S S F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112
Query: 846 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 905
+P + +IA D T+ I++ + + + L GH+ V + FS IL S+ D +
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171
Query: 906 VWDVD 910
+WDV+
Sbjct: 1172 IWDVN 1176
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+V V +SPDG + S ++L+ G+ + I H VN++ FS K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 508
+ D +IK+WD +G + GH A V ++ P + I + S D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225
Query: 509 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563
L +L D+ +++S +G+ L S K + W ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275
Query: 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623
T +G ++SV V+F + I +A D+ IK+W+ + ++L T GG+ +
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329
Query: 624 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 680
F + ++A + +N I++ + P + ++ VL+ N +V+ + S + AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385
Query: 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 738
++ + S+ SLL LP
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402
Query: 739 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798
G +AI+ ++ P+ DL S A V ++++ R G D+
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448
Query: 799 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 857
V S + L SAS + L+ V K T+ + ++F+P D +IA
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507
Query: 858 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 916
D TI ++++ S +I L H+ V + F+ ++L S+ D + +W DG + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567
Query: 917 --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 968
S +PDG + SE D+T + + HL LT L
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609
Query: 969 PISSVPISQATFSCDCRMVFTSFVDGTLSI 998
P + A FS D + + + +D T I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 20/274 (7%)
Query: 369 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 428
VWD+ + L D V V +SPDG+LL V+L+ + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536
Query: 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488
+ H V D+AFS ++ + D T ++W+ TG+ +GH VY++
Sbjct: 537 AVFEGHTHYVLDIAFSPDGSMVA--SGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA-- 592
Query: 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548
+ + S S DG I+ W + R AP +A+S +G L +
Sbjct: 593 FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----SD 647
Query: 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 608
S + W+ + G T++G + V V F + + DD I++WD+ + T
Sbjct: 648 STVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT 704
Query: 609 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642
T++ G P + + F+ GT LA + + I+I
Sbjct: 705 TLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1086 | ||||||
| 224141931 | 1109 | predicted protein [Populus trichocarpa] | 0.975 | 0.954 | 0.580 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.958 | 0.919 | 0.552 | 0.0 | |
| 357455305 | 1149 | WD repeat-containing protein, putative [ | 0.959 | 0.906 | 0.546 | 0.0 | |
| 357455301 | 1134 | WD repeat-containing protein, putative [ | 0.959 | 0.918 | 0.546 | 0.0 | |
| 357455303 | 1112 | WD repeat-containing protein, putative [ | 0.959 | 0.937 | 0.552 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.957 | 0.917 | 0.547 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.960 | 0.916 | 0.549 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.969 | 0.926 | 0.546 | 0.0 | |
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.954 | 0.920 | 0.549 | 0.0 | |
| 297839887 | 1120 | hypothetical protein ARALYDRAFT_895943 [ | 0.956 | 0.927 | 0.543 | 0.0 |
| >gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/1103 (58%), Positives = 779/1103 (70%), Gaps = 44/1103 (3%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
M+ L KDLV LI QFL+EEGF E+A + +YF MKFFEDMI G W++ E+YLS F
Sbjct: 1 MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TK+DDNRYSTKIYFEIRKQ F E LD + +KAL+IL KDLK FAP NEEL KE+ LLT
Sbjct: 61 TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++IRDHE LS Y DA SARK MM+ELK++IEANP+L+ KL+FP+I RLRRLINQSL
Sbjct: 121 LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 227
NWQH+HCA PQPNPDI TLFVDH+C +D FS +S+SN LP QTT + S+
Sbjct: 180 NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238
Query: 228 NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 280
N +SS S++S ALSL PTN + E +LS + + +L E +T
Sbjct: 239 NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297
Query: 281 VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 335
V G+ I + S+ +F F S D PK V + L EGSS P SMD
Sbjct: 298 VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356
Query: 336 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395
FHP + T+LLVGT VGD GLW+V+SG+ L RNFKVWDI ACSM+FK L++DP VSVNR
Sbjct: 357 FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416
Query: 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 455
V WSP+G L GVAYSKH+VQ+Y+Y+ DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417 VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476
Query: 456 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 515
GDDK +K WDA G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477 GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536
Query: 516 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 575
RVDYDAPGLGCT MAYS + RRLFSCGTS GESFLVEW++SEGAIKRTY G LQ NS
Sbjct: 537 RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593
Query: 576 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635
SVV FD K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594 SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653
Query: 636 NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 687
N+N+IKIL S + L D+ R +S IS A A+ +V+ +
Sbjct: 654 NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712
Query: 688 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 747
+ VK +I+ + PS+CQ L LPS +KANKISRL YNN G +I AL
Sbjct: 713 NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772
Query: 748 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 807
SN HL W+WP+ND LS A KV P+L+QPR M ND T SN +E VPCFALS+N
Sbjct: 773 SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832
Query: 808 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 867
D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN
Sbjct: 833 DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892
Query: 868 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 927
RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW Q LQ PDG +
Sbjct: 893 RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952
Query: 928 TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 985
+ S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P + PIS ATFSCD +
Sbjct: 953 PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012
Query: 986 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1045
MV+ SF+DG +SI +AS+ ++ C+I TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071
Query: 1046 NGEVYVIEPNEPGDTWAVLPPDE 1068
+G V V EP W++L DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1138 (55%), Positives = 782/1138 (68%), Gaps = 97/1138 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239
Query: 219 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 261
Q T +P + W + + + AVS A+ L P+ A ++D P D
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299
Query: 262 SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 312
SD +S+++ P+ + +E + T+PG N PD
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340
Query: 313 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 372
D PKT ++L +GSS PMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVW
Sbjct: 341 --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397
Query: 373 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 432
D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D Q LEID
Sbjct: 398 DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457
Query: 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 492
AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458 AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517
Query: 493 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552
I FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577
Query: 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612
EWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA
Sbjct: 578 EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635
Query: 613 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 664
GGLP +PRI FNK+G LLAV ANEN IKIL + NS+ S+ + K
Sbjct: 636 DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695
Query: 665 SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 711
++NPIS A ++N D + DVKP IS E+ +KS++ K
Sbjct: 696 TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755
Query: 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 771
PS+C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +AT
Sbjct: 756 NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815
Query: 772 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 831
V P+L+QP G M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874
Query: 832 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 891
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934
Query: 892 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 951
LN+LVSSG DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET
Sbjct: 935 LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994
Query: 952 HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010
LAIYEA +L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL ++CRI
Sbjct: 995 QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054
Query: 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
+AYL + S +V P IAAHP +P QFAVGL++G V+V EP+E W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1139 (54%), Positives = 775/1139 (68%), Gaps = 97/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL EE F E+ H FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 76 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 136 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 195 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254
Query: 219 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 257
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 255 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312
Query: 258 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 310
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 313 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354
Query: 311 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 370
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413
Query: 371 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 430
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473
Query: 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 490
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533
Query: 491 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 534 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593
Query: 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 594 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651
Query: 611 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 661
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 652 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710
Query: 662 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 710
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 711 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770
Query: 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 770
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +AT
Sbjct: 771 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830
Query: 771 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 830
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889
Query: 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 890 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949
Query: 891 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 950 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009
Query: 951 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1009
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069
Query: 1010 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1070 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1139 (54%), Positives = 775/1139 (68%), Gaps = 97/1139 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL EE F E+ H FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 219 QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 257
Q T +P + M + V+ ++S + PTN +V D
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297
Query: 258 RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 310
P DSD +S+++ P+ + +E + T+PG Q+F
Sbjct: 298 YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339
Query: 311 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 370
S D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340 NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398
Query: 371 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 430
VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399 VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458
Query: 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 490
IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459 IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518
Query: 491 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550
ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES
Sbjct: 519 ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578
Query: 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610
+VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+
Sbjct: 579 IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636
Query: 611 DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 661
DA GGLP +PRI FNK G+LLAV ANEN IKI L + E++S DA+ S+ +
Sbjct: 637 DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695
Query: 662 RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 710
K +NP+ + + A +N D + D+KP IS E+ +KS++ K
Sbjct: 696 TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755
Query: 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 770
PS C+SL LP + KISRL Y N G AI ALASN +HL+W+W RND S +AT
Sbjct: 756 INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815
Query: 771 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 830
VPP+L+QP G M ND D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816 SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874
Query: 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 875 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934
Query: 891 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950
LN+LVSSG D QIFVW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHE
Sbjct: 935 VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994
Query: 951 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1009
T LAIYEA +L CLKQWFP ++ PIS ATFSCD ++F SF+D T+ + ASNL ++CR
Sbjct: 995 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054
Query: 1010 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
I +AYL S ++ P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1185 bits (3065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/1117 (55%), Positives = 768/1117 (68%), Gaps = 75/1117 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL EE F E+ H FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSK YGD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G + PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239
Query: 219 QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 276
Q T +P + M + V+ S+S + + P D +S+++ P+ + +E
Sbjct: 240 QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297
Query: 277 ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 332
+ T+PG Q+F S D PKTV +TL +G SSPM
Sbjct: 298 NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338
Query: 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392
SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339 SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398
Query: 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 452
VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399 VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458
Query: 453 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512
ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459 ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518
Query: 513 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 572
LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +
Sbjct: 519 LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577
Query: 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632
S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578 -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636
Query: 633 VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 675
V ANEN IKI L + E++S DA+ S+ + K +NP+ + + A
Sbjct: 637 VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695
Query: 676 GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 732
+N D + D+KP IS E+ +KS++ K PS C+SL LP + KIS
Sbjct: 696 SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755
Query: 733 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792
RL Y N G AI ALASN +HL+W+W RND S +AT VPP+L+QP G M ND D
Sbjct: 756 RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814
Query: 793 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 852
+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815 NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874
Query: 853 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912
IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG D QIFVW+ DGW
Sbjct: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934
Query: 913 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 971
Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP +
Sbjct: 935 EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994
Query: 972 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1031
+ PIS ATFSCD ++F SF+D T+ + ASNL ++CRI +AYL S ++ P IA
Sbjct: 995 AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIA 1054
Query: 1032 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
AHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1055 AHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/1141 (54%), Positives = 782/1141 (68%), Gaps = 101/1141 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239
Query: 219 QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 260
Q T +P + W + + + +AVS A+ L P+ A ++D P
Sbjct: 240 QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299
Query: 261 DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 314
DSD +++++ P+ I +E + T+PG + Q+F
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342
Query: 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 374
D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD LW+V S ++L RNFKVWD+
Sbjct: 343 DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401
Query: 375 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 434
ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402 SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461
Query: 435 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 494
VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI
Sbjct: 462 VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521
Query: 495 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554
FIFS ++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581
Query: 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614
NESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ VQLLTT+DA G
Sbjct: 582 NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639
Query: 615 GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 666
GLP +PRI FNK+GTLLAV ANEN IKIL + NS+ A S+ L K ++
Sbjct: 640 GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699
Query: 667 NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 708
NPI S V AG+ + ++ DVKP IS E+ +KS++ K
Sbjct: 700 NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754
Query: 709 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 768
S+C+SL LP V+ KISRL Y N G AI ALASN +HL+W+W RN+ S +A
Sbjct: 755 TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814
Query: 769 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 828
T + P+L+QP G M ND DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815 TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873
Query: 829 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 888
T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL F
Sbjct: 874 TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933
Query: 889 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 948
S LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+V
Sbjct: 934 SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993
Query: 949 HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007
HET LAIYEA +L LKQWFP SS PIS ATFSCD ++VF SF+D T+ + ASNL ++
Sbjct: 994 HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053
Query: 1008 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1067
CRI ++YL P + ++ P IAAHP +P QFA+GL++G V+V EP E W V PP
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112
Query: 1068 E 1068
E
Sbjct: 1113 E 1113
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/1140 (54%), Positives = 777/1140 (68%), Gaps = 97/1140 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 224
NWQH C NP+PNPDI TLFVDH C + G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239
Query: 225 -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 260
+ W + + + +AVS A+ L P+ ++D P
Sbjct: 240 QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299
Query: 261 DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 311
DSD +++++ P+ I +E V T+PG N PD P
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344
Query: 312 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 371
PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG LW+V S +KL RNFKV
Sbjct: 345 ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399
Query: 372 WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 431
WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400 WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459
Query: 432 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491
DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460 DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519
Query: 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551
NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520 NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579
Query: 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611
VEWNESEGA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ +QLLTT+D
Sbjct: 580 VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637
Query: 612 AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 662
A GGLP +PRI FNK+GTLLAV AN+N IKI L T E+NS+ A S+ +
Sbjct: 638 ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696
Query: 663 KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 710
K ++N +S+ A +N D + DVKP IS EA +KS++ K
Sbjct: 697 KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756
Query: 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 770
PS C+SL LP V+ NKISRL Y N G AI ALASN +HL+W+WPRN+ S +A
Sbjct: 757 INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816
Query: 771 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 830
VP +L+QP G M ND DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817 SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875
Query: 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890
T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS
Sbjct: 876 TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935
Query: 891 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950
LN+LVSSG DAQI VW+ DGW Q R LQ P G A S+T +QFH+DQ +FL+VHE
Sbjct: 936 VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995
Query: 951 THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1009
T LAI+EA +L CLKQW P SS PIS ATFSCD ++++ SF+D T+ + ASNL ++CR
Sbjct: 996 TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055
Query: 1010 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
I AYL + S +V P IAAHP + QFAVGL++G V+V EP E W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1178 bits (3048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1130 (54%), Positives = 770/1130 (68%), Gaps = 77/1130 (6%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA N+ELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY D SAR M++ELK++IEANP+ KL+FP++K RLR LINQSL
Sbjct: 121 LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 224
NWQH C NP+PNPDI TLFVDH C QL G ++ PP P
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239
Query: 225 -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 261
+ W + + + VS A+ L P+ A ++D P D
Sbjct: 240 QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299
Query: 262 SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 320
SD +S+++ P+ + +E V + P Q+F D PKT
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350
Query: 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 380
+TL +G SSPMSMDFHPVQ TLLLVGTNVGD LW+V S ++L +RNFKVWD+ ACSM
Sbjct: 351 MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409
Query: 381 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 440
F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410 FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469
Query: 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500
LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470 LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529
Query: 501 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560
+DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589
Query: 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620
+KRTYQG + S+ V FDT K++ LAAGDD IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590 VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647
Query: 621 RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 672
RI FNK+G LLAV A EN IKIL + NS+ S+ + K ++NPIS
Sbjct: 648 RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707
Query: 673 TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 719
A + G ++N D + DVKP IS E+ +KS++ K PS+C+S
Sbjct: 708 AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767
Query: 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779
L LP V+ NKISRL Y N G AI ALASN +HL+W+W RND + +A+ V P+L+QP
Sbjct: 768 LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827
Query: 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 839
G M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P
Sbjct: 828 SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886
Query: 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 899
A LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GH+KR+TGL FS LN+LVSSG
Sbjct: 887 ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946
Query: 900 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959
DAQI VW+ DGW Q R LQ P G A ++T +QFH+DQ RFL+VHET LAIYEA
Sbjct: 947 ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006
Query: 960 ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1018
+L CLKQWFP SS PIS ATFSCD ++++ SF+D T+ + SNL +QCRI +AYL
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066
Query: 1019 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
+ S +V P IAAHP +P QFAVGL++G V+V EP E W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/1131 (54%), Positives = 777/1131 (68%), Gaps = 94/1131 (8%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP++K N SL
Sbjct: 121 LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171
Query: 175 NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C G ++ PP
Sbjct: 172 NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231
Query: 219 QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 260
Q T +P + W + +T AVS A+ L P+ A + P
Sbjct: 232 QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291
Query: 261 DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 318
DSD LS+++ P+ I +E N+P + P S Q+F ++ D PK
Sbjct: 292 DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337
Query: 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 378
TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338 TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396
Query: 379 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 438
M + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
Query: 439 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 498
ND+AFS P KQ+ VITCGDDKTIKVWDA G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516
Query: 499 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558
++DGKIKAWLYD+LG+RVDY+APG CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576
Query: 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 618
GA+KRTYQG + + S+ VV FDT K++ LAAGDD IK WDM+ VQLLT+IDA GGLP
Sbjct: 577 GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634
Query: 619 NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 670
+PRI FNK+G LLAV N+N IKIL T + N A S+N K +++PIS
Sbjct: 635 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693
Query: 671 -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 716
T AG+A+ + S+ P DVKP I+ E+ +KS+V K + P++
Sbjct: 694 AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753
Query: 717 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 776
C+SL LP ++A KISRL + N G AI ALASN +HL+W+W R + S +AT V P+L
Sbjct: 754 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813
Query: 777 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 836
+QP G M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814 WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872
Query: 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 896
P AT LAF+P DNN+IAIGMDDS+I IYN R EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932
Query: 897 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 956
SSG D+Q+ VW DGW Q R LQ P G A S+T +QFH+DQ FL+VHET LAI+
Sbjct: 933 SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992
Query: 957 EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1015
E +L C+KQW P SS PI+ ATFSCD ++V+ F+D T+ + A+NL+++CRI +AY
Sbjct: 993 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052
Query: 1016 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1066
L P +V+P IAAHP +P +FA+GL++G V+V EP E W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/1126 (54%), Positives = 773/1126 (68%), Gaps = 87/1126 (7%)
Query: 1 MSKLNKDLVFLILQFLNEEGFTESAHI------FYFDMKFFEDMILDGKWEDVEQYLSSF 54
MS L+++LVFLILQFL+EE F E+ H F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 55 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 114
TKVDDNRYS KI+FEIRKQ + EALD HD KA+ IL KDLK F+ NEELFKE+ QLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 115 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 174
L++ R++E LSKY GD SAR M++ELK++IEANP+ + KL+FP+++ RLR LINQSL
Sbjct: 121 LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179
Query: 175 NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 218
NWQH C NP+PNPDI TLFVDH C+L G ++ PP
Sbjct: 180 NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239
Query: 219 QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 260
Q T SP + W S S + AVS A++L + PTN AV D P
Sbjct: 240 QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297
Query: 261 -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 308
DSD +S+++ P+ I +E + V T+PG + + +PD
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342
Query: 309 GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 368
D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 343 ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395
Query: 369 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 428
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 396 FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455
Query: 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515
Query: 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548
KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516 YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575
Query: 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 608
SF+VEWNESEGA+KRTYQG S+ VV FDT K++ LAAGDD IK WDM+ +QLLT
Sbjct: 576 SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633
Query: 609 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 667
IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++N
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693
Query: 668 PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 724
I +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 694 SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753
Query: 725 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 784
++A KISRL + N G AI ALASN +HL+W+W RND + +AT VPP+ +QP G
Sbjct: 754 NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812
Query: 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 844
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813 LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
Query: 845 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904
F+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873 FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932
Query: 905 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 964
VW+ DGW Q + LQ P G T A S+T +QFH+DQ FL+VHET LAIYE +L C+
Sbjct: 933 CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992
Query: 965 KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1022
KQW P+ SS PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 993 KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051
Query: 1023 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1052 SNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1086 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.739 | 0.716 | 0.559 | 1.3e-310 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.795 | 0.763 | 0.537 | 1.1e-309 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.621 | 0.596 | 0.481 | 3.9e-258 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.323 | 0.474 | 0.361 | 1.9e-82 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.559 | 0.445 | 0.239 | 4.7e-17 | |
| MGI|MGI:1918511 | 476 | Poc1b "POC1 centriolar protein | 0.231 | 0.527 | 0.242 | 3.4e-14 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.188 | 0.665 | 0.243 | 8.3e-14 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.188 | 0.567 | 0.247 | 1.1e-13 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.188 | 0.613 | 0.243 | 1.2e-13 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.188 | 0.613 | 0.243 | 1.5e-13 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2337 (827.7 bits), Expect = 1.3e-310, Sum P(2) = 1.3e-310
Identities = 463/827 (55%), Positives = 589/827 (71%)
Query: 249 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 307
P+N AV D P DSD +S+++ ++++ S GV++ +P P + Q+
Sbjct: 288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337
Query: 308 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 367
F D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L +
Sbjct: 338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394
Query: 368 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 427
FKVWD+ CSM + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct: 395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454
Query: 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487
LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct: 455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514
Query: 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547
H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG CT MAYSA+G RLFSCGTSK+G
Sbjct: 515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574
Query: 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 607
ESF+VEWNESEGA+KRTYQG + S+ VV FDT K++ LAAGDD IK WDM+ +QLL
Sbjct: 575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632
Query: 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 666
T IDA GGL +PRI FNK G+LLAV AN+N IK++ + + LS K ++
Sbjct: 633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692
Query: 667 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 723
N I V +N D + DVKP I+ E+ +KS+V K PS+C+SL LP
Sbjct: 693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 724 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 783
++ KISRL + N G AI ALASN +HL+W+W RND + +AT +PP+ +QP G
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 784 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 843
M ND ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct: 813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 844 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 903
AF+P DNN+IAIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 904 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 963
+ VW+ DGW Q + LQ P G T + S+T +QFH+DQ FL+VHET LAIYE +L C
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 964 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1021
+KQW P+ S+ PI+ ATFSCD ++++TSF+D T+ + ++NL ++CR+ +AYL + S
Sbjct: 992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050
Query: 1022 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068
+V+P IAAHP + FAVGL++G V++ EP E W V PP E
Sbjct: 1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2335 (827.0 bits), Expect = 1.1e-309, Sum P(2) = 1.1e-309
Identities = 481/895 (53%), Positives = 609/895 (68%)
Query: 217 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 271
P Q T SP + W S S + AVS A++L P+ A + P +
Sbjct: 238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296
Query: 272 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 328
+E S T P G+S + N+ + P S + S + D PKTVA+TL +GS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 388
S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L + FKVWD+ CSM + ALV++
Sbjct: 357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 448
P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 449 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508
Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 509 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568
LYD++G+RVDYDAPG CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 569 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628
+ S+ VV FDT K++ LAAGDD IK WDM+ VQLLT ID GGL +PRI FNK G
Sbjct: 596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653
Query: 629 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 682
+LLAV NEN IKI+ + + +S K ++N I+ T AG A+ S
Sbjct: 654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713
Query: 683 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 733
+V N D + DVKP I+ E+ +KS++ K + PS+C+SL LP ++ KISR
Sbjct: 714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773
Query: 734 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 793
L + N G AI ALASN +HL+W+W RN+ + +AT +PP+ +QP G M ND ++
Sbjct: 774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832
Query: 794 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 853
N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct: 833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892
Query: 854 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913
AIGMDDSTI IYN R EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW
Sbjct: 893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952
Query: 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 973
Q + L P G APS+T +QFH+DQ FL+VHET LAIYE +L C+KQW S+
Sbjct: 953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012
Query: 974 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1032
PI+ ATFSCD ++V+ SF+D T+ + ++NL ++CR+ +AYL + S +V+P IAA
Sbjct: 1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAA 1072
Query: 1033 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1085
HP +P FAVGL++G V++ EP E W V PP E PT+ S G A D
Sbjct: 1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1620 (575.3 bits), Expect = 3.9e-258, Sum P(2) = 3.9e-258
Identities = 339/704 (48%), Positives = 456/704 (64%)
Query: 28 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKA 87
F+F++K+FE+ L G+W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EALD +D AKA
Sbjct: 34 FFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKA 93
Query: 88 LNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIE 147
+ IL KDLK FA NEEL+KE+ QLLTL++ R++E LSKY GD SAR M ELK++IE
Sbjct: 94 VEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKY-GDTKSARSIMYTELKKLIE 152
Query: 148 ANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQ------- 200
ANP+ + KL FPS K RLR LINQSLNWQH C NP+PNPDI TLF+DH C
Sbjct: 153 ANPLFREKLAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARA 212
Query: 201 LQETDF--SGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL---SLSDPTNKAVT 255
L + + + SN +P P N + + ++ ++A S S P+
Sbjct: 213 LTPVNLPVAAVARPSNFVPLGVHGGPFQSNPAPAPNANALAGWMANPNPSSSVPSGVVAA 272
Query: 256 MDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMF---QSFGETS 312
P ++E R + + Y + + + E+ S S
Sbjct: 273 SPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPAS 332
Query: 313 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 372
D P+ V T+ +GS +SMDFHP HTLL VG + G+ LW+V S +K+ FK+W
Sbjct: 333 LDDLPRNVVSTIRQGSVV-ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIW 391
Query: 373 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 432
++ ACS++F+ ++V++P +SV RV WSPDG+LLGV+++KH++ +YAY G SD RQ LEID
Sbjct: 392 NMAACSVIFQGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEID 450
Query: 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 492
AHVG VNDLAF+ P KQ+ V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KEN
Sbjct: 451 AHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKEN 509
Query: 493 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552
I FIFS ++DGKIKAWLYD++G+RVDYDAPG CT M YSA+G RLFSCGTSKEG+SFLV
Sbjct: 510 IQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLV 569
Query: 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612
EWNESEGA+KRTY G + + S VV FDT +++ LA G+D+ IK W+M+ LLT ++A
Sbjct: 570 EWNESEGALKRTYLGFRKK--SAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEA 627
Query: 613 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN-PIS 670
GGLP PR+ FNK+G LLAV +N KIL + ++ A S K S++ +S
Sbjct: 628 EGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVS 687
Query: 671 TVTGAGIANGSVSVNE--DPKEDVKPEI---SVEAENKSEVEKP 709
T A + ++ E D +P +EA +++ +EKP
Sbjct: 688 TSAMASSISPAIGKIEHMDAGSPARPTPIPNGIEAMSRT-MEKP 730
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 1.9e-82, Sum P(2) = 1.9e-82
Identities = 132/365 (36%), Positives = 198/365 (54%)
Query: 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 773
PS+C +L+LP KI+RLTY+ G I ALA + H +W W + E
Sbjct: 375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433
Query: 774 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 833
PRL+QP+ G + M N+ S Q++ CFA+ +YLFS SGG I+++ + F+ + +
Sbjct: 434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489
Query: 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 893
P+P AT F P D ++A+G+DD +I I+ S +V KLEGH +++T L FS N
Sbjct: 490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547
Query: 894 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 950
+LVSS D ++ +W W T + S + L + THIQF Q L+VH+
Sbjct: 548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607
Query: 951 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1009
+ +YE L C QW P +S P I+ AT+S D +++ F G++ I ++ C+
Sbjct: 608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667
Query: 1010 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1067
I T++ + +TS L VYP +AAHP P Q + GL+NG+V V++P G W P
Sbjct: 668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726
Query: 1068 EIVGD 1072
E GD
Sbjct: 727 EDNGD 731
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 168/701 (23%), Positives = 298/701 (42%)
Query: 294 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 351
+SP+ S+ + +F ++ + +S PK V QT S+ +++ H PV+ +
Sbjct: 711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765
Query: 352 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411
+G +D K+WD A L +T L G +V + +SPDG LL
Sbjct: 766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813
Query: 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471
+ + L+ G + Q E H ++ +AF+ K+++ + DD TIK+WD TG
Sbjct: 814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868
Query: 472 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 528
+ + H V S+ P K + S S+D IK W + + G G +
Sbjct: 869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922
Query: 529 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 587
+A+S +G++L S G+ K WN + G + +T +G SV V F Q+
Sbjct: 923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975
Query: 588 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 645
++ D IK+W+ +L T G L + F+ +G L +++N IK+ L T
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033
Query: 646 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK--- 693
E S SV A D+ + S + ST+ A G + E + V+
Sbjct: 1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093
Query: 694 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 749
P+ + A N + L+ P E Q L +++ + + ++ G+ + + +
Sbjct: 1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149
Query: 750 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 802
+W +L + E + ++ ++ P G D + E + F
Sbjct: 1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209
Query: 803 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 852
A S + L S+S G I L+ +T + + T+ P +A S+AF+P N +
Sbjct: 1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269
Query: 853 IAIGMDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDV 909
++ + D+ I ++ + E++ L+GHSK V TG S L+ + + +I +W
Sbjct: 1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLP 1325
Query: 910 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950
+ C S+ DGV+ L S + F + RFL+ E
Sbjct: 1326 QSYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362
|
|
| MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 64/264 (24%), Positives = 108/264 (40%)
Query: 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480
G D + H + FS CKQI+ T D + +W +R Y + GH
Sbjct: 4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61
Query: 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540
V SL + N+ + S S D ++ W+ D G ++ A + +SA+G+ L
Sbjct: 62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118
Query: 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600
T+ E +S V W+ +R L + V F I++ +D IKIWD
Sbjct: 119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172
Query: 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 660
Q + G + FN NGT +A +++ +KI + + + V S
Sbjct: 173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230
Query: 661 LRKLSVNPISTVTGAGIANGSVSV 684
+ LS +P+ ++G+V +
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKM 254
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 54/218 (24%), Positives = 104/218 (47%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ + +
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
++ DDKT+KVW+ TG + +GH Y C + + I S S D ++ W
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240
Query: 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.5406 | 0.9631 | 0.9339 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_XVIII1717 | hypothetical protein (1109 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1086 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 1e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)
Query: 325 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 383
++G + + F P L TG D KVWD+ +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45
Query: 384 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 443
L V V S DG+ L S ++L+ G R + H V+ +AF
Sbjct: 46 TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101
Query: 444 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 503
S P +I + + DKTIKVWD TG + GH V S+ + F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157
Query: 504 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561
IK W D + G +A+S +G +L S + G L W+ S G
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211
Query: 562 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620
T +G H N V+ V F + + +D I++WD+ + + T+ N
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263
Query: 621 --RICFNKNGTLLAVIANENRIKI 642
+ ++ +G LA + + I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.0 bits (219), Expect = 2e-18
Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)
Query: 285 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 344
G SL ++ S SS + + S P + L S S+ F P LL
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80
Query: 345 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 403
L G++ G LWD+++G+KL +L SV+++ SPDG+
Sbjct: 81 LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123
Query: 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463
+ +A S + + + + ++ H +V LAFS P ++ D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182
Query: 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 523
WD TG + GH PV SL + S S DG I+ W + +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 583
++S +G L S + + + + S L +SV V F
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295
Query: 584 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 642
+ + D +++WD+ +LL+++ G + F+ +G+LL +++ I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Query: 643 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697
+ + S N+ +S +P V +G +G+V + + + +
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)
Query: 799 VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 857
V C A S + L + SG G I ++ + T + + T+ + +A + D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 858 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 917
D TI +++ + E + L GH+ V+ + FS IL SS D I VWDV+ T
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125
Query: 918 RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 969
+ L T D V ++A S F +D T + +++ C+
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174
Query: 970 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002
+ ++ FS D + +S DGT+ + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 796 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854
V A S + L S+S I ++ V T K + T+ + S+AF+P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 855 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 913
D TI +++ R+ + ++ L GH+ V + FS L+SS D I +WD+ G
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 970
+ T R +GV ++A S +LL + + +++ C++
Sbjct: 212 LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259
Query: 971 SSVPISQATFSCDCRMVFTSFVDGTLSI 998
+ ++ +S D + + + DGT+ I
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-12
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 28 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 86
+ + K ++IL G W++ ++LSS R S K+ FE+RKQ F E + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 796 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854
V A S + L S+S G I L+ + T K + T+ S+AF+P + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 855 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908
G +D TI +++ R+ E + L GH+ VT L +S L S D I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (155), Expect = 2e-10
Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)
Query: 426 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 483
L + H ++ +AFS P ++ +++ D TIK+WD G + H + V
Sbjct: 56 LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113
Query: 484 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541
L + + + + S +DG +K W L + T +A+S +G+ L S
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 600
+ + W+ G T G + VS + F I + D I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 659
++ +LL + +G ++ F+ +G+LLA +++ I++ + S+S+ S
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 660 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719
++ ++ +P + +G ++G+V + + + ++++
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328
Query: 720 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 778
+S L+++ +G + + +G +W + E
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368
Query: 779 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 837
V + S + + S S G + L+ + T + + +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
Query: 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876
TSL F+P D +A G D+TI +++ ++S
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 3e-10
Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)
Query: 805 SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 863
+ S+ G + L+ + T K I T+ S + TSLAF+P + + D TI
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 864 IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 921
+++ R+ + +S L GH+ V+ L FS D ++ S D I +WD+ +++ S
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241
Query: 922 TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 980
+ V + F D + + +++ + L + S + F
Sbjct: 242 SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 981 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1022
S D +++ + DGT+ + + ++ + + P +S
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 4e-10
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)
Query: 799 VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 856
V A S + L ++ G I L+ + T K + + + + +F+P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259
Query: 857 MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 915
D TI +++ RS S ++ L GHS V + FS +L S D + +WD++ +
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319
Query: 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 975
+ +L+ +G + + F D + + I + T +
Sbjct: 320 SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373
Query: 976 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1013
+FS D R+V + DGT+ + + S + +
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.3 bits (147), Expect = 2e-09
Identities = 80/389 (20%), Positives = 150/389 (38%), Gaps = 16/389 (4%)
Query: 527 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 586
T +A+S +G L S + G L + + E IK + +++ D
Sbjct: 69 TSIAFSPDGELLLSGSSD--GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 587 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILET 645
+ ++ D +K+WD++ L G + F+ +G LLA ++ + IK+ +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS-LAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 646 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705
+ +D + L+ +P + A ++ D ++ + S
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 765
V F+ L S ++ L ++ + S+ V + P L S
Sbjct: 246 V--SSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301
Query: 766 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLYI 823
+ V RL+ G T + V + S + + L S G I L+
Sbjct: 302 GSSDGTV--RLWDLETGKLLSS--LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
Query: 824 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 883
+ T K + T+ S S++F+P D V++ G D T+ +++ + ++ L+GH+ RV
Sbjct: 358 LRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415
Query: 884 TGLVFSDALNILVSSGGDAQIFVWDVDGW 912
T L FS L S D I +WD+
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 2e-07
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)
Query: 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 381
+TL SSS +S+ F P LL G++ G LWD+ +G+ L K
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325
Query: 382 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 440
V+ + +SPDGSLL S ++L+ + L+ NV
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375
Query: 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500
++FS + +S + D T+++WD TGS + +GH + V SL + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431
Query: 501 VDGKIKAWLYDSLGARVDYDAPG 523
D I+ W + V + G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 584
G T +A+S +G+ L + + W+ G + RT +G V V
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63
Query: 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 643
+ + D I++WD+ + + T+ G + F+ +G +L+ + + IK+
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684
+ + +D + ++ +P T + +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935
L+GH+ VT + FS +L + GD I VWD++ + T V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56
Query: 936 IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 990
+ D T +++ E C++ +SSV FS D R++ +S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111
Query: 991 FVDGTLSIHE 1000
D T+ + +
Sbjct: 112 SRDKTIKVWD 121
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)
Query: 315 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 369
D T + G + S+ F P T + + G LWD+ +G+ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177
Query: 370 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405
K+WD+ S +R VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465
++++ G + H +V LA+S K+ + + D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 869 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908
S E++ L+GH+ VT + FS L S D I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 871 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908
+++ L+GH+ VT + FS N+L S D + VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 426 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465
+ + H G V +AFS + + DD T++VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 843 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 894
+AFNP D + +D TI+ + S+ I L+GH+K+V + F A+N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 895 LVSSGGDAQIFVWDVD 910
L S+G D + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465
+ H G V +AFS K + + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1086 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.7 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.63 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.56 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.54 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.51 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.49 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.48 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.46 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.42 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.36 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.35 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.35 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.34 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.34 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.32 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.32 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.26 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.11 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.02 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.0 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.96 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.96 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.92 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.9 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.88 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.86 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.86 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.85 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.81 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.79 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.77 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 98.72 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.7 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.69 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.68 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.66 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.64 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.63 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.6 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.59 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.58 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.57 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.56 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.56 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.54 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.52 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.52 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.52 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.51 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.49 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.49 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.46 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.4 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.39 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.38 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.36 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.19 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.19 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.17 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.17 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.16 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.07 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.02 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.0 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.99 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.97 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.96 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.95 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.93 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.9 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.89 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.89 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.88 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.86 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.83 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.8 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.79 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.74 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.7 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.68 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.61 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.57 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.55 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.53 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.43 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.42 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.33 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.26 | |
| PRK10115 | 686 | protease 2; Provisional | 97.23 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.19 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.19 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.05 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.05 | |
| PRK10115 | 686 | protease 2; Provisional | 97.05 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.01 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.01 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.94 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.94 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.88 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.84 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.84 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.78 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.76 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.7 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.69 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.61 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.6 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.57 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.56 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.54 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.5 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.44 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.42 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.4 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.39 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.35 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.35 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.31 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.27 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.12 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.06 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.86 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.71 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.63 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.6 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.59 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.55 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.53 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.49 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.47 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.27 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.23 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.22 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.12 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.98 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.97 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.96 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.72 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.66 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.36 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.35 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 94.34 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 94.26 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 94.17 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.16 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 94.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.03 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.89 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.86 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.82 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.62 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 93.32 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.31 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.24 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.16 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.08 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.03 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 92.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.8 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.71 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.62 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.6 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.5 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 92.45 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.66 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.48 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 91.37 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.2 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.2 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.99 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.84 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.84 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.72 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.69 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.45 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.36 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 90.35 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.25 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 90.19 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.12 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.02 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 89.57 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.5 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.48 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.21 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.14 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.92 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.56 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.4 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.23 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 87.69 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.58 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.52 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.36 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 87.34 | |
| PLN02193 | 470 | nitrile-specifier protein | 87.13 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.07 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.04 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 86.83 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 86.74 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.07 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 86.03 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.9 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 85.51 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 84.9 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 84.9 | |
| PLN02153 | 341 | epithiospecifier protein | 84.52 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 84.08 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.92 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 83.73 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 83.39 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 82.98 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 82.74 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=539.18 Aligned_cols=487 Identities=20% Similarity=0.301 Sum_probs=413.0
Q ss_pred hHHHHHHHHHhhhccCchhhhhh---------ccccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhh
Q 001396 5 NKDLVFLILQFLNEEGFTESAHI---------FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 75 (1086)
Q Consensus 5 ~~evvrli~q~L~~~G~~~s~~~---------~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 75 (1086)
+.|++|++.|+|+++||..|+.+ .+.+++.|.++|++|+|+.++..+..+ .+++.+...++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 46999999999999999999887 678899999999999999999999888 45555555569999999999
Q ss_pred hhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001396 76 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 155 (1086)
Q Consensus 76 ~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 155 (1086)
||++..|....|+.+||+.+.++. ...+++++|+.-|..++-....+... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999999986 58889999998887655333333222 112357899999999999999999
Q ss_pred ccCCCCCchHHHHHHHHhHHhhhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccc
Q 001396 156 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 235 (1086)
Q Consensus 156 ~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 235 (1086)
+|++||+.||+||++||+++|.||| ..+..|||.||.|++ .++ |+++.
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------p~qt~-------------- 217 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------PSQTW-------------- 217 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC------Cchhh--------------
Confidence 8999999999999999999999999 556689999999988 553 44443
Q ss_pred CccccccccCCCCCCcccccccCCCCCcccccCCccccCCCCCCcccccCcCCCCCCCCCCCCccccccccccCCCccCC
Q 001396 236 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 315 (1086)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~~ 315 (1086)
T Consensus 218 -------------------------------------------------------------------------------- 217 (519)
T KOG0293|consen 218 -------------------------------------------------------------------------------- 217 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
++|..|+++||.+.||++|+| ||+++.|.+..||++.....+.- ...+.||..+|..
T Consensus 218 ------qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 218 ------QILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY 274 (519)
T ss_pred ------hhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence 447899999999999999996 99999999999999876554221 1238899999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+.||||.+||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..||+ .|..+..+
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~W 349 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGNW 349 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-Ccchhhcc
Confidence 9999999999999999999999999998776432 24678999999999999 7999999999999995 55656666
Q ss_pred ecCC-cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 476 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 476 ~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
++-. ..|.++++ ..||+++++.+.|..|++++.++...+.. .....+|++.+.|.|++++++.-. +..+.+|
T Consensus 350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 5543 55888888 55889999999999999999887665543 345568999999999999988765 5569999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV 633 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 633 (1086)
|++....++.+.||.....-|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.. .|++++|+| +...+|+
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS 500 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence 9999999999999986666677665556678999999999999999999999999998864 599999999 5678999
Q ss_pred EECCCcEEEEECCC
Q 001396 634 IANENRIKILETPE 647 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~ 647 (1086)
+++||+|+||-...
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999997653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=501.75 Aligned_cols=577 Identities=18% Similarity=0.253 Sum_probs=495.3
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCcee-eeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
++||++|+ +|++... ..|.+-|+.+++.. +. .-......+++++.+||+.+|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5887764 45889999999873 21 1234567899999999999999999999
Q ss_pred EEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC
Q 001396 413 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
.+++|++.+|+.++ .++. |++||.-++|+|.|. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998887 4555 999999999999997 89999999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 570 (1086)
+...|++|..|+++++||+..... ...+..|...|++++|++|+..+++++. +..+.+||+.+-+..+++...+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999996554 6788889999999999999999999987 7789999998777777776644
Q ss_pred cCCceEEEEEecC-----CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 571 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 571 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
.+.++.+-++ +.+++++|.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus 235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence 6777888777 6799999999999999999998887665443 233666666666667777788899999999
Q ss_pred CCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCc
Q 001396 646 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 725 (1086)
Q Consensus 646 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 725 (1086)
++.+....+-|..+.|..+.|- .|+.+.++.++..+.+|+++.. ...|.. + .
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~i--i--~ 362 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQI--I--P 362 (775)
T ss_pred cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEE--E--e
Confidence 9999999999999999888876 5778899999999999999654 334442 2 4
Q ss_pred ccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee
Q 001396 726 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 805 (1086)
Q Consensus 726 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s 805 (1086)
+|...|.++....+|-.+++++.|..+++|.++.+.... ... -...+|.+.|.+++++
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--------------------~~~--a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--------------------LCV--AQANGHTNSVGAVAGS 420 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--------------------hhh--hhhcccccccceeeec
Confidence 599999999988888899999999999999884332100 000 1112599999999998
Q ss_pred cCC-CEEEEEe-CCeEEEEEccCceE-----E----EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001396 806 KND-AYLFSAS-GGVISLYIVMTFKT-----I----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 806 ~dg-~~l~~~~-dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 874 (1086)
..+ .++++++ |+++++|++...+. . .+...|...|+|++++| +.+++|||+.|++.+||+++.+....
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 765 5677777 89999999976221 1 12346899999999999 89999999999999999999999999
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeE
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 953 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i 953 (1086)
++.||+..|+++.|+|..+.++|+|.|++|+||.+++ ..|+++++||.. .|..+.|-.+|+.|++ +.||-+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence 9999999999999999999999999999999999998 558999999987 8999999999999999 799999
Q ss_pred EEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 954 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
++|++++++|... +..|..+|+++.-++++.+++||+.||.|.+|.=.+.
T Consensus 572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999998 7789999999999999999999999999999975543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=439.55 Aligned_cols=483 Identities=19% Similarity=0.272 Sum_probs=395.1
Q ss_pred hHHHHHHHHHhhhccCchhhhhh----------ccccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhh
Q 001396 5 NKDLVFLILQFLNEEGFTESAHI----------FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 74 (1086)
Q Consensus 5 ~~evvrli~q~L~~~G~~~s~~~----------~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 74 (1086)
..+|||||.|||+|+.++++.++ ..+.++.|-+.|.+|+||.+++.++++ ++|++ -+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 45899999999999999999888 567899999999999999999999999 89887 457899999
Q ss_pred hhhhcCCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHHhcccccccccccccccCCC-hHHHH-HHHHHHHhhcccCc
Q 001396 75 FFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDA-LSARK-NMMLELKQIIEANP 150 (1086)
Q Consensus 75 ~~Ell~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~-~~~r~-~l~~~l~~~~~~~~ 150 (1086)
.+||+|.++...|..+||.- +.-|.+.++++|.+|..||..+.++..+. |++. ++.|+ .+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea----Y~dssKEkrRa~IAQ~ls~EV~V-- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA----YGDSSKEKRRAVIAQALSGEVHV-- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh----cCcchHHHHHHHHHHHhcCceEE--
Confidence 99999999999999999973 55566779999999999999988887766 5443 34444 444466555544
Q ss_pred cccccccCCCCCchHHHHHHHHhHHhhhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 001396 151 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS 230 (1086)
Q Consensus 151 ~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 230 (1086)
+||+||+.||.|||+||+.+-+.+. . .+| .-|+....
T Consensus 155 ----------VppSRLlaLlGQaLKWQqHQGLLPP---G------------------t~i-----DLFRGkAA------- 191 (508)
T KOG0275|consen 155 ----------VPPSRLLALLGQALKWQQHQGLLPP---G------------------TTI-----DLFRGKAA------- 191 (508)
T ss_pred ----------cChHHHHHHHHHHhhhHhhcCCCCC---C------------------cee-----eeccchhh-------
Confidence 8999999999999999998654331 0 000 11111110
Q ss_pred CCcccCccccccccCCCCCCcccccccCCCCCcccccCCccccCCCCCCcccccCcCCCCCCCCCCCCccccccccccCC
Q 001396 231 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 310 (1086)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~ 310 (1086)
.-...|..||.+..
T Consensus 192 --------------------------------------------~K~~~Ee~~Pt~l~---------------------- 205 (508)
T KOG0275|consen 192 --------------------------------------------MKDQEEERYPTQLA---------------------- 205 (508)
T ss_pred --------------------------------------------hhhhHhhhchHHhh----------------------
Confidence 00112234555542
Q ss_pred CccCCCccceeeeec-cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC
Q 001396 311 TSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 389 (1086)
Q Consensus 311 ~~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 389 (1086)
+.++ |.++.+.|..|||||+| |++|+.||.|.+||..+|+..+...++.- .-+--+
T Consensus 206 -----------r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAq-----------d~fMMm 262 (508)
T KOG0275|consen 206 -----------RSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-----------DNFMMM 262 (508)
T ss_pred -----------hheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhh-----------cceeec
Confidence 2222 55668999999999996 99999999999999999998875443311 114457
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
..+|.|+.||.|...||+|+.||.|+||.+.+|.|++... .+|+..|+|+.||.|+. .+++++.|.++++.-+++|
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence 8999999999999999999999999999999999998532 38999999999999999 6999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC--ceEEEEEec-CCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~-d~~~l~~~~~~~~ 546 (1086)
++++.|+||...|+...| .+||..+++++.||+|++|+..+.++..++...+. +|.++..-| +...++.|..
T Consensus 339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--- 413 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--- 413 (508)
T ss_pred hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence 999999999999999999 56889999999999999999999999887766543 677777766 4567777765
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
.+.+++.+++ |+.++.+.......+...+++.+|.|.++++.++|+.++.|.+.+|++..++..|.. .+..++-+|
T Consensus 414 -sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP 489 (508)
T KOG0275|consen 414 -SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP 489 (508)
T ss_pred -CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence 5579998874 778888876554556778888999999999999999999999999999999988754 478899999
Q ss_pred CCCEEEEEECCCcEEEEE
Q 001396 627 NGTLLAVIANENRIKILE 644 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~ 644 (1086)
..+++|+-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=430.08 Aligned_cols=576 Identities=15% Similarity=0.188 Sum_probs=462.2
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
.-+.-.|.|+.++.+.+ ..|.+-++++...... +.+|..+++-..|||.|-|+|+|...
T Consensus 22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence 34455688887777654 6788888877665433 78999999999999999999999999
Q ss_pred CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE-eCCCcEEEEeCCCCceeEEeecCCcceEEEeeccc
Q 001396 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 490 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 490 (1086)
|+|+|||....+.+. ..+++.-.++|.+++|+.|++++ +++| +.++-.+++-.++|..+-.+.||...|+++.|-|+
T Consensus 81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~RI-~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKRI-AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred CcEEEEeccCcceee-eeeeeecccccccceeCCCCcEE-EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 999999987744322 23567788999999999999962 3333 33444455555689999999999999999999776
Q ss_pred CCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001396 491 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570 (1086)
Q Consensus 491 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 570 (1086)
. .-++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++.+. |+.+++||-.+|+.+..+.....
T Consensus 159 R-PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 R-PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred C-ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 4 358999999999999987777777788889999999999999999999987 77899999999999999996666
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC-CCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 571 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|- ...|++.+.+|.|.+++.....
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 67999999999999999999999999999999999999997664421 12234444 5689999999999999999999
Q ss_pred eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCccccc
Q 001396 650 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 729 (1086)
Q Consensus 650 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 729 (1086)
.+..+.+|...|++++.+ +|++++++++.||.|.-|+...+... .+...+|..
T Consensus 312 ~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~n 364 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHTN 364 (603)
T ss_pred hhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----ccccccccc
Confidence 999999999999999996 78899999999999999998754433 223345899
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.|.+++.+..+. +++.+.|.++++.++..+...... . .+ ......+++..+|+.
T Consensus 365 qI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 365 QIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGG 418 (603)
T ss_pred eEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCC
Confidence 999999887666 788888888888776543221000 0 01 122334889999988
Q ss_pred EEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEeccccCCeEEEE
Q 001396 810 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLV 887 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~v~~l~ 887 (1086)
.++.+.++.|.+..-.++ +.... ..-...++|++| ++..+|+|+.||.|+||.+..+++. ..+..|.++|++++
T Consensus 419 ~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred EEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 888887766666542222 22222 345678999999 9999999999999999999876543 45667999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceec
Q 001396 888 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 966 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~ 966 (1086)
+|||+.+||++...+.+.+||+.+.+.... ...-|. ..|.+++|||+++++|+ +-|..|.||+++.......
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTN----RWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecc----eeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 999999999999999999999998764221 111122 37999999999999999 6899999999998777666
Q ss_pred cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 967 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 967 ~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
....|...|+.+.|-.+ ..|++.|.|..|++|++.
T Consensus 568 iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred eccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 67889888999999855 578889999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=465.78 Aligned_cols=550 Identities=14% Similarity=0.206 Sum_probs=461.5
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecC-CCccEEEEEECCCCCE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~ 404 (1086)
+-.+.+++++.+||+++ |++++...-+++|++.+|+.++. ++. |+.+|.-++|+|.|.+
T Consensus 60 ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~L 119 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTL 119 (775)
T ss_pred cchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCce
Confidence 55679999999999984 89999999999999999988764 334 9999999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEeecCCcceE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 483 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 483 (1086)
||+|+.|+.++|||+..+.+.. .|+||.+.|.++.|.|+-.+..|++|+.|+++++||+.++.. +..+..|.+.|+
T Consensus 120 lAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 120 LATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVT 196 (775)
T ss_pred EEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhhee
Confidence 9999999999999999987666 789999999999999998876899999999999999996654 889999999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC-----CCEEEEEeeCCCCceeEEEEeCCC
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
++++.+ |+..+++++.|..+.+||+...+...+.... ..+.++.+-++ |.++++.+. ++.+++||..+
T Consensus 197 sL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es 269 (775)
T KOG0319|consen 197 SLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSES 269 (775)
T ss_pred eeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecC----CceEEEEeccc
Confidence 999954 6789999999999999999655554444332 24566667666 668888875 77899999999
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE-ecCCCEEEEEECC
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANE 637 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~d 637 (1086)
++++....... ...+..+...+....++..+.|..+.++|.++.+....+-+. ...|..|.| .|+.++|+++++.
T Consensus 270 ~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 270 GKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY--NDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred chhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC--chhheeeeecCCccceEEEEeCC
Confidence 98877665543 234666777777778888899999999999999988887654 346888886 4678999999999
Q ss_pred CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccc
Q 001396 638 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 717 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 717 (1086)
+.+++|+..+..+. .+.+|.+.|.++... ..|-++++++.|.++++|.++.... .
T Consensus 346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~----------------------~~g~llat~sKD~svilWr~~~~~~--~ 400 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVW----------------------SSGDLLATGSKDKSVILWRLNNNCS--K 400 (775)
T ss_pred CceEEEecCCCceE-EEeCchhheeeeeec----------------------ccCcEEEEecCCceEEEEEecCCcc--h
Confidence 99999998887666 889999999988743 4577899999999999999832111 1
Q ss_pred cccccCCcccccceEEEEEecCCc-eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCC
Q 001396 718 QSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 796 (1086)
Q Consensus 718 ~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 796 (1086)
........+|.+.|.+++++..+. .+++++.|+++++|+++..+.... +. ..........|.
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~---------~~~~~~t~~aHd 463 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PI---------VLTCRYTERAHD 463 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------cc---------eehhhHHHHhhc
Confidence 111222357999999999987654 567788999999999987221000 11 111122233599
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 875 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 875 (1086)
..|.|++++|+.+++|+|+ |.+.+||+++.++...++.+|...|.|+.|+| ..+.+|++|.|++|+||.+.+..++.+
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeee
Confidence 9999999999999999999 89999999999999999999999999999999 889999999999999999999999999
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEE
Q 001396 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 954 (1086)
Q Consensus 876 l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~ 954 (1086)
|.||+..|..+.|-.+|+.|+|++.||.|++|++++++ |+..++.|.. .|.+++.++.+.++++ +.|+.|.
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEE
Confidence 99999999999999999999999999999999999955 7788888886 9999999999999988 6999999
Q ss_pred EEEcCC
Q 001396 955 IYEAEE 960 (1086)
Q Consensus 955 vwd~~~ 960 (1086)
+|.=.+
T Consensus 615 ~wkD~T 620 (775)
T KOG0319|consen 615 FWKDVT 620 (775)
T ss_pred EeecCc
Confidence 996443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=434.70 Aligned_cols=593 Identities=18% Similarity=0.298 Sum_probs=453.9
Q ss_pred ccCCCccceeeeec-cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 312 SFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 312 ~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.+.++.++...+|. .+...|++++.||+|. +|++....|...+-++.....++.++++
T Consensus 38 sv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~fk-------------------- 96 (893)
T KOG0291|consen 38 SVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNFK-------------------- 96 (893)
T ss_pred EEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEeec--------------------
Confidence 44555555666666 6777999999999997 5777778899999998888777765543
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|-..|.++.|+.|.+ ++++|+.|.++++|+
T Consensus 97 ~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFG 173 (893)
T ss_pred CccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEE
Confidence 789999999999999998654 699999764322 223345678999999999999999 899999999999999
Q ss_pred CCCCce--eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 466 AVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
++..+- .+.+.+|.+.|.++-|. .|...+++.+.||.+.+|.......... .... ..+|.--.-.-.
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~k--------d~eg~~d~~~~~ 242 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELD-KAEK--------DEEGSDDEEMDE 242 (893)
T ss_pred eccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccc-cccc--------cccccccccccc
Confidence 887665 67789999999988884 4566899999999999997764311110 0000 011100000000
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++++...-..|-.. .+.+-. .....+.+.+|++..+.|++|=..|.+.+|.+....+++.+..... .|..++
T Consensus 243 ~~Eek~~~~~~~k~----~k~~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~ 314 (893)
T KOG0291|consen 243 DGEEKTHKIFWYKT----KKHYLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVS 314 (893)
T ss_pred cchhhhcceEEEEE----Eeeeec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEE
Confidence 00100011122110 011111 1126799999999999999999999999999999999999986643 589999
Q ss_pred EecCCCEEEEEECC-CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 624 FNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 624 ~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
|+..|..+|.|+.. |.+.||+..+...+-.
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------------------- 345 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------------------- 345 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccceeee-------------------------------------------------
Confidence 99999999999875 7899998876533322
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
..+|...+.+++++|||+++++|+.||.|+||+ ..+|
T Consensus 346 ---------------------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----------------------~~Sg 382 (893)
T KOG0291|consen 346 ---------------------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----------------------TQSG 382 (893)
T ss_pred ---------------------ccccccceeeEEECCCCcEEEeccCCCcEEEEe----------------------ccCc
Confidence 234777889999999999999999999888765 5667
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCC
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
.|+.+++- |...|+.+.|+..|+.+++.+ ||+|+.||+...+..+++..+. ....|++..| .|.++..|+.|.
T Consensus 383 fC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~ 457 (893)
T KOG0291|consen 383 FCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDS 457 (893)
T ss_pred eEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccce
Confidence 78888764 999999999999999999999 9999999999999999998654 3568999999 899999999886
Q ss_pred -eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEe
Q 001396 861 -TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 861 -~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
.|++|++++|+++..+.||.++|.+++|+|++..|||+|.|++|++||+-.... +...++.. ..+..++|+
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i~-------sdvl~vsfr 529 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEIR-------SDVLAVSFR 529 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEeec-------cceeEEEEc
Confidence 899999999999999999999999999999999999999999999999976321 11223222 148899999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCccceeccc------cC-------------CccCEEEEEEeCCCCEEEEEECCCcEEEE
Q 001396 940 KDQTRFLL-VHETHLAIYEAEELTCLKQWF------PI-------------SSVPISQATFSCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 940 ~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~------~~-------------h~~~v~~l~fs~dg~~l~s~~~Dg~v~vW 999 (1086)
|||+.||+ +-||.|.+||...+..+..+- .+ .....+.+++|+||.+|++||....|++|
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999 689999999998765553211 11 15788999999999999999999999999
Q ss_pred EcCCCceeeeecccc--------------------------------------ccCCCC----ccC----cccceEEEEC
Q 001396 1000 EASNLEVQCRILSTA--------------------------------------YLRPTT----SCL----HVYPHAIAAH 1033 (1086)
Q Consensus 1000 d~~~~~~~~~~~~~~--------------------------------------~~~~~~----~~~----~~~~~~~~~~ 1033 (1086)
+++++.++.+|+... .+|... +.. .+.+.++.|+
T Consensus 610 ~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fs 689 (893)
T KOG0291|consen 610 DVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFS 689 (893)
T ss_pred ECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEEC
Confidence 999999988887111 111110 011 2556889999
Q ss_pred CCCCCEEEEEeCCCcEEEEcc
Q 001396 1034 PLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1034 p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
| .|+-+|++++.|. .|+.+
T Consensus 690 P-tgraFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 690 P-TGRAFAAATTEGL-LIYSL 708 (893)
T ss_pred C-CcCeeeeecccce-EEEec
Confidence 9 7899999999885 34443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=410.87 Aligned_cols=541 Identities=12% Similarity=0.199 Sum_probs=434.6
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
...+.+|...++-..|||.|- ++|+|...|+|+|||....+.+...+++ .-.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence 456689999999999999997 5999999999999999876655544443 2457999999999
Q ss_pred CCCEEEEEeCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 401 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 401 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
|+++|++.++. +..+++-.++|..+. ++.||...|.+++|-|.... .++||++|++|.+|+-.--+...++..|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 99999887543 333444444454444 68899999999999998765 8999999999999996666777888899
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec---CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
...|+++.|+| ||.++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||++.+++++. +..+++||
T Consensus 190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd 263 (603)
T KOG0318|consen 190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD 263 (603)
T ss_pred ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence 99999999955 78999999999999999999999988887 78899999999999999999987 66799999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+.+.++++++.....-......+.|. +..|++.+.+|+|.+++...+..+..+.+|. ..|++++.+|++++|++|+
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS 339 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence 99999999987654222344455565 5689999999999999999999888888774 4699999999999999999
Q ss_pred CCCcEEEEECCCCCeeeec-cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCC
Q 001396 636 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 714 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~ 714 (1086)
.||.|.-|+..++..-+.. ++|...|.+++.. +...+++.+.|.++++.++....-
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence 9999999999988666544 6788888887775 235577888999999987643322
Q ss_pred ccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCC
Q 001396 715 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 794 (1086)
Q Consensus 715 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 794 (1086)
.....+.+. ....+++..+++..++.+...+.+.+-+... ....+
T Consensus 397 t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~~----- 441 (603)
T KOG0318|consen 397 TKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSIP----- 441 (603)
T ss_pred cccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceeec-----
Confidence 222211111 2234788888887666666555444422211 11111
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceE--EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
......++|++|++..+|+|+ |+.++||.+..+.. ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.+
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence 345678999999999999998 79999999987553 334567999999999999 99999999999999999999987
Q ss_pred eEEE-eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC
Q 001396 872 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 872 ~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
.... +.-|+.+|.+++|||+.+++|||+-|-.|.||+++... ..+.....|.. .|..++|-.+...+-++.|
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~D 593 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQD 593 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCc
Confidence 7433 33499999999999999999999999999999999744 23555566665 5999999998888888999
Q ss_pred CeEEEEEcC
Q 001396 951 THLAIYEAE 959 (1086)
Q Consensus 951 ~~i~vwd~~ 959 (1086)
..|++|++.
T Consensus 594 a~iK~W~v~ 602 (603)
T KOG0318|consen 594 ANIKVWNVT 602 (603)
T ss_pred ceeEEeccc
Confidence 999999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=413.33 Aligned_cols=583 Identities=15% Similarity=0.178 Sum_probs=444.6
Q ss_pred CceEeeec-CCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 330 SPMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~s-pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
.+..+..+ ..|++ +| ++.-..|.+||+++|+...... .......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~-va-~~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VA-VSALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EE-EeccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence 34444433 45875 33 3334789999999996554211 22334689999999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
..||.|+||+..++.... ++.+|...|+.+.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.
T Consensus 84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 999999999999875433 7889999999999999999 89999999999999999888899999999999988875
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC---------
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--------- 559 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--------- 559 (1086)
. +..++++.+.|+.|++||+++..+..+...|.+.+..+++.+ +.+++++. +..+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 3 456999999999999999999999999999999999999988 67777765 556999998211
Q ss_pred ---eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEE--------EcCCC--------------
Q 001396 560 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT--------IDAGG-------------- 614 (1086)
Q Consensus 560 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------~~~~~-------------- 614 (1086)
+...++... ..+....+...++++++++-+.|..+.++.+.+.+.+.. ...+.
T Consensus 231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 011112211 134455666778888999999999999998875321110 00000
Q ss_pred ----------CCCCCceEEEecCCCE--EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCee
Q 001396 615 ----------GLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 615 ----------~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
....+.++.+-|.++. -++.-.++++.+|.++......
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~------------------------------ 358 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS------------------------------ 358 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC------------------------------
Confidence 0112344555443221 1122344555555544210000
Q ss_pred eecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCcc
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 762 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 762 (1086)
| .+.... .+...+|...|+++++|.+...+++++. +.+++|
T Consensus 359 -------p----------------------~~~~~~--~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW------- 399 (888)
T KOG0306|consen 359 -------P----------------------EADRTS--NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW------- 399 (888)
T ss_pred -------c----------------------cccccc--eeeeccchhheeEEEeecCceeeeecCC-CcEEEE-------
Confidence 0 000011 1122359999999999999876655554 455555
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeE
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 841 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 841 (1086)
+..+.+|+.++. ...+.+..|-|.++++++|. .|.+.+||+.+...+.+.+.|.+.|.
T Consensus 400 ---------------n~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 400 ---------------NRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred ---------------EccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 556667777653 34788999999999999998 59999999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCC-----ceeE--------EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 842 SLAFNPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 842 ~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~~~~--------~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
+++.+| |++.+++|+.|.+|++||..- |... .+++ -...|.|+.+||||++||.+=-|.+|+||-
T Consensus 459 si~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 459 SISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred eeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 999999 999999999999999999742 1111 1222 346799999999999999999999999999
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
+++ .+..-.+.||.- +|.++.+|||++++++ +.|.+|++|-+.=|.|-..++ +|...|.++.|.|+..++
T Consensus 537 lDt-----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~F 607 (888)
T KOG0306|consen 537 LDT-----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLF 607 (888)
T ss_pred ecc-----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeE
Confidence 998 445566778876 8999999999999999 689999999999999999854 799999999999999999
Q ss_pred EEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 988 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 988 ~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
+++|.|+.|+-||-+..+.+..+. .|...++ |++.+| +|.++++++.|.+|++|+-.++.
T Consensus 608 Ft~gKD~kvKqWDg~kFe~iq~L~--------~H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKFEEIQKLD--------GHHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred EEecCcceEEeechhhhhhheeec--------cchheee--eeEEcC-CCCeEEeccCCceeEeeeccCcc
Confidence 999999999999999998887777 2233344 788888 79999999999999999987633
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=400.04 Aligned_cols=333 Identities=20% Similarity=0.326 Sum_probs=305.3
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..|...+.||.+.|.|++|||+|++ ||+|+.|.++++||+.+..+.++ .++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence 5677889999999999999999996 99999999999999999888876 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC-----CCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-----d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..++++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987665 5889999999999965 556 7999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEe-----------cCCC-----
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR----- 536 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~~----- 536 (1086)
..+.+|+.+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 99999999999999832 3 499999999999999999999999999999999998877 2233
Q ss_pred --------------------EEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc
Q 001396 537 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 595 (1086)
Q Consensus 537 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 595 (1086)
.|++++. +..+.+|+... .+++..+.+|+ ..|+.+.|+||++++++++.|..
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence 4888875 77899999764 45888899998 99999999999999999999999
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceec
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 675 (1086)
|++||.++|+.+..+.+| ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws-------- 460 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS-------- 460 (480)
T ss_pred eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence 999999999999999866 5579999999999999999999999999999999999999999999999995
Q ss_pred cccCCeeeecCCCCCCcccceeccccCccceee
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~ 708 (1086)
|||+.+++|+.|..+++|.
T Consensus 461 --------------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 --------------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------CCCceeecCCCceEEEeec
Confidence 8899999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=413.50 Aligned_cols=547 Identities=13% Similarity=0.200 Sum_probs=433.9
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
+.+|+|+.-+||.- +||+|..||.|+||+..++..+.+ +.||...|+++.|...|.+||+
T Consensus 65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS 124 (888)
T KOG0306|consen 65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS 124 (888)
T ss_pred cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence 35899999999985 799999999999999998866654 8899999999999999999999
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEee
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 487 (1086)
|+.|+.|.+||+-....+. .+.||.+.|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.++++++
T Consensus 125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 9999999999998755433 6889999999999998777 8999999999999999999999999999999999999
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCcee-------------EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
.+ ..+++++.|+.+++|++...... .......++...++..++++++++-+. +..+.++
T Consensus 200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~----d~~~e~f 271 (888)
T KOG0306|consen 200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGA----DKVIELF 271 (888)
T ss_pred ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecc----hhhhhhe
Confidence 54 58999999999999998321100 011122234556667778888877765 5567777
Q ss_pred eCCCCeeeeE--------------------------------EecccccCCceEEEEEecCCCEE--EEEECCCcEEEEE
Q 001396 555 NESEGAIKRT--------------------------------YQGLQLQHNSVSVVHFDTAKDQI--LAAGDDHVIKIWD 600 (1086)
Q Consensus 555 d~~~~~~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l--~~~s~dg~i~iwd 600 (1086)
.+.+.+.+.. +... .....+.++.|.|.+... +..-.++++..|.
T Consensus 272 rI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i-r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ys 350 (888)
T KOG0306|consen 272 RIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI-RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYS 350 (888)
T ss_pred eecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe-echhheeEEEEEecCCcceeEEEeecCceEEEE
Confidence 6654321100 0000 012467778887765422 2235677888887
Q ss_pred cCC-Ce------eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 601 MNK-VQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 601 ~~~-~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
+.. +. .+..+...++...|..+++|.+...+++|+ .+.+.+|+..+.++++++... .+.+..|
T Consensus 351 l~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~F------- 420 (888)
T KOG0306|consen 351 LENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKF------- 420 (888)
T ss_pred eccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEe-------
Confidence 765 22 233445556677899999999887777765 478999999999999887643 4444444
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
-|.+++++.|...|.+.++|+......... ..|.+.|.+++.+||++.+++++.|.+|+
T Consensus 421 ---------------vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti------~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 421 ---------------VPGDRYIVLGTKNGELQVFDLASASLVETI------RAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ---------------cCCCceEEEeccCCceEEEEeehhhhhhhh------hccccceeeeeecCCCCceEEecCCcEEE
Confidence 377889999999999999997643322221 24899999999999999999999999999
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 832 (1086)
+|++..-.. ..|... ++..+.. ..+. .-...|.|+.+||||++||++- |++++||-+.+.+....
T Consensus 480 fWdf~l~~~-~~gt~~-----k~lsl~~---~rtL-----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 480 FWDFKLVVS-VPGTQK-----KVLSLKH---TRTL-----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred EEeEEEEec-cCcccc-----eeeeecc---ceEE-----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence 999754321 111110 0011110 1111 2467899999999999999997 99999999999999999
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 912 (1086)
+.+|.-+|.|+.+|| |+++++||+.|.+|++|-++-|.|...+-+|.+.|.++.|-|+...+.++|.|+.|+-||-..
T Consensus 546 LYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k- 623 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK- 623 (888)
T ss_pred ecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCcc
Q 001396 913 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 962 (1086)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~ 962 (1086)
...++.+.+|.. .|.+++.+|+|.++++ +.|..|++|......
T Consensus 624 ----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 624 ----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ----hhhheeeccchh---eeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 457888888886 8999999999999999 689999999977533
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=393.82 Aligned_cols=367 Identities=20% Similarity=0.290 Sum_probs=294.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 78999999999999999999999999999999999976554 7899999999999999999 899999999999999
Q ss_pred CCCCcee-EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 466 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 466 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.++|+++ ..+.+|...|++++|.|- ...|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence 9999876 788999999999999652 23366677777765
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|+.++|||+..+.++..+.+|. .+|+|+.|..+| +|++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 6668889988899999999998 999999998775 899999999999999999999999998866 5888888
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
+.|- .|-+|..|.+=+-....+..... +......
T Consensus 297 sTdy-~LRtgaf~~t~~~~~~~se~~~~------------Al~rY~~--------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGRKPKSFSEEQKK------------ALERYEA--------------------------------- 330 (480)
T ss_pred cchh-hhhccccccccccCCChHHHHHH------------HHHHHHH---------------------------------
Confidence 7542 22233222211110000000000 0000000
Q ss_pred ceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCc
Q 001396 705 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 784 (1086)
Q Consensus 705 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 784 (1086)
+.-..+.++++++.|+++.+|+-.... ++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence 000122345555555555555421110 00
Q ss_pred eeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001396 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 863 (1086)
Q Consensus 785 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~ 863 (1086)
+.. .. +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus 360 i~r--mt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 ITR--MT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hhh--hh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 100 11 4899999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 864 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 864 iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
+|++.+.++...+.||.+.|.++.|+|||+.+++++.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=387.67 Aligned_cols=540 Identities=14% Similarity=0.172 Sum_probs=432.0
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
.+.|++||..+++-..+ .|.++|+...+.... .-.+...|.+++.||+|. ++++....|.+.+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 58899999999987655 499999988754331 225778899999999999 888899999999999888888888
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--------eEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+. ...+|.+++|+| ||.+++. +..+.+.+|....... ...+.++...+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav-~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAV-GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEE-EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 75 678899999955 6655554 5567899997654322 3356777889999999999999999986
Q ss_pred CceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--------------------
Q 001396 547 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 604 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 604 (1086)
|..+++|+++..+- ...+.+|. +.|.++.|..+...+++.+.||.+.+|.....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 77899999886655 55666777 99999999999999999999999999987611
Q ss_pred ---ee---------EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 605 ---QL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 605 ---~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
+. ....-.......+.+.+|++..+.|+++-..|...+|++..-..+..+..
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi---------------- 305 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI---------------- 305 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence 10 00111111124577888888888888888888888888876655544331
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ce
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV 751 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~ 751 (1086)
...+|..++|+..|..++.++.. |.
T Consensus 306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence 23467888888889999888776 99
Q ss_pred eEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEE
Q 001396 752 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 830 (1086)
Q Consensus 752 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~ 830 (1086)
+.||+|+.+.+ . +...+|...+.++++||||+++|+|. ||+|+|||..++-|.
T Consensus 332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 99999887643 1 22336999999999999999999998 799999999999999
Q ss_pred EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCeEEEEEeCCCCEEEEEeCCC-cEEEEE
Q 001396 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGDA-QIFVWD 908 (1086)
Q Consensus 831 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s~s~dg-~i~iwd 908 (1086)
.+|..|...|+.+.|+. .++.+++.+-||+|+.||+......+++.... -...|++..|.|..+..|+.|. .|.||+
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 99999999999999999 99999999999999999999999998887532 3456788888899998888876 599999
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
+++|. .+..+.||.. +|.+++|+|+|..|++ +-|.+|++||+-......+.+ .+...+..+.|+|||+-|
T Consensus 465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL 535 (893)
T ss_pred eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence 99965 6778888886 9999999999999999 689999999987553333322 357889999999999999
Q ss_pred EEEECCCcEEEEEcCCCceeeeeccccccCCCC----------ccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 988 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT----------SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 988 ~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
++++.||.|.+||...+.....+.....+..+. +...-.-..+++++ ||..+++||..+.|+++++++.
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchh
Confidence 999999999999999988876665433332221 11112236789999 7999999999999999999764
Q ss_pred C
Q 001396 1058 G 1058 (1086)
Q Consensus 1058 ~ 1058 (1086)
-
T Consensus 615 v 615 (893)
T KOG0291|consen 615 V 615 (893)
T ss_pred h
Confidence 3
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=364.36 Aligned_cols=621 Identities=14% Similarity=0.155 Sum_probs=417.0
Q ss_pred ceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE--
Q 001396 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-- 408 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-- 408 (1086)
-..++.+|-.. ++|.- ....|.+||+....+-+ ++..|..+++|+|||++|+|+|+|
T Consensus 40 ~~gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAYP-AGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceeec-cCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 34566666554 33321 22678899987765443 366788899999999999999998
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEe
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~ 486 (1086)
+....++||++..-..+. ++..|+..|+|++|+|.++ ++++.+... .|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 366789999999876554 6889999999999999999 788776544 57788876544333222 456688888
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeE-E--ecCCCC--------ceEEEEE----ecCCCEEEEEeeCCCCceeE
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-D--YDAPGL--------GCTRMAY----SANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~--~~~~~~--------~i~~~~~----s~d~~~l~~~~~~~~~~~~i 551 (1086)
| ++||.++++.+ ...|++|.++...... . +.+... ....++. ..+..+.++. .|.+
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL 243 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL 243 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence 8 66888888876 5789999887665221 1 111100 0001110 0111111111 1112
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-------------------
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA------------------- 612 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~------------------- 612 (1086)
.-+ ...+++.++..-. ....+|++.+ .++|++|+.+|.|++|+..+-....+++.
T Consensus 244 vEF--SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 244 VEF--SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred eee--chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 222 2222222221111 1344566665 57999999999999999877544433321
Q ss_pred ---CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee---eeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 613 ---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 613 ---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
....+...++.|++....|.+...|..+++||++.-..+ ..+--|...|+.+..-|..-.. .....
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~-----~~~ac--- 389 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHS-----PTAAC--- 389 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccC-----ccccc---
Confidence 111233456889999999999999999999999876443 3344577778777665521100 00001
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
-|.+ -++++++|++||+|+++.....+... .-.++.+-..++.. |++..+..
T Consensus 390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyr-------------RNils~~l~ki~y~--d~~~q~~~---------- 441 (1080)
T KOG1408|consen 390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYR-------------RNILSANLSKIPYE--DSTQQIMH---------- 441 (1080)
T ss_pred --CCcc-ceeEecCCCcEEEeecccccccceee-------------cccchhhhhcCccc--cCchhhhh----------
Confidence 1222 37899999999999987532222110 00111111111111 11100000
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEE
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 845 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 845 (1086)
....-++|-.... . ......++++++||||++||+|+ .|.++||++...+....+..|..+|.|+.|
T Consensus 442 ----d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 442 ----DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred ----hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 0000111100000 0 12566799999999999999998 599999999999999999999999999999
Q ss_pred cCC--CCCEEEEEeCCCeEEEEEcCC-ceeEEEeccccCCeEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeeeee
Q 001396 846 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSL 920 (1086)
Q Consensus 846 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~v~~l~~spdg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 920 (1086)
|.. ..++||+++.|..|.|||+.. ..++.++.+|...|+++.|.-.| ..++++|.|+.|.+ +...... . -.+
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~-~-g~~ 586 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKAS-S-GRL 586 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhcccc-C-cee
Confidence 853 367999999999999999975 36788999999999999999887 78999999997754 4332110 0 011
Q ss_pred eccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccC--CccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 921 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 921 ~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
..-..+......+..++..|..+++++ +.|..|+||++.+|+..+.+... |.+....+...|.|-|||+.+.|.++.
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 111111111246889999999999999 79999999999999998876544 467788889999999999999999999
Q ss_pred EEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 998 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 998 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++|..+|++++++.. +.-.+..+.|.+ |...|++.+.||.|.||.++
T Consensus 667 ~~Df~sgEcvA~m~G----------HsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTG----------HSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred EEEeccchhhhhhcC----------cchheeeeeecc-cchhheeecCCceEEEEECc
Confidence 999999999998882 223345788999 68999999999999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=349.48 Aligned_cols=509 Identities=15% Similarity=0.186 Sum_probs=379.8
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEe--ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+.+..|..+++|++||++|+| +|+|- ....++||++..-..+.+ +..|...|+|++|+
T Consensus 72 hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs 131 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS 131 (1080)
T ss_pred heecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence 345677889999999999996 89886 345699999998776665 66899999999999
Q ss_pred CCCCEEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE----
Q 001396 400 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY---- 473 (1086)
Q Consensus 400 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~---- 473 (1086)
|.++|+++.+. |-.|.+||++...... -..-...|.+++|+.||. ++++.+ ...|++|.++.++...
T Consensus 132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence 99999998765 5578889887543221 123456799999999999 788887 6789999987665110
Q ss_pred ---------Ee------------------------ecC-----------------CcceEEEeecccCCccEEEEEEcCC
Q 001396 474 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG 503 (1086)
Q Consensus 474 ---------~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~dg 503 (1086)
.+ .|| +..-.|+++ +..+++.|+.+|
T Consensus 205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g 280 (1080)
T KOG1408|consen 205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG 280 (1080)
T ss_pred ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence 00 001 011123333 335899999999
Q ss_pred eEEEEEcCCCceeEEecCC------------------------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 504 KIKAWLYDSLGARVDYDAP------------------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 504 ~i~vwd~~~~~~~~~~~~~------------------------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.|++|+..+.....++... -.....+.|++....|.+... +..+++||++.-
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV 356 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence 9999987654432222110 012456788888888888775 778999999876
Q ss_pred eeeeEEecccccCCceEEEEEecC-----------CCEEEEEECCCcEEEEEcCCCe---eEE----------EEc----
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQ---LLT----------TID---- 611 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~---~~~----------~~~---- 611 (1086)
+.+......-.|...|+.+.--|. ...+++++.|++|++|++..+. ... ...
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 554433322223366666654441 2358899999999999997521 110 000
Q ss_pred ------------------CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 612 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 612 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
.-++...+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++...
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~--- 513 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV--- 513 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence 00122467899999999999999999999999999999999999999999999997321
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCC--ceEEEeeccce
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV 751 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~ 751 (1086)
-..++|++++.|.-|.++|... ...+.....+|...|+++.|...| ..+++++.|..
T Consensus 514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks 572 (1080)
T KOG1408|consen 514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS 572 (1080)
T ss_pred ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence 2357899999999999999652 222333335699999999999888 77888888876
Q ss_pred eEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEE
Q 001396 752 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 830 (1086)
Q Consensus 752 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~ 830 (1086)
+.+--.+.. .+|..+.....+ -....+..|++.|..++++++. |..|+||++++++..
T Consensus 573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 654211110 111111111110 1355688999999999999998 899999999999999
Q ss_pred EEEcC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001396 831 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 907 (1086)
Q Consensus 831 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 907 (1086)
+.|++ |.+....+...| .|-|||+.+.|+++.++|+.+|+++.+..||...|+.+.|++|-+.|++++.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 99976 556788899999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC
Q 001396 908 DVDG 911 (1086)
Q Consensus 908 d~~~ 911 (1086)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 9764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=341.75 Aligned_cols=607 Identities=13% Similarity=0.147 Sum_probs=427.7
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC---EEEEEe
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAY 409 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~ 409 (1086)
...|.|.+ ++|.|.. ..|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence 34456766 4677654 789999987653333 3889999999999999988 899999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeecCCcceEE--E
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYS--L 485 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~--~ 485 (1086)
.|+.|.+|.++. +.+.....+.+|...+.|+ ..... .......|+++.+||.+..+ ++..+.-..+.+.. +
T Consensus 77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999994 3344455677766555544 43222 22223689999999985555 33333333333333 3
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCC--ceeEEecCCCCceEEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCe
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
++.+.++.-.++.|+.+..|.++.-... .....+.+|...|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence 4444334445666778888888865533 34567889999999999987554 5555554 8899999765332
Q ss_pred ---------------------eeeE----------EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--eeE
Q 001396 561 ---------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLL 607 (1086)
Q Consensus 561 ---------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~ 607 (1086)
.... +.||. +.|+++.|+|.+..|++++.|.++.+|...+. --.
T Consensus 228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv 304 (764)
T KOG1063|consen 228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV 304 (764)
T ss_pred CccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEE
Confidence 1111 22555 99999999999999999999999999988765 222
Q ss_pred EEEcC---CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC---CeeeeccccccceeeeEEccCCCceeccccCCe
Q 001396 608 TTIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 681 (1086)
Q Consensus 608 ~~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 681 (1086)
..... .+........-|+|+++.+++-+..|..++|...+. .....+.||...|..++|.
T Consensus 305 ~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-------------- 370 (764)
T KOG1063|consen 305 DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-------------- 370 (764)
T ss_pred EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec--------------
Confidence 22221 122334688999999999999999999999994433 3445677999999999996
Q ss_pred eeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCc
Q 001396 682 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 761 (1086)
Q Consensus 682 ~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 761 (1086)
|.|.++++.+.|.+-|+|-.... ......+..| +.|...++++++-+....+++++....+|+|+.+..-
T Consensus 371 --------psGeflLsvs~DQTTRlFa~wg~-q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 371 --------PSGEFLLSVSLDQTTRLFARWGR-QQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred --------CCCCEEEEeccccceeeeccccc-ccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 67889999999999999876522 2223333333 3589999999999976678889999999999976432
Q ss_pred c----------------ccCcccccc---cCCcee--cCCCCCc------------------------eeeec-----CC
Q 001396 762 L----------------TLSTEATTK---VPPRLY--QPRHGPQ------------------------FMVND-----TT 791 (1086)
Q Consensus 762 ~----------------~~~~~~~~~---~~~~~~--~~~~g~~------------------------~~~~~-----~~ 791 (1086)
. .+.+..... ..-.++ +..+|.. +.... .+
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 1 000000000 000000 1111111 10000 01
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeC------CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
..||...|.+++.+|+|+++|++.. ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|.++.+|
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLY 599 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEee
Confidence 3479999999999999999999861 3599999999999999999999999999999 99999999999999999
Q ss_pred EcCCcee----EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 866 NARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 866 d~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
....... ....+.|+.-|++..|+||++++||+|+|++|++|......... +... ........|+++++.|-
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~---i~~~-a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY---ISRF-ACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh---hhhh-chhccCCceeeEEeecc
Confidence 9865422 23467899999999999999999999999999999998753111 1111 11222247889998763
Q ss_pred C-----CEEEEE-eCCeEEEEEcCC-------ccc----eeccccCCccCEEEEEEeCC----------CCEEEEEECCC
Q 001396 942 Q-----TRFLLV-HETHLAIYEAEE-------LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDG 994 (1086)
Q Consensus 942 g-----~~l~~~-~d~~i~vwd~~~-------~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~s~~~Dg 994 (1086)
- ..+++| ..|.|.+|.... +.. ...-..+|...|..++|+|- ...|++|+.|.
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 2 245556 678999999651 110 00112356889999999964 23579999999
Q ss_pred cEEEEEcC
Q 001396 995 TLSIHEAS 1002 (1086)
Q Consensus 995 ~v~vWd~~ 1002 (1086)
+++++++.
T Consensus 756 ~vri~nv~ 763 (764)
T KOG1063|consen 756 SVRIFNVD 763 (764)
T ss_pred eeEEeecc
Confidence 99999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=340.97 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=266.6
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC--C
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G 402 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 402 (1086)
.|.+.+|..+.||+|++ +|||||.+|.++||+..++..+.. +.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 36677999999999998 699999999999999999877655 8899999999999997 6
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
..+|+|+.||++++|++.+...+. .+.+|..+|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 6889999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+++|.+ ||.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|++|+. |++++|||++....+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999955 7889999999999999999999999999999999999999999999999986 888999999999999
Q ss_pred eEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 563 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
.++.+|. +-|+.++|+| .|.+|++++.|++++||...+..+++.+.+|.+ .|.++.+++|+..+++++.|.+++
T Consensus 381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence 9999988 9999999998 688999999999999999999999999998855 599999999999999999999999
Q ss_pred EEE
Q 001396 642 ILE 644 (1086)
Q Consensus 642 iw~ 644 (1086)
+|.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=333.79 Aligned_cols=580 Identities=15% Similarity=0.158 Sum_probs=434.6
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
..+..-|..++++.+.+.+..+||.+.-..+.. -..+...|+|++=..+--|.|+| . .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g--~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG--N-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC--c-E
Confidence 555555666788889999999999988777653 23567899998876554444433 3 3
Q ss_pred EEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ce----eEEeecCCcceEEEeec
Q 001396 414 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SR----TYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~~~~~ 488 (1086)
|.+|.- |+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ .. +.-++...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 333332 45677777776654 455 6888999999999998874 22 122233333477764 4
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
|+---+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|.|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 4444457899999999999999999999999999999999999999999999876 778999999999999999976
Q ss_pred cccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCeeEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 569 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
. +.|++++|..||+.+++ |+..|.+.+||++..+++..+. .| ...+....|-|....+++++.|+.+++|-.+
T Consensus 244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence 6 89999999999987655 6677999999999998887776 44 2358889999999999999999999988665
Q ss_pred CC----CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccccc
Q 001396 647 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 722 (1086)
Q Consensus 647 ~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 722 (1086)
++ +.++.-.||..+-.++.|. ...|..+.+++.|++.+.+.+......+...
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~--- 374 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQELG--- 374 (910)
T ss_pred CCCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhc---
Confidence 43 5566667899988888886 4678889999999999888754211111000
Q ss_pred CCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 723 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 723 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
.......++ .+.+ .. ...+ .-.+|..+
T Consensus 375 ----------~~~~~~~~k---------k~~~----------------------~~--------~~~~----k~p~i~~f 401 (910)
T KOG1539|consen 375 ----------QLHNKKRAK---------KVNV----------------------FS--------TEKL----KLPPIVEF 401 (910)
T ss_pred ----------ccccccccc---------cccc----------------------cc--------hhhh----cCCcceee
Confidence 000000000 0000 00 0000 11233333
Q ss_pred EeecCC----CEEEEEe--CCeEEEEEccCceE-EEEEc-----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 803 ALSKND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 803 ~~s~dg----~~l~~~~--dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
++.-.. .-++++. +..++.|++..... ...+. .....+++++.++ .|++.+.|+..|.|-+|++++|
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence 333211 1123332 46688999876554 22332 2336789999999 9999999999999999999999
Q ss_pred eeEEEe---ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 871 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 871 ~~~~~l---~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
-....+ ..|.++|++++...-++.+++++.+|.+++||.+.... +...+-. ..+.++..+.....+++
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l~----~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRLG----SSITGIVYHRVSDLLAI 551 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeeccC----CCcceeeeeehhhhhhh
Confidence 988888 58999999999988889999999999999999998542 2222111 25788888888888888
Q ss_pred -EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCccc
Q 001396 948 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1026 (1086)
Q Consensus 948 -~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1086)
..|-.|.++|..+.+.++. +.||..+|+.++|||||++|++++.|++|++||+.++.++-.+. ....
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-----------vd~~ 619 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-----------VDSP 619 (910)
T ss_pred hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-----------cCCc
Confidence 5777899999999998887 66899999999999999999999999999999999999997765 1234
Q ss_pred ceEEEECCCCCCEEEEEeCC-CcEEEEc
Q 001396 1027 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1053 (1086)
Q Consensus 1027 ~~~~~~~p~~~~~l~~~~~d-g~v~vw~ 1053 (1086)
+.++.|+| +|++||++..| ..|++|-
T Consensus 620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 57899999 79999999999 6899996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=307.98 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=268.7
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...++|+||...|.++.|++|.++ |+++|.||.+.|||..+...++. ++-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 445899999999999999999996 99999999999999999887765 3335689999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCC---ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+|.|+++|+|+-|+...||++.+.+ ..+...++.+|++.+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344446889999999999999875 899999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.++..+.+|...|.+++|.|+|.-+++|+. ++..++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence 999999999999876 7789999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
++..+.+..|.... ...+|++++|+..|++|++|..|.++.+||.-.++....+.+|.+ .|.++..+|||.-+++|+
T Consensus 258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 99999998888433 457899999999999999999999999999999999999997754 699999999999999999
Q ss_pred CCCcEEEEE
Q 001396 636 NENRIKILE 644 (1086)
Q Consensus 636 ~dg~i~iw~ 644 (1086)
.|..++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=307.37 Aligned_cols=298 Identities=19% Similarity=0.280 Sum_probs=256.1
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+.-+|++|++.|+.++..+.+..++.+++.|.++.+|++.......- . ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~--~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------V--PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------c--eeeeeeccceEecceEEc
Confidence 45678999999999999999888999999999999999876422211 1 112288999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC-
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH- 478 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h- 478 (1086)
+||.+.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++||. -|.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt-~g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNT-LGVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeee-cccEEEEEecCC
Confidence 999999999999999999999996555 6889999999999999999 7999999999999995 45566666544
Q ss_pred -CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 479 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 479 -~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
.+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+. ++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence 78999999999988899999999999999999999999999999999999999999999999876 7789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC-------CCCCceEEEecCCCE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 630 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 630 (1086)
.++.+..+... ..|.+++|+|+...|+. ..+..|+|||++++..+..+..... .+...+++|++||..
T Consensus 223 ~~k~lysl~a~----~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEeccCC----CeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998777653 59999999998655544 4455699999999988877754321 234567899999999
Q ss_pred EEEEECCCcEEEEECC
Q 001396 631 LAVIANENRIKILETP 646 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~ 646 (1086)
|+.|..|+.|++|.+.
T Consensus 298 Lf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeeecCCcEEEEEee
Confidence 9999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=334.03 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.7
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
|.+.+|..+.||+|++.||+|+-+|.++||+..+...+. +|.+|...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456899999999999999999999999999999875444 78999999999999998422379999999999999999
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+.+........+|...|.+++|.+||.++++|+-
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6789999999999999999999999999999999999999999999999987
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 626 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 626 (1086)
|..-++||+++|+++..+.+|. .+|.+++|+|+|..+++||.|++++|||++..+.+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 7778999999999999999988 9999999999999999999999999999999999999987754 599999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 627 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
.|.+|++++.|+++++|...+..+++.+.||.+.|.++.++ +|++.+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999986 78999999999999999
Q ss_pred ee
Q 001396 707 EK 708 (1086)
Q Consensus 707 w~ 708 (1086)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=325.65 Aligned_cols=481 Identities=17% Similarity=0.259 Sum_probs=361.1
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
.+++..|++.|.++.|+|.... +.++-..|.|.|||.++..+++.+. -.+.+|.+..|-+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfe-------------------V~~~PvRa~kfia 65 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFE-------------------VSEVPVRAAKFIA 65 (794)
T ss_pred hhHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeee-------------------ecccchhhheeee
Confidence 3456679999999999999985 7777888999999999999887633 3567999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeecCC
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 479 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~ 479 (1086)
-.+++++|++|..|+||+.++++.++ .+.+|.+-|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 99999999999999999999998776 7899999999999999988 8999999999999999865 7789999999
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC--CEEEEEeeCCCCceeEEEEeCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
..|.+++|+|. |...+++++-|++|++|.+.+..+..++.+|...|+++.+-+-| .+|++|+. |..+.+||.+
T Consensus 141 HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQ 215 (794)
T KOG0276|consen 141 HYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQ 215 (794)
T ss_pred eEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecc
Confidence 99999999987 55799999999999999999999999999999999999998755 58999875 7889999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+..+++++.||. ..|+.++|+|.-..+++|++||+++||+..+.++..++... ...+.+++-.+.++.+++|.+.
T Consensus 216 tk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccC
Confidence 999999999999 99999999999999999999999999999999988888755 3468999999988899999988
Q ss_pred CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccc
Q 001396 638 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 717 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 717 (1086)
|.|.+ .+....+...+ .+.|+.+ |..
T Consensus 291 g~i~v-~lgreeP~vsM----------------------------------d~~gKIi-----------wa~-------- 316 (794)
T KOG0276|consen 291 GSVTV-KLGREEPAVSM----------------------------------DSNGKII-----------WAV-------- 316 (794)
T ss_pred CcEEE-EccCCCCceee----------------------------------cCCccEE-----------EEc--------
Confidence 87765 33222222111 1112221 211
Q ss_pred cccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCC-CC
Q 001396 718 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN-SQ 796 (1086)
Q Consensus 718 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 796 (1086)
.+.|..+..- +.+.++ ++..|+++ ....++.+ -+
T Consensus 317 ----------~~ei~~~~~k-------s~~~~~---------------------------ev~DgErL-~LsvKeLgs~e 351 (794)
T KOG0276|consen 317 ----------HSEIQAVNLK-------SVGAQK---------------------------EVTDGERL-PLSVKELGSVE 351 (794)
T ss_pred ----------Cceeeeeece-------eccCcc---------------------------cccCCccc-cchhhhccccc
Confidence 0111111110 000000 11111111 00000000 11
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 797 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
--...++.||+|+++++++||.-.||..-..+ ....+.-....|++ |....|+-..++.|+++ ++.+....+
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi 423 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI 423 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence 12235788999999999999999998743222 12445667889999 76777777778899998 666665555
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEE
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 956 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 956 (1086)
...-. +..--.|.+|...+ ++.+++||-++++... ..+- ....+.|+.+|.+++.+.|...+++
T Consensus 424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~v------~~k~v~w~d~g~lVai~~d~Sfyil 487 (794)
T KOG0276|consen 424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVR-----RIEV------TSKHVYWSDNGELVAIAGDDSFYIL 487 (794)
T ss_pred ccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEE-----EEee------ccceeEEecCCCEEEEEecCceeEE
Confidence 42111 11222355555555 5559999999866332 2222 2347999999999999888876666
Q ss_pred EcC
Q 001396 957 EAE 959 (1086)
Q Consensus 957 d~~ 959 (1086)
...
T Consensus 488 ~~n 490 (794)
T KOG0276|consen 488 KFN 490 (794)
T ss_pred Eec
Confidence 654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=296.71 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=266.8
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 488999999999999999999999999999999998876444 4566778999999999999 89999999999999
Q ss_pred eCCCC------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCE
Q 001396 465 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 537 (1086)
Q Consensus 465 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 537 (1086)
++.+. +..+.+.+|.+.+.++.|.. ...|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 34577999999999999964 34899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+++|+. |...++||++.+.++++|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 999987 7779999999999999999999 999999999999999999999999999999999999998877778
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++..+ |||..+++
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T 332 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT 332 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence 89999999999999999999999999999999999999999999999996 78888999
Q ss_pred ccccCccceee
Q 001396 698 VEAENKSEVEK 708 (1086)
Q Consensus 698 ~~~d~~i~vw~ 708 (1086)
|+.|.++|+|.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=321.25 Aligned_cols=555 Identities=14% Similarity=0.156 Sum_probs=402.4
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+.+.+.|+|++-+.+-- ++|.| ..|.+|. .|+.+.. ...+|...|.-+.. =|.+
T Consensus 73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~ 126 (910)
T KOG1539|consen 73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH 126 (910)
T ss_pred CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence 46778999998877653 23333 4566654 4543332 25567777776643 4889
Q ss_pred EEEEeCCCEEEEEEecCC-CccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 405 LGVAYSKHIVQLYAYHGG-SDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
++++..++.+.||+..++ +.......+..-. +.|+++. +|.----.++.|+.+|.+++|++++++.+++++++...|
T Consensus 127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I 205 (910)
T KOG1539|consen 127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI 205 (910)
T ss_pred EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence 999999999999999885 2211111222222 2266664 454321157889999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
+++.-+|-- ..++.|..+|+|.+++++..+.+..+....++|++++|..||..+.+.+.. .|.+.+||++..+.+
T Consensus 206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLI 280 (910)
T ss_pred eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeee
Confidence 999875544 489999999999999999999999999888999999999999988776542 567999999998888
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--Ce--eEEEEcCCCCCCCCceEEEe-cCCCEEEEEECC
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIANE 637 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~d 637 (1086)
......+ .+.+....|.|....+++++.|+.+++|=.++ |. .++... ++..+..++.|. .+|.++.+++.|
T Consensus 281 ~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 281 NVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred eeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccC
Confidence 7776322 48899999999999999999999998885554 32 233333 344567889988 689999999999
Q ss_pred CcEEEEECCCCCeeeeccc-------ccccee---eeEEccCCCceeccccCCeeeecCCC-CCCcccceeccccCccce
Q 001396 638 NRIKILETPESNSVDAAGV-------LSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~-------~~~~v~---~~~~~p~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s~~~d~~i~v 706 (1086)
++++.+++.....-+.+.. ....+. ...+.|. ..+++.... ....+.+...-.+...+.
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i----------~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI----------VEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc----------eeeecccchhhhhcceeEEecCcceEEE
Confidence 9999887663311111100 000000 0000000 011111111 122333444445567888
Q ss_pred eeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCcee
Q 001396 707 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 786 (1086)
Q Consensus 707 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 786 (1086)
|+......++...-.-+.......+++++.++-|+..+.|.+.|.|.+|+++.+-. ..
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------------r~ 484 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH----------------------RK 484 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------------ec
Confidence 98765544333222221222456789999999999999999999999988765421 11
Q ss_pred eecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 787 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 787 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
.+. ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+..|-.|+++
T Consensus 485 sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 485 SFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVV 561 (910)
T ss_pred ccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEE
Confidence 110 1124899999999998888888887 8999999999888777776 456788888888 77799999999999999
Q ss_pred EcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 866 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+. .+.+.+.|||+|.+|
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSFSPNGDFL 632 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEECCCCCEE
Confidence 99999999999999999999999999999999999999999999996643322221 258899999999999
Q ss_pred EEE-eC-CeEEEEEcC
Q 001396 946 LLV-HE-THLAIYEAE 959 (1086)
Q Consensus 946 ~~~-~d-~~i~vwd~~ 959 (1086)
|+. .| ..|++|.-.
T Consensus 633 AT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEEecCceEEEEEch
Confidence 995 33 569999754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=337.49 Aligned_cols=278 Identities=18% Similarity=0.273 Sum_probs=244.0
Q ss_pred cCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeee---eeeeee---------ecccccee
Q 001396 313 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVW---------DIGACSML 380 (1086)
Q Consensus 313 ~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~---------~~~~~~~~ 380 (1086)
...+|.-|..++..-...++|+.||+|+. +||.|..|..|++|.+...++... ..+.-- +...-...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 56788999999997777999999999998 799999999999999985432110 000000 11111122
Q ss_pred eeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc
Q 001396 381 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 460 (1086)
Q Consensus 381 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~ 460 (1086)
.....+.||+++|..+.|+|+.++|++++.|+++++|.+.+..++. .+.||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334589999999999999999999999999999999999987655 6789999999999999998 8999999999
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
.++|......+++.+.+|.+.|.|+.|+| +..++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999999999999999999999999987 5569999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
|+. ++.|.+||+.+++.+..+.+|. +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus 595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 986 7889999999999999999997 999999999999999999999999999987543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=287.82 Aligned_cols=293 Identities=17% Similarity=0.280 Sum_probs=253.3
Q ss_pred CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEe
Q 001396 340 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 419 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~ 419 (1086)
..-+||+++.|.+|++|...+|.+.++ +....+.|..+.+.||++.||+++... |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 335899999999999999999999876 444678999999999999999997664 999999
Q ss_pred cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE
Q 001396 420 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 420 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 499 (1086)
.++..- +..++.+|...|+++.|..||+ ++++||+||+++|||++...+.+.++ |..+|+++..+|. ...|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEee
Confidence 998753 5568999999999999999999 89999999999999999977777775 7899999999774 4589999
Q ss_pred EcCCeEEEEEcCCCceeEEecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC------eeeeEEecccccC
Q 001396 500 SVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG------AIKRTYQGLQLQH 572 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~ 572 (1086)
..+|.|++||+....+...+.. ....+.+++..|||.+++++.. .|..++|++-++ +++.+++.|.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~--- 215 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN--- 215 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence 9999999999998877665544 4458999999999999999875 778999998764 3455566666
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+.+..+.++||+++|+++|.|.+++||+.++. +....+. ++...+..++||.||++|++++.|+.+++|++..++.+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 88999999999999999999999999999988 4444444 44567999999999999999999999999999999999
Q ss_pred eeccccccceeeeEEc
Q 001396 652 DAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 652 ~~~~~~~~~v~~~~~~ 667 (1086)
....+|.....|++..
T Consensus 294 ~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 294 RQYQGHHKAAVCVALN 309 (311)
T ss_pred eecCCcccccEEEEee
Confidence 9999998887777654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=314.58 Aligned_cols=591 Identities=14% Similarity=0.168 Sum_probs=405.3
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCc-EEEEEEeCCCcEEEEeCCCC--cee
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTG--SRT 472 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-l~l~s~~~d~~i~iwd~~~~--~~~ 472 (1086)
.+|.|. ..+|.| ....|.+||..... ....+.||.++|+|+.|-|+.+. .++++|+.|+.|++|.++.. .++
T Consensus 20 ~sw~~~-~~vafG-a~~~Iav~dp~k~~---i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i 94 (764)
T KOG1063|consen 20 SSWGPG-GLVAFG-AGPAIAVADPEKIL---IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI 94 (764)
T ss_pred cccccc-ceEEec-CCceEEEeCcccce---eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence 345443 355555 45679999987652 23368899999999999988761 15899999999999998843 345
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCC--ceEEEEEec-CCCEEEEEeeCCCC
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKEG 547 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~--~i~~~~~s~-d~~~l~~~~~~~~~ 547 (1086)
.++.+|...+.++.- ......+.+.|+++.+||.+..+. ...+....+ -..++++.+ .+.++.+++.+
T Consensus 95 ~~~~g~~~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs--- 167 (764)
T KOG1063|consen 95 YTIQGHCKECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS--- 167 (764)
T ss_pred EeecCcceeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence 677777766666532 111222337999999999855441 112222222 234566666 45555555532
Q ss_pred ceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCC---EEEEEECCCcEEEEEcCCCe-----------------
Q 001396 548 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ----------------- 605 (1086)
Q Consensus 548 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~----------------- 605 (1086)
+..|.++.-... ..+..+.||. +.|.+++|...+. +++++|.|..||||.+.-+.
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 566777765433 5567788888 9999999987654 77889999999999875322
Q ss_pred ----eEEEEc--------CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee--ecc-----ccccceeeeEE
Q 001396 606 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----VLSDNLRKLSV 666 (1086)
Q Consensus 606 ----~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----~~~~~v~~~~~ 666 (1086)
....+. .-++...|+++.|+|.+..|++++.|.++.+|...+..-+. ..+ +.......
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g--- 321 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG--- 321 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceee---
Confidence 111111 12456789999999999999999999999999877653222 221 11111222
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEe
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 746 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 746 (1086)
+..+|++..+++-+..|..++|. +.+.......... .+|...|+.++|.|.|.++++.
T Consensus 322 -------------------~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 322 -------------------GLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred -------------------EEEcCCCCEEEEecccCcEEEEe--ccCccceeecccc-ccccccceeeeecCCCCEEEEe
Confidence 22267888899999999999998 2233333332222 4699999999999999999999
Q ss_pred eccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEcc
Q 001396 747 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVM 825 (1086)
Q Consensus 747 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~ 825 (1086)
+.|.+-|++---.++. -|.- +.... -|...+.|++|-+....+++|.| ..+|+|+..
T Consensus 380 s~DQTTRlFa~wg~q~-------------~wHE-----iaRPQ----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQ-------------EWHE-----IARPQ----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccceeeeccccccc-------------ceee-----ecccc----cccccceeeehccCCceeeecccceeeeeecCc
Confidence 9999988874221100 0221 11111 27888899999885555666654 668888752
Q ss_pred C-------------------------------------------ceE---------------------------------
Q 001396 826 T-------------------------------------------FKT--------------------------------- 829 (1086)
Q Consensus 826 ~-------------------------------------------~~~--------------------------------- 829 (1086)
. |..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 1 110
Q ss_pred EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 001396 830 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904 (1086)
Q Consensus 830 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i 904 (1086)
++.+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|.-.|+.|+|||||++|+++|.|+++
T Consensus 518 v~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 113467888999999999 999999987653 78999999988888999999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCc--cceec-cccCCccCEEEEEE
Q 001396 905 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVPISQATF 980 (1086)
Q Consensus 905 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~v~~l~f 980 (1086)
.+|........... ....+.|.. -|.++.|+||++++|+ +.|.+|+||..... +.+.. -...+...|+.+++
T Consensus 597 sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred Eeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 99998654432222 223444443 5899999999999998 68999999999877 55544 23456889999999
Q ss_pred eC-----CCCEEEEEECCCcEEEEEcCCCcee---eeeccccccCCC-CccCcccceEEEECCC---------CCCEEEE
Q 001396 981 SC-----DCRMVFTSFVDGTLSIHEASNLEVQ---CRILSTAYLRPT-TSCLHVYPHAIAAHPL---------KPTQFAV 1042 (1086)
Q Consensus 981 s~-----dg~~l~s~~~Dg~v~vWd~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~p~---------~~~~l~~ 1042 (1086)
.| .+..+++|-..|.|.+|....-... ..+.....++.. .+... +..+.|.|- +...|++
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a--V~rl~w~p~~~~~~~~~~~~l~la~ 750 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSA--VNRLLWRPTCSDDWVEDKEWLNLAV 750 (764)
T ss_pred eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHh--hheeEeccccccccccccceeEEee
Confidence 87 2337788889999999997622211 111111111111 11222 345677762 2345799
Q ss_pred EeCCCcEEEEccC
Q 001396 1043 GLTNGEVYVIEPN 1055 (1086)
Q Consensus 1043 ~~~dg~v~vw~~~ 1055 (1086)
|++|..++++++.
T Consensus 751 ~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 751 GGDDESVRIFNVD 763 (764)
T ss_pred ecccceeEEeecc
Confidence 9999999999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=315.04 Aligned_cols=583 Identities=16% Similarity=0.235 Sum_probs=398.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
++..+..|..++|+|... ++.++-..|.|.+||.+-|.++.. +.+|.++|..++|+|++.
T Consensus 5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP 64 (1202)
T ss_pred hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence 455567899999999987 588888899999999999998876 778999999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
++++|++|..|+||+..+.+++. ++.||-+.|..+.|++.-. +++|+|+|.+|+||++.+++++..+.||...|.
T Consensus 65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 99999999999999999987766 6889999999999999877 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
|..|+|.+| .++++|-|.+||+||+...+....-.+ ++.-...+..+. .-++-...--...
T Consensus 140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH 200 (1202)
T ss_pred eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence 999998765 899999999999999876544322211 000001111110 0011001112345
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.+.||. ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|++|
T Consensus 201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 677887 89999999999999999999999999999765543333344556679999999999999999999999999
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
|+...+.+..++...+..+.++..|. .++++. +.|+.+.+|.++.
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~----------------------lNLfAA-gHDsGm~VFkleR------------ 322 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPE----------------------LNLFAA-GHDSGMIVFKLER------------ 322 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCC----------------------cceeee-ecCCceEEEEEcc------------
Confidence 99999999999988899999988754 444443 3445556666541
Q ss_pred CcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC-CCCCCeeEE
Q 001396 724 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS-NSQEAVPCF 802 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~v~~l 802 (1086)
..++ .+++ +..++..- +..|+-+|+....- .....+... ....++.++
T Consensus 323 ----Erpa--~~v~--~n~LfYvk-d~~i~~~d~~t~~d----------------------~~v~~lr~~g~~~~~~~sm 371 (1202)
T KOG0292|consen 323 ----ERPA--YAVN--GNGLFYVK-DRFIRSYDLRTQKD----------------------TAVASLRRPGTLWQPPRSL 371 (1202)
T ss_pred ----cCce--EEEc--CCEEEEEc-cceEEeeecccccc----------------------ceeEeccCCCcccCCccee
Confidence 1112 2222 22233333 66777777654321 111111110 124577889
Q ss_pred EeecCCCEEEEEe---CCeEEEEEccCceEEEE---EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 803 ALSKNDAYLFSAS---GGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 803 ~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
.++|....+..++ .|...++.+........ -........++-... +++.+---.+..+.+=++.+ +..+.+
T Consensus 372 sYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N-~vtkkl 448 (1202)
T KOG0292|consen 372 SYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKN-KVTKKL 448 (1202)
T ss_pred eeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccc-hhhhcc
Confidence 9999776666664 36666665543211000 000111222222222 22333222244455555443 222222
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEE
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 956 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw 956 (1086)
.-- ..+..+-+.-+|.+|+. ....|.++|++..+... .++. ..+..+.||+|+.++|.-+..+|.+.
T Consensus 449 ~~~-~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~--si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~ 515 (1202)
T KOG0292|consen 449 LLP-ESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVG--SIKV--------SKVKYVVWSNDMSRVALLSKHTITIA 515 (1202)
T ss_pred cCc-ccccceeeccCccEEEE--cCCeEEEEEeecceEEE--EEec--------CceeEEEEcCccchhhhcccceEEEE
Confidence 211 23455667777776664 33459999999754322 2222 15788999999999999888899999
Q ss_pred EcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc--eeeeeccccccCCCCccCcccceEEEEC
Q 001396 957 EAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAH 1033 (1086)
Q Consensus 957 d~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1086)
+.+ -+.+.+ -| .-+|.+-+|..||-+|.+... .|+ |-+.+|. .+.++. .+++++.+
T Consensus 516 ~kk-L~l~~s---ihEtiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTLd-----------~~iyitkv--- 574 (1202)
T KOG0292|consen 516 DKK-LELLCS---IHETIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTLD-----------KPIYITKV--- 574 (1202)
T ss_pred ecc-hhheec---chheeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEecc-----------cceEEEEe---
Confidence 865 233332 23 557888899999988887753 343 3333332 222332 34555555
Q ss_pred CCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1034 PLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1034 p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.|+.+.+-..|+.+.+.++...+
T Consensus 575 --~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 575 --KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred --eCCEEEEEecCCCeEEEeechHH
Confidence 47889999999999998886554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=306.65 Aligned_cols=465 Identities=15% Similarity=0.207 Sum_probs=344.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|+..|.++.|+|....++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999988777 5666778999999998877 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
..|++.++.|..|.+.|++++.+|.. .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999998754 69999999999999999875 45678999999999999999 6678888887
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC--CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
|++|.+|.+.+..+..++++|. ..|+++++-+-| +++++|++|.+|+|||.++..+++++.+|.+ .|..
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~ 232 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF 232 (794)
T ss_pred ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence 7789999999999999999998 999999997654 7999999999999999999999999998755 5899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
+.|+|.-..+++|+.||+++||+..+-+....+.-.-+.
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR----------------------------------------- 271 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER----------------------------------------- 271 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence 999999999999999999999998876555444433333
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCC
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
+.+++..+.+..++.|..+|.+.+=
T Consensus 272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~-------------------------- 296 (794)
T KOG0276|consen 272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK-------------------------- 296 (794)
T ss_pred -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence 4444444444445555555544431
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC--CeEEEE------EccCceEEE----EEcCCCCCeEEEEEcCCC
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD 849 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d 849 (1086)
.......+..++.|+.+-+... -.+.+- ++..|+.+. .+....-....++-+| +
T Consensus 297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N 362 (794)
T KOG0276|consen 297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N 362 (794)
T ss_pred -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence 0111122333333433222211 001111 222233221 1111111234677889 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
|+++++++ ||.-.||..-.- -..+.+.-....|++|....++--.++.|+++ +..+..+ .+..
T Consensus 363 GrfV~Vcg-dGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k--si~~------- 425 (794)
T KOG0276|consen 363 GRFVVVCG-DGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK--SIRP------- 425 (794)
T ss_pred CcEEEEec-CccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc--cccc-------
Confidence 98888765 888888863211 11245566778999998888888778889988 3322111 1111
Q ss_pred CCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 930 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
-..+.+--.|.+|.+..++.+++||..+++.++.+.. ....+.|+.+|.+++.++.|. .++..+
T Consensus 426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc-eeEEEe
Confidence 0112333456677778899999999999999887432 456789999999999887664 455443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=283.47 Aligned_cols=295 Identities=16% Similarity=0.188 Sum_probs=247.4
Q ss_pred cccccceEEEEEecCC-ceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE
Q 001396 725 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 803 (1086)
Q Consensus 725 ~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~ 803 (1086)
.+|.+.|..++..+.+ ..++.++.|..+.+|++... |...|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 4599999999998874 55667788999999998754 2333432322 33 4999999999
Q ss_pred eecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc--cc
Q 001396 804 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 880 (1086)
Q Consensus 804 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~--h~ 880 (1086)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|++|+... .+..++.. |+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 899999999999999999985 44444443 37
Q ss_pred CCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEE
Q 001396 881 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 957 (1086)
Q Consensus 881 ~~v~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd 957 (1086)
+-|.|+.|+|+ ..+++++|.|++|++||+.+ .+..+.+.+|.. .++.+++||||.+.++ +.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 335556666665 8999999999999999 6899999999
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1037 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1086)
+..++++.. .+|...|.+++|+|+.-.|+.+ .+-.|+|||++++..+..+.+-..-+ ........+++++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999999764 4679999999999987666655 56679999999999998877443333 2234456778999999 89
Q ss_pred CEEEEEeCCCcEEEEccC
Q 001396 1038 TQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1038 ~~l~~~~~dg~v~vw~~~ 1055 (1086)
..|+.|..||.|++|++.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=304.82 Aligned_cols=345 Identities=19% Similarity=0.269 Sum_probs=289.0
Q ss_pred CccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCC--CceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
+|....+.+. |+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......++ .|...-- .-...+..|
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdV 238 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDV 238 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCc
Confidence 5666777777 9999999999997765799999999999999874 1111100000 0000000 011134689
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999988653 33 6789999999999999999 89999999999999999999999
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.-|..+-..+.|-. ...+++++.|+.|+++.+...++..++.+|.++|.++.|.|.|.+|++++. |++++|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999998866677642 247999999999999999999999999999999999999999999999986 888999
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCC---------CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|+.........++.|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|++++|
T Consensus 386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999998999999888 899999999975 47899999999999999999999999765 457999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~------------------------------------------------- 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ------------------------------------------------- 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence 9999999999999999999999987776554
Q ss_pred ceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 705 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 705 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
..+.|..+.|+.+|..+.++..||.+++.|+
T Consensus 492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2334677888888888888888888887765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=298.51 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=268.1
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
+..+.+.||...|+.+-|+|+-. +.++++.|++|++||..+|+.... +.||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 55677889999999999999986 799999999999999999998765 8899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+..|++||+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. +++|++.|.+|+.|++.+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233336779999999999999998 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC---------------CEEEEEee
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT 543 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~~ 543 (1086)
...|..+.. ..||.++++++.|.+|++|-+.+..+...+..|..+|.+++|.|.. .++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999987 6689999999999999999999999999999999999999997732 36666665
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
|+.|++||+.++.++.++.+|. ..|..++|+|.|+||+++.+|+++++||++++++...+..+.+ .+.++.
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 7889999999999999999999 9999999999999999999999999999999999999998766 489999
Q ss_pred EecCCCEEEEEECCCcEEEEEC
Q 001396 624 FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+.+..++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999964
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=281.81 Aligned_cols=539 Identities=12% Similarity=0.152 Sum_probs=384.2
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
+-+-+.-+.|+. -=..+-+-|.|..+..++ +.+.+++++...+.. +.||+..|.|+
T Consensus 55 ~LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~ 110 (626)
T KOG2106|consen 55 KLEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCM 110 (626)
T ss_pred eeEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEE
Confidence 334445555664 223455677776433333 456677775533332 77999999999
Q ss_pred EECCCCCEEEEEeCCC--------EEEEEEecCCCccccceEeccccccEeEEEecCCCC--cEEEEEEeCCCcEEEEeC
Q 001396 397 VWSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 397 ~~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~--~l~l~s~~~d~~i~iwd~ 466 (1086)
+.+||.-++|+|-..| .++|||..+-..+ ..+......|.|++|++-.. .+..+--+.+..+.|||.
T Consensus 111 ~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW 187 (626)
T KOG2106|consen 111 AVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW 187 (626)
T ss_pred eecCCceeeccCcccccCCCcCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhc
Confidence 9999999999874433 5999997764433 35666677899999998543 223333456677999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE---ecC-CCCceEEEEEecCCCEEEEEe
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
..+......+..+..|....|+|... -++.....|.+.+|+++.+..... +.. ...-|.+++|.++|..+-.
T Consensus 188 qk~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-- 263 (626)
T KOG2106|consen 188 QKKAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-- 263 (626)
T ss_pred hhhhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee--
Confidence 99988888887888899999988643 455556678999999988765443 222 2257999999999986643
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
|.++.|.||+..+.+..+....|. +.|.+++.-.+|. |++|+.|..|..|| ..-+.++..+.+.....+..+
T Consensus 264 ---DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 264 ---DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred ---cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEE
Confidence 337889999998877776666655 9999999999986 55599999999999 555556555555444556655
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 623 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+-...+ |++|+..+.|..=.++++-.+..
T Consensus 336 ~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v------------------------------------------------- 364 (626)
T KOG2106|consen 336 AEGKGD--ILVGTTRNFILQGTLENGFTLTV------------------------------------------------- 364 (626)
T ss_pred ecCCCc--EEEeeccceEEEeeecCCceEEE-------------------------------------------------
Confidence 543322 66776655554433332211110
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
.+|......++..|+...+++++.|+.+++|+ ..+ ..|...
T Consensus 365 ----------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~-- 405 (626)
T KOG2106|consen 365 ----------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI-- 405 (626)
T ss_pred ----------------------EecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE--
Confidence 12556677788889999999999999999997 111 123211
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
-..+..|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..+++++.|+| +|.+||+|+.|+.
T Consensus 406 ------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 406 ------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNH 470 (626)
T ss_pred ------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCe
Confidence 35678899999999 888887 69999999999666555444 88999999999 9999999999999
Q ss_pred EEEEEcCCce-eEEEe-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee---------ee---eeccCCCc
Q 001396 862 ILIYNARSSE-VISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVM 927 (1086)
Q Consensus 862 v~iwd~~~~~-~~~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~ 927 (1086)
|+||.+.... ..... +.|..+|+.+.||+|+++|.+-+.|-.|..|.-..-..... .+ +....+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~-- 548 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG-- 548 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--
Confidence 9999987643 32222 22447999999999999999999999999994332111110 00 111111
Q ss_pred cCCCCceEEEEecCCCEEEEEe-CCeEEEEEcCCccc--eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 928 TLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 928 ~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
.....+..++-|.+.+++|++. .|.|++|...--+. ......+|.+-|++++|+-+..++++.+.|.+|..|++
T Consensus 549 s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 549 SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 1113567778888889999974 58999999874332 22236689999999999999999999999999999986
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=285.58 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=288.6
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 509 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 509 (1086)
.|..|++.|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|...|+++.| +.+|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 5789999999999999777 8999999999999999999999999999999999999 45889999999999999999
Q ss_pred cCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 510 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 510 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+++++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999999888889999999999999999986 7789999999988889999988 99999999999999999
Q ss_pred EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccC
Q 001396 590 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 590 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
+..||+|++|++.+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 99999999999999999999876553 3567899999999999999998888776655533321110
Q ss_pred CCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc
Q 001396 670 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 749 (1086)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 749 (1086)
.+..+.....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCce
Q 001396 750 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 828 (1086)
Q Consensus 750 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~ 828 (1086)
.....|..+.++..-.+.|+|+ ||+|.|||+...+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0223344455566667778888 8999999998877
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 829 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 829 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|++++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 666555 888899999986 46889999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001396 909 VD 910 (1086)
Q Consensus 909 ~~ 910 (1086)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 74
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=287.11 Aligned_cols=335 Identities=15% Similarity=0.191 Sum_probs=290.7
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...+.+|.+|+++|.+++.+|+.+ ++|+|+.|....||+..+|..... +.+|...|+++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~ 113 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS 113 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence 345678899999999999999776 899999999999999999997765 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
||.||.+||+|+.+|.|+||+..++.... .+.+..+.+.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.|
T Consensus 114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence 99999999999999999999999987655 4445667788999999888 899999999999999999888999999
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
|+.++++=.|.| +|+.++++..||+|++|+..++.+....... .....++.++.++..++.|.. ++.+++-+.
T Consensus 189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~ 262 (399)
T KOG0296|consen 189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN 262 (399)
T ss_pred CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence 999999999955 6899999999999999999999988877643 446778899999999998876 667888888
Q ss_pred CCCeeeeEEec--------ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 557 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 557 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.+|+.+....+ +......|.++.++..-+..++|+-||+|.|||+...++........ .|..+.|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-c
Confidence 88888777663 22122345555566666788999999999999999888877776553 489999998 7
Q ss_pred CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceee
Q 001396 629 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~ 708 (1086)
.+|++++.+|.|+.||.++++......+|...|.+++++ |+.+++++++.|++.++|+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence 899999999999999999999999999999999999996 7889999999999999987
Q ss_pred e
Q 001396 709 P 709 (1086)
Q Consensus 709 ~ 709 (1086)
.
T Consensus 397 v 397 (399)
T KOG0296|consen 397 V 397 (399)
T ss_pred c
Confidence 4
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=288.69 Aligned_cols=298 Identities=18% Similarity=0.259 Sum_probs=269.0
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
..|-++.+.+.||.+.|.|+++.|-++ ++++|+.|++|+|||+.+|++..+ +.||-..|.
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr 197 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVR 197 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheee
Confidence 445688899999999999999999887 699999999999999999998876 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
.+++|+-..||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-+ .|++|+.|.+++|||+++...+..
T Consensus 198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred eeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEE
Confidence 99999999999999999999999999998887 5789999999999999988 899999999999999999999999
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
+.||..+|.++.+.+. ...+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|.-|
T Consensus 273 l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w 345 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQW 345 (460)
T ss_pred ecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceec
Confidence 9999999999988553 358999999999999999999999999999999999999999999999874 359999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc---CCC---CCCCCceEEEecCC
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKNG 628 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~ 628 (1086)
++..|..+..+.+|. ..|++++.+.|+ ++++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|
T Consensus 346 ~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred cCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999999999988888 899999998875 88999999999999999987665542 111 22457899999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 001396 629 TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~ 648 (1086)
..|+++..|.+|++|.-+..
T Consensus 422 ~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEeccCCcceEEEecccc
Confidence 99999999999999986643
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=267.42 Aligned_cols=296 Identities=17% Similarity=0.259 Sum_probs=253.1
Q ss_pred ccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccc
Q 001396 493 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQL 570 (1086)
Q Consensus 493 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~ 570 (1086)
.-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ ++.+|.+|.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~- 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT- 83 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC-
Confidence 34899999999999999999999999999999999999999999999987 5579999999765 588999988
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe
Q 001396 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 650 (1086)
Q Consensus 571 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 650 (1086)
..|.++.|..+|+++++||+||+++|||++...+.+.+... .+|+++..+|+...|+++..+|.|++||+.+...
T Consensus 84 --kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 --KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred --CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 89999999999999999999999999999996666666543 5699999999999999999999999999987643
Q ss_pred eeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccc
Q 001396 651 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 730 (1086)
Q Consensus 651 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 730 (1086)
...+- |+ ....
T Consensus 159 ~~~li-------------------------------------------------------------------Pe--~~~~ 169 (311)
T KOG0315|consen 159 THELI-------------------------------------------------------------------PE--DDTS 169 (311)
T ss_pred ccccC-------------------------------------------------------------------CC--CCcc
Confidence 32221 11 2356
Q ss_pred eEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 731 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
|+++.+.|||..++++...|..++|++...... ....+ +. +...|..-+..+.+|||+++
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l~P-----~~----k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SELEP-----VH----KFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccceE-----hh----heecccceEEEEEECCCCcE
Confidence 889999999999999999999999998653210 00000 11 11248899999999999999
Q ss_pred EEEEe-CCeEEEEEccCc-eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE
Q 001396 811 LFSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 811 l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~ 888 (1086)
||+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|.....|++.
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99998 899999999988 66778889999999999999 9999999999999999999999999999999998888876
Q ss_pred e
Q 001396 889 S 889 (1086)
Q Consensus 889 s 889 (1086)
.
T Consensus 309 n 309 (311)
T KOG0315|consen 309 N 309 (311)
T ss_pred e
Confidence 4
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=279.85 Aligned_cols=550 Identities=12% Similarity=0.119 Sum_probs=392.5
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
...|.++|||.+.+.||.+-.+|.|.||++..+=... ..+.++. ..|.+++|++.++ |.|.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 3789999999999999999999999999999864333 2455654 4799999996664 88999999999999999
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE--EecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+.... .+....+++.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997754 589999999977777776665544 34455679999999999999999986
Q ss_pred CceeEEEEeCCCCeeeeEEec----cc-ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 547 GESFLVEWNESEGAIKRTYQG----LQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
|+.|++||..++..+..... .. ....-|.++.|-.+ ..|++|...|+|.+||...+.+++....+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 88899999999887662221 11 01245778888766 4799999999999999999999999887744 5999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++..+++.++++++.|+.|.-+...+...-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------- 280 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------- 280 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence 999999999999999999988876654221
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCC
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
|-.. .+...|...|++++..++ .+++++.|..+.+-.....+. .+-
T Consensus 281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~h-- 326 (691)
T KOG2048|consen 281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MDH-- 326 (691)
T ss_pred -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hhh--
Confidence 1100 011237778888888877 688888888877643222100 000
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE---------EEEEcCCCCCeEEEEEcCCCCCE
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNV 852 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~ 852 (1086)
.+.. ....-..+...|..++++......+.+|.+.+... .+........|.|.+.|| +|++
T Consensus 327 ---~~~~------~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 327 ---RQKN------LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred ---hccc------cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0000 00011134556667777777788888998876521 222233556799999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCceeEE-----EeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeeccCCC
Q 001396 853 IAIGMDDSTILIYNARSSEVIS-----KLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 926 (1086)
Q Consensus 853 lasg~~dg~v~iwd~~~~~~~~-----~l~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 926 (1086)
||.+. -..++||.+...-.+. ......-....+.|+-|+..++.++ .+..+.+.++++...+....++.. ..
T Consensus 397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~ 474 (691)
T KOG2048|consen 397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK 474 (691)
T ss_pred EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence 99876 4468888887532221 1222334577889999998888888 778888888887654443333332 11
Q ss_pred ccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC-CCCEEEEEECCCcEEEEEcCCC
Q 001396 927 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 927 ~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
. +.|..++.||||.+||+ +..+.|.+|++++++.-.. ...-...|+.+.|+| +-..|+.+..|+.|.-+|++..
T Consensus 475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l-~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLL-KVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecc-hhccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 1 47999999999999999 7899999999998875443 212357899999995 5567888889999999999554
Q ss_pred ceeeeecccc--ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1005 EVQCRILSTA--YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1005 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++ .++.... .+|.......-....+.|+|.+ ...+...+.+-+++.|..
T Consensus 551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence 42 2222111 1111111111223567788854 444445666777777764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=266.25 Aligned_cols=292 Identities=22% Similarity=0.340 Sum_probs=241.4
Q ss_pred eeeeeccCCCCceEeeecCC-CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spd-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.++.+.+|++.|+.++|+|- |. +||+++.|+.|+||+...+.-.. ....+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~---------------ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWT---------------CKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEE---------------EEEeccccchheeeeeee
Confidence 46788999999999999998 86 89999999999999988543221 122234689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEe
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~---~~~~~~ 475 (1086)
+|.|++||+++.|.++.||.-..++ +.....+.||...|.+++|+++|. +|++++.|++|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 9999999999999999999977654 556668999999999999999999 9999999999999998754 467889
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC---CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
+.|...|..+.|+|..+ +|+++|.|.+|++|+-.. -.+..++..+...|.+++|++.|..|++++. ++.+.
T Consensus 147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 99999999999998775 999999999999997663 2357788999999999999999999999986 77899
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe------eEEEEcCCCCCCCCceEEEec
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||-..+. +.+ .|...++.+.|. ...|++++.|+.|++|.-...- ++... .+.+...|+++.|+|
T Consensus 221 Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 221 IWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP 290 (312)
T ss_pred eeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence 9985421 222 124789999998 4589999999999999766421 11111 122344799999999
Q ss_pred C-CCEEEEEECCCcEEEEECC
Q 001396 627 N-GTLLAVIANENRIKILETP 646 (1086)
Q Consensus 627 ~-~~~l~~~~~dg~i~iw~~~ 646 (1086)
. .++|+++++||.+++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 4 7899999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=295.29 Aligned_cols=506 Identities=16% Similarity=0.195 Sum_probs=360.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+...+..|..++|+|...+++++-..|.|++||.+-+.++. .|.+|.++|..++|+|++. ++||||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567889999999999999999999999999999988777 6889999999999999999 999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
..+.+++.++.||.+.|..+.|++ .-.+++++|.|.+|+||++.+.+++..+.+|.+-|.|..|+|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999976 4469999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEE---EEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
|.+|++||+..-+....-.+ ++.=...+..+ +-|+.|- -....+.+| ...|+-+
T Consensus 156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa 212 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA 212 (1202)
T ss_pred --cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence 77899999865332211111 11000111111 1122222 223344544 4569999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCC--eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 623 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
+|+|.-.++++|++|..|++|.+...+ .+.+.++|.+.|.++-|+ |...++++.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE 270 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE 270 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence 999999999999999999999998664 457789999999999997 56788999999
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 780 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1086)
|+++++||+......++... ...+...++..|..+.++++... -+.||.+..
T Consensus 271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDs-Gm~VFkleR--------------------- 322 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDS-GMIVFKLER--------------------- 322 (1202)
T ss_pred CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCC-ceEEEEEcc---------------------
Confidence 99999999986665554432 56788999999999965555544 455555432
Q ss_pred CCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE--EEEEcCC---CCCeEEEEEcCCCCCEEEE
Q 001396 781 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI 855 (1086)
Q Consensus 781 ~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las 855 (1086)
+.+ +.+++ +..|....+..|+-+|+.+.+. +..++.. ..+..++.++|..+..+++
T Consensus 323 ---------------Erp--a~~v~--~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 323 ---------------ERP--AYAVN--GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ---------------cCc--eEEEc--CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 122 23333 3445555688999999987543 3344433 3678999999955555554
Q ss_pred EeCC-CeEEEEEcCCceeEEEec---c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 856 GMDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 856 g~~d-g~v~iwd~~~~~~~~~l~---~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
...| |.-.++.+...... ... . .......+-.+ -.++.+---.+..+.+-++.....+ .++.+.
T Consensus 384 s~~~n~~y~L~~ipk~~~~-~~~~~~~~k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------ 452 (1202)
T KOG0292|consen 384 SNLDNGEYELVQIPKDSDG-VSDGKDVKKGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------ 452 (1202)
T ss_pred eccCCCeEEEEEecCcccc-cCCchhhhcCCCCceEEEE-ecceEEEEecCcceEEecccchhhh---cccCcc------
Confidence 4433 45556655432110 000 0 11122333333 2233333333555666666653311 122221
Q ss_pred CCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001396 931 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 931 ~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
.+..+-+..+|.+|+. ....|.+||+.....+.++. -..|..++||.|..+++--+. .+|.|.+.. .++++++
T Consensus 453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk-L~l~~si 525 (1202)
T KOG0292|consen 453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK-LELLCSI 525 (1202)
T ss_pred -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc-hhheecc
Confidence 2445666666665554 55679999999888777654 468999999999998886654 477777754 4444443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=271.90 Aligned_cols=289 Identities=19% Similarity=0.256 Sum_probs=252.9
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
.+.+|+++|..+.|+|+|. ++|+|+.|..|.+|++....... ..+++|.++|..+.|.+|+
T Consensus 42 ~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCC
Confidence 4689999999999999998 69999999999999976543321 1277999999999999999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
..|++++.|.+|+.||+++|++++ .+++|..-|+++.-+.-|.. ++.|++.|+++++||+++..+++++. ..-.+
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql 177 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL 177 (338)
T ss_pred CEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeE
Confidence 999999999999999999999877 57899999999996666665 78899999999999999999988885 55678
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC----
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---- 558 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---- 558 (1086)
++++|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+- +..+++||.+.
T Consensus 178 tAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 178 TAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPS 251 (338)
T ss_pred EEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCC
Confidence 889884 45668999999999999999999999999999999999999999999999876 78899999874
Q ss_pred CeeeeEEecccccC--CceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 559 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.+++..++++. |. .....++|+|++..+-+|+.|..+++||......+..+++|.+ .|+++.|+|...+|.+++.
T Consensus 252 ~R~v~if~g~~-hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 252 QRCVKIFQGHI-HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CceEEEeecch-hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEecc
Confidence 34577888765 22 3355788999999999999999999999999999999987754 5999999999999999999
Q ss_pred CCcEEEEE
Q 001396 637 ENRIKILE 644 (1086)
Q Consensus 637 dg~i~iw~ 644 (1086)
|.+|.+=+
T Consensus 329 dk~i~lge 336 (338)
T KOG0265|consen 329 DKTIYLGE 336 (338)
T ss_pred CceeEeec
Confidence 99988743
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=287.09 Aligned_cols=279 Identities=20% Similarity=0.309 Sum_probs=252.8
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|++++|+.+|. +||+|+.||.++||+... .++.+ +..|.++|.++.|+.+|.||+++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-~l~~t-------------------l~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-NLIST-------------------LGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCc-hhhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence 4899999999998 799999999999999754 44433 77899999999999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
+.|+++.+||..+|.... .+.-|..+-.+|.|-.+.. +++++.|+.|+|+.+...+++.++.+|.++|.++.|+
T Consensus 295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999987655 4667888878899987765 8999999999999999999999999999999999995
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC---------CEEEEEeeCCCCceeEEEEeCCCC
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
+ .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +.+|++||+..+
T Consensus 369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g 442 (524)
T KOG0273|consen 369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG 442 (524)
T ss_pred C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence 4 66899999999999999999999999999999999999999965 35777765 788999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
.++.+|..|+ .+|++++|+|+|+++++|+.||.|.+|+.++++..+.....+. |..++|+.+|..+..+..|+.
T Consensus 443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCCC
Confidence 9999999998 9999999999999999999999999999999999999976544 899999999999999999999
Q ss_pred EEEEECC
Q 001396 640 IKILETP 646 (1086)
Q Consensus 640 i~iw~~~ 646 (1086)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=262.77 Aligned_cols=293 Identities=15% Similarity=0.201 Sum_probs=254.5
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
..+|....++|.+|.++|.++.|.-||+| ..+++.|.+|++|+...|.++++ +.+|...|
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EV 62 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEV 62 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCcee
Confidence 34677788899999999999999999997 66777889999999999999987 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC--Cce
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSR 471 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~--~~~ 471 (1086)
..++.+.|...+++|+.|..+.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ -++
T Consensus 63 lD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 63 LDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred eeccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCc
Confidence 999999999999999999999999999999887 6889999999999999999 999999999999999875 467
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
++.+......|.++.+ .+..+++|+.||++|.||++.+..... .-+.+|++++|++|++..++++- ++.+
T Consensus 138 iQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stl 207 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTL 207 (307)
T ss_pred cchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----ccee
Confidence 8888888899999987 446899999999999999988766544 34568999999999999998886 7789
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
++.|-.+|+++..+++|......+ .++++.....+++|++||.|++||+.....+..+..+.. ..+..++++|.-..+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccce
Confidence 999999999999999998433333 445677778999999999999999999999999987654 347899999987777
Q ss_pred EEEECCCcEEEEE
Q 001396 632 AVIANENRIKILE 644 (1086)
Q Consensus 632 ~~~~~dg~i~iw~ 644 (1086)
+++... .+..|.
T Consensus 286 ~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 286 ITATGH-GDLFWY 297 (307)
T ss_pred eEecCC-ceecee
Confidence 776653 455554
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=270.47 Aligned_cols=523 Identities=14% Similarity=0.205 Sum_probs=377.4
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--------cEEEEeC
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA 466 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--------~i~iwd~ 466 (1086)
.+-+-|.|..+..... .+.+++++...+. -+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA~--V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVAA--VGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEecc--EEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 4567788877665433 3566666553211 3669999999999999865 566554333 5999998
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEE--EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCC-EEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~ 543 (1086)
.+-..++.+......|++++|++...|.++... +.+..+.+||+..+.........+..+....|+|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888888889999999988888777665 4556799999998888777777788899999999655 555554
Q ss_pred CCCCceeEEEEeCCCCeeeeE---EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 544 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
.+.++.|+.+.+...++ +..+. +..|.+++|.++|. +++|..+|.|.||+..+.+..+....|. ..|.
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~ 291 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVF 291 (626)
T ss_pred ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceE
Confidence 77899999998876554 44444 46799999999874 7899999999999998888777766553 4689
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
+++.-.+|.+|- |+.|..|..|| ..-+.++..+
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~e--------------------------------------------- 324 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETE--------------------------------------------- 324 (626)
T ss_pred EEEEecCccEee-cCccceEEecc-cccccccccc---------------------------------------------
Confidence 999999997665 99999999999 2222221111
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 780 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1086)
+|+ ..+.|+.++-... -++.++..+.|..=.+ .
T Consensus 325 ---------------------lPe--~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~----------------------~ 357 (626)
T KOG2106|consen 325 ---------------------LPE--QFGPIRTVAEGKG--DILVGTTRNFILQGTL----------------------E 357 (626)
T ss_pred ---------------------Cch--hcCCeeEEecCCC--cEEEeeccceEEEeee----------------------c
Confidence 111 2223333322211 1555554444332111 1
Q ss_pred CCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 781 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 781 ~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
.+..+.. .+|......++..|+...+++++ |+.+++|+ ..+...+.. ...++.|+.|+| .| .+|.|+..
T Consensus 358 ~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~ 427 (626)
T KOG2106|consen 358 NGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT 427 (626)
T ss_pred CCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence 1111111 14777888999999998888887 89999999 444444433 457889999999 77 99999999
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEe
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.++.+...-. .+....+ .+|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence 9999999999666554444 88999999999999999999999999999987553322 2222333 279999999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCccceec-----------------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 940 KDQTRFLL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 940 ~dg~~l~~-~~d~~i~vwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+|+++|.+ +.|-.|..|....-..+.. ....|...|..++-|.+.+++|+|...|+|++|..
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 99999999 7888899994432221111 11235667777888889999999999999999999
Q ss_pred CCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1002 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
+--+..+.+- +...|+..+ .+++|.-.| ..|++.+.|.+|..|++
T Consensus 581 Pc~s~rA~~h-----e~~ghs~~v--t~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 581 PCSSPRAPSH-----EYGGHSSHV--TNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccCCCcccce-----eecccccee--EEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 8766654433 222233434 477787644 56666669999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=269.94 Aligned_cols=287 Identities=18% Similarity=0.300 Sum_probs=250.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+.||++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .++++|.|.+|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 488999999999999999999999999999999976543 34446889999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|+++|++++.+++|...|+++... ..+..++.+++.||++++||++..+...++.. .-+++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence 999999999999999999999843 33456788899999999999998777666532 347899999999999999987
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCCCCC--
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE-- 618 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~-- 618 (1086)
++.|.+||++.+.....+.||. +.|..+..+++|.++++-+.|.++++||++.. .++..+.++.+.-+
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 5669999999999999999999 99999999999999999999999999999853 34666665543322
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceec
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 698 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 698 (1086)
...++|+|++..+..|+.|..+++||......+..+.+|...|+++.|.| ....+.++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~ 326 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC 326 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence 35689999999999999999999999999999999999999999999985 45567777
Q ss_pred cccCccce
Q 001396 699 EAENKSEV 706 (1086)
Q Consensus 699 ~~d~~i~v 706 (1086)
++|.+|.+
T Consensus 327 ~sdk~i~l 334 (338)
T KOG0265|consen 327 SSDKTIYL 334 (338)
T ss_pred ccCceeEe
Confidence 77777655
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=278.37 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=264.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||.+.|.+++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 77899999999999999999999999999999999999755 6889999999999999999 899999999999999
Q ss_pred CCC-CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 466 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 466 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 67888999999999999997764 69999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC---------------CCEEEEEECCCcEEEEEcCCCeeEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
+.++++|-..++++...++.|+ .+|.+++|.|. ++++.+++.|++|++||+.++.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 7789999999999999999998 89999999773 25888999999999999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCC
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 689 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s 689 (1086)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh---------------------- 385 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH---------------------- 385 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence 997754 69999999999999999999999999999999999999999999999986
Q ss_pred CCcccceeccccCccceee
Q 001396 690 EDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 690 ~d~~~l~s~~~d~~i~vw~ 708 (1086)
.+..++++|+-|.++++|.
T Consensus 386 ~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCceEEeccccceeeeee
Confidence 3344899999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=314.82 Aligned_cols=294 Identities=21% Similarity=0.352 Sum_probs=257.5
Q ss_pred eeeeccC-CCCceEeeecCCCceEEEEEeccCcEEEEecCCCc--eeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 321 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 321 ~~~l~~h-~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.+.+| ...|.|+.|||||++ +++++.|+.+++|+..+++ .+.. +.+|...|..++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA 210 (456)
T ss_pred eeeecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence 5666665 789999999999996 9999999999999997776 3332 578999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEe-cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
|+|||+++++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence 9999999999999999999999 4444444 7889999999999999997 89999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCC--ceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
+|.+.|++++| ++++.+|++++.|+.|++||+.++. +...+..+.. .++++.|+|+++++++++. ++.+.
T Consensus 286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~ 359 (456)
T KOG0266|consen 286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK 359 (456)
T ss_pred ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence 99999999999 5577899999999999999999988 4455554444 5999999999999999986 77899
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||+.++..+..+..+. ...+..++++|..++++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA 438 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence 99999999999999998322245566668899999999999999999999999999988775 45688999999999999
Q ss_pred EEE--CCCcEEEEECC
Q 001396 633 VIA--NENRIKILETP 646 (1086)
Q Consensus 633 ~~~--~dg~i~iw~~~ 646 (1086)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 998 68999999754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=281.22 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=253.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
++..|.+.|.-+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+ +|++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 3788999999999999999999999999999999988777777778999999999999999999 89999999999999
Q ss_pred eCCCCceeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 465 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 465 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
|+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+++..||++......--......|.+++.++||+++++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 999999987774 3467899999955 7789999999999999998765432222223346899999999999999886
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
+..|++++..+.........+ .+|++.+.+.+++++++--.+..+++||++....+..+.++.....+..-+
T Consensus 375 ----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 375 ----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 667999998877665555543 589999999999999999999999999999888888888776555556666
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 624 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 624 ~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
|.- +..++++|+.|+.|+||+..+++++..+.||...|++++++| .+..++++++.||
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDg 505 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDG 505 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCC
Confidence 665 558999999999999999999999999999999999999996 4667899999999
Q ss_pred ccceeeee
Q 001396 703 KSEVEKPL 710 (1086)
Q Consensus 703 ~i~vw~~~ 710 (1086)
+||+|-..
T Consensus 506 tIRIWg~~ 513 (519)
T KOG0293|consen 506 TIRIWGPS 513 (519)
T ss_pred eEEEecCC
Confidence 99999754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=285.20 Aligned_cols=285 Identities=21% Similarity=0.324 Sum_probs=249.8
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.-+..|..|.|.|+|++ |++|+..|.+.+|+..+ ++|+ .++..|..+|.++.||++|.++
T Consensus 94 Kvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred ccccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEE
Confidence 44458999999999998 88999999999999733 1111 2377899999999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
++|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|+.. .++++++||+|+|||....+....+.+|.-.|.+
T Consensus 154 iSgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred EEcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 999999999999987643 22 2444 458999999999888 7999999999999999999988999999999999
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
+.|+|.. .+++++|.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+.+
T Consensus 228 vdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 228 VDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFT 301 (464)
T ss_pred eccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHH
Confidence 9999865 48999999999999999999999999999999999999999999999987 77899999999999999
Q ss_pred EecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
+++|. ..+.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|.+|++|+.|.++++|
T Consensus 302 ~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 302 YRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred hhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeee
Confidence 99998 9999999999765 455689999999999986666666543 334579999999999999999999999999
Q ss_pred ECC
Q 001396 644 ETP 646 (1086)
Q Consensus 644 ~~~ 646 (1086)
...
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 755
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=269.43 Aligned_cols=294 Identities=14% Similarity=0.231 Sum_probs=258.3
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
++.+|.+.|.|+++-|-.+++++|+.|++|+|||+.+|+... ++.||...|..+++|+--. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 378999999999999999999999999999999999997544 7889999999999999887 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|++..+.++.+.||-..|.+++.+|.-| .|++|+.|.++|+||+++...+..+.+|..+|.++.+.|-.-.+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 9999999999999999999999988654 8999999999999999999999999999999999999998889999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|..|++||+..|+...++..|. ..+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 7789999999999999988887 899999999998888888876 589999999999998876644 4888888
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
+.|| ++++|+++|.+.+||.+++..++.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8877 7889999999999999988655544211000 00
Q ss_pred ceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 705 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 705 ~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134568888999999999999999999999744
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=290.85 Aligned_cols=295 Identities=16% Similarity=0.255 Sum_probs=254.0
Q ss_pred CccceeeeeccCCCCceEeeecC-CCceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
+|...++++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 58899999999999999999999 664 899999999999999987 777765 88999999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
..++|+++|..+.+++.|+.|++||+++|+++.. + .-...++|+.|.||+.. .+++|+.|+.|+.||+++|+.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f-~~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---F-HLDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEE---E-ecCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 9999999999999999999999999999987653 2 12346899999999965 78889999999999999999999
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
.+..|-+.|..+.|. ++|.++++.+.|+.+++|+.+....+. ..........++..+|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 999999999999995 477899999999999999998776654 33444557788999999999998765 77898
Q ss_pred EEeCCCC---eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CC
Q 001396 553 EWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG 628 (1086)
Q Consensus 553 iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 628 (1086)
++.+... ...+.|.+|... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+. ..+..+.|+| ..
T Consensus 411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP 487 (503)
T ss_pred EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence 8886532 344567777622 445678999999999999999999999999999999998874 4588999999 45
Q ss_pred CEEEEEECCCcEEEEE
Q 001396 629 TLLAVIANENRIKILE 644 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~ 644 (1086)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6899999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-29 Score=262.12 Aligned_cols=551 Identities=16% Similarity=0.163 Sum_probs=379.7
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC-CccEEEEEECCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDG 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg 402 (1086)
+.-...+|.++|||.+.+. ||.+-.+|.|.||++..+=... ..+.|+ ...|.+++|+ +|
T Consensus 21 ~d~~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~ 80 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EG 80 (691)
T ss_pred EeeeccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cC
Confidence 3344569999999999985 8999999999999998754332 224444 5789999999 55
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE--EeecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~ 480 (1086)
..|.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++...++... .|....+
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred CeEEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 677788899999999999987655 5667788999999999998 78899999988888888777653 4444568
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-----C---CCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
.|.++.|+ +++..+++|+.||.|++||...+....... . ...-|.++.|-.++ .|++|- ..|.|.
T Consensus 156 RvLslsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~ 228 (691)
T KOG2048|consen 156 RVLSLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVT 228 (691)
T ss_pred eEEEEEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEE
Confidence 89999984 467789999999999999999988766221 1 22246788887555 455553 378899
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee--EEEEcCCCCCCCCceEEEecCCCE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
.||...+.+++.+..|. ..|.+++..+++.++++++.|+.|.-+...++.. +.......+...+.+++..++ .
T Consensus 229 FWd~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~ 303 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A 303 (691)
T ss_pred EEcccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence 99999999999998888 9999999999999999999999999988876643 222222233446899999877 8
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
+++|+.|.++.+-........ .|... ...|....... ...+++..--.+..+.+|.+.
T Consensus 304 l~sgG~d~~l~i~~s~~~~~~----~h~~~----~~~p~~~~v~~--------------a~~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSREFKNM----DHRQK----NLFPASDRVSV--------------APENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred EEecceeeEEEEccccccCch----hhhcc----ccccccceeec--------------CccceEEEEeccccccceecc
Confidence 999999999888655432111 11100 00111111100 112223333344566667655
Q ss_pred ecCCc------cccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCc
Q 001396 711 FARPS------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 784 (1086)
Q Consensus 711 ~~~~~------~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 784 (1086)
..... ....+. ......|.+.+.||+|+.++.+.-. ..++|.++.... +++-....
T Consensus 362 S~~~~g~~~~~~Llkl~---~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~-----------vk~~~v~~--- 423 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLF---TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN-----------VKVINVDD--- 423 (691)
T ss_pred CcccccccChhhheeee---cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc-----------eeEEEecc---
Confidence 43211 111111 1245678999999999977776654 567777654321 11111110
Q ss_pred eeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceE--EEEEc--CCCCCeEEEEEcCCCCCEEEEEeC
Q 001396 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT--ILTIM--PPSPTATSLAFNPHDNNVIAIGMD 858 (1086)
Q Consensus 785 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~--~~~~~--~~~~~i~~l~~s~~d~~~lasg~~ 858 (1086)
.+ ........+.|+-|+..++..+ ...+.+++..+... +..+. .....|..++.|| +|++||+.+.
T Consensus 424 -----~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t 495 (691)
T KOG2048|consen 424 -----VP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIST 495 (691)
T ss_pred -----ch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEec
Confidence 00 1334567888998988887776 47788888775443 33332 2446899999999 9999999999
Q ss_pred CCeEEEEEcCCceeEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeec---cCCCccCCCCce
Q 001396 859 DSTILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---PDGVMTLAPSET 934 (1086)
Q Consensus 859 dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~v~ 934 (1086)
+|.|.+|++++++.......-...|+.++|+| +...|+.+..++++.-+|++............ +.........+.
T Consensus 496 ~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~ 575 (691)
T KOG2048|consen 496 RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIP 575 (691)
T ss_pred cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCc
Confidence 99999999998876554434557899999995 66789999999999999995433222111111 111111224688
Q ss_pred EEEEecCCCEEEEE-eCCeEEEEEcC
Q 001396 935 HIQFHKDQTRFLLV-HETHLAIYEAE 959 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-~d~~i~vwd~~ 959 (1086)
.+.|+|.....+.. ..+-+.+.|..
T Consensus 576 gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 576 GISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred eEEeCCCCccEEEEEcCcEEEEEecC
Confidence 89998877766654 34456666654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=248.41 Aligned_cols=293 Identities=16% Similarity=0.235 Sum_probs=237.8
Q ss_pred cccccceEEEEEecC-CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE
Q 001396 725 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 803 (1086)
Q Consensus 725 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~ 803 (1086)
.+|.+++..++++|- |..|++++.|..|++|+..... -|. .......+|...|+.+|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~--------ck~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT--------CKTVLDDGHKRSVRSVA 68 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE--------EEEeccccchheeeeee
Confidence 347889999999999 8889999999999999865310 011 11111125999999999
Q ss_pred eecCCCEEEEEe-CCeEEEEEcc--CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEec
Q 001396 804 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE 877 (1086)
Q Consensus 804 ~s~dg~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 877 (1086)
++|.|++||+++ |.++.||.-. ..+++..+.+|.++|.|++|++ +|.+||+++.|+.|-||.+..+ ++...+.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999 9999999866 4578899999999999999999 9999999999999999999854 5788999
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEE
Q 001396 878 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 956 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vw 956 (1086)
+|+..|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999988732 13667888888876 7999999999999988 688999999
Q ss_pred EcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 957 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 957 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
...+ .+..-|...+..+.|. ...|++++.|+.|+++.-...-.-..+..... ....|+. -+.++.|.|..
T Consensus 223 ~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~--dVNsV~w~p~~ 292 (312)
T KOG0645|consen 223 RLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEV--DVNSVQWNPKV 292 (312)
T ss_pred eecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhccccc--ccceEEEcCCC
Confidence 9652 2344578899999998 45899999999999998775433223321111 2222333 44589999955
Q ss_pred CCEEEEEeCCCcEEEEccC
Q 001396 1037 PTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1037 ~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.+.|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7999999999999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=295.39 Aligned_cols=247 Identities=18% Similarity=0.329 Sum_probs=227.8
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------c--------------------ccceEeccccccEeE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------A--------------------RQQLEIDAHVGNVND 440 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~--------------------~~~~~~~~h~~~v~~ 440 (1086)
-...++|..||+|++.||.|..|..|++|.+...+. + ....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 346799999999999999999999999999984221 0 112347799999999
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
+.|+|+.+ +|+++|.|+++|+|.+.+..++-.++||..||+.+.|+ |.|.+++|+|.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999996 468999999999999999999999999999
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
+|...+.|+.|+|+..++++|+. |.++++||..+|..++.|.||. ++|.+++|+|+|++|++|++||.|.+||
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 99999999999999999999976 8889999999999999999988 9999999999999999999999999999
Q ss_pred cCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.+++++..+..| ...|.++.|+.+|..||+++.|.+|++||+...
T Consensus 606 l~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999888 456999999999999999999999999998754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=270.30 Aligned_cols=277 Identities=21% Similarity=0.308 Sum_probs=236.0
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
..+.|.|+.+..+ .+++|..|.+|+|||.++-.+++. +.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 4568999999653 389999999999999999888765 8999999999999 567999
Q ss_pred EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---eEEeecCCcceE
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY 483 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 483 (1086)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+.. ++++++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 57799999999999853 899999999999999987653 356789999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
.+.| +.+++++++.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9988 4469999999999999999999999999999999977765 6788888876 7889999999999999
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE-------cCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.++||. .-|.++.|. .+.+++|+.||+|++||+..+...... ..-.+...|..+.|. ...+++.+.
T Consensus 395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccC
Confidence 999999 899999996 578999999999999999876533211 111223356667664 567899999
Q ss_pred CCcEEEEECCCCCee
Q 001396 637 ENRIKILETPESNSV 651 (1086)
Q Consensus 637 dg~i~iw~~~~~~~~ 651 (1086)
|.+|.|||..++.+-
T Consensus 468 ddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 468 DDTILIWDFLNGPPS 482 (499)
T ss_pred CCeEEEEEcCCCCcc
Confidence 999999999876443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-31 Score=285.30 Aligned_cols=287 Identities=25% Similarity=0.412 Sum_probs=255.1
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+++.+|.++|++++|+|+++ ++++|+.||.|.+||+.+++.... +.+|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence 45789999999999999998 588999999999999998875543 5678899999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
+++|++++.+|.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999999999999999875544 5678998999999999977 7888888999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
+.++++++. +.++++++.|+.|++||++..+....+..+...+.+++|+|+++.+++++. ++.|++||..+++.
T Consensus 138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence 999999664 568888888999999999988888888888889999999999999998875 66799999999988
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
+..+..+. ..+.++.|+|++.++++++.+|.|++|++.+++....+..+ ...+.+++|+|+++++++++.|+.++
T Consensus 212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 88887766 79999999999888888888999999999999888888754 34689999999999999999999999
Q ss_pred EEE
Q 001396 642 ILE 644 (1086)
Q Consensus 642 iw~ 644 (1086)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=270.43 Aligned_cols=282 Identities=16% Similarity=0.214 Sum_probs=246.7
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
...|..+.|.|+|+.|++|+..|.+.+|+..+-. -...+..|..+|.++.|+++|. +++||+.+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4689999999999999999999999999975422 1123568999999999999999 8999999999999996544
Q ss_pred ceeEEeecC-CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 470 SRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 470 ~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
. ++.+.+| ...|++++|+| +...+++++.||+|+|||....++...+.+|+-.|.++.|+|.-..+++++. |
T Consensus 171 n-Vk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 171 N-VKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred h-hHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 4 4445454 49999999977 4468999999999999999999988888999999999999999999999986 5
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-C
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-N 627 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 627 (1086)
..|.+||.++|.++.++.+|. ..|..+.|++++++|+++|.|..++++|+++.+.+.++..|. ..+.+++|+| .
T Consensus 244 nlVKlWDprSg~cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~ 318 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPLN 318 (464)
T ss_pred ceeEeecCCCcchhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch--hhheeecccccc
Confidence 689999999999999999988 999999999999999999999999999999888888888664 4699999999 6
Q ss_pred CCEEEEEECCCcEEEEECCCCCeeeec-cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 628 GTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 628 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
..+|.+|+.||.|..|.+....++..+ .+|...|++++++ |-|..|++|+.|.++++
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h----------------------PlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH----------------------PLGHILATGSNDRTVRF 376 (464)
T ss_pred ccceeeccCCCceEEEeccccccccCCCcccccceeeeecc----------------------ccceeEeecCCCcceee
Confidence 778999999999999999955555444 5789999999998 55778899999999999
Q ss_pred eeee
Q 001396 707 EKPL 710 (1086)
Q Consensus 707 w~~~ 710 (1086)
|...
T Consensus 377 w~r~ 380 (464)
T KOG0284|consen 377 WTRN 380 (464)
T ss_pred eccC
Confidence 9754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=295.42 Aligned_cols=291 Identities=21% Similarity=0.304 Sum_probs=254.9
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC-
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA- 466 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~- 466 (1086)
.|...|.++.||+||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3478999999999999999999999999999977662 22235679999999999999999 8999999999999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
..+..++++++|...|++++|++ +++++++|+.|++|++||++++++...+..|...|++++|++++++|++++.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--- 308 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--- 308 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence 56689999999999999999966 5589999999999999999999999999999999999999999999999965
Q ss_pred CceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCC-CCCceEE
Q 001396 547 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC 623 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~ 623 (1086)
++.|++||+.++. +...+.++.... .+++++|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 7889999999999 567888877333 7999999999999999999999999999999999888877553 2344555
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCCeeeecccc-ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc--c
Q 001396 624 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A 700 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~ 700 (1086)
.++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++ +...++++++ .
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG 444 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence 6789999999999999999999999999999999 7777777775 5566677776 6
Q ss_pred cCccceeeee
Q 001396 701 ENKSEVEKPL 710 (1086)
Q Consensus 701 d~~i~vw~~~ 710 (1086)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8889999753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=276.43 Aligned_cols=290 Identities=15% Similarity=0.189 Sum_probs=254.4
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecC-CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 385 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
.+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4889999999999999 899999999999999999987 66666 7889999999999999999 799999999999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+||++||+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999986 56678899998875 57999999999999999999999999999999999999999999999998
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe---eEEEEcCCCCCCCC
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN 619 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v 619 (1086)
. +..+++|+.+.+..+....... -....++..+|+++++++-+.|+.|.++.+...- ....+.+|.-...-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 6 6689999999887766655443 2567789999999999999999999999876432 22344445433445
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|.. ...+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e---------------------~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE---------------------PSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC---------------------cceeEecc
Confidence 679999999999999999999999999999999999999999999999753 45689999
Q ss_pred ccCccceee
Q 001396 700 AENKSEVEK 708 (1086)
Q Consensus 700 ~d~~i~vw~ 708 (1086)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9e-31 Score=240.94 Aligned_cols=269 Identities=20% Similarity=0.313 Sum_probs=239.6
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 384 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
.++.+|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|..+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3478899999999999999999999999999999999998887 7889999999999999998 7999999999999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC--ceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
||+++|+.++.|.+|.+.|+.+.|+ ++...+++|+.|..+++||.++. ++++.+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999994 46679999999999999998765 4566677677778777764 5667777
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. |++++.||++.|+....+-+ .+|++++|+++++..++++-|+++++.|-.+|+++....+|.....-..
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 76 78899999999988777766 5699999999999999999999999999999999999998877665667
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccc-eeeeEEccCC
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPIS 670 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~p~~ 670 (1086)
++++....++++|+.||.+.+||+.+...+..+..+... +..+++.|..
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence 888888899999999999999999999999888888777 7888888653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-32 Score=261.93 Aligned_cols=275 Identities=16% Similarity=0.257 Sum_probs=234.9
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
...|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 467999988 67789999999999999999987776 678999999999995 45 8999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+++.++-+|...|..+.|+ ..++++++.|.++++||+.+... ...+.+|...|..+.|+. +++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC---
Confidence 9999999999999999984 24999999999999999987654 336678888999888854 59998875
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
|.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 -DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd- 409 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD- 409 (499)
T ss_pred -CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec-
Confidence 8889999999999999999998 78888776 478999999999999999999999999998754 58899996
Q ss_pred CCCEEEEEECCCcEEEEECCCCC---------eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 627 NGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+.+++|+.||+|++||+..+. ++..+..|.+.|..+.|. ...+++
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIvs 464 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQIIS 464 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEEe
Confidence 6789999999999999998663 334445666677666663 667899
Q ss_pred ccccCccceeeeeecCCcc
Q 001396 698 VEAENKSEVEKPLFARPSE 716 (1086)
Q Consensus 698 ~~~d~~i~vw~~~~~~~~~ 716 (1086)
++.|.+|.+||+....+..
T Consensus 465 ssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred ccCCCeEEEEEcCCCCccc
Confidence 9999999999987554443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=245.10 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=255.4
Q ss_pred eeccCCCCceEeeecC---CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 323 TLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~sp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+-+||+.+|..++||| +| |+|++++.|+.=.+-+-++|.-+.+ +.||.+.|....+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~ 68 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLN 68 (334)
T ss_pred EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecC
Confidence 3489999999999985 77 6899999999999988889988876 88999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 478 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h 478 (1086)
.+..+.|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++|+|++..+ +...+.+|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 9999999999999999999999987763 2 6888999999999999 89999999999999998764 56889999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
.+.|..+.|... .+.+++.+.|++||+||.+++..+..+... .+|+++.++++|++|..+. .+.|..||..+
T Consensus 143 tg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 143 TGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred CCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 999999999653 358888899999999999999998877644 4799999999999998875 34599999999
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
...++.+.... .|.+..++|+...+++|++|..++.||..++..+.... .++..+|.|+.|+|+|...++|+.||
T Consensus 215 f~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 215 FGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCc
Confidence 99998888754 89999999999999999999999999999999988862 23345799999999999999999999
Q ss_pred cEEEEECCCCCee
Q 001396 639 RIKILETPESNSV 651 (1086)
Q Consensus 639 ~i~iw~~~~~~~~ 651 (1086)
+|++|....++..
T Consensus 290 TirlWQt~~~~~~ 302 (334)
T KOG0278|consen 290 TIRLWQTTPGKTY 302 (334)
T ss_pred eEEEEEecCCCch
Confidence 9999998766443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=262.24 Aligned_cols=690 Identities=16% Similarity=0.134 Sum_probs=367.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|....- .-....+.+..-.|-|+.|
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f 136 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF 136 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence 355678999999999999997667899999999999999986543210 0112235556678899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~~~~~~~ 477 (1086)
+|...-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+|||.+ .++.+++..+
T Consensus 137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence 9977767777788999999999987554 6889999999999999999 89999999999999987 4688888888
Q ss_pred CCcce-EEEeecccCCccEEEEEEcC----CeEEEEEcCCCce-eEEecC-CCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 478 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 478 h~~~v-~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~-~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
|.+.- ..+.| -.+-+.|++.+.+ ..|++||.+.... ..++.. ....|.---|.||.++|+.++. |+..
T Consensus 212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~ 286 (1012)
T KOG1445|consen 212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNK 286 (1012)
T ss_pred cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---Ccce
Confidence 87642 12334 3344567766655 4689999876543 222222 2224555678999999988763 5778
Q ss_pred EEEEeCCCCeeeeE--EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE-EEe--
Q 001396 551 LVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN-- 625 (1086)
Q Consensus 551 i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s-- 625 (1086)
++.+.+...++... ++... .......++-|....-+..++ ..+++.+.....+.... + .+. ... .|+
T Consensus 287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y-~--VPR-ksyrdFH~D 358 (1012)
T KOG1445|consen 287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPY-I--VPR-KSYRDFHSD 358 (1012)
T ss_pred EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeeccc-c--cch-hhhhhhhhh
Confidence 88888766543211 11100 011123333343222111111 12233332222111110 0 000 000 111
Q ss_pred --cCCCEEEEEECCCcEEEEECCCCCeeeec------ccccc----ceeee------EEccCCCceeccccCCeeee---
Q 001396 626 --KNGTLLAVIANENRIKILETPESNSVDAA------GVLSD----NLRKL------SVNPISTVTGAGIANGSVSV--- 684 (1086)
Q Consensus 626 --~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~----~v~~~------~~~p~~~~~~~~~~~~~~~~--- 684 (1086)
|+..-...+..-| -|=..+++.+..+ +.|.. .+... +|.+.....+ ..+.+.-
T Consensus 359 LfPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppa---aP~~~~n~~~ 432 (1012)
T KOG1445|consen 359 LFPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPA---APRPMSNNNS 432 (1012)
T ss_pred hCccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCC---CCCccccccc
Confidence 1110000000000 0111111111100 00100 00000 0000000000 0000000
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCcccccc---c-cCCcccccceEEEEEecCCceEE------EeeccceeEE
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL---L-LPSKVKANKISRLTYNNGGQAIF------ALASNGVHLM 754 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~---~-~~~~~~~~~i~~l~~s~~g~~l~------~~~~dg~i~v 754 (1086)
.++.-||-+.--+......+|-.+....+....... . -...+...++..+ ++....+. ...+-.+..+
T Consensus 433 ~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~ 510 (1012)
T KOG1445|consen 433 SSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSV 510 (1012)
T ss_pred cccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccc
Confidence 000011100000000001111111000000000000 0 0000000000000 00000000 0000000000
Q ss_pred e------eccCCccccCcc-----------------cccccCCceecCCCCCceee----ecCCCCCCCCCeeEEEeecC
Q 001396 755 W------RWPRNDLTLSTE-----------------ATTKVPPRLYQPRHGPQFMV----NDTTDSNSQEAVPCFALSKN 807 (1086)
Q Consensus 755 w------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~v~~l~~s~d 807 (1086)
. ..+......-|. ...-+.+.-+.-..|..... ..+......-+-.+=-|..+
T Consensus 511 ~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan 590 (1012)
T KOG1445|consen 511 VGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCAN 590 (1012)
T ss_pred cCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeec
Confidence 0 000000000000 00000011111111110000 00000001111122234556
Q ss_pred CCEEEEE---eCCeEEEEEccC-ceEEEE-Ec--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------eeE
Q 001396 808 DAYLFSA---SGGVISLYIVMT-FKTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVI 873 (1086)
Q Consensus 808 g~~l~~~---~dg~i~iwd~~~-~~~~~~-~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~ 873 (1086)
..++|+- +.|.|.||++.. |+.... +. .....|+.+.|.|.|...||++++||.|++|.+..+ ...
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 6677654 368999999974 332211 11 134578999999999999999999999999999764 345
Q ss_pred EEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCC
Q 001396 874 SKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 951 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~ 951 (1086)
..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.. ....+.+|.. .|..++|||||+.+|+ +.||
T Consensus 671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDG 742 (1012)
T ss_pred eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCc
Confidence 678899999999999994 4789999999999999999854 2334556654 8999999999999999 8999
Q ss_pred eEEEEEcCCccceeccccC-CccCEEEEEEeCCCCEEEEEECCC----cEEEEEcCCCceeeeeccccccCCCCccCccc
Q 001396 952 HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1026 (1086)
Q Consensus 952 ~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1086)
+|+||+..+++....--.+ -..+-..+.|.-||+++++.|.|. .|.+||..+.....-....... .-.
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-------aps 815 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-------APS 815 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-------cCc
Confidence 9999999887754321222 145556788999999999888774 5888887765432111100000 001
Q ss_pred ceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCCC
Q 001396 1027 PHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1062 (1086)
Q Consensus 1027 ~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 1062 (1086)
++.-.++++.+.+|++|-.|..|.+|++..+.+..-
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~l 851 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLL 851 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEecCCCceee
Confidence 122235665677889999999999999998887653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=305.71 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=238.9
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 402 (1086)
+..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+...... . .......+. +...|.+++|+| ++
T Consensus 479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK 545 (793)
T ss_pred ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence 456899999999999998 599999999999999864211000 0 000001122 346899999987 57
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
.+||+++.||+|+|||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 899999999999999999886554 6789999999999997 667 8999999999999999999999888754 67
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCc-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC-
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 559 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~- 559 (1086)
|.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..+
T Consensus 620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~ 693 (793)
T PLN00181 620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI 693 (793)
T ss_pred eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence 88888853 467899999999999999998765 456777888899999997 7888988876 778999999743
Q ss_pred -----eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-----------CCCCCCCceEE
Q 001396 560 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC 623 (1086)
Q Consensus 560 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~ 623 (1086)
..+..+.+|. ..+..++|+|++.+|++|+.|+.|++|+......+..... ..+...|.+++
T Consensus 694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 5677888877 8899999999999999999999999999876654433211 12234589999
Q ss_pred EecCCCEEEEEECCCcEEEEEC
Q 001396 624 FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+|++..|++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=268.20 Aligned_cols=285 Identities=23% Similarity=0.342 Sum_probs=254.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|..+|.+++|+|++++|++++.+|.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876443 5678999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++.+..+..|...+.++.|++. +.++++++.+|.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9999899999999999999999654 568888888999999999988888888888889999999999998888764
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.|++||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+. ..+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence 6679999999999888888766 799999999999999999999999999999988888775443 368999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
|++.++++++.++.+++|+..++.....+..|...+.++.++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888889888886 6788899999999999
Q ss_pred eee
Q 001396 706 VEK 708 (1086)
Q Consensus 706 vw~ 708 (1086)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=233.26 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=243.7
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 400 (1086)
+.+.+|.+.|..|+|+.+|.+ ||+|+.|+++.+|+++..+.+.... ..+|.+.|..++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeCCC
Confidence 456899999999999999997 9999999999999999886554322 678999999999998
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
...++|+++.|.+|++||+..+++.... .. .+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.....+ ...
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~ 148 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF 148 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence 5678999999999999999999876632 22 23334589999999 89999999999999999888776654 445
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.+..++|+. ++.+++.....|.|.|..+...+++..+..|...+.++.|+|+|+++++|+. |..+.+||++.--
T Consensus 149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi 222 (313)
T KOG1407|consen 149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI 222 (313)
T ss_pred eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence 677788863 4457777788899999999999999999999999999999999999999987 7789999999999
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+++.+..+. .+|+.+.|+.+|++|++||+|..|-|=++++|..+..++..+. ...++|+|...+||.+++|
T Consensus 223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 999999888 9999999999999999999999999999999999999987654 6899999999999988776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=221.41 Aligned_cols=310 Identities=17% Similarity=0.207 Sum_probs=241.6
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..++.+|.... .|.+++|+|.|. |.|+|+..++.+|-....-..++.. .+.....+......-+.|.+.|.|.+
T Consensus 23 f~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 23 FEAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred eEEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEE
Confidence 35677777654 999999999998 7999999999998765432211100 00000111111122567899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecC--CCccccceEeccccccEeEEEecCC---CCcEEEEEEe-CCCcEEEEeCCCCce
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR 471 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~v~~s~d---~~~l~l~s~~-~d~~i~iwd~~~~~~ 471 (1086)
|||+|++||+|+.|.+|++.-.+. .+......++.-|.+.|..++|-.+ +.. +|++++ .|..|++-|..+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999976654 3334444568889999999999654 233 566654 578899999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------CCceEEEEEecCCCEEEEEeeC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.+.+.+|.+.|.++- +-++..+++|+.|.+||+||++-..++.++... ...|.++++.|.|++|+++..
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999998874 226679999999999999999988887765432 246899999999999999976
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCCCCCCc
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP 620 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~ 620 (1086)
+....+||++.++.++.|..|. ..|.++.|+|...++++++.|..|++-|++.. -.+.... .+...+.
T Consensus 252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i 323 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAI 323 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceE
Confidence 6678999999999999999988 99999999999999999999999999998742 1222222 2334578
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.+.|+|..-.+++.+.|.++.+|.+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 89999998889999999999999764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=256.42 Aligned_cols=285 Identities=19% Similarity=0.237 Sum_probs=243.1
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+.|. .|.+++|||...+=+|+.+. -.+.||+..+...++. +......|.++.|-.||++
T Consensus 24 ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 24 KEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeE
Confidence 4555 99999999966554555443 6899999888776653 3335578999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
||+|...|.|+|+|+.+...++ .+.+|+.+|..+.|+|+++. .+++|++|+.+++||+.+......+.+|++.|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977644444 57899999999999999887 8999999999999999999887799999999999
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKR 563 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~ 563 (1086)
.+++|- +++.+++||.||+|++||.+.......--.|+.+|.++.+-|.|..+++++ ...+++||+.+|. .+.
T Consensus 159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLT 232 (487)
T ss_pred eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehh
Confidence 999865 557999999999999999999866555567888999999999999999987 3469999999554 444
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.+..|. ..|+|+++..++..|++++-|+.+++||+.+.+.+..+...++ |.+++.+|++..+++|..+|.+.+-
T Consensus 233 ~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p---vLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 233 SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP---VLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccc---eeeEEecCCCceEEEecccceeeee
Confidence 444466 8999999999999999999999999999999999999877644 8999999999999999999988876
Q ss_pred ECC
Q 001396 644 ETP 646 (1086)
Q Consensus 644 ~~~ 646 (1086)
+..
T Consensus 307 r~~ 309 (487)
T KOG0310|consen 307 RRE 309 (487)
T ss_pred hhh
Confidence 443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=258.28 Aligned_cols=297 Identities=16% Similarity=0.233 Sum_probs=258.3
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
+.+|..+...+..|.++|..+.|-++... |++|+.|..|++|++..++.-.. ..|.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 56788999999999999999999999664 89999999999999987773221 1277888999
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+.+.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999976555 6889999999999998877 59999999999999999999988
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
++- ....+..|+.. ...+++|-.|++||+||.++.........++ .|+++..+++|..+.+++. +..+.+
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 34445555553 3478999999999999999999888887776 9999999999999999976 667999
Q ss_pred EeCCCCeeeeEEeccccc-CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 554 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
.|+++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 999999988888754311 2347889999999999999999999999999999999998776656799999999999999
Q ss_pred EEECCCcEEEE
Q 001396 633 VIANENRIKIL 643 (1086)
Q Consensus 633 ~~~~dg~i~iw 643 (1086)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999998
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=296.35 Aligned_cols=322 Identities=15% Similarity=0.179 Sum_probs=248.7
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC----Ccc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA 425 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 425 (1086)
+|.+++|+..+....... ...-+.+|.+.|.+++|+|+|++||+|+.|+.|+||++... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 577888888765443211 11114569999999999999999999999999999998642 111
Q ss_pred c-cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCe
Q 001396 426 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 504 (1086)
Q Consensus 426 ~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 504 (1086)
. ....+ .+...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11122 34567999999886433 7999999999999999999999999999999999999753 5679999999999
Q ss_pred EEEEEcCCCceeEEecCCCCceEEEEEe-cCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEec
Q 001396 505 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|++||+.++.....+..+ ..+.++.|+ ++|.++++++. ++.|++||++++. .+..+.+|. ..|.++.|.
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV- 670 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence 999999988877777644 578899995 57899999876 7789999998765 466677776 899999997
Q ss_pred CCCEEEEEECCCcEEEEEcCCC------eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 583 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 583 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
++.++++++.|++|++||+..+ ..+..+..|. ..+..++|+|++++|++|+.|+.|.+|+............
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6789999999999999999743 4566676553 4578899999999999999999999999775533221110
Q ss_pred c-ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEE
Q 001396 657 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 735 (1086)
Q Consensus 657 ~-~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 735 (1086)
. ...+ .. .....+...|.+++
T Consensus 749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~ 770 (793)
T PLN00181 749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC 770 (793)
T ss_pred ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence 0 0000 00 00012456799999
Q ss_pred EecCCceEEEeeccceeEEeec
Q 001396 736 YNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 736 ~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
|++++..+++++.+|.|++|++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=236.33 Aligned_cols=312 Identities=17% Similarity=0.213 Sum_probs=243.5
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceee-eeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..|..|++++.+.+|||||. |+|+|+.|..|+|.|++..-... ...+..-+.....+... .+-.|.++|+++.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeecc
Confidence 34688999999999999998 79999999999999997321110 00000001111112222 3778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---ec
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EG 477 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~---~~ 477 (1086)
....|++|+.|++|+++|+..-...+....+ ....+|.++.|+|.|. +|+.|....++++||+++-++-..- .+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999765433322222 3566899999999999 8999999999999999998875443 56
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC-C-CCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-P-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
|.+.|+++.++ +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|+.+|+++++.+. |..+++|.
T Consensus 260 ht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWE 333 (430)
T KOG0640|consen 260 HTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWE 333 (430)
T ss_pred cccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeee
Confidence 89999999984 5778999999999999999888888776643 3 347999999999999999876 77899999
Q ss_pred CCCCeeeeEEecccccCC--ceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 556 ESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+.+++++..+.|...... .-+...|+....+++.-. ..+.+.-||.+++.....+.. ++...+..+.-||.+.-++
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCcee
Confidence 999999999987631111 123445777778877754 457899999999887766654 3445789999999999999
Q ss_pred EEECCCcEEEEECC
Q 001396 633 VIANENRIKILETP 646 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~ 646 (1086)
+++.|..+++|-..
T Consensus 413 TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARFWYRR 426 (430)
T ss_pred eecccceeeeeeec
Confidence 99999999999644
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=235.15 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=255.5
Q ss_pred ecCCCccEEEEEECC---CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
..||..+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.+|.+.|++.....+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 679999999999995 89999999999988888888887666 7899999999999988877 789999999999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEE
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
|||.-+|..+++|. |...|.+++| +.|.++|++|+.++.+|+||++..+. ...+..|.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999996 9999999999 55778999999999999999987664 55788999999999999999999987
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||.+++..++++... .+|.++.++++|++| +....+.|.+||..+..+++....+.. |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccc---ccc
Confidence 65 778999999999999998874 589999999998755 445567899999999999998887654 788
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeec-cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
...+|+...+++|+.|..++.||..++..+... ++|.++|.|+.|+ |+|..-++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999998885 8999999999996 78889999999
Q ss_pred cCccceeeeeecCC
Q 001396 701 ENKSEVEKPLFARP 714 (1086)
Q Consensus 701 d~~i~vw~~~~~~~ 714 (1086)
||+|++|.....++
T Consensus 288 DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEEEEecCCCc
Confidence 99999999765443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=240.49 Aligned_cols=283 Identities=19% Similarity=0.365 Sum_probs=235.0
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC---
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--- 401 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--- 401 (1086)
.-|.+.|.++... ++ .|.+|++||.++|||.. |+..+. +.||.++|.+++|.-.
T Consensus 102 ~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~ 158 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSS 158 (423)
T ss_pred ccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCc
Confidence 3578899999999 45 48999999999999975 555544 7899999998888543
Q ss_pred CCEEEEEeCCCEEEEEEecCCCcc-ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-------------
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV------------- 467 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~------------- 467 (1086)
...+++++.|.++++|.++.++.. .......||...|.+++..++|. .+++|+.|.+|+||+.+
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchh
Confidence 346999999999999999887653 22223459999999999999999 89999999999999932
Q ss_pred ------------CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 468 ------------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 468 ------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
++.++-++.||.++|.++.|.+ ...+++++.|.+|+.||+.+++....+.. +....++..+|..
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLS 312 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeeccccc
Confidence 1235677899999999999965 35899999999999999999888776654 3478999999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCe---eeeEEecccccCCceEEEEEecCCCE-EEEEECCCcEEEEEcCCCe-eEEEE
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTI 610 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~ 610 (1086)
++|++++. +..+++||.+++. ....+.+|. +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+
T Consensus 313 ~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 313 KLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred ceeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 99999987 7789999999764 456677877 89999999998654 5679999999999999877 88888
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
..|. ..|.++.|+. +..+++|+.|.+|+++...
T Consensus 386 ~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 386 AGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 8774 4588899875 6699999999999998654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=241.46 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=250.8
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcccc-----ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~-----~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
|....+.|..|||||+||++|+.||.|.+||..+|+..+. ...+--+..+|.|+.||.|.. .+++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 4567788999999999999999999999999999976432 123445788999999999999 899999999999
Q ss_pred EEeCCCCceeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 463 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 463 iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+|.+++|.|++.|. .|...|+++.| +.|+..+++++.|.++|+--+.+++....+.+|..-|+...|++||.+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 89999999999 4577799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEEEEcCC-CCCCCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 619 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 619 (1086)
+. |+.|++|+..+.+++.+|+... .+.+|+++-.-|. ..+++++...++|+|.++. |+.+..+... ......
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 87 7889999999999999998654 3467888877765 4678888899999999984 6677776543 222346
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
.+++.+|.|.++++.+.|+.++.+...++..-..+..|...+-.++-+ |..+.+++-+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----------------------PHqNllAsYs 498 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----------------------PHQNLLASYS 498 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----------------------cccchhhhhc
Confidence 788999999999999999999999999999999888888887777665 6678899999
Q ss_pred ccCccceee
Q 001396 700 AENKSEVEK 708 (1086)
Q Consensus 700 ~d~~i~vw~ 708 (1086)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999995
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=273.91 Aligned_cols=306 Identities=19% Similarity=0.249 Sum_probs=248.1
Q ss_pred CCCCceEeeecCCCceEEEEEe--ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+...|..++.+|||.. +|+|+ .||.++||+...=-.- ...++.. .+-....+..|.+.|.|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3456899999999985 99999 8999999997531100 0011111 11111236789999999999999999
Q ss_pred EEEEeCCCEEEEEEecC---C------------CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 405 LGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
||+|++|+.|.||+... + +..+....+.+|...|.+++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 1 11234456889999999999999999 9999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC------CceEEEEEecCCCEEEEEee
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+.+..+.+|.+.|..+.| ++-|++|++-+.|++|++|+..+-+....+..+- ..+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999999 5577999999999999999977655555444332 25788999999999999877
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-----CC------------EEEEEECCCcEEEEEcCCCee
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
-+.+...+.|.+-.+.+.-..+.||. .++.++.|+|. .+ .+++|+.|++|.||.....++
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 66667889999988888889999999 89999999982 11 456799999999999988887
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.....-.. ..|..++|+|||..|++++.||+|.+...+..
T Consensus 317 l~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 317 LFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 766543222 35899999999999999999999999998854
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=225.04 Aligned_cols=286 Identities=13% Similarity=0.162 Sum_probs=241.4
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
++.||+.+++.+.++.+|.+|.+|+.|.++.||--..|+.+. ++.||++.|+|+...-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998888666 7899999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-----CCeEEEEEcC-------CCceeEEecCCCCceEEEEEe
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 532 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s 532 (1086)
|+++|+++..++ ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 677899999965 4455555543 4679999988 445577788888999999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
|-++.|++|.. ++.|.+||.++|. .+..-+.|. ..|+.+++++|..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999986 7779999999984 444455555 799999999999999999999999999999999999987
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEE--------------EECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKI--------------LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i--------------w~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
... +|++.+++|...+++.|+.....-+ |++-..+.+...++|-++|++++++
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 653 4899999998778877755332222 2222224567788999999999996
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 789999999999999987654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=224.51 Aligned_cols=286 Identities=10% Similarity=0.095 Sum_probs=239.1
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
|.||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|.|++...+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcc
Confidence 689999999999999998 799999999999999999999987 889999999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-----CCCcEEEEeCC-------CCce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGSR 471 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-----~d~~i~iwd~~-------~~~~ 471 (1086)
++++|+.|.++++||+++|+++.. + ....+|..+.|+++|. +++... ..+.|.++|++ ..++
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999987763 2 3456899999999999 344332 34678999987 4556
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
...+..+...++.+.|.+ -+++|++|..||.|..||++++.... .-..|...|+.+.+++|..++++++. |.+
T Consensus 140 ~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTT 213 (327)
T ss_pred eEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Ccc
Confidence 788888999999999965 45699999999999999999976655 55778889999999999999999987 667
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEE--EEcCCC------------eeEEEEcCCCCC
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGGL 616 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~~ 616 (1086)
-.+||..+-+.++++.... +|++.+++|...+++.|+.....-| =+.+.| +.+..+.+ +.
T Consensus 214 akl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--HF 287 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--HF 287 (327)
T ss_pred ceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--cc
Confidence 8999999999999998754 9999999999888888664322222 122222 23344444 45
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
.+|++++|+|+|+..++|+.||.|++...+.
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 6799999999999999999999999986654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=225.16 Aligned_cols=287 Identities=16% Similarity=0.233 Sum_probs=237.1
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
+..-.+.|.++.|+++|.+ +++++.|.+++|||..+|+++++ ...+...|..+.|-....
T Consensus 10 f~~~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN 69 (311)
T ss_pred cccCCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence 3445568999999999995 77788899999999999999876 445667888899987777
Q ss_pred EEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 404 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 404 ~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
.++.++. |.+|+.-++.+.+.++ -+.||...|.+++.+|-+. .++|++.|++|++||++..++...+.....+
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 7777766 7899999999998777 6899999999999999998 8999999999999999998888777655555
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecC---CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+. +| ++.|-++|++...+.|++||++... +-..+.. ...+.+.+.|||||++|+.+.. .+.+++.|.
T Consensus 145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA 216 (311)
T KOG1446|consen 145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA 216 (311)
T ss_pred ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence 53 45 6677788888888899999998752 3333333 3557899999999999999875 678999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
-+|..+.++.++.....--...+|+||++++++|+.||+|.+|+++++..+..+... ....+.++.|+|.-..++++
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa-- 293 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA-- 293 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--
Confidence 999999999988744444467889999999999999999999999999999999875 23568899999976666655
Q ss_pred CCcEEEEECC
Q 001396 637 ENRIKILETP 646 (1086)
Q Consensus 637 dg~i~iw~~~ 646 (1086)
+..+.+|-..
T Consensus 294 ~s~l~fw~p~ 303 (311)
T KOG1446|consen 294 SSNLVFWLPD 303 (311)
T ss_pred CceEEEEecc
Confidence 4578888654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=266.56 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=225.8
Q ss_pred ceeeeec-cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 319 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 319 ~~~~~l~-~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...+.+. .|.+.||++.||+||+| ||+|+.|+.|+||.+...+.... ... +.+..... +.. .+.+..+.
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~-~~~--~~~~~~~~-----~~~-~s~~~p~~ 326 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRV-AEG--DSSCMYFE-----YNA-NSQIEPST 326 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcc-ccc--ccchhhhh-----hhh-ccccCccc
Confidence 3445566 99999999999999995 99999999999999977443211 000 00000000 000 00011111
Q ss_pred ECC-----CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 398 WSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 398 ~sp-----dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
-++ .....-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|.+|++|++....|+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence 111 01111112222222221111111123444788999999999999876 7999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
+.|. |...|+|++|+|.. .+++++|+-||.||||++...+.......+ .-|++++|.|||++.+.|+. +|..+
T Consensus 404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~ 476 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCR 476 (712)
T ss_pred eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEE
Confidence 9996 99999999999985 479999999999999999876655554444 68999999999999999998 77899
Q ss_pred EEeCCCCeeeeEEecccc-----cCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 553 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
+|+...-+....+.-+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence 999988777665543321 12379999999754 358899999999999999999999888765555567789999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 001396 627 NGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
||++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 9999999999999999998644
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=259.80 Aligned_cols=289 Identities=12% Similarity=0.129 Sum_probs=224.4
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCCE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL 404 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 404 (1086)
.|-..|.....++|+.. +++++.+..+..|+...|..+.. .............+.+|.+.|.+++|+| ++.+
T Consensus 18 ~~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred cceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 34457888888999764 67777778888898766643311 1011111111234789999999999999 8999
Q ss_pred EEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 405 LGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
||+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|..
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 99999999999999987532 1234468899999999999998644 799999999999999999999999999999
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc-eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.|.+++|++ ++.+|++++.|++|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++.
T Consensus 170 ~V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 170 QITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ceEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 999999965 6789999999999999999998888888777654 4567899999898887766556889999999875
Q ss_pred e-eeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 560 A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 560 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
. .+.....+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 248 ~~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 248 ASPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred CCceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 4 333333222 24566678999999999887 59999999999998877655432 234678888884
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=264.47 Aligned_cols=284 Identities=17% Similarity=0.284 Sum_probs=249.2
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.|...+.|..|. ++ .+++|+.|.+|++||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 366789999999 55 389999999999999999987753 177999999999999888999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
++|+.|.+++|||+.+|++.. .+.+|...|.++...+. .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999877 78899999999988653 78899999999999999999999999999999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeE
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT 564 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 564 (1086)
..+ +.++++|+.|++|++||+.+++++..+.+|.+.|.++.+.+. ..+++|+. |..|++||+.++ +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 569999999999999999999999999999999999987766 88999887 678999999999 99999
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 644 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 644 (1086)
+.+|. .-+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.++.+++||
T Consensus 409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99988 6665544 45689999999999999999999999999874 22345666654 46899999999999999
Q ss_pred CCCCCeeeec
Q 001396 645 TPESNSVDAA 654 (1086)
Q Consensus 645 ~~~~~~~~~~ 654 (1086)
++++.....+
T Consensus 481 l~~~~~~~~l 490 (537)
T KOG0274|consen 481 LRSGTLIRTL 490 (537)
T ss_pred cccCchhhhh
Confidence 9999777655
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=229.78 Aligned_cols=307 Identities=13% Similarity=0.199 Sum_probs=237.7
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
...+.+.+|++||.++++|+.|..|+|+|++..-.... +.+ +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence 45689999999999999999999999999873311000 000 0
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
..+. +.+..++....-.|...|+.+.|.|....|++++.|++++++|+....... ..+
T Consensus 154 ~~~~--------------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISGD--------------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccCC--------------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 0000 000111111111288899999999999999999999999999987543210 011
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEc---CCCCCeEEEEEcCCCCC
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~ 851 (1086)
++ ....+|.++.|+|.|.+|++|.+ .++++||+++.++..... +|.+.|+++.+++ .++
T Consensus 212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 11 15678999999999999999997 789999999999876643 5888999999999 999
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEec-cccC-CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
+.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|..+++|.+.++.......-....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998886 4654 6899999999999999999999999999996633322211111211
Q ss_pred CCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 930 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
.--+...|+....+++.- ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-++||+.|-.+++|--.
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 123567788888888873 456799999999999998999999999999999999999999999999999643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-26 Score=220.92 Aligned_cols=271 Identities=16% Similarity=0.192 Sum_probs=230.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC--CCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~--d~~i~i 463 (1086)
+..-.+.|.++.|+++|.+|++++.|.+++|||..++++++ ++..+...+..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44467899999999999999999999999999999998777 5667777899999988887 4555554 889999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
-++.+.+.++-|.||...|++++.+|.+ ..+++++.|++|++||++..+++..+.....++ ++|+|.|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence 9999999999999999999999997765 589999999999999999988888777666655 789999999999875
Q ss_pred CCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCC-Cc
Q 001396 544 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~ 620 (1086)
...|.+||++.- .+..++.-..........+.|+|||++++.++..+.+++.|.-+|..+..+..+..... -.
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999853 44555554422347889999999999999999999999999999999988876644322 24
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc-cccceeeeEEccC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI 669 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~p~ 669 (1086)
..+|+||++++++|+.||+|.+|+++++..+...++ +...+.++.|+|.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 788999999999999999999999999999999988 5778888888754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=242.19 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=243.6
Q ss_pred cCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 313 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 313 ~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
+..+|..+--.|.+|+..|.++++.|.|-+ +++|+.|.+|++||......... .|+ .+.......
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~ 216 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQ 216 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccc
Confidence 345678888889999999999999999997 89999999999999976543321 121 123345678
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCc---------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
|.+++||+.|..|++.+....++|+|-...+. ++-+..-+||...++|.+|+|+.+. .++|++.||+++|
T Consensus 217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI 295 (641)
T ss_pred cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence 99999999999999999999999999765433 2223345699999999999999988 7999999999999
Q ss_pred EeCCCCce-eEEee-----cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee---EEecCCCC--ceEEEEEe
Q 001396 464 WDAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYS 532 (1086)
Q Consensus 464 wd~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~--~i~~~~~s 532 (1086)
||+...+. +..++ +..-++++++| ++++..|++|+.||.|.+|+....... ..-..|.. .|++++||
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 99986543 33332 23446788888 558889999999999999997654432 23345554 89999999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEE------CCCcEEEEEcCCCe
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ 605 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~ 605 (1086)
+||++|++-+. |..+++||++.. +++....+.. ...+-..++|+|+.+.|++|+ ..|++.+||..+..
T Consensus 374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999775 778999999865 4455555433 124567889999999999975 45789999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.+..+... ...|..+.|+|.-+.|++|+.||.+++|--.
T Consensus 449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 99988766 3468899999999999999999999997544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=220.65 Aligned_cols=285 Identities=17% Similarity=0.246 Sum_probs=227.5
Q ss_pred ceEeeecC--CCceEEEEEe-----ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-C
Q 001396 331 PMSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 402 (1086)
Q Consensus 331 V~~~~~sp--dg~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 402 (1086)
=.++.||| +++..+|++. ..|++.|-++..++-+.. +.-+| -++.+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCc
Confidence 36789999 4543333332 258899999875544432 22222 3478999999995 5
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
..+++++.||+++|||+... -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.++++.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888899999999995433 3455578899999999999998777 67777999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeCCCC-e
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG-A 560 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~-~ 560 (1086)
...+|+|. ...+++++|.|+++++||++.......+..|...+.++.|+.-. +.+++++. ++.|+.||++.- .
T Consensus 151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence 99999987 45699999999999999999988878899999999999999854 55566654 788999999864 4
Q ss_pred eeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-eEEEEcCCCCCCCCceEEEec-CCCEEEEEECC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 637 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 637 (1086)
++..+.+|. -.|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...| ...+..+.|++ ++.++|+.+.|
T Consensus 226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence 567777777 899999999975 467789999999999998543 44444444 34577888887 67899999999
Q ss_pred CcEEEEEC
Q 001396 638 NRIKILET 645 (1086)
Q Consensus 638 g~i~iw~~ 645 (1086)
+.+.||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=249.59 Aligned_cols=279 Identities=18% Similarity=0.267 Sum_probs=241.4
Q ss_pred ceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
..-++||..+ +||+|.. ..|.+|+..+++.... ..-++..|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4557889655 5777764 6899999999986543 2223789999999999999999999
Q ss_pred CCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eecCCcceEEEeec
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH 488 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~ 488 (1086)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999887666 5667 99999999998 34 799999999999999998877655 88999999999995
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
+|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++ ..|+.|++||..+|..+.....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 5778999999999999999999999999999999999999999 5567777765 4588999999999999888765
Q ss_pred ccccCCceEEEEEecCCCEEEE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
. ..|..+.|++..+.|++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++
T Consensus 387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 3 58999999999888877 4577899999999999999998774 46999999999999999999999999998
Q ss_pred CCC
Q 001396 646 PES 648 (1086)
Q Consensus 646 ~~~ 648 (1086)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=262.54 Aligned_cols=306 Identities=17% Similarity=0.242 Sum_probs=239.4
Q ss_pred cccceEEEEEecCCceEEEee--ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEe
Q 001396 727 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 804 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 804 (1086)
+...|.++..+|||..+++++ .||.++||+...--. ....++..-...+.+ .. .|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~--m~--~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT--MD--DHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee--ec--cccCceeEEEE
Confidence 445689999999999999999 899999998653211 011122211111111 11 38999999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccC------------------ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 805 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 805 s~dg~~l~~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
+|||++||+|+| ..|.||+... ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 7789998762 346778999999999999999 89999999999999999
Q ss_pred EcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 866 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
+..+.+.+.++.+|.+.|..+.|.|-|+||||-+.|++|+||++...... ..+..+..+......+..+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence 99999999999999999999999999999999999999999997763322 2344444434334568899999999999
Q ss_pred EE--Ee---CCeEEEEEcCCccceeccccCCccCEEEEEEeC--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001396 946 LL--VH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 946 ~~--~~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~s~~~Dg~v~vWd~~~ 1003 (1086)
++ +. -..+.|.+-.+-+.-.. +.||.+++..++|+| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 98 32 23588888766655554 668999999999998 11 1 588999999999999977
Q ss_pred CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCC
Q 001396 1004 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1060 (1086)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~ 1060 (1086)
.+.+..+. .... -..+.++|+| ||..|++++.||+|.+..+.+.+..
T Consensus 314 ~RPl~vi~--~lf~-------~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIH--NLFN-------KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhh--hhhc-------CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 77664333 1111 2356899999 7999999999999999999876643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=236.43 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=237.3
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeec----cccceeeeeeeecCCCccEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
.+.+..|.-+|.||+++||+++ ..+++.+++|.=|++.+|+.... +|.- .....+++..- .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 4556788889999999999996 89999999999999999986521 1211 11222333322 4899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999998777 5889999999999987666 68999999999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+|.+.|.++.... -+..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSL 355 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeee
Confidence 9999999987643 3345555669999999999 55666778888889999999654 56777775 778999999
Q ss_pred CCCeeeeEEeccc-c--------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCCCCCCceEE
Q 001396 557 SEGAIKRTYQGLQ-L--------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 557 ~~~~~~~~~~~~~-~--------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~ 623 (1086)
...+++.+....+ . +...|++++..|....+++|+.+|.|++|-+.++ .++..+... ..|++++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence 9998887765322 1 1237999999999999999999999999999887 344455433 3589999
Q ss_pred EecCCCEEEEEE
Q 001396 624 FNKNGTLLAVIA 635 (1086)
Q Consensus 624 ~s~~~~~l~~~~ 635 (1086)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777663
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=238.60 Aligned_cols=282 Identities=15% Similarity=0.200 Sum_probs=232.1
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
..+.|.+++|+|...+=++.+..-.+.+|+..... ...++. .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~----------------------~~k~~s----rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS----------------------VRKTFS----RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh----------------------hhhhHH----hhccceeEEEeec
Confidence 45689999999987766666666667776543221 011000 1466789999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEE
Q 001396 807 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 885 (1086)
Q Consensus 807 dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~ 885 (1086)
||+++|.|++ |.|+|||+++...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999984 999999988877788899999999999999999999999999999999999999887799999999999
Q ss_pred EEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccce
Q 001396 886 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 964 (1086)
Q Consensus 886 l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~ 964 (1086)
.+|+|- +.+++|||.||.|++||+.... ......-.+ .+|..+.|-|.|..+|++..+.++|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 4589999999999999998743 122222222 3699999999999999999999999999976665
Q ss_pred eccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001396 965 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1044 (1086)
Q Consensus 965 ~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 1044 (1086)
......|...|+|+++..|+..|+++|-|+.|+|||+.+.+.+..+.. +...++++.+| |++.++.|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~pvLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PGPVLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------ccceeeEEecC-CCceEEEec
Confidence 554556999999999999999999999999999999999998877761 12356788888 679999999
Q ss_pred CCCcEEEEcc
Q 001396 1045 TNGEVYVIEP 1054 (1086)
Q Consensus 1045 ~dg~v~vw~~ 1054 (1086)
.+|.+.+-+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999887743
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=219.41 Aligned_cols=276 Identities=18% Similarity=0.231 Sum_probs=221.9
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCC-ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
-.+.|.+++|||....+++.||-||+||+|+++.. ..... ....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceE
Confidence 35689999999966668889999999999999873 33321 155699999999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|+.||.+...++.++. -.+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998643 46789999999999887766689999999999999999999998886 55677777
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC--ee
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI 561 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 561 (1086)
.. -..+++.+..++.|.+|++++....... ..-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 54 2348999999999999999775543322 122336889999998888888876 566777766665 44
Q ss_pred eeEEeccccc------CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 562 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 562 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
-.+|+.|... -..|++++|+|.-..|++++.||++.+||-+....+...+.+ ..+|.+++|+.+|.+++-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 4556666521 245788999999999999999999999999887777776654 34699999999999888654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=228.81 Aligned_cols=280 Identities=15% Similarity=0.210 Sum_probs=234.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC-cEEEEEEeCCCcEEEEeC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~l~l~s~~~d~~i~iwd~ 466 (1086)
-|.+.|.++... ++.|++|+.||.++|||.... ... .+.||.++|.+++|.-.+. .-.+++++.|.++++|-+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 488999999888 889999999999999998763 333 5789999999888843332 115999999999999998
Q ss_pred CCCcee----EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-------------------------CCceeE
Q 001396 467 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV 517 (1086)
Q Consensus 467 ~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------------------------~~~~~~ 517 (1086)
+.++.. +.-.||...|.++.. .++|..+++|+.|.+|.+|+.. ...++.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 877543 344599999999987 5577899999999999999832 123455
Q ss_pred EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 518 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 518 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.+.+|..+|.++.|++ ...+++++. |.+|+.||+.++..+..+.+. ..+.++..+|..++|++|+.|..|+
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence 6788899999999987 777888876 788999999999999888874 4899999999999999999999999
Q ss_pred EEEcCCCe---eEEEEcCCCCCCCCceEEEec-CCCEEEEEECCCcEEEEECCCCC-eeeeccccccceeeeEEccCCCc
Q 001396 598 IWDMNKVQ---LLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 598 iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
+||.+++. ...++.+| ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.|+
T Consensus 326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~----- 398 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN----- 398 (423)
T ss_pred ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence 99999764 23445544 55799999999 45678899999999999999886 899999999999999986
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 709 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~ 709 (1086)
++..+++|+.|.+++++..
T Consensus 399 ------------------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 ------------------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ------------------CCceEEeccCcceEEEecc
Confidence 6778999999999999874
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=250.52 Aligned_cols=237 Identities=10% Similarity=0.095 Sum_probs=185.3
Q ss_pred ecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCCCc-c----ccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 386 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. . .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence 7899999999999997 89999999999999999986532 1 122357799999999999999874 568999999
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEE-----EEEecC
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN 534 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d 534 (1086)
+|+|||+.+++.+..+. |...|.+++|++ +|.+|++++.|+.|++||++++.....+..|.+.+.. ..|+++
T Consensus 149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 99999999999888776 667899999955 6789999999999999999999888888888765433 335689
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
+.++++++.++..++.|++||++. ++++..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence 999999887655567899999985 55565544322 12333333345558888899999999999998774 3334333
Q ss_pred CCCCCCceEEEecCC
Q 001396 614 GGLPENPRICFNKNG 628 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~ 628 (1086)
....++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 334567889999864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=212.53 Aligned_cols=254 Identities=16% Similarity=0.234 Sum_probs=214.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+..+ .....+|.+.|-.++|.|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 66899999999999999999999999999999999885443 3357799999999999998776 789999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.++++........+.+. ++| +++|.+++.++.|..|.+.|.++.+....... .-.+..++|+-++.+++...+
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~G-- 167 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNG-- 167 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecC--
Confidence 999999998876555554 455 55788999999999999999988766554332 235667888877776666542
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
.|.|.|.....-+++..++.|. ....++.|+|+|+++++|+.|..+.+||++.--+++.+.... -+|..+.||
T Consensus 168 --lG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS 240 (313)
T KOG1407|consen 168 --LGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS 240 (313)
T ss_pred --CceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence 6789999988999999999988 889999999999999999999999999999988888876553 369999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.||++||+++.|..|-|=++++|..+..+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEe
Confidence 99999999999999999888877555444
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=240.44 Aligned_cols=284 Identities=18% Similarity=0.301 Sum_probs=242.1
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE-EE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV 397 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 397 (1086)
++.+.|.||+..|..+++.+.. .++++|.||++++|+-..++-+... .+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence 5668899999999999998887 4899999999999998776655432 25578888877 88
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 398 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 398 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+-+ |+-+|++|+.|.+|.+|...+...+. .+.+|+..|.+++...++. ++|||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 875 56679999999999999999987665 6889999999999888775 89999999999995 567778899
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+|...|++++..+.. .++|||.|++|++| ..++...++.+|...|+.+++-+++.++ +|+. |+.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklW--k~~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLW--KGGTLLKTFSGHTDCVRGLAVLDDSHFL-SCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeec--cCCchhhhhccchhheeeeEEecCCCeE-eecC----CceEEEEec
Confidence 999999999886543 89999999999999 4577888999999999999998876654 5554 889999998
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
+|+.+..+.+|. .-++++....++..++++++|++++||+.. ++.+.+..+.. .++++.+-++|. +++|+.
T Consensus 208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence 899999999998 899999988888999999999999999976 77777776543 488888888885 778899
Q ss_pred CCcEEEEECCCC
Q 001396 637 ENRIKILETPES 648 (1086)
Q Consensus 637 dg~i~iw~~~~~ 648 (1086)
||.|+||.....
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999987744
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=248.70 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=212.3
Q ss_pred ccccceEEEEEecCCceEEEeeccceeEEeeccCCcc------c------------------cCc-cccc---------c
Q 001396 726 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K 771 (1086)
Q Consensus 726 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~-~~~~---------~ 771 (1086)
.|.+.|.++.||+||++|++++.||.|+||.+-..+. . ... +... .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876211 0 000 0000 0
Q ss_pred cCCceecCCCCCceeeec-CCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCC
Q 001396 772 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 850 (1086)
Q Consensus 772 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 850 (1086)
..-.+....... +...+ ....||...|..+.||.++-+|-+.-|.+|++|++...+++..|. |.+.|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000001100000 00000 012369999999999998755444449999999999999999998 999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 851 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 851 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
+++++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776555544 77999999999999999999999999999987776666666555544444
Q ss_pred CCceEEEEecCCC--EEEEEeCCeEEEEEcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 931 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 931 ~~v~~~~~s~dg~--~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|++++.|..|++|+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5799999987654 7777999999999998888877754334 3334567899999999999999999999985544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=219.27 Aligned_cols=330 Identities=15% Similarity=0.162 Sum_probs=258.2
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..+++.|.||++.||.++...... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 356777899999999999988766 899999999999999999999986 889999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEec-CCCCcEEEEEE--eCCC-cEEEEeCCCCceeE
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITC--GDDK-TIKVWDAVTGSRTY 473 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~d~~~l~l~s~--~~d~-~i~iwd~~~~~~~~ 473 (1086)
|++.+.++++++.|++.+||...-.-.+.....-.+|.+.- .+.-+ .+.. ...+ ..|+ +|+ .++.
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe-E~e~sDe~~~---d~d~~~~sD~~tiR-------vPl~ 266 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE-EEEHSDEHNR---DTDSSEKSDGHTIR-------VPLM 266 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh-hhhccccccc---ccccccccCCceee-------eeee
Confidence 99999999999999999999843221111100112332210 01111 1111 1111 1121 232 3578
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.+|.+.|.+..|.. .|+.+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+. |.+.++
T Consensus 267 ~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr----DtTFRL 340 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR----DTTFRL 340 (481)
T ss_pred eeeccccceEehhhhc--CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc----CceeEe
Confidence 8999999999998854 6779999999999999999999999999999999999999999999999876 778999
Q ss_pred EeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe-eEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 554 WNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 554 wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
||.+.. ..+..|+||. ..|+++.|..+ ..+++|+.|.+|++||+++.. ++.++... .+++.++.+..++.+
T Consensus 341 WDFReaI~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~~iI 413 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGHPII 413 (481)
T ss_pred ccchhhcceeeeecccc---cceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCCceE
Confidence 999843 4467788888 99999999986 468999999999999998754 56677654 347899999999999
Q ss_pred EEEECCCcEEEEECCCCCeee----eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcccee
Q 001396 632 AVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 707 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw 707 (1086)
+.--++..|++||+...+..+ .-++|...|.|++|.... | -..|++++.|..+.-|
T Consensus 414 AiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh-------------------p-~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 414 AIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH-------------------P-ACNLFTCGFDRMVAGW 473 (481)
T ss_pred EeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC-------------------c-ccccccccccceeeee
Confidence 999999999999999765433 346888889999987432 1 2457888899999889
Q ss_pred eeee
Q 001396 708 KPLF 711 (1086)
Q Consensus 708 ~~~~ 711 (1086)
.+..
T Consensus 474 ~in~ 477 (481)
T KOG0300|consen 474 KINT 477 (481)
T ss_pred Eecc
Confidence 8763
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=232.69 Aligned_cols=285 Identities=17% Similarity=0.240 Sum_probs=241.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 66799999999999999999999999999999998876 223336778888999999999999 788899999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+...+...++.||++.|+++.|.-.. ..+++|+.|.+|+.||+....+..+... ...+..++.+ +..++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence 99999999999999999999986443 3499999999999999998766554432 2334444444 445666665
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC--CCCCceEE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 623 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 623 (1086)
+..|+.||.++..+......+ +.|.++..++++..+++++.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 667999999999999888875 4899999999999999999999999999999998888765432 23478899
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCCeeeeccccccc--eeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 624 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
|||++.|+++|+.||.|+||++.+++....+...... |+++.|+ |.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999988887765554 9999997 568889999999
Q ss_pred Cccceee
Q 001396 702 NKSEVEK 708 (1086)
Q Consensus 702 ~~i~vw~ 708 (1086)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9998883
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=246.74 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=211.3
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc----------ccceEeccccccEeEEEecC-CCCcEEEEEEeC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 457 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~ 457 (1086)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3456667777888777788877777777776544322 21224679999999999999 777 8999999
Q ss_pred CCcEEEEeCCCC-------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 458 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 458 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
|++|++||+.++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 35899999999999999999988888888999999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCe-
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 605 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~- 605 (1086)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ...+..+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999986 7789999999999998888876 23345678999888888754 47899999998754
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccc-cccceeeeEEcc
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 668 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~p 668 (1086)
++.....+. ...+....|+++++++++++ .|+.|++||+.++..+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333222 23355667899999999887 599999999998876655433 233455555554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=251.26 Aligned_cols=280 Identities=17% Similarity=0.242 Sum_probs=243.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
.+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 366788899898 67899999999999999999876663 3889999999999987555 89999999999999999
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
+|.+.+.+.+|...|.++.. ...++++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 99999999999999999976 33578899999999999999999999999999999999987 889999987
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCCCCCCCceEEEec
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
++.|.+||+.+++++.++.+|. ..|.++.+.+. .++++|+.|++|++||+.++ +++.++..|... +..+. .
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l~--~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSLL--L 421 (537)
T ss_pred CceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccccc--c
Confidence 6689999999999999999988 99999988776 89999999999999999999 899999877553 43333 3
Q ss_pred CCCEEEEEECCCcEEEEECCCCCeeeeccc-cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 627 NGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
.+++|++++.|++|++||..++..+..+.+ +...|.++.+. ...+++++.+++++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVK 477 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeE
Confidence 578999999999999999999999999998 56666655543 35578899999999
Q ss_pred eeeeeecCCc
Q 001396 706 VEKPLFARPS 715 (1086)
Q Consensus 706 vw~~~~~~~~ 715 (1086)
+||+......
T Consensus 478 l~dl~~~~~~ 487 (537)
T KOG0274|consen 478 LWDLRSGTLI 487 (537)
T ss_pred EEecccCchh
Confidence 9998754433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=231.23 Aligned_cols=291 Identities=14% Similarity=0.252 Sum_probs=220.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|+..|.++++.|.|.+|++|+.|.+|++||+..-.. .+++.. .....|.++.|++.|.++ +..+....+
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~i--Lvvsg~aqa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQI--LVVSGSAQA 238 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeE--EEEecCcce
Confidence 788999999999999999999999999999999975432 232222 234479999999999964 444445679
Q ss_pred EEEeCCCCceeE-------------EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecC-----C
Q 001396 462 KVWDAVTGSRTY-------------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDA-----P 522 (1086)
Q Consensus 462 ~iwd~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~-----~ 522 (1086)
+|+| +.|..+. .-+||...+++.+|+|.. ...+++++.||++|+||+...+... .+.. .
T Consensus 239 kl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 239 KLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999 5554432 236799999999999874 4589999999999999998765433 2221 2
Q ss_pred CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc--CCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
.-+++.++|++||+++|++.. +|.|.+|+..+...--.+.-...| ...|+++.|+++|++|++-+.|+++++||
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~----DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCL----DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred ccCceeeecCCCcchhhhccc----CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 226899999999999998886 778999997544322222221222 24899999999999999999999999999
Q ss_pred cCCCe-eEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 601 MNKVQ-LLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 601 ~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
++..+ ++.....-.....-..++|||+.++|++|+. .|.+.+||..+-..+..+......|..+.|+
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh------ 466 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH------ 466 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec------
Confidence 98653 4444433222234578999999999999864 4789999999888888888777778888887
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceee
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~ 708 (1086)
|.-+.+..++.||+++++-
T Consensus 467 ----------------pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 ----------------PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ----------------chhhheeeecCCCceEEEE
Confidence 4556677778888887753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-23 Score=228.67 Aligned_cols=568 Identities=12% Similarity=0.113 Sum_probs=354.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCc-EEEEEEeCCCcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~-l~l~s~~~d~~i~iw 464 (1086)
+.|-...-..-.||+|+++++.+..+ .|.||...+|++++ .+.+|..++..+.+.|.... .++.+++.||.|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 34444444456799999999888655 69999999999888 68899999999999887763 478899999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeeccc-CCccEEE-EEEcCC------------eEEEEEcCCCcee-EEecCCCCceEEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIF-SISVDG------------KIKAWLYDSLGAR-VDYDAPGLGCTRM 529 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~-s~s~dg------------~i~vwd~~~~~~~-~~~~~~~~~i~~~ 529 (1086)
|...+..++++..+. ++.++.+.+. -+...++ ....|. +++-+.+.+.... ..+......-.++
T Consensus 88 d~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence 999999998886443 3333322110 0000122 111111 1111111111000 0000001113567
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeee-eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--Cee
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL 606 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~ 606 (1086)
.+++.|.+..... +..+.+|+..++... .....+..|...+.+.+++|+++++++|..||.|.+|.--. +..
T Consensus 167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 8888888877765 456889988775511 11112222335689999999999999999999999996443 222
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
......|-+...|.+++|+++|.+|++|+..|.+.+|.+.++... -+.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP------------------------------- 289 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP------------------------------- 289 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc-------------------------------
Confidence 222223344557999999999999999999999999999877411 111
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
. -...|..+.+|||+...+....|+.|.+-....-...
T Consensus 290 -------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--- 327 (792)
T KOG1963|consen 290 -------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--- 327 (792)
T ss_pred -------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---
Confidence 0 2356788899999998888888988888765432110
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecC-CCEEEEEeCCeEEEEEccCceEEEEEc-----CCC---
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS--- 837 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~dg~i~iwd~~~~~~~~~~~-----~~~--- 837 (1086)
.++.-..+.+. .. ......-.+.++++|- +..+.-+..|.|++||+.+.+.+..+. .+.
T Consensus 328 -----~tIsgi~~~~~------~~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~ 395 (792)
T KOG1963|consen 328 -----STISGIKPPTP------ST-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV 395 (792)
T ss_pred -----hhccCccCCCc------cc-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence 01110111100 00 0013445667888884 444444457999999998877665543 122
Q ss_pred ---CCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCceeE-----EEeccccCCeEEEEEeCC-C-CEEEE
Q 001396 838 ---PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEVI-----SKLEGHSKRVTGLVFSDA-L-NILVS 897 (1086)
Q Consensus 838 ---~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~~-----~~l~~h~~~v~~l~~spd-g-~~l~s 897 (1086)
-.+++++.+. .|.+++|+- .|| .+++|-......- .....|...+...+|.+. . ..+++
T Consensus 396 n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt 474 (792)
T KOG1963|consen 396 NIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT 474 (792)
T ss_pred eeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence 2468888888 699999863 333 6788977654322 222358877777666543 3 37999
Q ss_pred EeCCCcEEEEECCCCcee-----eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCc
Q 001396 898 SGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS 972 (1086)
Q Consensus 898 ~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~ 972 (1086)
++.||.++||-+...+.. .+.+.....-+. .++++++||.||..|+++.++.|.+||..+...+........
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~ 551 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN 551 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence 999999999998432211 122222222233 378999999999999999999999999998433222232234
Q ss_pred cCEEEEEEeC----CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCC--------C-CccCcccceEEEECCCCCCE
Q 001396 973 VPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP--------T-TSCLHVYPHAIAAHPLKPTQ 1039 (1086)
Q Consensus 973 ~~v~~l~fs~----dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~p~~~~~ 1039 (1086)
.++..++|.. ++. +.....+.+.+|++-+..+...+........ . ...+...-.-+++.| ..
T Consensus 552 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~ 626 (792)
T KOG1963|consen 552 WPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---EL 626 (792)
T ss_pred cchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cc
Confidence 4555555543 332 2333567899999999988763332222222 0 001111112234444 23
Q ss_pred EE--------EEeCCCcEEEEccCCCC
Q 001396 1040 FA--------VGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1040 l~--------~~~~dg~v~vw~~~~~~ 1058 (1086)
+. ..+.|+.|.+++...++
T Consensus 627 ~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 627 LLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred hhhhhhhhhhcccccceEEEecCCCch
Confidence 33 67788888888876555
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=240.98 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=208.4
Q ss_pred EEEEC-CCCCEEEEEeCCCEEEEEEecCCCcc---ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-
Q 001396 395 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 469 (1086)
Q Consensus 395 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~- 469 (1086)
++..+ |.++||.+|+.||.|++|++...... .....+..|.+.|++++...+|+ .|+|+|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46788999999999999998754431 12446788999999999999999 7999999999999999887
Q ss_pred -ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eE--------Eec-CCCCceEEEEEecCCCE
Q 001396 470 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 537 (1086)
Q Consensus 470 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 537 (1086)
-+..++..|...|.++++. ..+..++++||-|+.|.+||+.++.. .. .+. ++...|++++..+.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 33567999999999999999997733 11 122 55668999999999988
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+++|+. ++.+++||.++++.+..++||. ..|..+..++||.+++++|.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 888887 5569999999999999999998 9999999999999999999999999999999999999988755
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.|+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4899999999999999999999998888764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=238.65 Aligned_cols=352 Identities=18% Similarity=0.222 Sum_probs=262.3
Q ss_pred cCCCCce---EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 326 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 326 ~h~~~V~---~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
.|...|. ++..+..+.+.|.+|+.||.|++|+...-....... -...+..|.+.|..++...+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~ 85 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNG 85 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCC
Confidence 3444555 555554443359999999999999986543321100 011267899999999999999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCCc--eeE------
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTY------ 473 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-s~d~~~l~l~s~~~d~~i~iwd~~~~~--~~~------ 473 (1086)
+.|++++.|-+|++|+...+. -....++..|.+.|.|+++ .++.. ++||||-|+.|.+||+.+|. .+.
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 999999999999999998874 1223367889999999999 66666 89999999999999999883 332
Q ss_pred --Eee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 474 --SFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 474 --~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
.+. |+...|++++.+ ++|..+++|+..+.+++||.++.+.+..+.+|...|..+..++||+.+++++. |++
T Consensus 163 ~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt 236 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT 236 (735)
T ss_pred cccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence 233 788899999884 46679999999999999999999999999999999999999999999999987 889
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
|++||+...+++.++..|. ..|.++..+|+-.++++|+.||.|+.=|+.+......+-.. ..+|..+..+...+-
T Consensus 237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNS 311 (735)
T ss_pred EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCC
Confidence 9999999999999999988 77999999999999999999999999999985333322212 124677777765556
Q ss_pred EEEEECCCcEEEEECCCCCeeeecccc-------ccceeeeEEccCCCceeccccCCeeee-cCCCCCCcccceeccccC
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVL-------SDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~~~~~~~~~~~~-~~~~s~d~~~l~s~~~d~ 702 (1086)
+-+++.|+.|+-|.......+...... ...+.+....|....-+ ..++ ....-.|.+.+++-...|
T Consensus 312 ~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G------g~ai~k~~mL~dkRhVlTkDa~g 385 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG------GAAIKKHAMLNDKRHVLTKDAKG 385 (735)
T ss_pred ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC------chhhhhhhhhcCcceEeeecCCC
Confidence 688889999999987643222111111 01111111111111111 1111 111146788999999999
Q ss_pred ccceeeee
Q 001396 703 KSEVEKPL 710 (1086)
Q Consensus 703 ~i~vw~~~ 710 (1086)
.+.+||+-
T Consensus 386 nv~lwDIl 393 (735)
T KOG0308|consen 386 NVALWDIL 393 (735)
T ss_pred CEEEEEee
Confidence 99999964
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=224.29 Aligned_cols=250 Identities=21% Similarity=0.277 Sum_probs=214.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccce-------------Ee--ccccccEeEEEecCCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL-------------EI--DAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~-------------~~--~~h~~~v~~v~~s~d~~~l 450 (1086)
...|.-+|.+++++||+++..+++.+++|.=|++.+|+..+... .. .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 55799999999999999999999999999999999887431110 11 27888999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
+|++|+.|..|.|||..+.+.++.+++|.+.|.+++|.. ....+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 999999999999999999999999999999999999954 445799999999999999999999999999999999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
...-++.+-+++. |+++++|++. -+....|.++. +.+-|++|-.+ .++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 8888888877766 7889999994 34445677766 88999999765 68999999999999999999988776
Q ss_pred cCCCC----------CCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 611 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 611 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
....+ ...|++++..|...++++|+.+|.|++|.+.++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 43211 126788999999999999999999999998876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=211.06 Aligned_cols=274 Identities=16% Similarity=0.160 Sum_probs=216.6
Q ss_pred cCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 387 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 387 ~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
...++.|.+|+||| ...++++++-|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 555666889999999999987422222 24568999999999999998 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|++||.+...++..+..++ .+.++.. -...++.+..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5667789999999999887777799999999999999999988888777665 3333332 2234455444
Q ss_pred CCceeEEEEeCCCCeeee-EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--eeEEEEcCCCC-------
Q 001396 546 EGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 615 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------- 615 (1086)
++.|.+|+++.+.... ...... +..+++++..+|....+.|+-+|.+.|..++.+ +.-..+..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 6679999997654322 222221 357899999999888899999999999999886 33344444432
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
...|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+.++...
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 3457889999999999999999999999999988898999999999999998554443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=226.61 Aligned_cols=293 Identities=11% Similarity=0.156 Sum_probs=234.2
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
+-+..|.||.++|.|++=+|..-..+|+|+.||.|+|||+.+..+... +..|.+.|..+++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICV 117 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEe
Confidence 445567999999999999998734699999999999999999888766 7789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
.. ..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.--
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smswG 186 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSWG 186 (433)
T ss_pred cc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeecC
Confidence 87 67889999999999998873 222 3322 33455666655566 68888865 999999999999999888
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
...|.++.|+|... ..|++++.|+.|.+||++...++...... ...+.++|+|.+-.++++.. |..++.+|++.
T Consensus 187 ~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~ 260 (433)
T KOG0268|consen 187 ADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMRN 260 (433)
T ss_pred CCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhhh
Confidence 88999999988754 58888899999999999998876644322 24467899996666666654 77899999875
Q ss_pred C-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 559 G-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 559 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
- .++..+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+......... ....|.++.||.|.+++++|++|
T Consensus 261 l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 261 LSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred hcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCC
Confidence 3 4455566665 99999999999999999999999999999877644333221 12458999999999999999999
Q ss_pred CcEEEEECCCCCee
Q 001396 638 NRIKILETPESNSV 651 (1086)
Q Consensus 638 g~i~iw~~~~~~~~ 651 (1086)
+.|++|.....+.+
T Consensus 337 ~nvRlWka~Asekl 350 (433)
T KOG0268|consen 337 GNVRLWKAKASEKL 350 (433)
T ss_pred cceeeeecchhhhc
Confidence 99999987754433
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=210.01 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=203.3
Q ss_pred CCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001396 793 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~ 869 (1086)
..|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 359999999998 689999998 89999999999999999999999999999998 554 889999999999999999
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 949 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 949 (1086)
.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.|++-.|+......+. . .-+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---N------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---C------cceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999987643322222 2 134599999999999999
Q ss_pred CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceE
Q 001396 950 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1029 (1086)
Q Consensus 950 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1086)
.+.|-+|.+.+......... ..++.++.|. ++..|++|+.|+.|.+||.+++.+.+.+. .|...+..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence 99999999998777665443 3566676665 56688999999999999999988887776 2344455454
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1030 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1030 ~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
.--.| ++.+|++++.||.|+|||+...
T Consensus 257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecC-CceEEEEeccCceEEEEEcccc
Confidence 44566 6789999999999999999765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=219.38 Aligned_cols=282 Identities=16% Similarity=0.191 Sum_probs=244.4
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..+.++...|... .+.+|+.|..+.++|..+++.+.. ++||.-.|..+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4788999998854 589999999999999999988875 88999999999999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec--CCcceEEEe
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC 486 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~~ 486 (1086)
+.|..|+||......+.. ....|.++|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5678999999999999999 899999999999999999998877653 234578888
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
|+| ||-.|.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|+++.. ++.|.+||++.-+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 965 7789999999999999999999999999999999999999999999999986 6669999999988888888
Q ss_pred cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEE
Q 001396 567 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 644 (1086)
Q Consensus 567 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 644 (1086)
... ...+.++.|.+.|.+++.++.+=.|++++-.+.+ .+..+..+ ......+.|..+.+++++++.|..++++.
T Consensus 429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEee
Confidence 765 4579999999999999999888777777755544 44444444 33578899999999999999999988875
Q ss_pred C
Q 001396 645 T 645 (1086)
Q Consensus 645 ~ 645 (1086)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=210.96 Aligned_cols=313 Identities=13% Similarity=0.154 Sum_probs=233.6
Q ss_pred eeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccc
Q 001396 651 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 730 (1086)
Q Consensus 651 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 730 (1086)
+..+++|...|++++|+ .||+++++++.|++|++|++..-.......++..- ..+.
T Consensus 79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dh 134 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDH 134 (420)
T ss_pred hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCC
Confidence 34678999999999996 78999999999999999997643222222222111 2346
Q ss_pred eEEEEEecCCceEEEee-ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 731 ISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.+.++|+||-+.++... ....+++|.+...+. |.... ...-||-.. +. .-|.-.+..+-...+++
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence 78899999988776654 457899998765421 22111 111122100 00 12566777788888999
Q ss_pred EEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c-----eeEEEecccc
Q 001396 810 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS 880 (1086)
Q Consensus 810 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~ 880 (1086)
++++++ |..|.+|++. |+.+..+......-+..++|| +|++||+++----|++|.+-- | ..+..++||.
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~ 278 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ 278 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence 999998 6789999998 899888887777778899999 999999999888999998732 2 2456789999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee--eeeeeeccCCCc-cCCCCceEEEEecCCCEEEEEeCCeEEEEE
Q 001396 881 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYE 957 (1086)
Q Consensus 881 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd 957 (1086)
..|..++||++...++|++.||+++|||++-.... ....++...... ...+....+++||.|+.||++....+++|.
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999998742111 112222221110 011234489999999999999999999999
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
.++|+....+...|...|+++.|++||++++|+| |..++|..-..|
T Consensus 359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999988888888999999999999999999996 788888763333
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-24 Score=193.31 Aligned_cols=299 Identities=15% Similarity=0.224 Sum_probs=232.1
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEec------CCCc--cc----cceEeccccccEeEEEecCCCCcEEEEE
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------GGSD--AR----QQLEIDAHVGNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~------~~~~--~~----~~~~~~~h~~~v~~v~~s~d~~~l~l~s 454 (1086)
-.....|.+++|+|.|.+.|+|+...+.+|--.. .+.. .. ....-+.|.+.|.|.+|+|+|. ++++
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat 106 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT 106 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence 3456789999999999999999999998875432 2111 00 0112346899999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCce-----eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 455 CGDDKTIKVWDAVTGSR-----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
|+.|++|++.-.....+ -..|.-|.+.|..++|...+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~------------------------------------- 149 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE------------------------------------- 149 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-------------------------------------
Confidence 99999999875543322 134445666666666632221
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
..|..|++++. ++..|++-|..+|+....+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-..++.+
T Consensus 150 ---s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~ 219 (350)
T KOG0641|consen 150 ---SGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT 219 (350)
T ss_pred ---cCceEEEecCC---CcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee
Confidence 23455666553 58889999999999999999998 777665 445678899999999999999999888887
Q ss_pred EcCC--CC---CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 610 IDAG--GG---LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 610 ~~~~--~~---~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
+... ++ ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|+
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs----------------- 282 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS----------------- 282 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-----------------
Confidence 7532 21 2468899999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
|...++++++.|..|++-|+...-..+....... .|...+-.+.|.|..-.+++.+.|.++.+|-++
T Consensus 283 -----p~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 283 -----PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -----CCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6678999999999999999865433333322222 377888889999999889999999999999653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=222.29 Aligned_cols=284 Identities=14% Similarity=0.224 Sum_probs=234.4
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 509 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 509 (1086)
.+.||.+.|.+++=+|..-. .++||+.||.|+|||+.+..++.+++.|.+.|..+++.. ..+++++.|++|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 699999999999999999999999999999999999954 4799999999999998
Q ss_pred cCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 510 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 510 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.-.. ..|.++.|+|....|+.
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7663 222322 2334556666667778888875 59999999888998888766 78999999998766655
Q ss_pred -EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-CeeeeccccccceeeeEEc
Q 001396 590 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 590 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~ 667 (1086)
++.|+.|.+||++.+.++..+..... .+.++|+|++-.++++..|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 56999999999999999988765533 478999998888999999999999999865 6778888899999888886
Q ss_pred cCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEee
Q 001396 668 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 747 (1086)
Q Consensus 668 p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 747 (1086)
|-|+-+++|+.|.+|++|............. .....|.++.||-|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYht-----kRMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-----KRMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhH-----hhhheeeEEEEeccccEEEecC
Confidence 6688899999999999999774433322211 1345789999999999999999
Q ss_pred ccceeEEeeccC
Q 001396 748 SNGVHLMWRWPR 759 (1086)
Q Consensus 748 ~dg~i~vw~~~~ 759 (1086)
.|+.|++|.-..
T Consensus 335 dd~nvRlWka~A 346 (433)
T KOG0268|consen 335 DDGNVRLWKAKA 346 (433)
T ss_pred CCcceeeeecch
Confidence 999999998654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=217.94 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=242.3
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
..+.++...|....+++|+.|.++.++|..+++.+. .++||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888888899999999999999999987666 6889999999999999999 79999999999999998888
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--CCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.+|.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999866 5679999999999999999999887765553 346899999999999999876 8
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
+.|.+||+.++..+..|.+|. ++|..+.|+.+|-+++++.+|+.|++||++.-+...++...... ++.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 889999999999999999988 99999999999999999999999999999999888888776654 68999999999
Q ss_pred CEEEEEECCCcEEEEECCC--CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 629 TLLAVIANENRIKILETPE--SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
.+|+.++.+=.|++++-.+ -..+..+..|.+..+++.|. ...+++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 9999998776666666443 35556666666666666665 45677888888887766
Q ss_pred ee
Q 001396 707 EK 708 (1086)
Q Consensus 707 w~ 708 (1086)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 54
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=205.62 Aligned_cols=283 Identities=15% Similarity=0.213 Sum_probs=226.4
Q ss_pred EEEEECC--CCCEEEEE------eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 394 NRVVWSP--DGSLLGVA------YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 394 ~~l~~sp--dg~~las~------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.++.||| ++++.++. ...|.+.|-++..++.+.....+ .-.+.+..++|++.... .+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~-~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHEN-QVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcc-eEEEEecCceEEEec
Confidence 4688998 34433322 35788999999766555544333 35678999999998776 688888899999999
Q ss_pred CCC-CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
+.. ..+++.++.|...|.++.|+.. ++..++++|.|++|++|+......+.++.+|...|...+|+| ..+.+++++.
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 643 4678999999999999999876 456777789999999999999999999999999999999999 4667777764
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCe-eEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~ 621 (1086)
++.+++||++.......+..|. ..+.++.|+.-. ..+++|+.|+.|++||++.-+ ++..+.+| .-.|..
T Consensus 169 ----d~~l~lwdvr~~gk~~~i~ah~---~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AVRk 239 (311)
T KOG0277|consen 169 ----DGTLRLWDVRSPGKFMSIEAHN---SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAVRK 239 (311)
T ss_pred ----CceEEEEEecCCCceeEEEecc---ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEEEE
Confidence 8899999998655555577777 899999999754 566779999999999998754 55666554 457999
Q ss_pred EEEecC-CCEEEEEECCCcEEEEECCC-CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 622 ICFNKN-GTLLAVIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 622 v~~s~~-~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
+.|||. ..+|++++.|-+++|||... ...+.....|.+-+..+.+++ -++.++++.+
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~---------------------~~~~~vAs~g 298 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL---------------------FDPGQVASTG 298 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc---------------------ccCceeeecc
Confidence 999994 56899999999999999884 455666677777777777773 3678899999
Q ss_pred ccCccceeee
Q 001396 700 AENKSEVEKP 709 (1086)
Q Consensus 700 ~d~~i~vw~~ 709 (1086)
-|+.+.+|+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=233.64 Aligned_cols=274 Identities=20% Similarity=0.260 Sum_probs=237.3
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.-+.|| ....||+|... .|++|+..+++... + ...+.+.|+++.|+++|. +|+.|..+|.|.|||..+.+.+.
T Consensus 181 nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence 346788 45567776444 59999999987433 2 223488999999999999 89999999999999999999999
Q ss_pred Eeec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-ecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 474 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 474 ~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +..|...|..+.|++|++++++|+. |+.+
T Consensus 254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV 325 (484)
T ss_pred cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence 9999 99999999994 45899999999999999998887665 8889999999999999999999986 7789
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCC-CEEEE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.|||....+++..+..|. ..|.+++|+|-. ..|++ |+.|+.|++||..+++.+..+... ..|..+.|++..
T Consensus 326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY 399 (484)
T ss_pred EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence 999998889999999988 999999999975 45566 458999999999999999888754 348999999988
Q ss_pred CEEEEE--ECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 629 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 629 ~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
+-|+++ ..++.|.||+..+...+..+.+|...|..++++ |||..+++++.|.++++
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF 457 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence 766664 457889999999999999999999999999996 78999999999999999
Q ss_pred eeee
Q 001396 707 EKPL 710 (1086)
Q Consensus 707 w~~~ 710 (1086)
|++-
T Consensus 458 w~~f 461 (484)
T KOG0305|consen 458 WNLF 461 (484)
T ss_pred cccc
Confidence 9965
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=205.53 Aligned_cols=272 Identities=16% Similarity=0.227 Sum_probs=223.4
Q ss_pred EEEEeCCCEEEEEEecCCC---------ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 405 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
|++|+....|.=+++.-.. .+.+...+..|.++|+++|.+ +. +++|||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4556555555555543221 022344677999999999995 56 8999999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++++|.|++.++.+. |..+++||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence 99999999999987655558999999999999999999999999999999999999999999999886 78899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+-+|+.-....-.. ....+.|+|.|.+++.++.+ .|-+|.+.+......+.... .+.++.|- ++..+++|+
T Consensus 156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~---r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPK---RILCATFL-DGSELLVGG 226 (362)
T ss_pred hhcCccceeeccCC----cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccc---cceeeeec-CCceEEEec
Confidence 99988766655433 34559999999998888765 58899999887777665442 24455554 567899999
Q ss_pred CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 636 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
+|+.|.+||..+..+...+.+|...|..+.+-. .|++.+++++++||.|++||++...
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEe--------------------cCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999999999999887432 4788999999999999999987553
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-21 Score=213.28 Aligned_cols=280 Identities=16% Similarity=0.213 Sum_probs=226.2
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
..|+.+-+.++|.|+|+ +|.+++.||.|++|+...-..... .+.-+...|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccc
Confidence 47888999999999999 588888999999999876532211 022266777777764 559
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
|++|+.+++|.+|...+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2445667899999999999 8999999999999999999999999999999999
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+.++| ++.+|++.+.||.|++||++++.....+..- ...+..++|+|+|..++.... ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99955 6679999999999999999988776654332 235778999999766666554 778999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.+++....+.....+ ..+..+.|+|+|+||++++.+|.|.|||.++... |.....|.+++|.|+.+.+-....
T Consensus 218 ~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred CCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 999988888765522 3489999999999999999999999999998222 333456899999999887766655
Q ss_pred CCcEEEE
Q 001396 637 ENRIKIL 643 (1086)
Q Consensus 637 dg~i~iw 643 (1086)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555554
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=203.10 Aligned_cols=270 Identities=20% Similarity=0.274 Sum_probs=216.6
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.+.|+.|.|+|.+.. |++++.||++++||+....+... -.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence 468999999999986 56667999999999988755432 23889999999997 567889
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEee
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 487 (1086)
|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++||.........+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 9999999999999987553 678999999999998777 79999999999999988765555554 3447888865
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC----ee
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI 561 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~~ 561 (1086)
.+..|+.|+.|..+.+||+++......... -.-.+.++++-|++.-.++++. +|.|.+=.++.. ..
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 456899999999999999998776653322 2237899999998887887776 555655444443 33
Q ss_pred eeEEeccccc------CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 562 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 562 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
...|+.|... ..+|++++|+|--..+++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4455555421 247899999999999999999999999999999988888654 23589999999999999987
Q ss_pred C
Q 001396 636 N 636 (1086)
Q Consensus 636 ~ 636 (1086)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=202.75 Aligned_cols=253 Identities=20% Similarity=0.325 Sum_probs=210.3
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK 462 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~ 462 (1086)
+...|++.|..+...--|++||+|+.|++|+|+.++.+.....+.++.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4668999999998888999999999999999999998887777789999999999999976 677 899999999999
Q ss_pred EEeCCCCce--eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc---eeEEecCCCCceEEEEEecC---
Q 001396 463 VWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN--- 534 (1086)
Q Consensus 463 iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d--- 534 (1086)
||.-++|+- .+....|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999887753 4567789999999999999999999999999999999988762 23355677788999999986
Q ss_pred C-----------CEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCC----CEEEEEECCCcEE
Q 001396 535 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK 597 (1086)
Q Consensus 535 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~ 597 (1086)
| +.|++++. |..|.||+...++ ..+++.+|. +.|+.++|.|.- .+|++++.||++.
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 5 56888876 7789999988764 334577777 999999999974 5789999999999
Q ss_pred EEEcCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 598 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 598 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
||..... .-..++. +.-...+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 9987632 1111221 11234588999999999999999999999997553
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=217.54 Aligned_cols=216 Identities=15% Similarity=0.170 Sum_probs=162.0
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCccc---cceEeccccccEeEEEecCCCCcEEEEEEeCCCc
Q 001396 385 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 460 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~ 460 (1086)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-..+ ....+.+..-.|.++.|+|.... +++++ ..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4889999999999999 67789999999999999998543221 11223333447899999998875 45544 4889
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCC-ceEEEEEecCCCEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL 538 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~d~~~l 538 (1086)
++|||+.+++.+..+.+|...|.++.| +.||.+|++.+.|+.|+|||.+.... +.....|++ .-..+.|..+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 999999999999999999999999999 67899999999999999999886543 445555554 34556777776677
Q ss_pred EEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCee
Q 001396 539 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~ 606 (1086)
++.+.+......|++||.+.. ..+.++.-.. ...|.---|.||.+.++- |-.+.++..+.+...++
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 777665555678999998753 3444444332 234555568899877665 44677888888876654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=232.20 Aligned_cols=247 Identities=12% Similarity=0.175 Sum_probs=189.5
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc--------eeEEeecC
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 478 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h 478 (1086)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 55678899999876543 3368899999999999997 56 89999999999999998642 34567899
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
...|.+++|+|.. ..+|++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998753 2356799999999999999988776665 4568999999999999998875 67899999999
Q ss_pred CeeeeEEecccccCCce-----EEEEEecCCCEEEEEECCC----cEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCC
Q 001396 559 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
++.+..+.+|. +.+ ....|++++.++++++.++ .|+|||++. ++++..+..+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999999887 433 2234568999999988764 799999995 5667666555443222333334568
Q ss_pred CEEEEEECCCcEEEEECCCCCeeeecc--ccccceeeeEEccC
Q 001396 629 TLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPI 669 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~p~ 669 (1086)
.++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 8999999999999999987632 2222 13345556666653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=201.01 Aligned_cols=307 Identities=16% Similarity=0.183 Sum_probs=219.7
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE----EecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
..+++|.+.|++++| +.||++|++++.|+.|++|+++...... ....+-+..+.+.|+||.+-++..... .
T Consensus 80 ~~LKgH~~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~---g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR---G 154 (420)
T ss_pred hhhhccCCceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc---C
Confidence 457899999999999 5689999999999999999988744321 122233356889999999987766543 3
Q ss_pred eeEEEEeCCCC---eeeeE------EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 549 SFLVEWNESEG---AIKRT------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 549 ~~i~iwd~~~~---~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
..+++|-+... ..... +.-+..|.-.+..+-...++.+|++++.|..|.+|++. |+.+..+.... ..-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccc
Confidence 36888865422 11111 11122223456666667778999999999999999998 88888887543 335
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
...+.||+|+++++++-.-.|++|+.--+ .||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~-----------------------------------------kdG~fq---- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFT-----------------------------------------KDGTFQ---- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEec-----------------------------------------cCcchh----
Confidence 77899999999999999889999974311 011000
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
...|++. ..+|...|..++|+++..++++.+.||..++||.+..-.... .+++.
T Consensus 267 --ev~rvf~---------------LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q-------Dpk~L-- 320 (420)
T KOG2096|consen 267 --EVKRVFS---------------LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ-------DPKIL-- 320 (420)
T ss_pred --hhhhhhe---------------eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC-------CchHh--
Confidence 1122222 245999999999999999999999999999999865421100 11110
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc-CCCCCeEEEEEcCCCCCEEEEEeC
Q 001396 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD 858 (1086)
Q Consensus 780 ~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~ 858 (1086)
..|. .+.......-..++++|+|+.||.+....++++..++|+....+. .|...|.+++|++ +|+++++++
T Consensus 321 k~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG- 392 (420)
T KOG2096|consen 321 KEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG- 392 (420)
T ss_pred hcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-
Confidence 1111 111112333448999999999999999999999999998877765 4889999999999 999999887
Q ss_pred CCeEEEEE
Q 001396 859 DSTILIYN 866 (1086)
Q Consensus 859 dg~v~iwd 866 (1086)
|..+++..
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 77888875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-22 Score=216.81 Aligned_cols=514 Identities=15% Similarity=0.146 Sum_probs=325.6
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcC
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD 511 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~ 511 (1086)
+-...-....||+|++ +++... +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3333334567999999 444333 668999999999999999999999999999887664 678899999999999999
Q ss_pred CCceeEEecCCCCceEEEEEec---CCCEEEEEe-eC--------CCCceeEEEEeCCCC--eeeeEEecccccCCceEE
Q 001396 512 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCG-TS--------KEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 512 ~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~-~~--------~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~ 577 (1086)
.+....++..... +..+.+.| +-...+..+ .+ .+-.++++-+.+.+. ........+. .-.+
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~~~ 165 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EPKS 165 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc----CCcc
Confidence 9888777665443 22222211 111111111 10 000111111111110 0011111111 1356
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE-c-CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 578 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
+.+++.+.+....- +..+.+|...++...... . ...+...+.+.++||+++++|++..||.|.+|.--.. .
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~ 238 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S 238 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence 77777776655544 456888888775511111 0 1122233789999999999999999999999974321 0
Q ss_pred ccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEE
Q 001396 656 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 735 (1086)
Q Consensus 656 ~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 735 (1086)
..... .++--| |...|.+++
T Consensus 239 ~~~~t-----------------------------------------~t~lHW-------------------H~~~V~~L~ 258 (792)
T KOG1963|consen 239 DDSET-----------------------------------------CTLLHW-------------------HHDEVNSLS 258 (792)
T ss_pred ccccc-----------------------------------------ceEEEe-------------------cccccceeE
Confidence 00000 111122 667899999
Q ss_pred EecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001396 736 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 815 (1086)
Q Consensus 736 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 815 (1086)
|+++|.+|++|+..|.+.+|.+.++.. .. ++ .-.++|..+.+|||+.+.+...
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence 999999999999999999987655421 11 11 1577899999999999887775
Q ss_pred -CCeEEEEEccCceEEEEEcCC-----------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-----
Q 001396 816 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----- 878 (1086)
Q Consensus 816 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~----- 878 (1086)
|+.|.+....+.....++.+. .+-.+.++++| .-+.++-.+..|.|.+||+.+.+.+..+..
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~ 390 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY 390 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence 899999888766655554432 23357788999 677888888999999999998776655531
Q ss_pred ------ccCCeEEEEEeCCCCEEEEEeC--------CC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC
Q 001396 879 ------HSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 879 ------h~~~v~~l~~spdg~~l~s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 942 (1086)
+.-.++.++.+-.|.+++|.-. || .+++|-...........-.....|.. ..+..+.+++..
T Consensus 391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r 468 (792)
T KOG1963|consen 391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR 468 (792)
T ss_pred cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence 2235788888889999998632 33 47889877644332221122222222 123333334433
Q ss_pred C-EEEE-EeCCeEEEEEcCCccceec---------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC-Cceeeee
Q 001396 943 T-RFLL-VHETHLAIYEAEELTCLKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 1010 (1086)
Q Consensus 943 ~-~l~~-~~d~~i~vwd~~~~~~~~~---------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~-~~~~~~~ 1010 (1086)
. ..++ +.||.+++|-....+-+.. .-.-|..++++++||.||..|+ ++.|++|.+||..+ .++.+..
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~ 547 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTE 547 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccc
Confidence 3 5555 6999999999843322211 1112688999999999997666 55788999999999 5555554
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCC
Q 001396 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1061 (1086)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~ 1061 (1086)
....+.... . ...+-.+ ....++....+.+.+|++......|
T Consensus 548 ~~~~~~~~~-----~--~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 548 GSRNWPIAE-----L--LFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cccccchHh-----H--hhhcccc--cccceeeccCceEehHhhhhhheec
Confidence 421111110 0 0111112 2345556677899999999888888
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=226.10 Aligned_cols=278 Identities=15% Similarity=0.209 Sum_probs=232.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeE-EEecCCCCcEEEEEEeCCCcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+.||...|..+++.++ ..+++++.||++++|+-..++-+. ...+.+|.+-|.. +++.+..+. .+++|+.|.+|.+|
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEEEE
Confidence 8899999999998754 488999999999999987765443 2356788887777 888763332 69999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
...+..++..+.+|...|.++... .++ .+++||.|.++++| ..++....+.+|...|.++++-|++ .+++|+.
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~--~~~-~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa- 159 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIG--EDG-TLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPEN-TYVTGSA- 159 (745)
T ss_pred ecCCCCchhhhhccccceeeeecC--CcC-ceEecccccceEEe--cchhhhcccCCcchheeeeeecCCC-cEEeccC-
Confidence 999999999999999999999863 343 49999999999999 5556666799999999999999988 6677765
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
|..|++|.- ++.+++|.+|. +.|+.+++-+++ .+++++.||.|+.|++ +|+.+..+.+| ...++++..
T Consensus 160 ---DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~ 227 (745)
T KOG0301|consen 160 ---DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISM 227 (745)
T ss_pred ---cceeeeccC--Cchhhhhccch---hheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEe
Confidence 778999985 88899999988 999999999874 6899999999999999 77888777655 456899998
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCcc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 704 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i 704 (1086)
..++..+++++.|++++||+.. .+.+.+.-+...++++.+-++ .-+++|++||.|
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N-----------------------gDIvvg~SDG~V 282 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN-----------------------GDIVVGGSDGRV 282 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC-----------------------CCEEEeccCceE
Confidence 8888999999999999999988 677777777777887776532 237789999999
Q ss_pred ceeeee
Q 001396 705 EVEKPL 710 (1086)
Q Consensus 705 ~vw~~~ 710 (1086)
|+|...
T Consensus 283 rVfT~~ 288 (745)
T KOG0301|consen 283 RVFTVD 288 (745)
T ss_pred EEEEec
Confidence 999865
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=200.90 Aligned_cols=319 Identities=11% Similarity=0.147 Sum_probs=239.4
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 614 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|+++.|+ +.+.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~ 203 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL 203 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence 334568888887777789999999999999999999999999999999999997 5677
Q ss_pred cceeccccCccceeeeeecCCccccccccCC----cccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc
Q 001396 694 PEISVEAENKSEVEKPLFARPSECQSLLLPS----KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 769 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 769 (1086)
++++++.|++..+|..... ...|. ..|...- .+.-+....... ++..
T Consensus 204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~hSsEe-E~e~sDe~~~d~--------------------d~~~- 254 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDHSSEE-EEEHSDEHNRDT--------------------DSSE- 254 (481)
T ss_pred eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCCCchh-hhhccccccccc--------------------cccc-
Confidence 8889999999999985421 11111 1111000 000000000000 0000
Q ss_pred cccCCceecCCCCCce--eeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEc
Q 001396 770 TKVPPRLYQPRHGPQF--MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN 846 (1086)
Q Consensus 770 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 846 (1086)
-..|..+ ....++ +|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+
T Consensus 255 ---------~sD~~tiRvPl~~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 255 ---------KSDGHTIRVPLMRLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred ---------ccCCceeeeeeeeee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence 0111111 112233 4999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCC
Q 001396 847 PHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG 925 (1086)
Q Consensus 847 ~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 925 (1086)
| ..+++++.+.|.+.++||+... ..+..|.||.+.|+++.|.-| ..+++++.|.+|+|||+..... .+.....
T Consensus 324 p-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt 397 (481)
T KOG0300|consen 324 P-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT 397 (481)
T ss_pred C-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec
Confidence 9 8999999999999999999854 467889999999999999976 4689999999999999987432 2222222
Q ss_pred CccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCcccee---ccccCCccCEEEEEEeCCC--CEEEEEECCCcEEEE
Q 001396 926 VMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIH 999 (1086)
Q Consensus 926 ~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~s~~~Dg~v~vW 999 (1086)
. .++..++.+..+..+|.- .+..|++||+......+ .-..+|..-|++++|+.+- .-|+++|.|..+.-|
T Consensus 398 d----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 398 D----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred C----CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 2 258889999999999995 45679999997544322 2246899999999999765 458999999999999
Q ss_pred EcCCC
Q 001396 1000 EASNL 1004 (1086)
Q Consensus 1000 d~~~~ 1004 (1086)
++...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98653
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=217.14 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=230.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.|.+-|.++.+|...++ +.+|+. |.|+|||+....-.. + ....-.....+.|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--P------------vsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--P------------VSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--c------------cccccccCcccceeeeEecCCCceE
Confidence 67778999999999986 888877 899999996542111 0 0000012245789999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.+.+.||
T Consensus 481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 9999999999999987542 22223444444677899999999 88999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
.+ +.||..|.+|+-|++||.||++.+....... ....|.++.++|.+.+++.|-. ++.+.+...... ....+
T Consensus 558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp-~kyql 629 (705)
T KOG0639|consen 558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP-EKYQL 629 (705)
T ss_pred Ee--cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecCCc-cceee
Confidence 98 5688999999999999999999877665443 2347899999999999999986 555766664433 23334
Q ss_pred ecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 566 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
..|. ..|.++.|.+.|+++++.+.|+.+..|.+.-|..+...... ..|.++.+|.|.+++++|+.|....+|.+
T Consensus 630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4444 89999999999999999999999999999988877766533 45899999999999999999998888864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-20 Score=203.23 Aligned_cols=277 Identities=13% Similarity=0.171 Sum_probs=232.1
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..|...-+.++|.|+|.+|.+++.||.|++|+.... +... .+..+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 368888999999999999999999999999998876 3333 233377778877764 44 699999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
...+..-..+....-+++.+++ +.+|.+++.||.|-.|++-+.........+.+|.++|.++.|+|++++||+.+.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-- 158 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-- 158 (933)
T ss_pred CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence 9988876666667788999999 557889999999999999999999999999999999999999999999999876
Q ss_pred CCceeEEEEeCCCCeeeeEEeccccc-----CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
+|.|++||++++.+..++.+-... ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus 159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 788999999999888777654311 2346778999999999999999999999999999999887665555588
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
.+.|+|+|++||+++.+|.|.|||.++.. .......|.+++|.|+...+..-...+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeecc
Confidence 99999999999999999999999999721 144556788999998877665433333
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=214.46 Aligned_cols=266 Identities=15% Similarity=0.215 Sum_probs=213.3
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-C
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 402 (1086)
...|.++|+.+.+-|....++|+++..+.|.|||..+-.-.... .....+...+.||+..=..++|++. .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~~~~ 190 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNRQQE 190 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccccccc
Confidence 35788999999999999989999999999999998764332210 0011223348899988888999985 4
Q ss_pred CEEEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC--CCceeEEee
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE 476 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~--~~~~~~~~~ 476 (1086)
-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.+...
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence 5788999999999999976543 5556678899999999999998877 79999999999999999 566678889
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
+|.++|++++|+|.. +..||+||.|++|++||+++... ...+..|...|..+.|+|+...+++.+. .++.+.+||
T Consensus 270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEe
Confidence 999999999999874 67999999999999999998665 5688999999999999997765554432 288899999
Q ss_pred CCCCeee-----------eEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCC
Q 001396 556 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 603 (1086)
Q Consensus 556 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 603 (1086)
+..-... ..+-.|.+|...|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8743221 122334445599999999999887665 78999999999863
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=207.68 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=235.1
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC-EEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG 406 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la 406 (1086)
.++|++|.|+|.-. +|.+++.|++++||.+....-... +...+ -..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS~~l--~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QSIHL--EKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------eeeee--ccCccceeeecCCCceEEE
Confidence 35899999999987 799999999999999865432221 11112 347999999999999 889
Q ss_pred EEeCCCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
+++....++.||+.+.+..+. ..+.++. ..+.....+++++ +|+..|..|.|.+....|++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~-~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKL-KPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccccc-cCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 999999999999999875442 2344554 3577888999999 89999999999999999999999987 67889999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC-ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC------
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------ 558 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------ 558 (1086)
+|+ .+++.|++++.+|.|.+||++...+...+...++ .-+++|.+++|.++|+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 995 6789999999999999999999988887766554 4578899999999999986 77899999653
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEE
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
.+++..+.... ..|+++.|+++.+.|+.+| .+..+++-.+.+......++.. .....|+|++|+|.+.+||+|.
T Consensus 425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 45555555555 7899999999999988877 5678999998887766666533 3345789999999999999999
Q ss_pred CCCcEEEEECC
Q 001396 636 NENRIKILETP 646 (1086)
Q Consensus 636 ~dg~i~iw~~~ 646 (1086)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=193.68 Aligned_cols=254 Identities=16% Similarity=0.214 Sum_probs=205.3
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--C
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 401 (1086)
-.+|.+-|..+...--|++ |||++.|++|+|+.+..+..... ...|.||+++|..++|-. -
T Consensus 7 dt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred hhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccccc
Confidence 3589999999999999996 99999999999999987664211 112899999999999976 8
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-c--eeEEeecC
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH 478 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h 478 (1086)
|.+||+++.||.|.||.-++|+ ..+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ..+....|
T Consensus 70 G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 9999999999999999999884 555557789999999999999988889999999999999987654 2 23445679
Q ss_pred CcceEEEeecccCC-c-----------cEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecCC----CEEEE
Q 001396 479 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS 540 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~-~-----------~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~~ 540 (1086)
.-.|++++|.|..- | +.|++|+.|..|++|+.++..- ...+..|...|+.++|.|.- .+|++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 99999999987522 1 5799999999999999988632 23478899999999999964 46788
Q ss_pred EeeCCCCceeEEEEeCCCC--eee-eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 541 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++. |+.+.||-.+.. ... ..+.... ..+..+.|+..|+.|+.++.|+.|.+|.-.
T Consensus 229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 876 778999976521 111 1122223 679999999999999999999999999754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=212.50 Aligned_cols=289 Identities=11% Similarity=0.058 Sum_probs=212.9
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE-EEEeCCCEEEEEEecC
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~ 421 (1086)
++++++.|+.|.+||+.+++.+.. +.++ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 688999999999999999887654 3334 346789999999987 5667889999999998
Q ss_pred CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc
Q 001396 422 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 501 (1086)
Q Consensus 422 ~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 501 (1086)
++... .+..+.. +..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++++ +++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence 87544 3333333 567899999984 345556789999999999888877753 3346778884 47778888887
Q ss_pred CC-eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----cCCceE
Q 001396 502 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS 576 (1086)
Q Consensus 502 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~ 576 (1086)
++ .+.+||..+......... ......++|+|+++++++++. .++.|++||+.+++.+..+..+.. ......
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789887665443322 234577999999998876542 256799999999988776653210 011235
Q ss_pred EEEEecCCCEEEEE-ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeec
Q 001396 577 VVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.++|+|++++++++ +.++.+.+||..+++....+... ..+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 68899999986654 55678999999998887665432 247899999999999886 45899999999999888877
Q ss_pred cccccceeeeEEc
Q 001396 655 GVLSDNLRKLSVN 667 (1086)
Q Consensus 655 ~~~~~~v~~~~~~ 667 (1086)
+.. ...+.++++
T Consensus 288 ~~~-~~~~~~~~~ 299 (300)
T TIGR03866 288 KVG-RLPWGVVVR 299 (300)
T ss_pred Ecc-cccceeEeC
Confidence 653 333555543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=194.87 Aligned_cols=300 Identities=15% Similarity=0.194 Sum_probs=224.3
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
..|.++..+|.... ..|+.||+.|. +||+|..||.|.|||+.|...-+. +.+|..+|+
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~ 69 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT 69 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence 44666667776432 79999999997 599999999999999988664433 889999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+++||+||+.|++++.|..|.+||+..|.++++. ....+|+.+.|.|-.++..+++-- +..-.+-++..++....
T Consensus 70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~L 144 (405)
T KOG1273|consen 70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVL 144 (405)
T ss_pred EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeec
Confidence 9999999999999999999999999999877643 356789999999988764555443 44455555544322111
Q ss_pred eecCCcceEEE--eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 475 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 475 ~~~h~~~v~~~--~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
-....+..... +-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.|+..|++++..+. |+.|
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 11111111111 11235678899999999999999999999988887766 78999999999999999876 8889
Q ss_pred EEEeCCCC-------ee--eeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 552 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 552 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+.|+++.- ++ .++++..- .+..-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99987621 11 12222111 113446789999999998876 456799999999999999987654 34678
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.|+|-...+++. ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988777777 6799999986643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=206.74 Aligned_cols=291 Identities=15% Similarity=0.204 Sum_probs=230.4
Q ss_pred EEEEecc-CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC-CccEEEEEECCCCCEEEEEe-CCCEEEEEEec
Q 001396 344 LLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 420 (1086)
Q Consensus 344 la~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 420 (1086)
+.+++.| .++.+||+.+|....+ +++. ...-.++..- .+.|++++. ....+.+|.+.
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~-------------------ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~ 69 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQ-------------------YKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEIL 69 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEE-------------------ecCcccccchhhhhh-chhheeeecccCccccccccC
Confidence 4444545 4599999999987754 2221 0111111111 336777764 34579999998
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 500 (1086)
......+.. --.++|.+++-+|+|. +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+|++||
T Consensus 70 k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTgs 142 (476)
T KOG0646|consen 70 KKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITGS 142 (476)
T ss_pred chhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEecC
Confidence 765444222 3456899999999998 7888889999999999999999999999999999999 56889999999
Q ss_pred cCCeEEEEEcC---------CCceeEEecCCCCceEEEEEecC--CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 501 VDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 501 ~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
.||.|.+|++. +..+...+..|.-+|+.+...+. ..++++++. |.++++||+..|.++.++...
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp- 217 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP- 217 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC-
Confidence 99999999763 33456678889999999988765 457788776 889999999999999888764
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----------------eeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
..+.+++.+|.+..+++|+++|.|.+.++..- ..+..+.+|.+...|+|++++-||.+|++
T Consensus 218 ---~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 218 ---SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ---CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 48999999999999999999999999887532 23344555555558999999999999999
Q ss_pred EECCCcEEEEECCCCCeeeeccccccceeeeEEccC
Q 001396 634 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
|+.||.+.|||..+.++++++....++|+.+.+.|.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999999999999998888889999988765
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=189.74 Aligned_cols=320 Identities=13% Similarity=0.187 Sum_probs=234.3
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 403 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 403 (1086)
.-|.+.|+.+.+.+...+++++|+.||.|.+||++....-...-+ +- ...|. .......+|.-.|..+.|-| |.-
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeee--ccccCCccceeeeeeeEEeeecCc
Confidence 467789999999996555699999999999999986542110000 00 00111 11122568999999999999 667
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC-cEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~-~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
.+.+++.|.+++|||..+-+... .| .-.+.|.+-++||-.. .-++++|..|-.|++-|+.+|.+.+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 88899999999999999865433 23 3456788888888653 3367888888899999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.++.|+|..+ -.|++|+.||.|++||++.. .+.+++.|...++..
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCccC
Confidence 9999998754 68899999999999998752 112444444444333
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC----CCCCCCceEEEecCCCEEEEEECCC
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
..++....|.+.++.++|+.++.++++++.|..+++|+..+|+....-.++ .....-..+. +.+...++..-.++
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~ 315 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG 315 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence 333333445589999999999999999999999999999987643322111 0000011122 33444555556678
Q ss_pred cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.+.++++-++..++.+..|-..+.|.++. |+-+...+++.|+.+..|-..
T Consensus 316 ~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 316 SLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 99999999999999999998888888775 667778899999999999754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-21 Score=208.32 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=201.7
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCcEEEEECCCCCeeeeccccccceee
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 663 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 663 (1086)
..+++++.|+.|++||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 4678889999999999999998888875432 5779999999876 456678899999877542221110
Q ss_pred eEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceE
Q 001396 664 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 743 (1086)
Q Consensus 664 ~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 743 (1086)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEE
Q 001396 744 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 821 (1086)
Q Consensus 744 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~i 821 (1086)
....+..++++|+++.++++. ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123456777777665543 578999
Q ss_pred EEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEE-e
Q 001396 822 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 899 (1086)
Q Consensus 822 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~-s 899 (1086)
||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988877776653 33468899999 899999888775 577889998877665542 2346789999999988544 4
Q ss_pred CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccceeccccCCccCEEE
Q 001396 900 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 977 (1086)
Q Consensus 900 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 977 (1086)
.++.|++||+.+++............+.. ......++|+|+|+++++ +.++.+.+||..+++.+.... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999865433211111110100 012456899999998655 456789999999888766433 3457899
Q ss_pred EEEeCCCCEEEEE-ECCCcEEEEEcCCCceeeeec
Q 001396 978 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 978 l~fs~dg~~l~s~-~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
++|+|+|++|+++ +.+|.|.+||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999876 468999999999999998886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=203.94 Aligned_cols=456 Identities=13% Similarity=0.133 Sum_probs=292.7
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 516 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 516 (1086)
.|..++|-|||.+++++. +..+.+||...|..+.++++|.+.|++++| +.||+.+++|+.|+.|.+|.-.-....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence 799999999999744443 447999999999999999999999999999 568899999999999999965433222
Q ss_pred EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcE
Q 001396 517 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 596 (1086)
Q Consensus 517 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 596 (1086)
--.|+..|.|+.|+|-...|++|+-+. .-+|........+ .+. ...+.+++|..||++++.|-.+|+|
T Consensus 89 --kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 89 --KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred --eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 235778999999999999999998532 6678766543322 221 2578999999999999999999999
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEecCC-----CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCC
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 671 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 671 (1086)
.+-+....+....-...+...+|.+++|+|.. ..+++.....++.++.+... .+..-+...-.-.|+.+
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY----- 230 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY----- 230 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence 99875444444433444556789999999953 46777777777877776632 22211111111222333
Q ss_pred ceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccce
Q 001396 672 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 751 (1086)
Q Consensus 672 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 751 (1086)
-++|.+++.|+.|+.+.+|..+....+ .+ ......|..++..|+++.++.|..||+
T Consensus 231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---Tv----g~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---TV----GEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred -----------------ccCCcEEEEccCCCceEEEeecCeEEe---ec----cccceeEEEEEEccCCceEEEEEccCe
Confidence 378999999999999999874421111 11 114567999999999999999999999
Q ss_pred eEEeeccCCcccc---------------------Cc---------------------ccccccCCceecCCCCCceeeec
Q 001396 752 HLMWRWPRNDLTL---------------------ST---------------------EATTKVPPRLYQPRHGPQFMVND 789 (1086)
Q Consensus 752 i~vw~~~~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~~g~~~~~~~ 789 (1086)
+..|++-....+- .+ ..+....+.+|...++. .....
T Consensus 287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh 365 (1081)
T KOG1538|consen 287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH 365 (1081)
T ss_pred eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence 9999876543200 00 01111223334333332 10000
Q ss_pred CCCCC-CCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEE--cCCCCCEEEEEeCCCeEEEEE
Q 001396 790 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF--NPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 790 ~~~~~-~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~--s~~d~~~lasg~~dg~v~iwd 866 (1086)
++-.. -.....|--.---+..++.+.+..+..+|...-+. +... -.+-|+-+.+ .|.+..-|+.|..+|.|.-.=
T Consensus 366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 00000 00000111111124455556666777777653211 1000 0000111111 121556788899898765443
Q ss_pred cCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEE
Q 001396 867 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 946 (1086)
Q Consensus 867 ~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 946 (1086)
+.+.-++... .....|.|+..+...+.||+..+.++..++|+.+++. .++.+ .+.+++|+....-++
T Consensus 444 ~dN~~PiLl~-~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT~~E~Ml 510 (1081)
T KOG1538|consen 444 VDNLFPILLL-KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNTQCEDML 510 (1081)
T ss_pred ecCCchhhee-cccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeeccccceE
Confidence 4443333222 2456799999999999999999999999999999763 22332 477899988766555
Q ss_pred E-EeCCeEEE
Q 001396 947 L-VHETHLAI 955 (1086)
Q Consensus 947 ~-~~d~~i~v 955 (1086)
+ +..|.+.|
T Consensus 511 cfT~~g~L~V 520 (1081)
T KOG1538|consen 511 CFTGGGYLNV 520 (1081)
T ss_pred EEecCCceEE
Confidence 5 55566655
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-22 Score=190.25 Aligned_cols=268 Identities=15% Similarity=0.104 Sum_probs=210.3
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
.+..|+.+.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46899999999999999999999999999999874332 236899999999998765 89999999999999998
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
+.... +..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++.. .|+.|+.|+. +
T Consensus 85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 87654 44699999999987543 489999999999999998755555544444 6666554 5667777665 6
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC----eeEEEEcCCCC-------CC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 617 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 617 (1086)
..+.+||+++.......... .-+..++++++-|++.-.++++-||.|.+=.++.. +....+..|.. ..
T Consensus 155 r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 78999999876543322111 11367899999999888999999999988666554 33334444321 23
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
+|++++|+|--..|++|+.||.|.+||..+.+.+..+......|..++|+.++..++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 689999999988999999999999999999999999988888899999975554443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=201.45 Aligned_cols=290 Identities=14% Similarity=0.231 Sum_probs=225.7
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
..|+++.|+|...++++++.|++++||.++..... .+.++-+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--------~lqS~~l------------------------------ 255 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--------KLQSIHL------------------------------ 255 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--------hheeeee------------------------------
Confidence 46899999999999999999999999988744211 1111111
Q ss_pred eccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCc-eEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 697 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
...+|.+..|.|+|. .+++++....++.||+...+...-
T Consensus 256 ------------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~---------- 295 (514)
T KOG2055|consen 256 ------------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL---------- 295 (514)
T ss_pred ------------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccc----------
Confidence 235688899999999 788888888999998865432110
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEE
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 854 (1086)
.+..|. ....+....+||++++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|.
T Consensus 296 --~~~~g~-----------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 296 --KPPYGV-----------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELL 360 (514)
T ss_pred --cCCCCc-----------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEE
Confidence 000111 234577889999999999988 6999999999999998887 668899999999 888888
Q ss_pred EEeCCCeEEEEEcCCceeEEEeccccC-CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeeeeeeccCCCccCCCC
Q 001396 855 IGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~~h~~-~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 932 (1086)
+.+.+|.|.+||+....++..+....+ .-++++.|++|.+||+|+..|.|.|||.++.-. ...+++....... ..
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~ 437 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TA 437 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---ee
Confidence 888899999999999999888874322 235688889999999999999999999765221 1123344433333 37
Q ss_pred ceEEEEecCCCEEEEE---eCCeEEEEEcCCccceeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 933 ETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~---~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
|+++.|++|+..||.+ ..+.+++--+.+......|.... -+.|++++|||.|.++|.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999999973 56789999999888877765443 6789999999999999999999999999874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=193.03 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=215.7
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 6799999999999999999999999999976444 5789999999999999999 8999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC----ceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
+.+. ...+|+.+.|+|......+++--... -.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987766665544333 34444444322221111111 1223468999999999976 7
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-------eeE--EEEcCCCCCCCC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 619 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 619 (1086)
|.+.++|..+-+++..++-.. ...|..+.++..|++++.-+.|..||.|++..- ++. +.+..--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 889999999999988887644 367899999999999999999999999998631 111 111100011234
Q ss_pred ceEEEecCCCEEEEEEC-CCcEEEEECCCCCeeeeccccc-cceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 620 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 68999999999988765 4679999999999999999887 55666777765433 233
Q ss_pred ccccCccceeeee
Q 001396 698 VEAENKSEVEKPL 710 (1086)
Q Consensus 698 ~~~d~~i~vw~~~ 710 (1086)
. ..|.+.+|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 3 55889999854
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=204.28 Aligned_cols=255 Identities=15% Similarity=0.158 Sum_probs=206.6
Q ss_pred ceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEec
Q 001396 341 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 420 (1086)
Q Consensus 341 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 420 (1086)
.|++++-.....+.+|.+........ ..++ .++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q----------------~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ----------------YIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhh----------------hccc---ccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 45555544556788888866554431 1112 3689999999999999999999999999999
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC---------CCceeEEeecCCcceEEEeecccC
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|++. +-++++.|..|.-+|+++.+.+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 999877 5679999999999999999 89999999999999763 346788999999999999987765
Q ss_pred CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-------------
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------------- 558 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------------- 558 (1086)
-..+|+++|.|.++++||+..+.....+.. ...+.+++.+|.++.++.|+. +|.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 667999999999999999999877666543 447899999999999999986 66777766542
Q ss_pred ---CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 559 ---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 559 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+..+..+.||.. ...|+|++.+-||..|++|+.||.++|||+.+.++++++... ..+|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~~-~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHEN-ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred ccccceeeeeccccC-CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 233555667661 139999999999999999999999999999999999888732 235788888663
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=203.14 Aligned_cols=283 Identities=12% Similarity=0.153 Sum_probs=232.5
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC---eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.|+.-|..+++|...+++++|+ .+.|.+||+... .++..+.... ....|+++.+.|||+.|++|++-.++.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceee
Confidence 4666788899999999999987 778999998743 2333333321 246799999999999999999999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
|||+....+....+.......+++++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.|+.++
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis---------- 560 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---------- 560 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec----------
Confidence 9999877665544444444568899999999999999999999999999999999999999999999986
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
+||..|.+|+-|+++|-||+......+... ....|.++.++|++.+++++-.++.+.|...
T Consensus 561 ------------~dGtklWTGGlDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 561 ------------KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ------------CCCceeecCCCccceeehhhhhhhhhhhhh-------hhhhheecccCCCccceeeecccCcEEEEec
Confidence 789999999999999999987544333322 3467899999999999999999988877553
Q ss_pred cCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCC
Q 001396 758 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP 836 (1086)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 836 (1086)
... ..+...+ |+..|.++.|++-|+++++.+ |+-+-.|.+.-|..+...+ .
T Consensus 622 skp-----------------------~kyqlhl----heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E 673 (705)
T KOG0639|consen 622 SKP-----------------------EKYQLHL----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E 673 (705)
T ss_pred CCc-----------------------cceeecc----cccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-c
Confidence 322 1222222 899999999999999999987 8889999999888877766 6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNA 867 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 867 (1086)
...|.++.+|. |+++|++|+.|+...||.+
T Consensus 674 ~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 67899999999 8999999999998888865
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=197.21 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=228.8
Q ss_pred eeeeeccCCCCceEeeecCCCc-eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+...-|.+.|++++|+|... .++|+|...|+|-+||+.+.+......+ ++..|..+|.++.|
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKF 242 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEe
Confidence 3445567788999999999876 7899999999999999975444433222 27889999999999
Q ss_pred CC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEee
Q 001396 399 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFE 476 (1086)
Q Consensus 399 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~-~~~~~ 476 (1086)
+| +-..+.+.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.+..=|.+.+||.+++.. ...+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence 99 456888999999999999998642 22223333455678888998888 677777777999999998665 56677
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
-|...|++++++|-. ..+|+++|.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+
T Consensus 320 lh~kKI~sv~~NP~~-p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR 394 (498)
T KOG4328|consen 320 LHKKKITSVALNPVC-PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR 394 (498)
T ss_pred hhhcccceeecCCCC-chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence 799999999998874 479999999999999999875443 345567889999999998888888765 77899
Q ss_pred EEeCC----CCeeeeEEecccccCC--ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 553 EWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 553 iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
+||.. .-.+...+.....+.. ......|.|+..++++|-.-..|-|+|-..++.+..+.......-..-..|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 3333333332221112 23456799999999999999999999999999888765443322223467999
Q ss_pred CCC-EEEEEECCCcEEEEECC
Q 001396 627 NGT-LLAVIANENRIKILETP 646 (1086)
Q Consensus 627 ~~~-~l~~~~~dg~i~iw~~~ 646 (1086)
-+. +++-++..|.|+||..+
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 44445557888888654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-20 Score=195.28 Aligned_cols=273 Identities=12% Similarity=0.128 Sum_probs=204.3
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|..++|-|||..|++.++ ..+.|||++.|.++.. +++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 7999999999987555443 6899999999998876 889999999999999999999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
.|..|.+|+-.-...++ ..|.+.|.|+.|+|-.. .|+|++- ...-+|..+.....+ . .....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHh-h-hhheeEEEeee--
Confidence 99999999976543333 26999999999999998 6888874 357789865443321 1 12334555555
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecC---CCCceEEEEEecCCC-----EEEEEeeCCCCceeEEEEeCCCCee
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
..||++++.|-.+|+|.+-+-. +++...+.. .+.+|.+++|+|... .+++... ..++..+.+ +|+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence 7799999999999999987543 344443333 556899999999643 2333322 223444433 2444
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
+..-+... ....|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++... ...|+.++..|+++.++.|+.||+|.
T Consensus 215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence 43333222 45678899999999999999999999974 56666666543 34689999999999999999999999
Q ss_pred EEECCC
Q 001396 642 ILETPE 647 (1086)
Q Consensus 642 iw~~~~ 647 (1086)
.|++..
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 998763
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=203.92 Aligned_cols=323 Identities=12% Similarity=0.168 Sum_probs=248.0
Q ss_pred CccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 311 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 311 ~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.....+|..|-..+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+ .
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d 441 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------D 441 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------c
Confidence 3455678889999999999999999999998 599999999999999999999986442 2
Q ss_pred ccEEEEEECCCCC--EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE----eCCCcEEEE
Q 001396 391 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIKVW 464 (1086)
Q Consensus 391 ~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~----~~d~~i~iw 464 (1086)
+.|.|++|+|.+. .||++-... +.|-+..-|..+.. +.+ .. .|+++ ..|+.+..|
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W 502 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTW 502 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceee
Confidence 5899999999765 455554444 66666555532221 000 00 12221 235677888
Q ss_pred eCCCC----ceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 465 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 465 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
.-... .-++..-.|...|..+.|+. .|.+|++...+ ..|.|.++.....+..+....+.+.++.|+|...+
T Consensus 503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 64421 11344456999999999965 56799987654 56889999888777777778889999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL 616 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 616 (1086)
|++++ ...|++||+...++++.+.... ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|.
T Consensus 581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~-- 650 (733)
T KOG0650|consen 581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-- 650 (733)
T ss_pred EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--
Confidence 99887 5579999999988888877665 78999999999999999999999999999854 5666676664
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECC------CC---Ceeeeccccccc----eeeeEEccCCCceeccccCCeee
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS 683 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~p~~~~~~~~~~~~~~~ 683 (1086)
..+.+|+|++.-.++++|+.||++.|+... .+ .++..+++|... |....|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH---------------- 714 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH---------------- 714 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence 458999999999999999999999998533 11 345667777665 5555665
Q ss_pred ecCCCCCCcccceeccccCcccee
Q 001396 684 VNEDPKEDVKPEISVEAENKSEVE 707 (1086)
Q Consensus 684 ~~~~~s~d~~~l~s~~~d~~i~vw 707 (1086)
|...++++++.||+|++|
T Consensus 715 ------P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 ------PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------CCCceEEecCCCceEEee
Confidence 567789999999999998
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=199.20 Aligned_cols=253 Identities=19% Similarity=0.326 Sum_probs=202.6
Q ss_pred ecCCCccEEEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-------ccceEeccccccEeEEEecCCCCcEEEEEEeC
Q 001396 386 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
...|.+.|..+.+-|.. ..+|+.+..+.|.|||...-... +....+.+|...-..++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 44689999999999965 45666788889999998754322 233368899998888999998776 7999999
Q ss_pred CCcEEEEeCCCCc-------eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC--CCceeEEecCCCCceEE
Q 001396 458 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR 528 (1086)
Q Consensus 458 d~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 528 (1086)
|++|++||+.... +...+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|.+.+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987533 3467889999999999998744 689999999999999999 55666778889999999
Q ss_pred EEEecCCC-EEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCe
Q 001396 529 MAYSANGR-RLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 529 ~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++|+|-+. .||+++. |++|.+||+++- +++.++.+|. ..|..+.|+|... .|++++.|+.+.|||+..-.
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999655 5556654 778999999864 4667778877 9999999999865 55668899999999997422
Q ss_pred eE------------EEEcCCCCCCCCceEEEecCCC-EEEEEECCCcEEEEECCC
Q 001396 606 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 647 (1086)
Q Consensus 606 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 647 (1086)
.. ..+...++...|..+.|+|+.. .+++++.|+.+.||.+..
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22 2244456677799999999765 567788999999999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=182.09 Aligned_cols=304 Identities=14% Similarity=0.175 Sum_probs=219.0
Q ss_pred cccceEEEEEec-CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee
Q 001396 727 KANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 805 (1086)
Q Consensus 727 ~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s 805 (1086)
|.+.|.++.+.+ .|+++++|+.||.+.+||+............. ...|....+ ...+|...|..+.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~~-h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAKQ-HENGHKYAISSAIWY 110 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeecccc-CCccceeeeeeeEEe
Confidence 788999999876 58999999999999999997654211111110 011111111 122588899999988
Q ss_pred c-CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCceeEEEeccccC
Q 001396 806 K-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSK 881 (1086)
Q Consensus 806 ~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d--~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 881 (1086)
| |...+.+++ |.+++|||..+.+....|. -.+.|.+-++||-. ..++|+|..|-.|++.|+.+|.....+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 8 444555555 8999999999999888886 55677777777621 34889999999999999999999999999999
Q ss_pred CeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCc--eee-----eeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCe
Q 001396 882 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWG--IQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 952 (1086)
Q Consensus 882 ~v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~--~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 952 (1086)
.|.++.|||...+ |++|+.||.|++||+.... ... .+..+..+....+.+.+..++|+.||.++++ +.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 9999999998776 7899999999999997631 100 0111122222333468999999999999998 89999
Q ss_pred EEEEEcCCccceecccc--CCc---cCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccc
Q 001396 953 LAIYEAEELTCLKQWFP--ISS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1027 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~--~h~---~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1086)
+++|+..+|+....-+. .|+ +.-.-+. +.+...++---.|+.+.++++-.|..+.++... --..
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h----------~k~i 338 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH----------LKRI 338 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc----------ccee
Confidence 99999998874332111 121 1111123 445555555556789999999999999888721 1234
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1028 HAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1028 ~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
.|.++.| +-+...+|+.|+.|..|-.
T Consensus 339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 339 NCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEEeecC-chhhhhccccCCccccccc
Confidence 5777888 6788999999999999976
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=204.72 Aligned_cols=324 Identities=13% Similarity=0.169 Sum_probs=242.9
Q ss_pred eeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 383 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 383 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
..++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.|++.. ...+.|.|++|+|.+..-+|+.+- ...+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 3458899999999999999999999999999999999999998843 234579999999999864455444 44477
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE----EcCCeEEEEEcCCCc----eeEEecCCCCceEEEEEecC
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d 534 (1086)
|-+..-|..+..-.. ...|+++ ..++.+..|.-.... .+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 776555532211100 0111111 234567778654222 23455667889999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
|.||++...++ +...|.|.++..+.....|.... +.|.++.|+|...++++++. ..|+|||+....++..+...
T Consensus 533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg- 606 (733)
T KOG0650|consen 533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG- 606 (733)
T ss_pred CceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence 99999987644 36789999998777666665555 78999999999999998876 57999999987777666533
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
...+..++.+|.|..|++++.|+.+..+|+.-. ++.+.++-|...++++++++ .-.
T Consensus 607 -~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~----------------------ryP 663 (733)
T KOG0650|consen 607 -SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK----------------------RYP 663 (733)
T ss_pred -CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc----------------------ccc
Confidence 446889999999999999999999999999855 67888999999999999974 345
Q ss_pred cceeccccCccceeeeeecCCccccccccCC---cccccc----eEEEEEecCCceEEEeeccceeEEe
Q 001396 694 PEISVEAENKSEVEKPLFARPSECQSLLLPS---KVKANK----ISRLTYNNGGQAIFALASNGVHLMW 755 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~~~----i~~l~~s~~g~~l~~~~~dg~i~vw 755 (1086)
++++++.|+++.|+.-.........++..|. .+|... |..+.|.|....+++++.||+|++|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6788888899888874433222222222222 234433 8888999999999999999999997
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-23 Score=219.63 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=213.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+- .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44688999999987789999999999999999987654443 5889999999999999988 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 999999999999999999999966 5678999999999999999999999999999999999999999999999875
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
+..+.+||...|+....|..|. ..+.++.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn 247 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN 247 (825)
T ss_pred --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence 6789999999999999999988 89999999999888888999999999999998888777654 4568999999
Q ss_pred cCCCEEEEEECC
Q 001396 626 KNGTLLAVIANE 637 (1086)
Q Consensus 626 ~~~~~l~~~~~d 637 (1086)
|++..+++|...
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 999998887654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=207.92 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=197.0
Q ss_pred EEEEec-CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC-CE
Q 001396 733 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY 810 (1086)
Q Consensus 733 ~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg-~~ 810 (1086)
.+.|.. +.++|++++..|.|.+||+..... .+.+.. +. +|...+.++.|++-. .+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~i 148 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNI 148 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccE
Confidence 344442 456788888899999999875210 000111 11 489999999999865 56
Q ss_pred EEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccccCCeEEEEE
Q 001396 811 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 811 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~v~~l~~ 888 (1086)
|++|+ ||.|++||+...+...++.+....|+.++|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 67777 8999999999999999999988999999999988999999999999999999864 567888999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE----EeCCeEEEEEcCCccce
Q 001396 889 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL 964 (1086)
Q Consensus 889 spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~~d~~i~vwd~~~~~~~ 964 (1086)
+|++.+|||||+|++|+|||+.+.+.....++++. .++..++|-|+..+.++ +.|..|+|||+...-..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999999999999999998776665555554 35899999999887654 36788999999988877
Q ss_pred eccccCCccCEEEEEEeC-CCCEEEEEECCCcEEEEEcCCC
Q 001396 965 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 965 ~~~~~~h~~~v~~l~fs~-dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
...+..|...++.++|-. |-..+.+++.||+|..-.++.+
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777888999999999966 5567899999999876555544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-22 Score=213.29 Aligned_cols=239 Identities=11% Similarity=0.205 Sum_probs=214.6
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.+..|+..|.|+..-..++ ++++|+.|..+.+|.+..-..+.. +.+|+.+|.++.|+++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS 81 (825)
T ss_pred hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence 34467888999999877776 799999999999999866544433 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
..+|++|+.+|+|++||++.++.++ ++.+|...+..+.|+|-+. +.++|+.|+.+++||.+...|.+.+.+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence 9999999999999999999988777 6889999999999999999 7899999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
|..+.| .++|.++++++.|.++++||+..++....|..|...+.++.|+|..-+++.|+. ++.+++||+++.+.
T Consensus 157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV 230 (825)
T ss_pred eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence 999999 558899999999999999999999999999999999999999999999998886 77899999999888
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
+....... ..|.+..|+|++..+++|....
T Consensus 231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence 87777665 8899999999999888876543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=183.96 Aligned_cols=309 Identities=15% Similarity=0.169 Sum_probs=220.5
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
.++.|+ +|..+.|.+++...+|+|+.|..|+||.++.+..-... ....-...|..|...|+++.|+|+|
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 345665 99999999988746999999999999999876543210 0011123488999999999999999
Q ss_pred CEEEEEeCCCEEEEEEec--------C-----CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 403 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.+||+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|+++++||+..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999887 3 122223446778999999999999999 8999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec----------C---------CC----Cce
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD----------A---------PG----LGC 526 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------~---------~~----~~i 526 (1086)
..+..+..|...|..++|.| -++++++-+.|...+.+.+.......... . |. .-.
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999955 45788888888876666654433222110 0 00 123
Q ss_pred EEEEEecCCCEEEEEeeCCCC-----ceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecC-----------------
Q 001396 527 TRMAYSANGRRLFSCGTSKEG-----ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------------- 583 (1086)
Q Consensus 527 ~~~~~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------------- 583 (1086)
..++|+|||.++++....-+. .+..++++-.. .++...+.+.. .....+.|+|-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence 568899999999875431111 22345554331 22233333333 44555555541
Q ss_pred CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe
Q 001396 584 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 650 (1086)
Q Consensus 584 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 650 (1086)
-+.+++......|++||.++-.++.....- +...++.++|++||..+++.+.||-..+...+..+.
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 123333344567999999998887766432 234689999999999999999999988877765533
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=196.99 Aligned_cols=293 Identities=18% Similarity=0.212 Sum_probs=209.6
Q ss_pred eeec--CCCceEEEEEeccCcEEEEecCCCcee-eeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 334 MDFH--PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 334 ~~~s--pdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
+.|+ |+.+.+||.+..||.|.++|...-... ....++ ....|.+.|..++|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEccC
Confidence 4454 344568999999999999998664322 111111 14579999999999997788999999
Q ss_pred CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--------------------
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------------------- 470 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-------------------- 470 (1086)
|.++++||++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||+.-..
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998876643 46799999999999999887 89999999999999985221
Q ss_pred e-------eEEeecCCcceEE-EeecccCCccEEEEEEc-CCeEEEEEcCCCceeEE--------ecCC---CCceEEEE
Q 001396 471 R-------TYSFEGHGAPVYS-LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMA 530 (1086)
Q Consensus 471 ~-------~~~~~~h~~~v~~-~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~ 530 (1086)
. +.....+...|.+ +......|...|++++. |+.|+|||++....... +..+ ...+.++.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 0 1112234444443 11111345668999887 99999999987654332 2222 23577888
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 608 (1086)
....|.+|++... |+.|+.|++.+- .++..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-.
T Consensus 279 lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 279 LDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred ecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888888877665 778999998753 3445555544211222 23478999999999999999999998765433
Q ss_pred EEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEEECCCC
Q 001396 609 TIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.+. .++...|.+++|.|. -.-++++++|..+++|++..+
T Consensus 354 ~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 ALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 222 133456899999883 334666799999999999655
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=176.44 Aligned_cols=293 Identities=15% Similarity=0.263 Sum_probs=213.9
Q ss_pred eccCCCCceEeeecC----CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 324 LIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 324 l~~h~~~V~~~~~sp----dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+|+.+|..++|.+ +...++|+.+. ..+.||......-+. .++...-..|...-..++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWS 98 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEE
Confidence 458888999999984 33335565554 678888876543221 12222234588888999998
Q ss_pred CC----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 400 PD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 400 pd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
-| ..+||+|+.-|.|+|.|+.++++.+ .+.+|...|+.+.|.|+..+ +++++|.|.+|++||+++..++..|
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEe
Confidence 65 4479999999999999999998776 57899999999999999877 7999999999999999999999887
Q ss_pred ---ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE------Ee----------------------cCCCC
Q 001396 476 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAPGL 524 (1086)
Q Consensus 476 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~----------------------~~~~~ 524 (1086)
.+|.+.|.++.|+. +|.++++++.|..|++|++...+... .+ ..|..
T Consensus 175 GG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn 252 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN 252 (385)
T ss_pred cccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence 56999999999955 66799999999999999997432111 00 11222
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeC-CCCee-------------eeEEecccccCCceEEE--EEecCCCEEE
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQIL 588 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~~--~~~~~~~~l~ 588 (1086)
.|.|+.|- |+++++-+. ++.|..|.. +-++. +..+.-. ...|.-+ +|.|-++.|+
T Consensus 253 yVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 253 YVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred hHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHHHh
Confidence 22233222 456666554 567999987 22211 1222222 2445444 4566688999
Q ss_pred EEECCCcEEEEEcCCCeeE--EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 589 AAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 589 ~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.|...|.|++||++..++. .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999976652 344444444678999999999999999999999999854
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=172.98 Aligned_cols=268 Identities=13% Similarity=0.188 Sum_probs=195.7
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 402 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 402 (1086)
.+|.+-|.|+.|.+-|++ +|+++.|++|+|||.....-....+ .....|.+.|..+.|-+ -|
T Consensus 10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence 489999999999999998 8999999999999975544332211 11557999999999976 59
Q ss_pred CEEEEEeCCCEEEEEEecCC------CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc------
Q 001396 403 SLLGVAYSKHIVQLYAYHGG------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------ 470 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~------ 470 (1086)
+.+|+++.|+++.||.-... ..-....++..-...|+++.|.|.-..+.+++++.||.+|||+.-..-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999986311 112223355667789999999998877799999999999999865432
Q ss_pred eeEEee-------cCCcceEEEeecccCCc-cEEEEEEcC-----CeEEEEEcCCCce----eEEecCCCCceEEEEEec
Q 001396 471 RTYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 471 ~~~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~s~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~ 533 (1086)
..+.++ .+..+..|+.|+++.-. ++|+.|+.+ +.+.||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 223333 35667788888765433 456666655 4889998766553 235678888999999999
Q ss_pred CC----CEEEEEeeCCCCceeEEEEeCCCCe-----------------eeeEEecccccCCceEEEEEecCCCEEEEEEC
Q 001396 534 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 534 d~----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
+- ..|++++. +| |+||.+.... .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus 234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 53 35666654 55 9999887311 12333334445599999999999999999999
Q ss_pred CCcEEEEEcCC---CeeEEEEcCC
Q 001396 593 DHVIKIWDMNK---VQLLTTIDAG 613 (1086)
Q Consensus 593 dg~i~iwd~~~---~~~~~~~~~~ 613 (1086)
||.|++|...- .++...+...
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred CceeeehhhhhhhhheeeeEEecc
Confidence 99999997653 2344444443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=172.64 Aligned_cols=256 Identities=13% Similarity=0.179 Sum_probs=190.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC-ccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~ 462 (1086)
-.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+- |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 56899999999999999999999999999999964432 34444567899999999999654 56 899999999999
Q ss_pred EEeCCC------C---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE------Eec-------
Q 001396 463 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 520 (1086)
Q Consensus 463 iwd~~~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~------- 520 (1086)
||.-.. | ....++......|+.++|.|..-|-.+++++.||++|||+....-... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 1 123566677889999999999999999999999999999765433222 111
Q ss_pred CCCCceEEEEEecC---CCEEEEEeeCC-CCceeEEEEeCCCC--e--eeeEEecccccCCceEEEEEecCC----CEEE
Q 001396 521 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL 588 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d---~~~l~~~~~~~-~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~ 588 (1086)
.+..+..|+.|+|. ..+|+.++.+. ...+.++||....+ + .+.++.++. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23346788899873 45677776431 12235667765432 2 344455555 999999999973 4678
Q ss_pred EEECCCcEEEEEcCCCe-----------------eEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 589 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 589 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
+++.|| |+||.+.... .+..+. ..++...|..+.|+-.|..|++.+.||.|++|...-
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999 9999987311 111221 234456799999999999999999999999998653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=188.25 Aligned_cols=243 Identities=15% Similarity=0.176 Sum_probs=188.5
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceE------------------eccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLE------------------IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
|.|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|...-+. +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 68999999999999999863322221111 2379999999999988777 8999999999999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|-.++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999999999999999999976 5679999999999999999853333222223457888999998877776664
Q ss_pred CCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
.+|+|+-+|++.. +++.+++.|. .+|.++++++..+ .+++++.|+.|++|++..-.........-......|
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC 423 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence 2789999999865 8899999988 8999999998754 566799999999999875443222211111222456
Q ss_pred EEEecCC-CEEEEEECCCcEEEEECCCCCeee
Q 001396 622 ICFNKNG-TLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 622 v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
.++.|+- -.++.|+..+.+++||+.+...+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 6777754 467778888889999998875543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=192.10 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=201.8
Q ss_pred ceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeE
Q 001396 741 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI 819 (1086)
Q Consensus 741 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i 819 (1086)
..|+.+..+|.|.+++....... ++ ++.+... ..|...|..+.+-|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~e--e~~lk~~---~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LE--ERQLKKP---LAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hh--hhhhccc---ccccceeEeeccCCCceeEEEccCCcee
Confidence 44666777899999986543221 01 1111111 14899999999999767777776 7899
Q ss_pred EEEEccCceEEEE--EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------------
Q 001396 820 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------- 871 (1086)
Q Consensus 820 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-------------------------- 871 (1086)
++||+++.+++.. +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999986321
Q ss_pred -eEEEeccccCCeEE---EEEeCCCCEEEEEeC-CCcEEEEECCCCceeee-eeee--ccCCCccCCCCceEEEEecCCC
Q 001396 872 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTC-RSLQ--TPDGVMTLAPSETHIQFHKDQT 943 (1086)
Q Consensus 872 -~~~~l~~h~~~v~~---l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~-~~~~--~~~~~~~~~~~v~~~~~s~dg~ 943 (1086)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ .... ....+..-.-.+.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01222345556666 666678899999998 99999999987442211 1111 1111111113567777778889
Q ss_pred EEEE-EeCCeEEEEEcCCccce-eccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCC
Q 001396 944 RFLL-VHETHLAIYEAEELTCL-KQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 944 ~l~~-~~d~~i~vwd~~~~~~~-~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1019 (1086)
+|.+ +.|+.|+.|++.+-..- ...+.++ ...-..-..|||+.+|++|+.|..+++|.+.+-+.--.+. +.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G-- 358 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG-- 358 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence 8887 79999999999864432 1223333 1122223469999999999999999999998876542222 22
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 1020 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 1020 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
+.+...+++|.|.+-.-++++++|.++++|++..
T Consensus 359 ---ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 359 ---HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ---cceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 2345567888876667789999999999999943
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=201.11 Aligned_cols=284 Identities=16% Similarity=0.257 Sum_probs=216.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ccceEeccc---cccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h---~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
....+++..++-..|+.++.. .++||.+...... .....+... ...+..|.|..-..+ +|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence 456677888998888888654 5788887654321 111111111 124566788755444 8999999999999999
Q ss_pred CC---CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEEe
Q 001396 467 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG 542 (1086)
Q Consensus 467 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 542 (1086)
.. .+.+..|..|...++++.|++.. ..+|++||.||+|++||++......++......|..+.|+| .+..++++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 87 56678899999999999999764 46999999999999999999999999988888999999999 456666665
Q ss_pred eCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 543 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
. .|.+++||++.. ++...+..|. ++|.++.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++..
T Consensus 197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r 268 (839)
T KOG0269|consen 197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR 268 (839)
T ss_pred C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence 4 778999999854 4566677776 999999999999999999999999999998765433332222 346899
Q ss_pred EEEecCCC-EEEEEE--CCCcEEEEECCCC-CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 622 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 622 v~~s~~~~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
+.|-|+.. +|++++ .|..|+|||+... -+...+..|...++.++|. +.|...+.+
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s 327 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS 327 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence 99999654 555554 3788999999865 5567777888888888886 344556777
Q ss_pred ccccCccce
Q 001396 698 VEAENKSEV 706 (1086)
Q Consensus 698 ~~~d~~i~v 706 (1086)
++.|+++..
T Consensus 328 ~sKD~tv~q 336 (839)
T KOG0269|consen 328 CSKDGTVLQ 336 (839)
T ss_pred ecCccHHHH
Confidence 777776544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=213.74 Aligned_cols=298 Identities=15% Similarity=0.236 Sum_probs=228.7
Q ss_pred ceEeeecCCCceEEEEEec----------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 331 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
-..++|||++..++|+|.. +.++.||.+.-...... .+..--..-......++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeecc
Confidence 4568999999866887753 33445554432111100 00000111246778999999
Q ss_pred CCCE----EEEEeCCCEEEEEEecC---CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 401 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 401 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+...
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444445567789999999999999887 79999999999999998866555
Q ss_pred Eee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC--ceEEEEEecCCCEEEEEeeCCCCce
Q 001396 474 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 474 ~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
+.. ...+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.+ .+..++|+|++..-+....+.+..-
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 542 24577999999743 557899999999999999999988877766655 5788999998764443333456688
Q ss_pred eEEEEeCCC-CeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 550 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 550 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
.|.+||++. ...++++++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ...+..+.|+|.
T Consensus 233 viqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPR 307 (1049)
T ss_pred eeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCC
Confidence 999999874 45677888888 899999999987 78889999999999999999999999864 346889999995
Q ss_pred CC-EEEEEECCCcEEEEECCCCC
Q 001396 628 GT-LLAVIANENRIKILETPESN 649 (1086)
Q Consensus 628 ~~-~l~~~~~dg~i~iw~~~~~~ 649 (1086)
.. .+++++-||.|.|+.+.+..
T Consensus 308 ~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 308 NPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcchhhhheeccceeeeeeecCC
Confidence 54 88999999999999988653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-17 Score=189.78 Aligned_cols=369 Identities=23% Similarity=0.363 Sum_probs=275.6
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCc-eeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEE-C
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S 399 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 399 (1086)
.+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 4578899999999999998 48888889999999998886 3322 33322 46777777 8
Q ss_pred CCCC-EEEEEeC-CCEEEEEEecC-CCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEe
Q 001396 400 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 400 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~~~~~~~~~ 475 (1086)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|+++ .+++++. |+.+++|++.++..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 43333 5779999999999999999 6777775 999999999999999999
Q ss_pred ecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 476 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+|...|.++++. +++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 9999999999997 4555 55555999999999888666666 566666664 4489999988886665 778999
Q ss_pred EeCCCCee-eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc--CCCCCCCCceEEEecCCCE
Q 001396 554 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 554 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~ 630 (1086)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.+.+++..
T Consensus 268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 342 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSL 342 (466)
T ss_pred eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCE
Confidence 99987665 44444444 899999999988899988888999999998887776665 3332 5788888433356
Q ss_pred EEEE-ECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee-ccccCccceee
Q 001396 631 LAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEK 708 (1086)
Q Consensus 631 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~vw~ 708 (1086)
++.+ ..|+.+.+|+............... +..+.+. ++ ..... +..++.+.+|+
T Consensus 343 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWD 398 (466)
T ss_pred EEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEe
Confidence 6665 6788999999988762222222211 4555554 22 22333 67788999999
Q ss_pred eeecCCccccccccCCcccc-cceEEEEEecCCceEEEeeccceeEEeeccC
Q 001396 709 PLFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
........... .. ..+....+++++..++.++.++.+++|+...
T Consensus 399 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 76432221111 11 6788899999999999988899999987643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-16 Score=185.68 Aligned_cols=372 Identities=24% Similarity=0.396 Sum_probs=285.4
Q ss_pred eccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecCCc-ceEEEeecccCCcc-EEEEEEc-CCeEE
Q 001396 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK 506 (1086)
Q Consensus 431 ~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~s~-dg~i~ 506 (1086)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 558999999999999999 78888899999999998887 6777776443 77777775 55555 5555444 99999
Q ss_pred EEEcCC-CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 507 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 507 vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
+|+... ......+..+...+..++|+|+++.++.++. .++.+.+|+...+..+..+.+|. ..+.+++|+|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 211 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence 999998 7778888899999999999999998777753 37789999999988888888866 8999999999998
Q ss_pred -EEEEEECCCcEEEEEcCCCeeEE-EEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe-eeecccccccee
Q 001396 586 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR 662 (1086)
Q Consensus 586 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~ 662 (1086)
.+++++.|+.|++||...+.... .+..+... . ...|++++.++++++.|+.+++|+...... +...
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------- 280 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------- 280 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence 44555999999999988777777 56555432 2 228999998999999999999999886533 1110
Q ss_pred eeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCce
Q 001396 663 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 742 (1086)
Q Consensus 663 ~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 742 (1086)
..|...+.++.+.|++..
T Consensus 281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence 014556778888888888
Q ss_pred EEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE--eCCeEE
Q 001396 743 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS 820 (1086)
Q Consensus 743 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~dg~i~ 820 (1086)
+++++.++.+.+|+...... ..... ...|...+..+.+.+++..++.+ .++.+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88877787788886544321 11111 01255578888884343566655 368899
Q ss_pred EEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEe
Q 001396 821 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 821 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 899 (1086)
+|+.............. .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 355 LWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred eeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 99998877333333222 288999998 7 55554 88999999999999888777775547799999999999999999
Q ss_pred CCCcEEEEECCC
Q 001396 900 GDAQIFVWDVDG 911 (1086)
Q Consensus 900 ~dg~i~iwd~~~ 911 (1086)
.++.+++|+...
T Consensus 432 ~~~~~~~~~~~~ 443 (466)
T COG2319 432 SDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEeccC
Confidence 999999999987
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=180.65 Aligned_cols=291 Identities=13% Similarity=0.163 Sum_probs=219.4
Q ss_pred ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE-EEEEeCCCEEEEEEecCCCc-cc
Q 001396 349 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL-LGVAYSKHIVQLYAYHGGSD-AR 426 (1086)
Q Consensus 349 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-las~~~d~~i~iwd~~~~~~-~~ 426 (1086)
...+++|||...-+...... -......+.++.|+....+ +|+.+.|..|++|.-..... +.
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred cCCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc
Confidence 33679999987655443210 0111234889999887642 33346778899997554311 11
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEE
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 506 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 506 (1086)
......+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++. ...+|++++..|.|.
T Consensus 73 ~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 73 RVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDII 146 (673)
T ss_pred eeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEE
Confidence 11122222 333444333334 899999999999999998888889999999999999865 447999999999999
Q ss_pred EEEcCCCceeEEecCCCC-ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 507 AWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
+-.+.++.....+....+ .+.-+.|++..+.++....+ +|.|.+||+....++..+.. .|..+...++|+|.+.
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNE 221 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCcc
Confidence 999998888777776644 56689999998887765532 78899999998877665543 3358899999999765
Q ss_pred -EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-Ceeeeccccccceee
Q 001396 586 -QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRK 663 (1086)
Q Consensus 586 -~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~ 663 (1086)
.+++.+.|..|.+||....+....+.... +...++|+++|.+|+.|...|.|..||++.. .++..+..|...|++
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred ceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 55668999999999999887777775443 3689999999999999999999999999855 778889999999999
Q ss_pred eEEccCC
Q 001396 664 LSVNPIS 670 (1086)
Q Consensus 664 ~~~~p~~ 670 (1086)
++|-|..
T Consensus 299 vafq~s~ 305 (673)
T KOG4378|consen 299 VAFQPSP 305 (673)
T ss_pred EEeeecc
Confidence 9998754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-19 Score=174.65 Aligned_cols=263 Identities=16% Similarity=0.211 Sum_probs=186.3
Q ss_pred eccCCCCceEeeecCCC-ceEEEEEeccCcEEEEecCCCceee-eeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 324 LIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg-~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
...|.+.++.+.-++-| ..+.|+=+..|.|.|||+..--... .-.+.+-+ ....+...+.+|...=+.++|||-
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeecccc
Confidence 34777788888888765 3356777778999999985321100 00000000 111122237899999999999992
Q ss_pred -CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEeec
Q 001396 402 -GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG 477 (1086)
Q Consensus 402 -g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 477 (1086)
-..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. +++|||.||+|+|||++.+ .++.+ +.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 224778877778999999987654444467789999999999998877 8999999999999999988 33333 88
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC---ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
|.+.|+.+.|+.. -.+|++|+.||+++|||++.. +++..++.|..+|+++.|+|...-.+.++. .|.+|.+|
T Consensus 301 h~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiW 375 (440)
T KOG0302|consen 301 HNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIW 375 (440)
T ss_pred cCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEE
Confidence 9999999999654 349999999999999999764 456789999999999999996654444332 27789999
Q ss_pred eCCCCee----------------eeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEE
Q 001396 555 NESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 599 (1086)
Q Consensus 555 d~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw 599 (1086)
|+..-.- .+.+--|+ ....+..+.|++.- .++++.+.|| +.||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 9863211 01111121 12467788888874 3566666776 4444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=180.13 Aligned_cols=293 Identities=16% Similarity=0.215 Sum_probs=214.3
Q ss_pred EEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE--EECCCcEEEEECCCCCeeeeccccccceeeeE
Q 001396 588 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV--IANENRIKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 588 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
..++....+++||....+....+..+...+.+.++.|+.... |++ .+.|..+++|.-.....
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------- 69 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------- 69 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence 344444579999998877777666666666789999988664 444 34577788886442200
Q ss_pred EccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEE
Q 001396 666 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 745 (1086)
Q Consensus 666 ~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 745 (1086)
+|.+-... ....-.|++......++++
T Consensus 70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence 00000000 0011123333344478899
Q ss_pred eeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEc
Q 001396 746 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 824 (1086)
Q Consensus 746 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~ 824 (1086)
++..+.|+|||+... +....+. +|...|+++.+.-...+||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999988643 1111222 38899999999999999999995 88999999
Q ss_pred cCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-ccccCCeEEEEEeCCC-CEEEEEeCC
Q 001396 825 MTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGD 901 (1086)
Q Consensus 825 ~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~v~~l~~spdg-~~l~s~s~d 901 (1086)
.++.....|.... ..|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|||.. .+||+.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 9998888887654 456689999955667888999999999999987766554 5699999999999954 678899999
Q ss_pred CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEEE
Q 001396 902 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 980 (1086)
Q Consensus 902 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 980 (1086)
..|.+||+....... ++.. ..+.+.++|+++|.+|++| ..|.|..||++........+..|...|++++|
T Consensus 231 kki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 999999998643222 2211 1258899999999999995 77999999999776665567789999999999
Q ss_pred eCCC
Q 001396 981 SCDC 984 (1086)
Q Consensus 981 s~dg 984 (1086)
-+..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=178.86 Aligned_cols=312 Identities=13% Similarity=0.116 Sum_probs=224.5
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
++.+-......+.+...|.+++|+|. .+.+++++|+..|.|-+|++.+.++.....+.+.
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~ 231 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT 231 (498)
T ss_pred ccccceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec
Confidence 33344455566777888999999974 4457899999999999999975444444443333
Q ss_pred CcccccceEEEEEecC-CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 724 SKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
.|..+|.++.|+|. -..+++.+.||++++-|+...... . ++... .....+..+
T Consensus 232 --~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~ 285 (498)
T KOG4328|consen 232 --PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSL 285 (498)
T ss_pred --cCCccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeec
Confidence 38999999999995 456888899999999887654220 0 11100 134556778
Q ss_pred EeecCCCEEEEEeC-CeEEEEEccCceE-EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEe
Q 001396 803 ALSKNDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKL 876 (1086)
Q Consensus 803 ~~s~dg~~l~~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l 876 (1086)
.|+.+...++.+.+ |...+||+.++.. ...+.-|...|++++++|-...++|+++.|++++|||++.-. ++-..
T Consensus 286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 88888888888875 8999999987654 666777888999999999888899999999999999997632 22333
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC---CCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCe
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 952 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 952 (1086)
..|...|.+..|||++..|++.+.|..|+|||.. .... ....+.....+..+ -...-.+|.||..+++++ ....
T Consensus 366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCccccc-ccchhheeCCCccEEEEeccCcc
Confidence 4599999999999999889999999999999984 2111 11122221111000 124557899999999996 5677
Q ss_pred EEEEEcCCccceeccccCCccCEEE-EEEeCCCC-EEEEEECCCcEEEEEcCC
Q 001396 953 LAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCR-MVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~-~l~s~~~Dg~v~vWd~~~ 1003 (1086)
|-|+|-..++.+.++.......|.+ ..|.|-+. +++-++..|.|+||--+.
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 9999999999887755544445555 46889776 444445567888886543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=168.42 Aligned_cols=407 Identities=10% Similarity=0.124 Sum_probs=260.3
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
-+.|||+|+++|+++.- .+.|-|.++-+..+.. .--+.|..+.|..|.-. .+.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 6888888876543321 22456888999999885 566778899999999999988888
Q ss_pred eecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 475 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+.....++.+++|+| || +.|.+...|-.|.+|.+.+.+.... ......+..++|+|||++.+.++.- |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999965 55 5777788899999999988665443 3344456889999999999988752 22223334
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
..-+....++.+.... -....+.|+|||..+++ ||.--.-.+...... -.+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEe
Confidence 3333445556666555 66788999999987765 442211111111111 23788999999999999
Q ss_pred EECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 634 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
|+.|+.+++.+--+-+.+..+- |...+ .|.+..+-..+..+
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999987654333222211 00000 01110000000000
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCce--ecCCCCCceeeecCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL--YQPRHGPQFMVNDTT 791 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 791 (1086)
. -.-...++.|.|..- ...+|....... ......+++ ..+.+. .
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y-----E~~~~pv~~~~lkp~tD-------~- 314 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIY-----EQQMTPVKVHKLKPPTD-------F- 314 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhh-----hhhhcceeeecccCCCC-------C-
Confidence 0 001122333433221 011111100000 000000000 000010 1
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeC---CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 868 (1086)
.+..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|+...|.| +...|+.+.....+++|...
T Consensus 315 -pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 315 -PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCC
Confidence 123456778999999999999986 569999998776655443 456899999999 77788888878889999887
Q ss_pred CceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 001396 869 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 903 (1086)
Q Consensus 869 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~ 903 (1086)
....+.. .+..-.|..+.|.-+|..++..+.|.-
T Consensus 392 g~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 392 GPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 6555543 333467999999999999999998873
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=169.85 Aligned_cols=325 Identities=16% Similarity=0.209 Sum_probs=225.0
Q ss_pred eeecCCCccEEEEEECC----C-CCEEEEEeCCCEEEEEEecCCCccccceEe--ccccccEeEEEecCCCC--cEEEEE
Q 001396 384 ALVRDPGVSVNRVVWSP----D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEI--DAHVGNVNDLAFSAPCK--QISVIT 454 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~sp----d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~d~~--~l~l~s 454 (1086)
.+..+|+.+|..++|++ + -..+|+++. ..+.+|.......++.+... ..|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999985 2 344555544 46899998765533332222 24777888899977643 348888
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe---cCCCCceEEEEE
Q 001396 455 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 531 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~ 531 (1086)
||.-|.|+|.|+.++++...+.+|...|+.+.++|. +.++++++|.|..||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 999999999999999999999999999999999886 4579999999999999999999998876 567789999999
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++|.++++++. |..|.+|++...+....+. .+..|+|++...=.-. -...+.+.. +..
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE---------~s~~~~~~~t~~pfpt--~~~~fp~fs------t~d 248 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLE---------LSITYSPNKTTRPFPT--PKTHFPDFS------TTD 248 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhh---------hhcccCCCCccCcCCc--ccccccccc------ccc
Confidence 999999999987 7889999998654322221 1133444432210000 001111110 111
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC-CCCeee-------------eccccccceeeeEEccCCCceeccc
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVD-------------AAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~-------------~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
-+...|.|+.|- |.++++-+-++.|..|... -.+.+. .+.-....++.+.|.
T Consensus 249 --iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~---------- 314 (385)
T KOG1034|consen 249 --IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA---------- 314 (385)
T ss_pred --cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe----------
Confidence 122345555555 4567777777777777652 111111 111112223333332
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
| .+-++.|+.|...|.+.+||+...++..+..+.-+. ....|+..+|+.||..++....|++|.-||.
T Consensus 315 ------~----d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~--~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 315 ------F----DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK--SGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ------e----cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc--ccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 1 466889999999999999999988876555554333 5678999999999999999999999888874
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-17 Score=177.30 Aligned_cols=605 Identities=13% Similarity=0.128 Sum_probs=361.9
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-------
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------- 401 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------- 401 (1086)
..-.++.|+|.| |+|-|+. ..|.+-|..+-+.+.. +..|...|+.+.|.|-
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 357889999999 6888886 6789999888877765 6678999999999872
Q ss_pred -----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 402 -----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 402 -----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~---d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.-+||++...|.|.+||...+..+. .+..|..++..++|-+ +++. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 1267888889999999999887554 5778899999999865 3434 56666668899999999999988
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc-------eeEEecCCCC----------------------
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-------ARVDYDAPGL---------------------- 524 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~---------------------- 524 (1086)
..........++.+.|... ..+..-+..|.+.+.+.-... .......+..
T Consensus 150 k~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 8776667777788776643 455555566666666542211 1111111110
Q ss_pred ---ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC--CEEEEEECCCcEEEE
Q 001396 525 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIW 599 (1086)
Q Consensus 525 ---~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iw 599 (1086)
-...++|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|
T Consensus 229 fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123567886665555444 3459999999888887776655 666667776664 578999999999999
Q ss_pred EcCCC----------------eeEEEEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEEECCCCCeeeec--------
Q 001396 600 DMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAA-------- 654 (1086)
Q Consensus 600 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~-------- 654 (1086)
-.+.. .....+..-... .....+..|. ...+++.-.+|.+.+|.+.+++.-...
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 76542 111111111111 1122233342 445556666788888888755321111
Q ss_pred -----------------------cccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 655 -----------------------GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 655 -----------------------~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
.+|.....+....|...........+ ......-..+++.|...|+|.+.|+.+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~----~n~~~~~~pLvAvGT~sGTV~vvdvst 456 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG----GNTPAGTVPLVAVGTNSGTVDVVDVST 456 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC----CCccceeeeeEEeecCCceEEEEEecc
Confidence 12222233333332222221111000 000011134678899999999999875
Q ss_pred cCCccccccccCCcccccceEEEEEecCCceEEEeecc--ceeEEeeccCCccccCcccccccCCceecCCCCCceeeec
Q 001396 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 789 (1086)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 789 (1086)
........ .|...|.++.|......+-.+.+. ..-.+ -...+.+-++.+|.......
T Consensus 457 ~~v~~~fs------vht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 457 NAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhhhhc------ccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEccccccccccc
Confidence 44333333 388899999998877754433321 00000 01234556667776443333
Q ss_pred CCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEc-CC---------------CCCE
Q 001396 790 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV 852 (1086)
Q Consensus 790 ~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~ 852 (1086)
+.+ ..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++...-.-.-|+.++|+ |. ..+.
T Consensus 516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~ 594 (1062)
T KOG1912|consen 516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL 594 (1062)
T ss_pred CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence 332 4688999999999999999997 6779999998877665544333447888887 31 1123
Q ss_pred EEEEeCCCeEEEEEcCC-------ceeE-EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccC
Q 001396 853 IAIGMDDSTILIYNARS-------SEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 853 lasg~~dg~v~iwd~~~-------~~~~-~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
.+..+.| .+++.+.. +... ...+.....+..++| .+..|+.|..+|.+.+||+.....+...-...+.
T Consensus 595 vv~ds~e--s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~r 670 (1062)
T KOG1912|consen 595 VVLDSVE--SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPR 670 (1062)
T ss_pred eeecccc--chheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCch
Confidence 3333322 23333211 1111 111111123344666 4678999999999999998763211100011111
Q ss_pred CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 925 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 925 ~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
. ...-..+-|....+++-...-+.+||.+....+..+ .|. ..++..+.+......++. .|.++|+-.+.
T Consensus 671 a------~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 671 A------HSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVLP--NDNKERFRVMP 741 (1062)
T ss_pred h------hheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceecC--CCCceeEEecc
Confidence 1 122333345434455555566899999887777664 333 344555555554444443 45578877766
Q ss_pred CCcee
Q 001396 1003 NLEVQ 1007 (1086)
Q Consensus 1003 ~~~~~ 1007 (1086)
.....
T Consensus 742 mks~~ 746 (1062)
T KOG1912|consen 742 MKSPP 746 (1062)
T ss_pred ccCCc
Confidence 55443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=171.48 Aligned_cols=499 Identities=14% Similarity=0.115 Sum_probs=296.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeE-EEe-----cCCCCcEEEEEEeCCCcE
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAF-----SAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~-----s~d~~~l~l~s~~~d~~i 461 (1086)
.|...|.|+.|+.+...+.+++++..+.-||+.+... ... .+ ...-|.. +-. ...++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4677888999998888777776555555555544322 111 11 1111111 111 111111157778889999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
.+.+ +.|+.-+.+..|.+.+.+-.|+ +||.-|+++++||.|++|.- ++-...++.....+|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 8888889999999999999995 47778999999999999963 333333445566689999999999988887
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
. .+.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||... ..+..-..| ..+|++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~ITS 232 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAITS 232 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChh--ccceee
Confidence 6 3457777777666677778877 9999999999999999999999999999754 444433333 346999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|+ +.+++++.+ ++++ .
T Consensus 233 va~npd-~~~~v~S~n-t~R~---~------------------------------------------------------- 252 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARF---S------------------------------------------------------- 252 (737)
T ss_pred eeeccc-cceeeeeee-eeee---c-------------------------------------------------------
Confidence 999999 667766542 3331 0
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCC
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
....+.|..++||+||..+++++..|.+.+--.-..
T Consensus 253 -----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq--------------------- 288 (737)
T KOG1524|consen 253 -----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ--------------------- 288 (737)
T ss_pred -----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh---------------------
Confidence 013457888999999999999988887754210000
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-eCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
..+ + +.+=++. ....|.+-|+.++.+ ..-.....|...+.+- + +|+++. ..
T Consensus 289 ---------------~l~-----~--~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT-s~ 340 (737)
T KOG1524|consen 289 ---------------QLV-----S--GNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT-SL 340 (737)
T ss_pred ---------------hhh-----h--ccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe-cc
Confidence 000 0 0111112 235566777665544 2222445666666554 3 333333 34
Q ss_pred eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 861 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 861 ~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.|++|.-......-.+.+....+.-+.-+ ...+++ ....+|.++..+...... ..+.+... .....-..|-
T Consensus 341 qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsL 411 (737)
T KOG1524|consen 341 QVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSL 411 (737)
T ss_pred EEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeec
Confidence 68887765544334444444333222221 112222 233346666555411100 01111111 1122223343
Q ss_pred CCCEEEE--E-eCCeEEEEEc-CCccceecc-ccCCccCEEEEEEe----CCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 941 DQTRFLL--V-HETHLAIYEA-EELTCLKQW-FPISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 941 dg~~l~~--~-~d~~i~vwd~-~~~~~~~~~-~~~h~~~v~~l~fs----~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
....|+. . ....+.+||. .+|+....- ...|...|..++.. ++++.++.-...+.++|=.+.+...-.++.
T Consensus 412 andtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~ 491 (737)
T KOG1524|consen 412 ANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY 491 (737)
T ss_pred ccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh
Confidence 4445555 2 3345889998 666654321 12345556555554 345566666555666655444322221221
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1012 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
... .....++|+ |...+++|-.|+++.||=.+...
T Consensus 492 KiG----------TmVhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 492 KIG----------TMVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhh----------hhhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 111 123457788 56789999999999999887654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-18 Score=170.14 Aligned_cols=237 Identities=16% Similarity=0.261 Sum_probs=186.5
Q ss_pred eecCCCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 385 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
...||.++|..++|+| +...||+|+.|.+|.||.+-.+... .....+.+|..+|.-++|+|...+ +|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 3789999999999999 6778999999999999999765442 234468899999999999999887 789999999
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC-ceEEEEEecCCCEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL 538 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l 538 (1086)
+|.+||+.+|+.+.++. |...|++++|+ .||.+|++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 99999999994 5888999999999999999999998887766655 556677889999 6
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCee-EEEEcCCCCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL 616 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~ 616 (1086)
++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.|.+|.+.++. |-.|+.|+.|.+....+ +.-+......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 6666677778999999977644332222221 1346666778899888766 45899999999987653 2333322223
Q ss_pred CCCceEEEecC
Q 001396 617 PENPRICFNKN 627 (1086)
Q Consensus 617 ~~v~~v~~s~~ 627 (1086)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34466777764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=166.38 Aligned_cols=302 Identities=13% Similarity=0.139 Sum_probs=216.8
Q ss_pred ccceEEEEEecCCc-eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 728 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 728 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
..++.++.|.+++. .+++++.|..|++|.+........+ +.....-.+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 45688889988877 8999999999999998765321111 0112222233 3899999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcc--------C--------ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001396 807 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 807 dg~~l~~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 869 (1086)
+|..+|+|+| |.+.+|-.. + +.....+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999985 889999765 2 445667788999999999999 999999999999999999999
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeee---eeeccCCCccC------------CCCce
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR---SLQTPDGVMTL------------APSET 934 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~------------~~~v~ 934 (1086)
|+++..+.+|...|..++|.|-++++++-+.|...+++++......... .+....+.... .....
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999999999999999999987777766542211100 00000000000 02346
Q ss_pred EEEEecCCCEEEEE-----eC-----CeEEEEEcCCccceeccccCCccCEEEEEEeC------------------CCCE
Q 001396 935 HIQFHKDQTRFLLV-----HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM 986 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-----~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~------------------dg~~ 986 (1086)
.++|+|||.+|++. .. +..++|+-+........+++-..++..+.|+| -+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999972 12 33567765544433333444466666777765 1223
Q ss_pred EEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 987 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 987 l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
+|.++ ...|+|||.++-..++......|.. ...++|++ ||..|+..+.||-..+-.+...+
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~---------iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA---------ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeee---------ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44554 4579999999988887776333222 34789999 89999999999987776654433
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=195.49 Aligned_cols=286 Identities=19% Similarity=0.287 Sum_probs=221.6
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
.++.|.||...|.|+.|...|+| +++|+.|..|+||..+++.++.. ..||++.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence 34567899999999999999986 99999999999999999999987 88999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE---ee
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE 476 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~---~~ 476 (1086)
.+..++|+++.|..|++|.+..+..+. .+.+|++.|++++|+|- .+.+.||++++||..-.-.+.. ++
T Consensus 242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCC
Confidence 999999999999999999999998766 67899999999999994 3678899999999771111110 11
Q ss_pred -cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE-EEEEeeCCCCceeEEEE
Q 001396 477 -GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 477 -~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~iw 554 (1086)
....-+.++.| ..++..+++++.|+.-..|.+.-... +...+.-+.++.|-.. .++.- .+..+.+|
T Consensus 313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vw 380 (1113)
T KOG0644|consen 313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVW 380 (1113)
T ss_pred cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeee
Confidence 11233444444 44667899999999988886543211 1112222223323322 22222 26678999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
++.+|.....+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+....||+||..++.
T Consensus 381 nl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 381 NLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred ecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEec
Confidence 999999999999988 8999999999877664 5899999999999999888776633 234678899999999999
Q ss_pred EECCCcEEEEECCCCCee
Q 001396 634 IANENRIKILETPESNSV 651 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~ 651 (1086)
..+-|.+.|.....+...
T Consensus 456 sd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 456 SDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCCCCceEEeccCCCccc
Confidence 988999999887765443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=171.88 Aligned_cols=562 Identities=15% Similarity=0.146 Sum_probs=328.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC----------CCcEEEEEEeCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDKT 460 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d----------~~~l~l~s~~~d~~ 460 (1086)
..-.++.|+|.| +||.|+.. .|.+-|..+-+.+. .+.-|...|+.+.|.|- ...++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346688999877 78888665 58888988766555 67789999999999763 24567899999999
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCc--cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~ 537 (1086)
|.+||...+..+..+..|..++..++|.+..+. ..|++.....++.+|+..+++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876553 4788888899999999999999888887777777888888 4455
Q ss_pred EEEEeeCCCCceeEEEEeCCC-------CeeeeEEecccc-------------c---CCc------eEEEEEecCCCEEE
Q 001396 538 LFSCGTSKEGESFLVEWNESE-------GAIKRTYQGLQL-------------Q---HNS------VSVVHFDTAKDQIL 588 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~-------~~~~~~~~~~~~-------------~---~~~------v~~~~~~~~~~~l~ 588 (1086)
+...+. .|.+.+-+.-. |+..+.-..|.. + ... ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 544432 33444443221 122211111110 0 000 11246788777677
Q ss_pred EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC--CCEEEEEECCCcEEEEECCCCCeeeec-----c-ccccc
Q 001396 589 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNSVDAA-----G-VLSDN 660 (1086)
Q Consensus 589 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~-~~~~~ 660 (1086)
-......+.++|++-..++.....+.+. +.-+.+-|+ ...|++...||.+.+|-.+........ . .....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q 324 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ 324 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence 7777888999999999999888877553 445666665 457999999999999987653211111 0 00111
Q ss_pred eeeeEEccCCCceeccccCCeeeecCCCCCC-cccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecC
Q 001396 661 LRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG 739 (1086)
Q Consensus 661 v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 739 (1086)
+.++.. ..... .+.+...|. ...++.--++|.+.+|++..+......... ...-+..+.|.
T Consensus 325 ~~~vr~--m~~~r---------p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~-- 386 (1062)
T KOG1912|consen 325 VHVVRP--MEEFR---------PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFN-- 386 (1062)
T ss_pred eEEEee--chhcc---------cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----ccccccccccc--
Confidence 111111 00000 000111222 333444455677788876521111000000 00000001110
Q ss_pred CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeE
Q 001396 740 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 819 (1086)
Q Consensus 740 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i 819 (1086)
+..+..+ . .. +......+ +|.....+....|-.+.
T Consensus 387 ~~~~~v~---------k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~--------- 421 (1062)
T KOG1912|consen 387 LSTKLVG---------K-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPEL--------- 421 (1062)
T ss_pred Cceeehh---------h-----------------cc---------ccchhhcC-CCCCCceeeecccCccc---------
Confidence 0000000 0 00 00000000 13333333333221111
Q ss_pred EEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEe
Q 001396 820 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 820 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s 899 (1086)
...... . +.=+....-| ++|.|...|+|.++|+.++..-+.+..|.+.|.++.|-.... |++.+
T Consensus 422 --------t~~~~~--p-~~n~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfs 485 (1062)
T KOG1912|consen 422 --------TKVEND--P-GGNTPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFS 485 (1062)
T ss_pred --------ceeecC--C-CCCccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEee
Confidence 111111 1 1111122233 899999999999999999999999999999999999976543 44433
Q ss_pred C----------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccc
Q 001396 900 G----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWF 968 (1086)
Q Consensus 900 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~ 968 (1086)
. -+.+.|-|+.+|..+..+.++..+. .+|+.+..|.-|+||++. .+.-+.+||+++..+++..-
T Consensus 486 ys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS 560 (1062)
T KOG1912|consen 486 YSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMS 560 (1062)
T ss_pred eccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHHh
Confidence 2 2457788998877544333333322 479999999999999995 77889999998877776422
Q ss_pred cCCccC-EEEEEEe-CCC----------------CEEEEEECCCcEEEEEcCC-CceeeeeccccccCCCCccC-cccce
Q 001396 969 PISSVP-ISQATFS-CDC----------------RMVFTSFVDGTLSIHEASN-LEVQCRILSTAYLRPTTSCL-HVYPH 1028 (1086)
Q Consensus 969 ~~h~~~-v~~l~fs-~dg----------------~~l~s~~~Dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 1028 (1086)
-.-+ |+.+.|+ |.- ...++.+.|. +++.+.. +....... ..... ..+ .....
T Consensus 561 --~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgs---q~~~a-~esfafal~ 632 (1062)
T KOG1912|consen 561 --LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGS---QVNTA-WESFAFALC 632 (1062)
T ss_pred --hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhcccc---chhhH-HHHHHHHHH
Confidence 2344 8889998 321 1233333222 2222211 11110000 00000 000 11123
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.++|- +..++.|+.+|.+.+||+..-+
T Consensus 633 ~mAwk---~d~lv~GD~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 633 AMAWK---DDILVVGDVEGNLVVWDLGRRQ 659 (1062)
T ss_pred hhhcc---CCeeEeecccCceeEEeccccc
Confidence 46665 4799999999999999975443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=162.26 Aligned_cols=289 Identities=14% Similarity=0.200 Sum_probs=206.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC-------CCCCE
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL 404 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pdg~~ 404 (1086)
..+.|||||.- |.+-+.|..+.+|++...-.-.....+. ........ --.....|...+|- |+..+
T Consensus 53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~----~~~~~~~~--r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL----NFSKHLSY--RYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred ccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc----ccccceeE--EeccCCEEEEEEeeeccccCCCccce
Confidence 45789999985 7778899999999985321100000000 00000000 11123556666664 68889
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccc---cEeEEEecCCCCcEEEEEEeCCCcEEEEeC-CCCcee--EEee--
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSFE-- 476 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~-~~~~~~--~~~~-- 476 (1086)
+|+.+.+.-|++||.-+|+...... ...|.. ...+++|+|||. .|+. +....|+++|+ +.|+.- ....
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhhc
Confidence 9999999999999999998544221 223444 346799999999 5664 45789999998 455432 2211
Q ss_pred ---cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 477 ---GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 477 ---~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+..+.+.+++|+|. +...++.++...++-++.-...++...+-+|.+.|+.+.|.+||+.|++|+.- +..|..
T Consensus 202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILC 277 (406)
T ss_pred ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEEE
Confidence 23677888899876 45689999999999999999999999999999999999999999999999863 557999
Q ss_pred EeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 554 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 554 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
||++. +.++..+..|......-.-....|++++|++|+.||.|++||+++ +.....+..+. ..++.++++|--.++
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpil 355 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPIL 355 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCccccee
Confidence 99984 566677777662122223345678899999999999999999998 66566665443 348899999987778
Q ss_pred EEEECC
Q 001396 632 AVIANE 637 (1086)
Q Consensus 632 ~~~~~d 637 (1086)
++++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 777654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=173.19 Aligned_cols=252 Identities=13% Similarity=0.209 Sum_probs=185.3
Q ss_pred CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccce------eeeeeeecCCCccEEEEEECCC-CCEEEEEeCCC
Q 001396 340 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM------LFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH 412 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~ 412 (1086)
|+ ++|.|+.|..|.|||+.--..+. +...+..... ........+|+..|-+++|+.+ ...||+|+.|.
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 56 59999999999999986322211 1111110000 0012235589999999999986 45789999999
Q ss_pred EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcceEEEeecccC
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~ 491 (1086)
+|++||+.+|++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..+ ...+.|-.++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCC
Confidence 99999999998766 56689999999999998776 8999999999999999853333 233 256788899998764
Q ss_pred CccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEE-EEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
. ..++++..||+|+-+|++.. +++.++..|..+|.++++++.-..++ +++. ++.|.+|++..-..... ..|.
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vklw~~~~~~~~~v-~~~~ 415 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVKLWKFDVDSPKSV-KEHS 415 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEEEEeecCCCCccc-cccc
Confidence 3 57888899999999999987 67889999999999999998766544 4443 78899999875433211 1222
Q ss_pred ccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeE
Q 001396 570 LQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~ 607 (1086)
..-+...|.++.|+-..++ .|+..+.++|||+.+...+
T Consensus 416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 1124567778888866554 4777888999999876543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=165.31 Aligned_cols=248 Identities=23% Similarity=0.287 Sum_probs=190.5
Q ss_pred ecCCCccEEEEEECCCC--CEEEEEeCCCEEEEEEecCC-------------CccccceEeccccccEeEEEecCCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDG--SLLGVAYSKHIVQLYAYHGG-------------SDARQQLEIDAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg--~~las~~~d~~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~v~~s~d~~~l 450 (1086)
..+|.+.|..+.-++-| .+.|+=+..|.|+||++... ...+.+.++.+|...=..++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 44677788887777744 55666688899999998531 223456678899999999999993322
Q ss_pred EEEEEeCCCcEEEEeCCCCcee---EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCc
Q 001396 451 SVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLG 525 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~ 525 (1086)
.|+||.--+.|++|...+|.-. ..|.+|...|..++|+|..++ .|++||-||+|+|||++.+.. ....+.|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 4888888889999999888654 467789999999999998764 999999999999999998732 3344788889
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEc
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 601 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~ 601 (1086)
|+.+.|+.+-.+|++|+. +|.+.|||++. ++++..|+.|. .+|+++.|+|... .|++++.|..|.+||+
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk---~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHK---APITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEecc---CCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 999999999888888875 78899999985 56778888887 9999999999754 5666889999999998
Q ss_pred CCCee----------------EEEEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEE
Q 001396 602 NKVQL----------------LTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKIL 643 (1086)
Q Consensus 602 ~~~~~----------------~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw 643 (1086)
....- .+.+-.|.+...+..+.|+++ ..++++.+.|| +.||
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 63211 112233444566888999985 34666766676 4444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=159.62 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=148.3
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEEc-cCceEEEE---E----cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 799 VPCFALSKNDAYLFSASGGVISLYIV-MTFKTILT---I----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~dg~i~iwd~-~~~~~~~~---~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
..+++|+|||..|.+|....|+++|+ ..|+.-.. + .+..+-|.|++|+|.+.+.+|+|+...++-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 45899999999999999999999999 44432211 1 1235678999999988889999999999999999999
Q ss_pred eeEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-
Q 001396 871 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 948 (1086)
Q Consensus 871 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~- 948 (1086)
.++..+-+|.+.|+.+.|.+||+.|.+|++ |-.|..||+..... .+-.+..|......-......|+|++|++|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999875 66799999986432 222233333211112234457899999996
Q ss_pred eCCeEEEEEcCC-ccceeccccCCccCEEEEEEeCCCCEEEEEECC
Q 001396 949 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 949 ~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
.+|.|++||+++ |..+.. +..|..-+..+.+.|-=..++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 665554 55688999999999987778877654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=158.06 Aligned_cols=337 Identities=12% Similarity=0.165 Sum_probs=224.4
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCeeE
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~ 607 (1086)
.+|||+|++++++. +-.+.+-|..+-+..+.+... ..|..+.|..|.-++++ ...++.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 68999999999997 446888888887776666553 47888999999888887 467889999999988877
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
..+... ..++..++|||||+.+...+ -+-.|.+|.+.+........
T Consensus 85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------- 131 (447)
T KOG4497|consen 85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------- 131 (447)
T ss_pred EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence 777643 45689999999997766554 47889999988654332111
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
....+..++|.+||++.+..+.....-...+.
T Consensus 132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-------- 163 (447)
T KOG4497|consen 132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-------- 163 (447)
T ss_pred ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence 11223566777777766555442110000000
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEE
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL 843 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l 843 (1086)
..+-|.+... +.+ ..-..+.+.++|||..+|+-. +-+|..|.. .-.+..+
T Consensus 164 ------~c~~W~ll~~-----f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v 216 (447)
T KOG4497|consen 164 ------SCKAWILLKE-----FKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV 216 (447)
T ss_pred ------hhHHHHHHHh-----cCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence 0111211111 111 233456788888888887764 233433332 2356678
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------------------------------------------
Q 001396 844 AFNPHDNNVIAIGMDDSTILIYNARSSEV--------------------------------------------------- 872 (1086)
Q Consensus 844 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------------------------------------------------- 872 (1086)
+|+| .+++|++|+.|+.+++.+--+-+.
T Consensus 217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 8888 888888888888887754322111
Q ss_pred ---------EEEec------cccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeeeeeeccCCCccCCCCceE
Q 001396 873 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 873 ---------~~~l~------~h~~~v~~l~~spdg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
+..++ ...-.+.-++||+|..+++|-.+ -..+.+||+...+... .+... .+|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-----vLiQk----~pira 366 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-----VLIQK----HPIRA 366 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-----hhhhc----cceeE
Confidence 11111 11124667999999999998653 3569999998744221 11111 25899
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
..|.|....|++ ....++++|......++..... .-.|..++|.-+|..++-.+.|-
T Consensus 367 f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCc
Confidence 999999988888 4666799999987666665433 58899999999999999998885
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=177.44 Aligned_cols=302 Identities=16% Similarity=0.221 Sum_probs=235.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.+++....+ ..||...|..-.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF 193 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF 193 (559)
T ss_pred hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence 44566889999999999999998 6999999999999999998877541 5689999999889
Q ss_pred CC--CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 399 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 399 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
-| +.+.|++++.||.+++=.+.....+.....+..|.++|.-++.-|+... -|.+++.|+.+.-.|+.++.+...+.
T Consensus 194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence 88 4678999999999999887654444434457789999999999999887 79999999999999998877654432
Q ss_pred ---cCCc---ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee------EEe------cCCCCceEEEEEecCCCEE
Q 001396 477 ---GHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 477 ---~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~d~~~l 538 (1086)
.+.. ...+++..|. +...+++++.|..+++||.+..... ..+ ....-.|++++|+.++.-|
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 2223 4567777665 3458999999999999998653322 111 1223369999999777666
Q ss_pred EEEeeCCCCceeEEEEeCCCC------------eee-eEEecccccCCceEEEE-EecCCCEEEEEECCCcEEEEEcCCC
Q 001396 539 FSCGTSKEGESFLVEWNESEG------------AIK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~------------~~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
++... +-.|+++....+ ..+ +.++||... ..|..+- |.|...++++|+..|.|.||+-.++
T Consensus 352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence 65554 556888854322 122 337888733 2366664 5788999999999999999999999
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 605 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 605 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+.+..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99999987766 5899999999999999999999999987544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=162.95 Aligned_cols=237 Identities=14% Similarity=0.206 Sum_probs=182.0
Q ss_pred CCCEEEEE---eCCCEEEEEEe-cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-------
Q 001396 401 DGSLLGVA---YSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------- 469 (1086)
Q Consensus 401 dg~~las~---~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~------- 469 (1086)
+.++||.. +..|...+--+ ++|+.-...-.+.||+++|..++|+|-+.. .++|||.|.+|.||++..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45666654 22333333332 234433333346799999999999998877 8999999999999998754
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
+++..+.+|...|..++|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||.++++.+. |.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34678899999999999998854 589999999999999999999999887 8999999999999999999987 66
Q ss_pred eEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee---EEEEcCCCCCCCCceE
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL---LTTIDAGGGLPENPRI 622 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v 622 (1086)
.|++||.++++.+..-.+|. ...-..+.|-.++. +++.+ .+..+-+||..+-+. ...+.. ...|.--
T Consensus 196 kvRv~dpr~~~~v~e~~~he--G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~P 269 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHE--GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLP 269 (472)
T ss_pred eeEEEcCCCCcEeeeccccc--CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc---CCceEEe
Confidence 79999999999998887777 33445566777888 55543 678899999876433 233332 2346666
Q ss_pred EEecCCCEEEEEE-CCCcEEEEECCCCCe
Q 001396 623 CFNKNGTLLAVIA-NENRIKILETPESNS 650 (1086)
Q Consensus 623 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~~ 650 (1086)
-|.+|.+.++.++ .|+.|+.|.+.+..+
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6788888776554 599999999987754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=195.64 Aligned_cols=250 Identities=14% Similarity=0.156 Sum_probs=198.7
Q ss_pred CceEeeecCCCce---EEEEEeccCcEEEEecCCC---ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 330 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 330 ~V~~~~~spdg~~---lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
....++|++.|.. +||.|..||.|.+||...- ..... ......|.+.|..+.|++.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG 129 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence 6778999888775 6999999999999998652 11110 011567999999999999766
Q ss_pred -EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc--
Q 001396 404 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-- 480 (1086)
Q Consensus 404 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-- 480 (1086)
+||+|+.||.|.|||+..-+..-... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998744322111 1124568999999987776 799999999999999999988877766655
Q ss_pred ceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCce-eEEecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+..+.|+|+... .+++++.|. .|.+||++.... ..++..|...|.++.|++.+ ++|++++. |+.|.+|+
T Consensus 208 ~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN 282 (1049)
T KOG0307|consen 208 HCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWN 282 (1049)
T ss_pred ceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEec
Confidence 4678899987554 555555443 599999987554 45678999999999999976 77888876 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCCe
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 605 (1086)
.++++.+..+.... +.+..+.|+|... .+++++-||.|.|+.+....
T Consensus 283 ~~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 283 PNTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999998755 8999999999887 66678999999999987654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-18 Score=159.71 Aligned_cols=254 Identities=19% Similarity=0.218 Sum_probs=195.5
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeec-CCCccEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR 395 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~ 395 (1086)
|......|.+|.+.|+++.|-.+++ |.+|..-|.|++|++.+...+.. +. .|...|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~ 61 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN 61 (323)
T ss_pred CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence 4556677889999999999999995 78899999999999998876643 33 36678888
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccc------------------------cceEe--------------------
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR------------------------QQLEI-------------------- 431 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~------------------------~~~~~-------------------- 431 (1086)
+.--|+ ..|.+-+.|+.+.+|++..+.-+. +....
T Consensus 62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred eeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 888887 556677799999999987622110 00000
Q ss_pred ------ccccccEeEEEe-cCCCCcEEEEEEeCCCcEEEEeCCCCc----------eeEEeecCCcceEEEeecccCCcc
Q 001396 432 ------DAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS----------RTYSFEGHGAPVYSLCPHAKENIH 494 (1086)
Q Consensus 432 ------~~h~~~v~~v~~-s~d~~~l~l~s~~~d~~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~ 494 (1086)
.+..+.+.+..+ ..++.+++++.|..+|.+.+||+.++. .......|.++|.++.+.+.-+
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-- 218 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-- 218 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--
Confidence 011234444443 234666788999999999999999983 3344556999999998865433
Q ss_pred EEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001396 495 FIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 570 (1086)
.=++|+.+..+..|+++.... .......+..+..+.+-||++.+++++. |++|++|+.++.+++..++-|.
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW----D~RiRVyswrtl~pLAVLkyHs- 293 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW----DHRIRVYSWRTLNPLAVLKYHS- 293 (323)
T ss_pred CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc----CCcEEEEEeccCCchhhhhhhh-
Confidence 346788888899998865422 2234445567888999999999999998 7789999999999999999988
Q ss_pred cCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 571 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
..|++++|+|+.+.+++++.|+.|.+|++
T Consensus 294 --agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 --AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999986
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-16 Score=159.09 Aligned_cols=497 Identities=13% Similarity=0.169 Sum_probs=285.2
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE--CCCCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS 403 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~ 403 (1086)
.|+.-|.|+.|+.+.. ++.+ +.|..+.+|.-.+..........- ..++. .-| +....- -....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p~-------df~pt---~~h---~~~rs~~~g~~~d 76 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLPD-------DFVPT---DMH---LGGRSSGGGKGSD 76 (737)
T ss_pred ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCCc-------ccCCc---ccc---ccccccCCCCCcc
Confidence 5677788999999886 4554 455666655543332221111100 00000 001 000000 01235
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
.++.++.||.+.|.+-.. +.-+ ....|.+.|.+-.|+|||. -|++++.||.|++|. ++|-...++.....+|+
T Consensus 77 ~~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 788888999988887443 2222 5679999999999999999 799999999999999 78877667766788999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
|++|.|+.+ ..+++.+ +.+.+=-+.....+..+..|.+-|.++.|++..+.+++++. |....+||.. |..+.
T Consensus 150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF 221 (737)
T ss_pred EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence 999987654 3455444 44555555666777888999999999999999999999986 8889999965 45555
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.-..|. .+|++++|+|+ +.++.++. ++++ +.. .....|..++||+||..+++|+..|.+.+=
T Consensus 222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 555555 89999999999 55555553 2333 221 123458999999999999999999887653
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
..-..+... +..-++......|.+-|+.. ..+..+.+|
T Consensus 284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~p 321 (737)
T KOG1524|consen 284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEFP 321 (737)
T ss_pred eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhCc
Confidence 322211110 01111111122233333221 111222222
Q ss_pred CcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE
Q 001396 724 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 803 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~ 803 (1086)
. ++.... -.-..|++++.. .+++|.-..- .++.+.|...+ .+.-+.
T Consensus 322 ~-----rv~k~s--L~Y~hLvvaTs~-qvyiys~knw-----------ntpiiidgre~---------------tr~lie 367 (737)
T KOG1524|consen 322 Q-----RVVKFS--LGYGHLVVATSL-QVYIYSEKNW-----------NTPIIIDGRED---------------TRNLIE 367 (737)
T ss_pred c-----ceeeee--eceeEEEEEecc-EEEEEecCCc-----------cCcEEEecccc---------------chhHhh
Confidence 2 333333 222334444333 4444431100 01111111111 110000
Q ss_pred eecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCC---e--EEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCceeEE-
Q 001396 804 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT---A--TSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS- 874 (1086)
Q Consensus 804 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i--~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~- 874 (1086)
. ..+++......+|.+|..+ |+.....+.+... . ..+... ...|+.- .....+.++|. .+|+...
T Consensus 368 q--~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgD 441 (737)
T KOG1524|consen 368 Q--GEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGD 441 (737)
T ss_pred h--hhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCC
Confidence 0 1122333333557777654 3332222211111 1 223332 2344442 23346788998 7776542
Q ss_pred -EeccccCCeEEEEEe----CCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe
Q 001396 875 -KLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 949 (1086)
Q Consensus 875 -~l~~h~~~v~~l~~s----pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 949 (1086)
.+-.|...|..++.. ++.+.++.....+.+.|=.+++-... .+.++. ...|..++|+...+.|.--.
T Consensus 442 gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~Ki-------GTmVhtLawndttNiLcglq 513 (737)
T KOG1524|consen 442 GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYKI-------GTMVHTLAWNDTTNILCGLQ 513 (737)
T ss_pred ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhhh-------hhhhhhhhhccccceeeeec
Confidence 222366677766665 35577788888888887776642111 111111 13578899999888887789
Q ss_pred CCeEEEEEcCC
Q 001396 950 ETHLAIYEAEE 960 (1086)
Q Consensus 950 d~~i~vwd~~~ 960 (1086)
|+.+.||=...
T Consensus 514 Dt~fsVWy~pn 524 (737)
T KOG1524|consen 514 DTCFSVWYYPN 524 (737)
T ss_pred cceEEEEEcCC
Confidence 99999998764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=176.38 Aligned_cols=262 Identities=15% Similarity=0.196 Sum_probs=197.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEec-----CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
.+..|...|++++|.|-...|++++.||++.+|+++ ....+.++.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 367799999999999999999999999999999993 2344667788999999999999999999 899999999
Q ss_pred cEEEEeCCC------C----ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC--CceE
Q 001396 460 TIKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCT 527 (1086)
Q Consensus 460 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~i~ 527 (1086)
+|+.|++.. . .....+.||.+.|+.++++..++ .|++++.||+++.|+...... .++.... +--.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996541 1 23357789999999999977664 799999999999998766555 3333222 2233
Q ss_pred EEEEecCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc----ccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 528 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 528 ~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++.+.... ..+++... .+.-.+++...+..+..+.... .....+..+.++|.+...+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 11222111 2223334444444444443221 112457788999999999999999999999999
Q ss_pred CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccc
Q 001396 603 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 603 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
+++++.....+ ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999888766 446899999999999999999999999999877666554433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-16 Score=145.29 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=193.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCC---ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
.|.+-++||.+++ |+.|..+|+|.+..+.+- +.....+ .+.....+|.++|+.++|. ..+|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk------------~~iv~eqahdgpiy~~~f~--d~~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGK------------LKIVPEQAHDGPIYYLAFH--DDFLL 76 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccCCCCC------------cceeeccccCCCeeeeeee--hhhee
Confidence 6777899999985 899999999999998641 1111000 1111246899999999998 45677
Q ss_pred EEeCCCEEEEEEecCCCc---cccceE--ecccc-----ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 407 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+|+ ||.|+=|....... .+...+ ...|. -.|+++...|..+ -++.++.|+.++-||+++|+..++++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence 775 59999998865332 111111 11233 2588999998877 45566679999999999999999999
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC----------ceEEEEEecCCCEEEEEeeCCC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
||++.|.++.-. +....+++|++||++|+||.++.+.+..+..-.. .| .+..-+..++++|+.
T Consensus 154 GHtDYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG--- 226 (325)
T KOG0649|consen 154 GHTDYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG--- 226 (325)
T ss_pred CCcceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC---
Confidence 999999999863 2334799999999999999999998776543221 34 444566778988863
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
..+.+|+++..++...+.-. ..+..+.|.. +.++++++.+.|.-|.+. |.+....+...+ ...+..++.
T Consensus 227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~ 295 (325)
T KOG0649|consen 227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT 295 (325)
T ss_pred --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence 35999999999998888764 4788888865 478888888889999874 444444443322 234444433
Q ss_pred C-CCEEEEEECCCcEEEE
Q 001396 627 N-GTLLAVIANENRIKIL 643 (1086)
Q Consensus 627 ~-~~~l~~~~~dg~i~iw 643 (1086)
. -+++-.++....+.++
T Consensus 296 ~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 296 SPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEEecccceeeeee
Confidence 2 2344444555555554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=151.67 Aligned_cols=259 Identities=18% Similarity=0.236 Sum_probs=185.6
Q ss_pred eeccCCCCceEeeecCCCceEEEEEecc-------CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
+|.-|.++|+.++-+|-.+++|++...+ -.+.||.+....... +...|+ ....+-..+-+.|.|
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~c 128 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINC 128 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceee
Confidence 4567888999999999988899987653 236788775432210 000000 000111245569999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccce---EeccccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
+.|.|++..||+-. |..|.+|+++.+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.+
T Consensus 129 vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 129 VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMK 204 (370)
T ss_pred EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchh
Confidence 99999999999885 7779999999876532111 1123566788999999 566 455554 8999999999988
Q ss_pred eeEEe-ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc-eeEEecCCCCceEEEEEecCCCEE-EEEeeCCCC
Q 001396 471 RTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEG 547 (1086)
Q Consensus 471 ~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~ 547 (1086)
+...+ ..|...|..+.|+|+.. .+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..| ++++.
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---- 279 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---- 279 (370)
T ss_pred hhcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----
Confidence 87666 46889999999987643 689999999999999998765 466888999999999999965554 45543
Q ss_pred ceeEEEEeCCCCe-----------------------------eeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEE
Q 001396 548 ESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIK 597 (1086)
Q Consensus 548 ~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~ 597 (1086)
|..|.+|...+-. .+.++..|. ..|++++|+....++++ -+.||.+.
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence 6667777543211 123444444 89999999988887755 78999988
Q ss_pred EEEcC
Q 001396 598 IWDMN 602 (1086)
Q Consensus 598 iwd~~ 602 (1086)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 76554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=158.18 Aligned_cols=302 Identities=12% Similarity=0.110 Sum_probs=214.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeee-eeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
|.+-+.+|.+-|.++.||.+|+ +||+|+.|..+++|++..--..++ +++. ..-..|...|.|++|
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence 4455789999999999999998 699999999999999864322111 1111 113456789999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-ee--EEe
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~--~~~ 475 (1086)
....++|.+|..+++|..-|+++.+.+... .-....+.|..+..+|..+ .+++.+.++.|.+||..... .. ..+
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence 999999999999999999999998765421 1112334899999999987 79999999999999987654 22 223
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-------ecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
........++-|+|. ...+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-. .
T Consensus 191 AN~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~ 265 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G 265 (609)
T ss_pred cCCCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence 334456677778765 346889999999999999886554321 1112223467899999999988654 2
Q ss_pred eeEEEEeCCCCeeeeEEecccc----cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--------------------
Q 001396 549 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------- 604 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------- 604 (1086)
..-.+||+-+.++...-..|.. ....+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 2345677766443221112221 11346778887664 4899999999999987531
Q ss_pred ---eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 605 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 605 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+..+.+| ...++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 122344444 4457899999999999999999999999754
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-17 Score=152.63 Aligned_cols=308 Identities=16% Similarity=0.188 Sum_probs=200.1
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
...+++|. ..++++.|..++ +|++|..-|.|.+|++.+......+..++. ..|..+..-|+ ..+.+-+.|+.+.
T Consensus 7 ~fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEE
Confidence 34455666 889999998876 599999999999999999988888875543 34777777776 5688889999999
Q ss_pred EEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccc
Q 001396 642 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 721 (1086)
Q Consensus 642 iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 721 (1086)
+|++.....+.. |+-.++++.|.+..-.. ...+....++.-+. +.-.+-..+.+.+.+.....
T Consensus 81 lw~ia~s~~i~i---~Si~~nslgFCrfSl~~-------------~~k~~eqll~yp~r-gsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 81 LWTIAYSAFISI---HSIVVNSLGFCRFSLVK-------------KPKNSEQLLEYPSR-GSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred EEEccCcceEEE---eeeeccccccccceecc-------------CCCcchhheecCCc-ccchhhhhccCccceeEccC
Confidence 999987544332 22334444444322111 00011111111111 11001111111222222222
Q ss_pred cCCcccccceEEEEEe-cCCc--eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCC
Q 001396 722 LPSKVKANKISRLTYN-NGGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798 (1086)
Q Consensus 722 ~~~~~~~~~i~~l~~s-~~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 798 (1086)
-+.....+.+.+..+. .++. .+++|..+|.+.+||+..+..... -...|... .....|..+
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-------~~~~~kv~---------~~~ash~qp 207 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-------LPQSSKVE---------SPNASHKQP 207 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-------cccccccc---------cchhhccCc
Confidence 2223345566665532 2233 345667789999999887522100 01112111 112248899
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEEccC--ceE--EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 799 VPCFALSKNDAYLFSAS-GGVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
|.++.+.+.-..=++++ +..+..|+++. +.+ .....-.+..|..+.+-| |++++|+++.|+.|+||+.++.+++
T Consensus 208 vlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322|consen 208 VLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred ceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch
Confidence 99999987655445555 56788887763 322 222333456788899999 9999999999999999999999999
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 909 (1086)
..++-|.+.|.+++|+||...+|.+|.|++|.+|++
T Consensus 287 AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999986
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-18 Score=183.09 Aligned_cols=288 Identities=14% Similarity=0.227 Sum_probs=226.7
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
+.++.+.+|. ..|+|+.|...|.++++|+.|..++||.++++.++....+|.+ .+..++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 4455666776 8999999999999999999999999999999999999987754 6899999999999999999999
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCC-cccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP-SECQ 718 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~-~~~~ 718 (1086)
|++|.+.++.++..+++|.+.|++++|+|.. +.+.||++++||...... ....
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCC
Confidence 9999999999999999999999999998742 567789999999761100 0001
Q ss_pred ccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCC
Q 001396 719 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798 (1086)
Q Consensus 719 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 798 (1086)
+.. ......+.++.|...+..+++++.++.-..|.+..-. | +...
T Consensus 310 p~~---~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~ 354 (1113)
T KOG0644|consen 310 PLK---FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNL 354 (1113)
T ss_pred CCC---cccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccc
Confidence 111 1123557778888899999999999888887654321 1 2222
Q ss_pred eeEEEeecCC-CEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 799 VPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 799 v~~l~~s~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
+.-+.++.|- .+.+++- +-.+.+|++.+|...+.+.+|..++..+.++|.+.+...+++.||...|||+..|..++..
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 2222333332 2333443 6779999999999999999999999999999988888889999999999999998777654
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
..-.+.+..-+||+||..++....-|.+.|.....++
T Consensus 435 ~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 435 FIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 4324457778999999999988888999998776544
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-16 Score=148.03 Aligned_cols=289 Identities=18% Similarity=0.261 Sum_probs=205.4
Q ss_pred eeeeccCCCCceEeeec--CCCceEEEEEec----cCcEEEEec--CCCceeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 321 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~s--pdg~~lla~gs~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
+..+..+- .+.++.|| |+.++-||.||. .+.|.|-.+ .+++.+...+ ..|.-+
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 34444444 78888998 566667999985 244555433 4444443221 258899
Q ss_pred EEEEEECCCCC-----EEEEEeCCCEEEEEEecCCC-ccccceE-----eccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 393 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGS-DARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 393 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~-----~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
++.+-|.||.+ +||+++ | .+++|.+...+ .+..... -..+..++++..|+.-... ++.++|-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999873 566653 3 49999997422 1111111 2246679999999887666 79999999999
Q ss_pred EEEeCCCCce---eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCC--CCceEEEEEec-C
Q 001396 462 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSA-N 534 (1086)
Q Consensus 462 ~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~-d 534 (1086)
.|||+++|.. ...+-.|...|..++|.. .....+++.+.||.+|+||++..+.-. .+... ..+...++|++ |
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999743 456778999999999975 345689999999999999999876533 33332 34778888887 4
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCee------
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------ 606 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------ 606 (1086)
-+++++...+ ...|.+.|++. ..++..+++|. +.|+.++|.|.. ..|.+++.|..+.+||+...-.
T Consensus 255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 5666665543 34588999885 46778888888 999999999974 5788899999999999976332
Q ss_pred EEEEcCCCCCCCCceEEEec-CCCEEEEEECCCcEEE
Q 001396 607 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKI 642 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 642 (1086)
+.... ...+|+.+.|++ .+..++++.. +.+.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 11222 234689999996 5667777764 34444
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=170.65 Aligned_cols=270 Identities=14% Similarity=0.191 Sum_probs=192.9
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..+|.-|.+.|+.++|.|... .|++++.||++.+|+++....-... ..-+...+.+|.++|-|+++++
T Consensus 287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecC
Confidence 347889999999999999987 5999999999999999431111100 0112223889999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCc-------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+++.+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||+++.|+.....+ .
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence 999999999999999996642211 112235779999999999999888 799999999999999766555 4
Q ss_pred EeecCC--cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------CCceEEEEEecCCCEEEEEeeC
Q 001396 474 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 474 ~~~~h~--~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+|.... +.-.++.+..+ +-...++...-+.--+.++........+... ...+..+...|.+...+++..
T Consensus 432 ~f~~~~e~g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred ccCCccccCCcceEeeccc-hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence 443222 22233443211 1012222222222223333333333332211 124667888888888888875
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
++.|+++|..++.++.....|. ..+.++++.|+|.+|++++.|+.+++|.+....+......+
T Consensus 510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 7789999999999999998887 89999999999999999999999999999877666555433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=156.44 Aligned_cols=294 Identities=11% Similarity=0.077 Sum_probs=211.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc---cccceEe-ccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~-~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|.+.|.++.||.++++||+|+.|..+++|+++..-. .+.+... ..|...|.|++|...++ ++++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 678999999999999999999999999999999864211 1222111 24567999999998877 89999999999
Q ss_pred EEEeCCCCceeEEeec--CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCC
Q 001396 462 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~ 536 (1086)
...|+++.+.+..+.. ..+.|+.+..+|.. ..|++.+.+|.|.+||.+.... .+.....+.....+.|+|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999888752 23489999988773 5899999999999999987652 333444555788899999877
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCee-eeE---EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
.|+...... +-+.+||.+.... +.. +.+.+.....-.++.|+|+|+++++.-....-.+||+.+..+...-..
T Consensus 208 ~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 666554433 3378999875432 111 222221112335678999999999877666677888877544322222
Q ss_pred CC-----CCCCCceEEEecCCCEEEEEECCCcEEEEECCCC-----------------------Ceeeeccccccceeee
Q 001396 613 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 664 (1086)
Q Consensus 613 ~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~~ 664 (1086)
|. ....+.+++|..|- -+++|+++-.|++|.+... ..+..+++|...++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 12245667777654 4999999999999998732 2344566666666666
Q ss_pred EEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeee
Q 001396 665 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 709 (1086)
Q Consensus 665 ~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~ 709 (1086)
.|+ |...++++.+-++.+++|..
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 665 56777888888899999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=140.22 Aligned_cols=286 Identities=13% Similarity=0.141 Sum_probs=196.2
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.+. ..|+..+ .+..+|+.++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~----------~~gk~~i---v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE----------PPGKLKI---VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC----------CCCCcce---eeccccCCCeeeeeee--hh
Confidence 355567899999999999999999998764311 1110 1111111 1123699999999998 56
Q ss_pred EEEEEeCCeEEEEEccCceE------EEEEc-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 810 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
+|.+++||.|+=|....... +.... ..-..|+++-..|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 78889999999998753221 11111 12357899999985555555 557999999999999999999
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC----CCCceEEEEecCCCEEEEEeCCe
Q 001396 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL----APSETHIQFHKDQTRFLLVHETH 952 (1086)
Q Consensus 877 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~dg~~l~~~~d~~ 952 (1086)
+||++.|.+++--.....++||++||+++|||.++++... .+...+..... ..+| .+..-+..+|++|....
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 9999999999985555678899999999999999966433 22222221111 1223 45556778999988889
Q ss_pred EEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEE
Q 001396 953 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1032 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1086)
+.+|.+.+.++...+.. ..++..+.|-.| .++++|.-+.|.-|.+. |.+.+.+. .. ....+..+...
T Consensus 229 lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~ 295 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT 295 (325)
T ss_pred eeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence 99999999998876543 667888888654 57778888899999886 44443333 11 11122233344
Q ss_pred CCCCCCEEEEEeCCCcEEEEc
Q 001396 1033 HPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 1033 ~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
+| -..+-.++..+.+.++.
T Consensus 296 ~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 296 SP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred Cc--eEEEEecccceeeeeee
Confidence 45 35677777788887763
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=156.54 Aligned_cols=293 Identities=13% Similarity=0.170 Sum_probs=202.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--CCC-CceE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT 527 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~-~~i~ 527 (1086)
.++++-..|+|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6777778999999999999999999999999999999765566789999999999999999877655433 333 3566
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee-eeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCe
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+++..-.++.++++..-...+..|.+||.+..+. ++.+... |...|++++|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--ccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 6666667888888876556688999999998765 5554432 24899999999975 678899999999999997542
Q ss_pred ----eEEEEcCCCCCCCCceEEEecCC-CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 606 ----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 606 ----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
++.++. ....|..+.|..++ +.+.+-+..++..+|+++.+.+...+......... . ..-...
T Consensus 200 EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d--~--------r~~~~~ 266 (376)
T KOG1188|consen 200 EEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD--L--------RKEDNC 266 (376)
T ss_pred chhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh--H--------Hhhhhh
Confidence 223332 22458889999877 45888888999999999988654433321110000 0 000000
Q ss_pred eeeecCCCCCCcccceec-cccCccceeeeeecCC-ccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 681 SVSVNEDPKEDVKPEISV-EAENKSEVEKPLFARP-SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~-~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
...++.....++...+.+ ...+...++-+....+ ...........+|..-|+++.|...+..+.+|+.||.+.+|..+
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 011111111233333333 3356666666543222 22233334445577788899999899999999999999999853
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=153.89 Aligned_cols=277 Identities=15% Similarity=0.173 Sum_probs=193.2
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CCCEEEEEeCCCEEEEEEec
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH 420 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~ 420 (1086)
.+|++-..|+|++||..+|+.+.. +++|...+..++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 578888889999999999988865 667888888899977 46788999999999999999
Q ss_pred CCCccccceEecccc-ccEeEEEecCCCCcEEEEEEe----CCCcEEEEeCCCCce-eEEe-ecCCcceEEEeecccCCc
Q 001396 421 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI 493 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 493 (1086)
+......+ .+.+|. .+..+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence 87655433 345665 4666676665566 666664 466799999998766 5443 679999999999987 55
Q ss_pred cEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 494 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
.+|++||.||.|.++|+..... +.....+...|..+.|..++ +.+.+.+- .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 7999999999999999876532 22334456679999999988 23444443 4468999999887655544331
Q ss_pred cc---------CCceEEEEEecCCCEEEE-EECCCcEEEEEcC---CCee---EEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 570 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 570 ~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
.. ...+.......+....+. ++..+...++-+. ++.. +..+.+ ++..-|+++.|...+..+.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 011111111223334444 3335565555443 3333 333333 23445788889888999999
Q ss_pred EECCCcEEEEECCC
Q 001396 634 IANENRIKILETPE 647 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~ 647 (1086)
|+.||.+.+|..+.
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999999643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=161.90 Aligned_cols=245 Identities=17% Similarity=0.161 Sum_probs=163.5
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEEeecccCCccEEEEEEcCCeEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 508 (1086)
++.||++.|++++|+.||. +|++|++|-.+.|||.-..++++.+ .+|.+.|.++.|.|..+...+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 9999999999999999988888777 689999999999999999999999999999999
Q ss_pred EcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC-CEE
Q 001396 509 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 587 (1086)
Q Consensus 509 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 587 (1086)
|+...+.... + + ...+..+.+..|. ..|..++-.|++ +.+
T Consensus 123 dl~~~~~~~~-------------------------d---~--------~~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGGM-------------------------D---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred eccccccccc-------------------------c---c--------Cccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 9875322110 0 0 0011222333444 678888888888 678
Q ss_pred EEEECCCcEEEEEcCCCeeEE-E-------EcCCCCCCCCceEEEec-CCCEEEEEECCCcEEEEECCCC-Ceeeecc--
Q 001396 588 LAAGDDHVIKIWDMNKVQLLT-T-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-- 655 (1086)
Q Consensus 588 ~~~s~dg~i~iwd~~~~~~~~-~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~-- 655 (1086)
.++++||+|+-+|++....-. . .......-...++..+| +..+|++|+.|--.++||.... +....-.
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence 889999999999998632110 0 01111122456889999 5678999999999999994321 1111100
Q ss_pred --ccccceeeeEE-ccCCCceecc------ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 656 --VLSDNLRKLSV-NPISTVTGAG------IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 656 --~~~~~v~~~~~-~p~~~~~~~~------~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
.......|+.+ +|.......+ .....++| +|+|.-++..-....|.++++...+......
T Consensus 244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 11111222322 2222101111 11123445 6888777776666778888887655444333
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-14 Score=159.75 Aligned_cols=275 Identities=14% Similarity=0.193 Sum_probs=178.7
Q ss_pred eEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe-CCCEEEEEEe
Q 001396 342 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY 419 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~ 419 (1086)
++.++...++.|.+||+.+ |+...... + .+.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 4455667789999999974 33222111 1 1335677899999999987764 5778999999
Q ss_pred cCCCccccceEeccccccEeEEEecCCCCcEEEEEE-eCCCcEEEEeCCC-Cc---eeEEeecCCcceEEEeecccCCcc
Q 001396 420 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH 494 (1086)
Q Consensus 420 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~-~~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~~ 494 (1086)
.....+...... ...+....++|+|+++. ++++ ..++.|.+|++++ +. .+..+.+ ......++++ ++++
T Consensus 65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~ 138 (330)
T PRK11028 65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR 138 (330)
T ss_pred CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence 732222211111 22335678999999994 4444 4588999999864 32 2233322 2345566674 4666
Q ss_pred EEE-EEEcCCeEEEEEcCCCceeEE------ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC--Ce--eee
Q 001396 495 FIF-SISVDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR 563 (1086)
Q Consensus 495 ~l~-s~s~dg~i~vwd~~~~~~~~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~ 563 (1086)
+++ +...++.|.+||+++...... ....+.....++|+|+|++++++.. .++.|.+|++.. ++ .+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 455679999999986432211 1122345678999999999988763 366899999873 32 333
Q ss_pred EEecccc---cCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 564 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 564 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
.+..... +......+.++|++++++++. .++.|.+|++.... .+...... .....++++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332210 112234688999999999985 47899999986432 22222221 2356899999999999887
Q ss_pred C-CCcEEEEECC
Q 001396 636 N-ENRIKILETP 646 (1086)
Q Consensus 636 ~-dg~i~iw~~~ 646 (1086)
. +++|.+|+++
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 6 8999999875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-14 Score=143.94 Aligned_cols=241 Identities=11% Similarity=0.145 Sum_probs=186.9
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
..+..+.|+.|...|..|+.|| -++|+.+.-.... ........|.-+-|+.. .+.+|+...-+.+++.+.+.+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 4567777999999999999999 7888887644311 11122334666667653 2234444333459999999888
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC---CCceEEEEEecCCCEEEEEeeCCCC
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+..+. ...+|.++.++ .+.|+++=.+. |.|||+++.+...++... ...+.++++++.+.+++.-+.. .
T Consensus 80 ~ICe~~-fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--t 151 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--T 151 (391)
T ss_pred eEEEEe-cCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--C
Confidence 888775 56678888873 34677766655 999999999988866544 3356666666677788875432 2
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc-EEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
.|.|++||..+-+.+..+..|. +.+.+++|+++|.+|+++|+.|+ |||+.+.+|+.+..+.-......|.+++|+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 6679999999999999999888 99999999999999999999998 6999999999999998665556788999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 001396 627 NGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
++++|++.++.++|+++.++..
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999998864
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-15 Score=147.26 Aligned_cols=241 Identities=11% Similarity=0.171 Sum_probs=184.7
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeE
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 873 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 873 (1086)
...+..+.|..|...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677799999999999876678888876555333333445677778876 3676666553 5999999988877
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-E--eC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 950 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~d 950 (1086)
..+. ...+|.++.+. .+.|+++=.+. |+|||++.-+ .+.+..........+.++++++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 45678888886 55666665554 9999999843 44444443222234666777777789998 3 56
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCc-EEEEEcCCCceeeeeccccccCCCCccCcccceE
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1029 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1086)
|.|.|||+.+-+.+.. +..|.+.+.+++|++||.+|||++..|+ |||+.+.+|+.+.+|+.+.. .+...+
T Consensus 153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 8899999998888876 5589999999999999999999999997 89999999999999985443 234568
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1030 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1030 ~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
++|+| ++++|++.+..++|+++.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 99999 78999999999999999996544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=144.79 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=129.6
Q ss_pred eeEEEeec--CCCEEEEEeCCeEEEEEccCceEEEEEc-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEE
Q 001396 799 VPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 874 (1086)
Q Consensus 799 v~~l~~s~--dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 874 (1086)
.++-+||| ||..+++.+|++++.||+.+.+....+. .|...|..+.|+|+-..+||+|+.||.|+|||.+. ..++.
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 33445665 8899999999999999999888777665 48888999999996677899999999999999975 46789
Q ss_pred EeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCe
Q 001396 875 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH 952 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 952 (1086)
.+.+|...|+++.|+|- .++++++|.|..|.+|...+-.... + +.|-.|..-.-. -...+
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~----q--------------i~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ----Q--------------IEFEDDESESEDEDSEER 314 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc----c--------------cccccccccCcchhhHHh
Confidence 99999999999999985 4778899999999999876522111 1 111111000000 00001
Q ss_pred EEEEEcCCccceeccccCCccCEEEEEEeCCCCE-EEEEECCCcEEEEEcC
Q 001396 953 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~s~~~Dg~v~vWd~~ 1002 (1086)
++ -+..|. +. .+..|...|.+++||.-..+ +|+-+.||.+.|=.++
T Consensus 315 ~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 315 VK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11 011111 11 25578999999999986654 6788999999886655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-14 Score=157.11 Aligned_cols=256 Identities=14% Similarity=0.194 Sum_probs=166.6
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecC-CCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.++++.. .+....++++||+++|++++..++.|.+|++. +|+....... ........++|
T Consensus 27 ~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------------------~~~~~p~~i~~ 87 (330)
T PRK11028 27 LLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------------------PLPGSPTHIST 87 (330)
T ss_pred eeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------------------cCCCCceEEEE
Confidence 3444442 34688899999999755555568999999996 3433211110 12235678999
Q ss_pred CCCCCEEEEEeC-CCEEEEEEecCCCcc-ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE---
Q 001396 399 SPDGSLLGVAYS-KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--- 473 (1086)
Q Consensus 399 spdg~~las~~~-d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~--- 473 (1086)
+|+|++|++++. ++.|.+|++++...+ .....+ .+......++|+|+|+. ++++...++.|.+||+.+...+.
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCcccccC
Confidence 999999988764 789999999743222 221122 22334677899999985 44666678999999997643221
Q ss_pred ----EeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCC--ce--eEEecCC------CCceEEEEEecCCCEE
Q 001396 474 ----SFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSL--GA--RVDYDAP------GLGCTRMAYSANGRRL 538 (1086)
Q Consensus 474 ----~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~--~~--~~~~~~~------~~~i~~~~~s~d~~~l 538 (1086)
... .......++|+ +++++++++.. +++|.+|+++.. .. ...+... ......+.++|+|+++
T Consensus 166 ~~~~~~~-~g~~p~~~~~~--pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 166 PAEVTTV-EGAGPRHMVFH--PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred CCceecC-CCCCCceEEEC--CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 12335667885 57788877766 999999999742 21 2222211 1123468899999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC-CCcEEEEEcC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMN 602 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~ 602 (1086)
+++.. +++.|.+|++........+.++.........+.++|+|++|+++.. +++|.+|+++
T Consensus 243 yv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDR---TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecC---CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 98743 3568999998654322222222211134567899999999998775 8999999875
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=158.32 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=163.2
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
.+++|+.||..++++. ||++|||++.+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999998888888888999999999999 99999999999 899999999977766552
Q ss_pred --ccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCceeee-eeeeccCCCccCCCCceEEEEecCCCEEEE-Ee
Q 001396 879 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH 949 (1086)
Q Consensus 879 --h~~~v~~l~~spdg-----~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 949 (1086)
.......+.|+.|+ ..++....-+.|+.|++........ +..+....+ ..|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 23346678898887 4444555567788888765442111 111222222 25999999999999999 58
Q ss_pred CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 950 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 950 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
||.|-|++..+.+++.-....|...|+.+.|+||.+++++.+.|..+.|..+..
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999888889999999999999999999999999999888765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=162.96 Aligned_cols=198 Identities=17% Similarity=0.147 Sum_probs=148.4
Q ss_pred eecCCCEEEEEe-CCeEEEEEccCceEEEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEecc
Q 001396 804 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 878 (1086)
Q Consensus 804 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 878 (1086)
|-....+|.+++ -..|+|||.........+.. ....|+++.-+...|.++++|..||.|++||.+.. ..+...+.
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 333333444444 47899999998887777654 44567888776657899999999999999998764 35677888
Q ss_pred ccCC--eEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEE
Q 001396 879 HSKR--VTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 955 (1086)
Q Consensus 879 h~~~--v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v 955 (1086)
|+.. |..+.+-+.|-- |++|+.||.|++||+..........+.... .....++++..+++...+|+|+.+.|+|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~---~yGs~lTal~VH~hapiiAsGs~q~ikI 1329 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW---EYGSALTALTVHEHAPIIASGSAQLIKI 1329 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc---ccCccceeeeeccCCCeeeecCcceEEE
Confidence 9887 999999987744 999999999999999874322222222111 1112489999999999999987799999
Q ss_pred EEcCCccceeccc------cCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 956 YEAEELTCLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 956 wd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
|++. |+.+..+. ....+.+.+++|.|---+||+|+.|.+|.||......
T Consensus 1330 y~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1330 YSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9986 44333221 1226678999999999999999999999999887654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=161.48 Aligned_cols=250 Identities=17% Similarity=0.165 Sum_probs=183.3
Q ss_pred CCccEEEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc--ccc-eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 389 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 389 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
-...|.|++|+| +..++|.|..+|+|.+||+..+... ... .....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 5677888899999999999987652 111 112368899999999765442258999999999999
Q ss_pred eCCCCce------eEEee------cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--------eEEecCCCC
Q 001396 465 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL 524 (1086)
Q Consensus 465 d~~~~~~------~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~ 524 (1086)
+++.-.. ..... .-...++++.|.+. +...++.|+.+|.|.--+....+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 12345788888765 446899999999998743322221 235667888
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEEEEEecCCCEE-EEEECCCcEEEEEcC
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 602 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~ 602 (1086)
+|+++.++|-+..++..+. |..++||... ...++..+..+. ..+.+++|||....+ +++..+|.|.+||+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 9999999998877666554 7789999987 566666666665 679999999987655 557789999999997
Q ss_pred CCee--EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 603 KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 603 ~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.... +...... ......+.|+++|+.|++|...|++.+|++...
T Consensus 473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 5443 3333333 345678888999999999999999999999743
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=166.50 Aligned_cols=235 Identities=13% Similarity=0.119 Sum_probs=162.7
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR 426 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 426 (1086)
+..|.|||....... . +..|...+.+.+|||||++||+++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998665422 1 55688899999999999999988653 479999998875322
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEE-EeCCCcEEE--EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE-cC
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD 502 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s-~~~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~d 502 (1086)
...+.+| ...++|+|||+ .|+. .+.+|.+.| ||+.++. +..+..+...+....|++ ||+.|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 2223333 44689999999 4544 446776555 4666665 455666777777888854 677666554 67
Q ss_pred CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 503 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|...+|+++..........+.. ....|+|||+.++..+. ..+.+||+.+++........ ....+.|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP 381 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP 381 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence 8889998765333222222222 45789999999988764 23777999988764333221 234678999
Q ss_pred CCCEEEEEECCCcEEEEEcC--CCeeEEEEcCCCCCCCCceEEEecC
Q 001396 583 AKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 583 ~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+|++|+.++.++.+.+|++. +|.....+..+.+ .+...+|+|-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999999999988888763 5777777765433 4678889874
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-17 Score=175.46 Aligned_cols=312 Identities=18% Similarity=0.237 Sum_probs=210.3
Q ss_pred ccCCCCC-chHHHHHHHHhHHhhhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCcc
Q 001396 156 LKFPSIK-RQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSML 234 (1086)
Q Consensus 156 ~~~~~~p-~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 234 (1086)
++.|..| +--|..|+-|++++|+.+|+++.++++++|||.+|.|++ |.+..++|-++..+.-..
T Consensus 1004 q~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~r 1068 (1516)
T KOG1832|consen 1004 QMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTR 1068 (1516)
T ss_pred cCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccch
Confidence 3333344 336999999999999999999999999999999999998 777777654433222100
Q ss_pred cCccccccccCCCCCCcccccccCCCCCcccccCCccccCCCCCCcccccCcCCCCCCCCCCCCccccccccccCCCccC
Q 001396 235 TDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 314 (1086)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~ 314 (1086)
..-+ ...++..-++ ..+.+|...
T Consensus 1069 el~~-----------------------------------~y~gV~g~~~----------------dr~~IFSRF------ 1091 (1516)
T KOG1832|consen 1069 ELQS-----------------------------------FYSGVHGNRR----------------DRQFIFSRF------ 1091 (1516)
T ss_pred hhcC-----------------------------------cccccccCcc----------------cchhhHhhc------
Confidence 0000 0000111111 122233322
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
...++++.|+...+|++||-+.+. |++|+..|.|+++++.+|..... ..+|..+|+
T Consensus 1092 ----r~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT 1147 (1516)
T KOG1832|consen 1092 ----RSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVT 1147 (1516)
T ss_pred ----ccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccc
Confidence 223567889999999999999985 99999999999999999998765 668999999
Q ss_pred EEEECCCCCEEEEEeCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 395 RVVWSPDGSLLGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
.+.-|.||..+.+.+... ...+|++.+- ....+++. .-.++.|+...+. -+.|..-..+.+||++|+..+
T Consensus 1148 ~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1148 LVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred cccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHH
Confidence 999999999887765433 5789998763 22222332 2457889877553 333443456899999999887
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
.++-.. .+. ..+ .-....|+|+.++++--+ .
T Consensus 1220 ~tylt~--~~~-~~y-------------------------------------~~n~a~FsP~D~LIlndG---------v 1250 (1516)
T KOG1832|consen 1220 QTYLTD--TVT-SSY-------------------------------------SNNLAHFSPCDTLILNDG---------V 1250 (1516)
T ss_pred HHhcCc--chh-hhh-------------------------------------hccccccCCCcceEeeCc---------e
Confidence 764211 000 000 013457888888776532 4
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+||.+..+.++.|.... ..+ .-.|+|.|..++.-++ |||+++.+++...+.-.. ..+.|+..|..++
T Consensus 1251 LWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1251 LWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMY 1317 (1516)
T ss_pred eeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchh
Confidence 79998888777776544 222 2348999999988775 999999988877664332 5678888777665
Q ss_pred E
Q 001396 633 V 633 (1086)
Q Consensus 633 ~ 633 (1086)
.
T Consensus 1318 a 1318 (1516)
T KOG1832|consen 1318 A 1318 (1516)
T ss_pred h
Confidence 4
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=161.60 Aligned_cols=256 Identities=13% Similarity=0.095 Sum_probs=183.4
Q ss_pred ecCCCccEEEEEECCCC-CEEEEEeCCCEEEEEEecCCC----ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc
Q 001396 386 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~ 460 (1086)
+..|...|..++.++.. .++++|+.||+|++|+...-. ..+...++.....++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 77799999999988755 999999999999999986422 2233334444567899999999999 6888899999
Q ss_pred EEEEeCCCC--ce-----eEEeec-CCcceEEE-eecccCCccEEEEEEcCCeEEEEEcCCCceeEE--ecCCCCceEEE
Q 001396 461 IKVWDAVTG--SR-----TYSFEG-HGAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM 529 (1086)
Q Consensus 461 i~iwd~~~~--~~-----~~~~~~-h~~~v~~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~ 529 (1086)
|++.+++.. +. .+.... ..+.+.+| ++........++.+..-+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 21 111111 22334444 333322224788899999999999988776554 34456789999
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC---CEEEEE-E-CCCcEEEEEcCCC
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---DQILAA-G-DDHVIKIWDMNKV 604 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-s-~dg~i~iwd~~~~ 604 (1086)
+.+|-+.+++.|+. .|.+.+||++=+.++....... ..++..+..+|-. ...+++ + ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999986 7789999999888887776544 3677777776643 345554 3 5788999999999
Q ss_pred eeEEEEcCCCCC-----------------CCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 605 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 605 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
.....+....+. ......++...+..+.+|+.|..|+.||.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 777766433110 111223344456689999999999999988653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=153.37 Aligned_cols=197 Identities=21% Similarity=0.208 Sum_probs=151.3
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeee
Q 001396 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 920 (1086)
Q Consensus 841 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 920 (1086)
.+++|+. +|..|++|+.||++|+|+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||++.++.... -
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence 7899999 89999999999999999999888888888899999999999999999999999 79999999973211 1
Q ss_pred eccCCCccCCCCceEEEEecCC---CE-EEE-E-eCCeEEEEEcCCccc-----eeccccCCccCEEEEEEeCCCCEEEE
Q 001396 921 QTPDGVMTLAPSETHIQFHKDQ---TR-FLL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 921 ~~~~~~~~~~~~v~~~~~s~dg---~~-l~~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~s 989 (1086)
..+.+.. .....+.|+.|+ .+ +++ . .-+.|..|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 1112222 357789999888 33 333 2 334566666543222 11111 12458999999999999999
Q ss_pred EECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 990 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 990 ~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
|+.||.|.|+++.+.+...-+. .. |. ..+..+.|+| |.+.++..+.|.+..|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk------~a-H~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK------EA-HL--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh------hh-he--eeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999887764433 21 22 3567899999 789999999999999998864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=149.74 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=199.3
Q ss_pred EEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce
Q 001396 496 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 575 (1086)
Q Consensus 496 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v 575 (1086)
+++-..++.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.+++... ..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----NP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----Cc
Confidence 355667899999999999988888776655566889999999999865 6689999999999999987643 67
Q ss_pred EEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 001396 576 SVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIAN-ENRIKILETPES 648 (1086)
Q Consensus 576 ~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~ 648 (1086)
..+++++||++++++. .++.+.++|.++.+.++.+...+ ..+.+..+..+|....+++.-. .+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 8899999999999865 78999999999999998876432 2234567777887775555544 477777776654
Q ss_pred CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccc
Q 001396 649 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 728 (1086)
Q Consensus 649 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 728 (1086)
..+..... . ..
T Consensus 161 ~~~~~~~i-----------------------------------------------------~----------------~g 171 (369)
T PF02239_consen 161 KNLKVTTI-----------------------------------------------------K----------------VG 171 (369)
T ss_dssp SCEEEEEE-----------------------------------------------------E------------------
T ss_pred cccceeee-----------------------------------------------------c----------------cc
Confidence 22211000 0 11
Q ss_pred cceEEEEEecCCceEEEee-ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE-----
Q 001396 729 NKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF----- 802 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l----- 802 (1086)
.......|+|++++++++. .+..+-++|...... +..+..|.. .|..+...+
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~---------p~~~~~~~~php~~ 229 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKK---------PHPGPGANFPHPGF 229 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSS---------BEETTEEEEEETTT
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeecccc---------ccccccccccCCCc
Confidence 2234567888888876653 346777777554322 111111111 122222211
Q ss_pred ----EeecCCCEEEEE-eCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCceeE
Q 001396 803 ----ALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVI 873 (1086)
Q Consensus 803 ----~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~ 873 (1086)
+.+..+...++. +.+.+.+||..+++.++++...... .-+..+| +++++.+. ...++|.++|..+.+.+
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCccee
Confidence 122233333222 3456678999999999999877666 7888899 88899887 44589999999999888
Q ss_pred EEecccc-CCeEEEEEeCCCCEEEEEeCC--CcEEEEECCCCceee
Q 001396 874 SKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQT 916 (1086)
Q Consensus 874 ~~l~~h~-~~v~~l~~spdg~~l~s~s~d--g~i~iwd~~~~~~~~ 916 (1086)
.++.... ..+..+.|++||+.+..+..+ +.|.|||..+.+...
T Consensus 308 ~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 308 KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 8876333 358899999999976655443 369999999976544
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-11 Score=125.39 Aligned_cols=416 Identities=11% Similarity=0.086 Sum_probs=234.0
Q ss_pred CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-------eCCC
Q 001396 340 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH 412 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-------~~d~ 412 (1086)
|.+++.+++.| +..+++.+|+..+ +..|-+-|..-.|+|||+.+|.. ...+
T Consensus 50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta 107 (668)
T COG4946 50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA 107 (668)
T ss_pred CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence 55677776653 4455566776554 55688899999999999999983 2234
Q ss_pred EEEEEEecCCCccccceEeccccccEeE-EEecCCCCcEEEEEEeCCCcEEEE----eCCC-CceeEEeecCCcceEEEe
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~s~d~~~l~l~s~~~d~~i~iw----d~~~-~~~~~~~~~h~~~v~~~~ 486 (1086)
.+.+.+.+.|+..+. ++-| .+.+. +-|+|||+ ++++...-.-..-| .+.. |.....+ .-++.+.+.
T Consensus 108 Dly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv 179 (668)
T COG4946 108 DLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIV 179 (668)
T ss_pred cEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEE
Confidence 588888888875442 2223 33333 45999998 67765433222222 1111 1101111 122333333
Q ss_pred ecccCCccEEEEEEcCC------------eEEEEEcCCCc-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 487 PHAKENIHFIFSISVDG------------KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg------------~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+ .|| .++.|-.-- .=++|--..+. .-..+..-.+.|.+-..-.+.-++++ +-+|-+.++-
T Consensus 180 ~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~GnlYS 252 (668)
T COG4946 180 I---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGNLYS 252 (668)
T ss_pred E---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccceEE
Confidence 2 133 222221110 11234322222 11122122223333223222223333 3355677877
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc---CC-C-CCC-CC---ceEE-
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AG-G-GLP-EN---PRIC- 623 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~-~-~~~-~v---~~v~- 623 (1086)
-|+....+.+...-+ .-.+-..+.||++++- +..|.|++||..+..+...-- .. . ... .+ .-+.
T Consensus 253 vdldGkDlrrHTnFt-----dYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyled 326 (668)
T COG4946 253 VDLDGKDLRRHTNFT-----DYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLED 326 (668)
T ss_pred eccCCchhhhcCCch-----hccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhh
Confidence 777654432221111 1223335678887765 345789999998765432211 11 0 000 00 0111
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 624 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 624 ~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
|++ +|.+++..+. |...+.+.-.+..++
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-------------------------------------------------- 355 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-------------------------------------------------- 355 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--------------------------------------------------
Confidence 333 5667776665 444444332221111
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc-eeEEeeccCCccccCcccccccCCceecCCC
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 781 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1086)
.++.+.|+-..+..+++.++.+..|| .+-|++....
T Consensus 356 ----------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------- 392 (668)
T COG4946 356 ----------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------- 392 (668)
T ss_pred ----------------------cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---------------------
Confidence 01334455566666777788888887 6777765433
Q ss_pred CCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 782 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 782 g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
+ ..... +.-+.|.++.+++||++++++.+ ..+.+.|+.++.....-+...+-|+..+|+| +++++|-+--+|
T Consensus 393 -e-~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~g 465 (668)
T COG4946 393 -E-VKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEG 465 (668)
T ss_pred -e-EEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcc
Confidence 2 11111 24567999999999999999986 7899999999988766666778899999999 999999988776
Q ss_pred ----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 001396 861 ----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 900 (1086)
Q Consensus 861 ----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~ 900 (1086)
.|+++|+.+++....-. ..+.=.+-+|.||+++|..-+.
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 78999999887654433 2222345789999999876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-12 Score=141.84 Aligned_cols=331 Identities=14% Similarity=0.173 Sum_probs=201.9
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEE
Q 001396 449 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 528 (1086)
Q Consensus 449 ~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 528 (1086)
.+++++-..++.|.+.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677888999999999999999999865544344555 5688899999999999999999999887776544 5678
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----cCCceEEEEEecCCCEEEEE-ECCCcEEEEEcCC
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 603 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~ 603 (1086)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+.++..+|....++.. -+.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 12467788888888855554 4558888888876
Q ss_pred CeeEE--EEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeeccccc----cceeeeEEccCCCceecc
Q 001396 604 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 604 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~~~~ 676 (1086)
.+.+. .+... .......|+|++++++++ .....|.++|..+++.+..+.... .....+ .+|
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php-------- 227 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHP-------- 227 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EET--------
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCC--------
Confidence 65443 33322 235678999999988775 446789999988875554332100 000000 000
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
..+.+.. ....+...++.-...
T Consensus 228 --------------------------------------------------~~g~vw~--~~~~~~~~~~~ig~~------ 249 (369)
T PF02239_consen 228 --------------------------------------------------GFGPVWA--TSGLGYFAIPLIGTD------ 249 (369)
T ss_dssp --------------------------------------------------TTEEEEE--EEBSSSSEEEEEE--------
T ss_pred --------------------------------------------------CcceEEe--eccccceecccccCC------
Confidence 0000110 011111121111111
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE---e-C-CeEEEEEccCceEEE
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTIL 831 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---~-d-g~i~iwd~~~~~~~~ 831 (1086)
.+.+|+..+.+....... .... .-+..+||++++.+. + + +.|.++|.++.+.+.
T Consensus 250 ----------------~v~v~d~~~wkvv~~I~~----~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 250 ----------------PVSVHDDYAWKVVKTIPT----QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp ----------------TTT-STTTBTSEEEEEE-----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred ----------------ccccchhhcCeEEEEEEC----CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 233445555554555544 2233 667889999999998 3 3 789999999998888
Q ss_pred EEcCC-CCCeEEEEEcCCCCCEEEEEeC-C-CeEEEEEcCCceeEEEec
Q 001396 832 TIMPP-SPTATSLAFNPHDNNVIAIGMD-D-STILIYNARSSEVISKLE 877 (1086)
Q Consensus 832 ~~~~~-~~~i~~l~~s~~d~~~lasg~~-d-g~v~iwd~~~~~~~~~l~ 877 (1086)
++... ...+..+.|++ +|+.+..... . |.|.+||..|.+.+..+.
T Consensus 309 ~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 87532 23599999999 6765544433 3 379999999999988876
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=159.30 Aligned_cols=297 Identities=15% Similarity=0.202 Sum_probs=207.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS 403 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 403 (1086)
+.......+.|+|-.. .++++.....|+|||++.++.+..+. .. ......|+.+.+-. |..
T Consensus 1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~-----n~-----------~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFD-----NG-----------AFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceecccc-----CC-----------CCCCCccceeeeecccchh
Confidence 3344577888999887 47777767889999999998875421 11 11236788888864 667
Q ss_pred EEEEEeCCCEEEEEEec-CC-Ccccc---ceEeccc----cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 404 LLGVAYSKHIVQLYAYH-GG-SDARQ---QLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~-~~-~~~~~---~~~~~~h----~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
++.+|+.||.|+||+-- .+ +..+. ...+.++ .+.=.-+.|-.... .|+++|.-..|+|||+.....++.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence 89999999999999743 22 11111 1111111 11113467777666 566666688999999998888777
Q ss_pred eec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCc--eEEEEEecCCCE-EEEEeeCCCC
Q 001396 475 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG 547 (1086)
Q Consensus 475 ~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~d~~~-l~~~~~~~~~ 547 (1086)
+.. ....|+++.-.-. .|..+++|..||.|++||.+.... +..+..|... |..+.+-+.|-. |++++.
T Consensus 1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence 643 4456777765433 468999999999999999876543 4466667665 999999887765 888876
Q ss_pred ceeEEEEeCCCCeeeeEEe--cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-----CCCCCCCc
Q 001396 548 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----GGGLPENP 620 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~ 620 (1086)
+|.|++||++.......+. .|..-.+..+++..++....+++|+. +.|.||++...+ +..+.. ......+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcc
Confidence 6679999999752222211 11101134899999999999999988 999999986543 332221 12234678
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+++|+|..-++|+|+.|.+|.||.....
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999987654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-13 Score=129.45 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=171.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-----CCcEEEEeC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 466 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-----d~~i~iwd~ 466 (1086)
...+++|+.|..-+++|..+| .+||+++--+... .-.-+.+.+.-+...--.+.+.||-|+. -+.+.|||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 445599999999999998888 8999987532211 1111222222222222334334444433 257999997
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeEEecCCCC--ceEEEEEecCCCEEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGL--GCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~ 543 (1086)
...+++.++. ...+|.++.+.. + .|++ -.++.|.+|.+. +.+....+..... ...+++-+.+..+|+.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7888888886 778999999843 2 3444 356789999987 4555555544332 3444443334444444332
Q ss_pred CCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCCc-EEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 544 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
.-|+|++-|+...+. ...+..|. ..|.+++.+-+|..++++|..|+ |||||..+|.++..+.-......+.
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 257899999876554 45667777 99999999999999999999998 7999999999999998666667799
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+++|||+..+|++.++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=157.94 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=189.2
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
....+.-. .+|+|++|+|....++|.|+.+|.|.+||+..+..... ..-......|..+|..+.|-
T Consensus 235 Pe~~~~~~-s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 235 PELVLESP-SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEecC-CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEe
Confidence 33444443 49999999999888999999999999999998776311 01112256799999999997
Q ss_pred CCCC--EEEEEeCCCEEEEEEecCCCccccceEec---------cccccEeEEEecCCCCcEEEEEEeCCCcEEEEe---
Q 001396 400 PDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--- 465 (1086)
Q Consensus 400 pdg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd--- 465 (1086)
.+-. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.-=+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence 7544 49999999999999886543311111111 11236899999988776 688899999887733
Q ss_pred CCCCc-----eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 466 AVTGS-----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 466 ~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
...+. .+..+..|.++|+++.++|-.. ..+++++ |-++++|.-. ...+...+..+...+++++|||-.-.++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 22222 2335667899999999876543 2344444 9999999887 6666777777777899999999877666
Q ss_pred EEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001396 540 SCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
++. +++|.|.+||+.... ++.+..... .....+.|+++|+.+++|...|++.+|++..
T Consensus 458 ~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 458 ATV---DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEE---cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 655 348899999987543 333333222 5677888999999999999999999999864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=137.82 Aligned_cols=247 Identities=13% Similarity=0.146 Sum_probs=173.9
Q ss_pred CCCCCeeEEEeecCCC----EEEEEeCCeEEEEEccCc--eEE--EEE-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 794 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTF--KTI--LTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~----~l~~~~dg~i~iwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
.|..+++.+.|.|+.. -+...++..+|+|.+... +.. ..+ ..+..++++..|+.-+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3889999999999863 233445678999998732 211 111 235578999999988889999999999
Q ss_pred eEEEEEcCCce---eEEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEE
Q 001396 861 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 936 (1086)
Q Consensus 861 ~v~iwd~~~~~---~~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 936 (1086)
+..|||+.++. ...++-+|..+|..++|+.++ +.+||+|.||.||++|+...+-.+ -....+..+ .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~----~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPS----TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCC----Ccceee
Confidence 99999999873 467788999999999999865 679999999999999998754222 111222212 357889
Q ss_pred EEecCC-CEEEE-E-eCCeEEEEEcCCccceeccccCCccCEEEEEEeCC-CCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 937 QFHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 937 ~~s~dg-~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
+|++.. +++|+ . ....|.+.|++.......-+.+|.+.|..++|.|. ...|.|+|.|..+.+||+.+.-......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998865 56666 4 44679999998766544447789999999999995 46899999999999999986533111111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE
Q 001396 1013 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1051 (1086)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~v 1051 (1086)
...... +. .+.-+.|+|..++-++.+. +..+.+
T Consensus 329 ilay~a---~~--EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 329 ILAYTA---GG--EVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhhhc---cc--eeeeeeecccCCCEEEEEe-cCeeeE
Confidence 111111 11 2335677765556666544 334333
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-14 Score=158.50 Aligned_cols=274 Identities=14% Similarity=0.190 Sum_probs=189.4
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..++..|+.|+..|..++.+++..-++++||.||+|++||...-..-. ..++ ....+..-+..+.++.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVT 1105 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEE
Confidence 467889999999999999988773479999999999999986522110 0000 0011333568899999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCcccc----ce--EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ----QL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~----~~--~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
..+.|..+|+++.||.|++.+++-.+.-+. .. .......-|..-+|....+...++.+..-+.|..||+.+...
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 999999999999999999999876221110 00 111122234444555544433678888889999999987766
Q ss_pred eEEee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-CCceEEEEEec---CCCEEEEEeeCC
Q 001396 472 TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSA---NGRRLFSCGTSK 545 (1086)
Q Consensus 472 ~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~---d~~~l~~~~~~~ 545 (1086)
+.+++ ...+.|++++.++ .+.++++|+..|.+.+||++-...+..+..+ ..++..+..+| .....++++..
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~- 1262 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS- 1262 (1431)
T ss_pred HHhhhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc-
Confidence 65543 3457899999854 5679999999999999999998888766543 34677776665 33566665542
Q ss_pred CCceeEEEEeCCCCeeeeEEeccc-c---------------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQ-L---------------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 607 (1086)
+.+.|.+|++.+|.....+.... . +.-....+.+...+..+++|+.|..|+.||.......
T Consensus 1263 -~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1263 -SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred -CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 36679999999997766665431 0 0011223344445678899999999999998765544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=162.54 Aligned_cols=230 Identities=18% Similarity=0.195 Sum_probs=151.9
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
+......+.+..|...+...+|||||++ ||..+.+ ..|.+||+.+|+...... +.+|
T Consensus 190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~-- 249 (429)
T PRK01742 190 DYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH-- 249 (429)
T ss_pred CCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc--
Confidence 3334445677888889999999999997 5555543 369999998886432111 2333
Q ss_pred cEEEEEECCCCCEEEEEe-CCCEEEEE--EecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 392 SVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
..+++|||||++|++++ .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||++..
T Consensus 250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEEC
Confidence 34689999999998875 57765555 6655542 2 35567777889999999995 233444678888887643
Q ss_pred C-ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 469 G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 469 ~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
. .....+ .+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++.++.
T Consensus 324 ~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~- 394 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL- 394 (429)
T ss_pred CCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-
Confidence 2 222333 3433 34455 55778888887765 45599988765433222 23356789999999999875322
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 583 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 583 (1086)
...+.+++ .+|..++.+..+. +.+...+|+|-
T Consensus 395 ~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 395 GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence 22334444 3567777787666 67888889874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-13 Score=133.72 Aligned_cols=288 Identities=16% Similarity=0.159 Sum_probs=190.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC-CCEEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~ 408 (1086)
.+..++|++.-- -+|++..|-.|+|||-.... ... +-......|+|++|-|. ++-||.|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 677888888554 37888999999999976622 211 01224578999999995 4677888
Q ss_pred eCCCEEEEEEecCCCccc-----------cceEeccccccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEee
Q 001396 409 YSKHIVQLYAYHGGSDAR-----------QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~-----------~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~~~~~~~~~~ 476 (1086)
+..| |.||.....-... +.....+| .+|+++.|.+||. .+++++. |..|.|||..+|..+....
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7777 9999875321111 11223355 6899999999999 6777764 6689999999998776554
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
...+.+.-+.|+| |+.+|++++-|+..++|.....-.........+.|...+|+|+|++|+..... ...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence 4567788889955 77799999999999999655444444444455599999999999988765531 222322211
Q ss_pred C--CCee-----------e------eEEecccccCCceEEEEEecCCCEEEEEECC--------CcEEEEEcCCCeeEEE
Q 001396 557 S--EGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 557 ~--~~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 609 (1086)
. .+.. + ....+...-.+++.+++|.|.|.++++.-.. +.|.+||.+.--....
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 1 1100 0 0111111113678899999999999985432 3477788765444433
Q ss_pred EcC-CCCCCCCceEEEec---CCCEEEEEECCCcEEEEECC
Q 001396 610 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 610 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 646 (1086)
... .........++|+| ++.+|.++-..|.+.-|++.
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 311 11112245677777 67788888788888877654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-12 Score=140.12 Aligned_cols=518 Identities=12% Similarity=0.132 Sum_probs=307.6
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc------------cccceEeccccccEeEEEecCCCCcEEEEEEe
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 456 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~ 456 (1086)
......|++|+....|+|+|+.||.++|..+.+... +....++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 446788999999999999999999999998875432 112235789999999999998888 789999
Q ss_pred CCCcEEEEeCCCCceeEEee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC
Q 001396 457 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 457 ~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d 534 (1086)
.+|.|.||-+-.|.-...+. ...+.|.+++| +.||..+...-.||.|.+=.++.. .+.--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence 99999999988886554332 24466888888 558889999999998877655432 22222222333457889999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCe-------eeeEEec-ccccCCceEEEEEe--------cCCCEEEEEECCCcEEE
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i 598 (1086)
.+.++.+-. .+.+.++|.+..- +.....+ .......|..+.|. |+...++.+-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887765 4568899866421 1111111 01011235555553 57889999999999988
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecccc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 678 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 678 (1086)
-.-.+......+... -.+..+.|+++|..|++++.+..- ... ..++.+.|-
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da-----~~~----------~d~n~v~Fy----------- 294 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDA-----DEP----------TDSNKVHFY----------- 294 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccc-----cCc----------cccceEEEe-----------
Confidence 765544333333322 236788999999999999875321 000 001111110
Q ss_pred CCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 679 ~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
+|-|+.+ |++++ ....|+++.|-..|-+++. ..|+.|.+=++.
T Consensus 295 ----------sp~G~i~------gtlkv--------------------pg~~It~lsWEg~gLriA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 295 ----------SPYGHIV------GTLKV--------------------PGSCITGLSWEGTGLRIAI-AVDSFIYFANIR 337 (1189)
T ss_pred ----------ccchhhe------EEEec--------------------CCceeeeeEEcCCceEEEE-EecceEEEEeec
Confidence 1112111 11000 1233444555444433222 223333332222
Q ss_pred CCcc----------ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEc-cC
Q 001396 759 RNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV-MT 826 (1086)
Q Consensus 759 ~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~-~~ 826 (1086)
.+-. ...+.......+.+||..+.+.... .-....+++++.+--.|+.-. +|.+.-++. ++
T Consensus 338 P~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~ 410 (1189)
T KOG2041|consen 338 PEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN 410 (1189)
T ss_pred ccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCCcchhhhhc
Confidence 1110 0111111223466788777654433 223456778877766666554 466554422 22
Q ss_pred ceEEEEEc-----CC--C---CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------------------------
Q 001396 827 FKTILTIM-----PP--S---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------------------------ 872 (1086)
Q Consensus 827 ~~~~~~~~-----~~--~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------------------------ 872 (1086)
...+..+. +. . ..|.-.-..- ++..++.++.+ .+.+|.....+.
T Consensus 411 ~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga 488 (1189)
T KOG2041|consen 411 RSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGA 488 (1189)
T ss_pred ccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccch
Confidence 22211111 00 1 1122222222 56677777766 578887643211
Q ss_pred --------EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 --------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
..++.|..++|.+++.| .++|..+-..|.|.-+.+....... ...- ...+..++.+.+...
T Consensus 489 ~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~y~~----n~~~y~~~lNCnstR 557 (1189)
T KOG2041|consen 489 QDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----SYPV----NPSIYSIKLNCNSTR 557 (1189)
T ss_pred hhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----cccc----CchheeEeeccCcch
Confidence 13445666788888876 5788899999999999998743222 2111 135889999999999
Q ss_pred EEE-EeCCeEEEEEcC---CccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 945 FLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 945 l~~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+|+ -.-|.+.+.|+. +|..+.-+.......|+.+.|..|+..+++--..-.++|++-
T Consensus 558 lAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 558 LAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred hhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 988 456777777765 455554445555778999999988877665544445666653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=151.78 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=224.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++...... ..+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7889999999999999999999999999999999988754432 34899999888898875544799999999999876
Q ss_pred CC-CCce--eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC---CCC---ceEEEEEecCCC
Q 001396 466 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR 536 (1086)
Q Consensus 466 ~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~---~i~~~~~s~d~~ 536 (1086)
+. +|.+ ...+..|.++|..++.-|. ....|.+++.|+.+.-.|++.......+.. +.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 4433 3455679999999998654 345799999999999999987665433321 222 467888888766
Q ss_pred -EEEEEeeCCCCceeEEEEeCCCCee------eeEEeccc---ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--C
Q 001396 537 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 604 (1086)
Q Consensus 537 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~ 604 (1086)
.+++++. +..+++||.+.-.. +..+..+. ...-.|++++|+.++.-+++...|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5556554 66889999764221 22332221 1124689999998988899988999999995442 2
Q ss_pred ----------eeEEE-EcCCCCCCCCceEEE-ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 605 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 605 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
..... +.+|.....|..+-| .|...++++|++-|.|.||+-.+++.+..+.+...-|+|+.-+|.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~--- 447 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH--- 447 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC---
Confidence 11222 455655555777765 578899999999999999999999999999988888888887754
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
-..|++.+-|..|+||...
T Consensus 448 -------------------~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 448 -------------------LPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -------------------CchhhccCCccceeeecCC
Confidence 4568899999999999863
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=134.08 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=176.1
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC-CC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-VT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~-~~ 468 (1086)
-.+|+|.||++|+..+|.+.....|.||.....+......++..|...|+.++|+|.++ .|++|+.|..-++|.. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 47999999999999999999999999999999887777788999999999999999998 7999999999999998 33
Q ss_pred C--ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EEecCCCCceEEEEEecCCCEEEEEe
Q 001396 469 G--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 469 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+ ++...+..++...+++.|+|.+ ..+++|+....|.||=++....= ..-......|.++.|+|++-+|++|+
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 3445566789999999997654 58999999999999987765432 23344556799999999999999998
Q ss_pred eCCCCceeEEEEeC-----CC-------------CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 543 TSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
. |+..+++.. +. |+++..+... .+.+..+.|+|+|..|+-.+.|+++.+-|....
T Consensus 166 ~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~---ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 T----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS---GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred c----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC---CCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 6 445666532 21 1223333322 378999999999999999999999999998776
Q ss_pred e-eEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 605 Q-LLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 605 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
. ....+.... -+..++.|-.+...+
T Consensus 239 ~~~v~~~~~~~--lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 239 SERVQSVATAQ--LPLLSVSWISENSVV 264 (361)
T ss_pred chhccchhhcc--CCceeeEeecCCcee
Confidence 4 233222211 234556665544333
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=134.00 Aligned_cols=241 Identities=14% Similarity=0.097 Sum_probs=181.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
++--.++|+|.+|++|+. .+|++-....|.||.......-. ..+.+..|...|+.+.|+|.+.
T Consensus 6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~sn 68 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSN 68 (361)
T ss_pred eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCC
Confidence 344456999999999998 58998888999999987765211 1223778999999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----EEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~ 479 (1086)
.|++|+.|..-+||....+...++...+..|...++++.|+|.++ .+++||.-..|.||=.+...-= +.-+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 999999999999999966666666667888999999999999999 7999999999999876644321 2223467
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEc-----CC-------------CceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLY-----DS-------------LGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----~~-------------~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
..|+++.|++ ++-+|++|+.|+..|++.. +. +.....+....+.+..+.|+|+|..|+-.
T Consensus 147 Stv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 147 STVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred cceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 7899999976 4568999999999999953 11 11122334566789999999999999988
Q ss_pred eeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEecCCCEEEEEECC
Q 001396 542 GTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 593 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 593 (1086)
+- +..+.+-|..... .+......+ -+..++.|-.+. .+++++.|
T Consensus 225 ~H----ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 225 GH----DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred cC----CCceEEeecCCCchhccchhhcc---CCceeeEeecCC-ceeecCCC
Confidence 76 6678888876654 233333323 466777776553 45555555
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=150.88 Aligned_cols=245 Identities=13% Similarity=0.187 Sum_probs=171.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+.+.|.||++-|+|++|+.||. +|++||.|-.+.|||.-..+.++. +-+||...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence 4456899999999999999998 799999999999999987777654 367899999999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEecCCCc-------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 400 P--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 400 p--dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
| +.+.+++|..|..|+++|+...+. ..+...+..|..+|..++-.|++.. .+.+++.||+|+-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence 9 578899999999999999985221 2233356689999999999999966 79999999999999997532
Q ss_pred e-eE---------EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE----E-ecCCCCceEEEE-EecC
Q 001396 471 R-TY---------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSAN 534 (1086)
Q Consensus 471 ~-~~---------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~-~~~~~~~i~~~~-~s~d 534 (1086)
. .. .+...--...++.++|. +..+|++|+.|-..++||.+...... . ...+.....++. |+|.
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~ 260 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG 260 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence 1 11 11111123466777776 44699999999999999953211111 0 011111222222 2222
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
+- .. ..|..... . ..++.+.|+|+|.-|+..-....|+++|+..++.....
T Consensus 261 hl----kn--------------~~gn~~~~----~---~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HL----KN--------------SQGNLDRY----I---TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cc----cC--------------cccccccc----e---eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 21 00 00100000 0 24667889999998888766678999999987766544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=142.50 Aligned_cols=284 Identities=14% Similarity=0.189 Sum_probs=207.0
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
+|...-+.|..||||+|++|+|..--.|++||+..-.+...+.+ ....|.-.-+|.|-..+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~ 109 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS 109 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence 56668899999999999999999999999999987665543221 23456666667777777
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
+.-..|.+|.+-.-. |..... .+ ...-.+++++.-... |+.++....|+-++++.|+.+..|....+.++++
T Consensus 110 v~L~~DR~IefHak~-G~hy~~--RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAKY-GRHYRT--RI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eEeecCceeeehhhc-Ceeeee--ec---CcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence 777788877664322 111100 01 111234555544443 3344445579999999999999998888999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------CC-----ceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
.+++. ..+|++|+.+|.|.+||.+.......+... .+ .|+++.|+.+|-.+++|+. .|.+++|
T Consensus 182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy 255 (703)
T KOG2321|consen 182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY 255 (703)
T ss_pred eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence 88653 358999999999999999887765544322 12 4899999999999999987 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCC--CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
|+++.+++..-.... .-+|..+.|.+.+ +.+++ .....++|||-.+|+....+... ..++.+|+-|++.+++
T Consensus 256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF 329 (703)
T ss_pred EcccCCceeecccCC--ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence 999988765543222 4688999997763 33443 34567899999999999888644 3489999999999999
Q ss_pred EEECCCcEEEEECCCC
Q 001396 633 VIANENRIKILETPES 648 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~ 648 (1086)
++-.++.+..|=+...
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999888887766543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-09 Score=126.20 Aligned_cols=537 Identities=10% Similarity=0.110 Sum_probs=300.2
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEE----EecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
..+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 11 2234566899999999999 56656657777765
Q ss_pred eCC---------------C--------CceeEEeecCC------------------cce----EEEeecccCCccEEEEE
Q 001396 465 DAV---------------T--------GSRTYSFEGHG------------------APV----YSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 465 d~~---------------~--------~~~~~~~~~h~------------------~~v----~~~~~~~~~~~~~l~s~ 499 (1086)
+-. . |+.-..|.|.. +.+ ..+.+++.+||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 310 0 11111111100 001 12334447899999988
Q ss_pred Ec---C---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc-ccC
Q 001396 500 SV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQH 572 (1086)
Q Consensus 500 s~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~ 572 (1086)
+. . ..+|||+-+ +..........+--.+++|-|.|+++++... ......|..|. ++|-.-..|.... ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 75 3 479999754 3333333333444567899999999998875 33355677776 4454444444321 123
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE--EEEcCCCCCCCCceEEEecC-CCEEEEEECCCcEEEEECCCCC
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
..|..+.|++|+..|+..-.|. |.+|...+..-. +.+..... ..+..+.|+|. ...|.+.+.+|.+..++..-..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 6799999999999999877655 999999887643 33333222 23455999994 5567777777888776544110
Q ss_pred eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee---ecCCccccccccCCcc
Q 001396 650 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL---FARPSECQSLLLPSKV 726 (1086)
Q Consensus 650 ~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~---~~~~~~~~~~~~~~~~ 726 (1086)
. .++.. .|+..-.+..-....+.+-.+. ...|.....+.
T Consensus 383 ~---------------~s~~~------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~----- 424 (928)
T PF04762_consen 383 S---------------RSPGS------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE----- 424 (928)
T ss_pred E---------------ecCCC------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----
Confidence 0 00000 0100000101111122222211 11222222232
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
-...|..++|++++..+++...||.+.+|.++...............+.. . . ...... ......+..++|..
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~--~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL---D--S-MDISDS--ELPLGSLRQLAWLN 496 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc---c--c-cccccc--ccccccEEEEEEeC
Confidence 34579999999999989999999999999876543211000000000000 0 0 000000 01345678888888
Q ss_pred CCCEEEEEeC----CeEEEEEccCc---eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-EEEecc
Q 001396 807 NDAYLFSASG----GVISLYIVMTF---KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEG 878 (1086)
Q Consensus 807 dg~~l~~~~d----g~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~ 878 (1086)
+...++.... +.+.++++... ............+..+...+ +...++.-..+|.+...+...... +..|..
T Consensus 497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~ 575 (928)
T PF04762_consen 497 DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ 575 (928)
T ss_pred CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCC
Confidence 8877777653 46888887433 23333333445566666665 444466677799888776654322 223332
Q ss_pred ccCCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEE-EEeCCeEE
Q 001396 879 HSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLA 954 (1086)
Q Consensus 879 h~~~v~~l~~spdg~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~d~~i~ 954 (1086)
-...+. +....+.. .++.-+..|.+++ ++ . .+. ..+++.++ .+.+|+ +.....++
T Consensus 576 ~c~~~~-~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 576 PCPWME-VCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLK 634 (928)
T ss_pred CCcEEE-EEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEE
Confidence 222222 23333333 4554455554443 22 1 111 13555555 344554 46777788
Q ss_pred EEEcC-CccceeccccCC----ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 955 IYEAE-ELTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 955 vwd~~-~~~~~~~~~~~h----~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
..++. .-..+......+ ...+ .--..|..|+++-....=.|..++.|.+-
T Consensus 635 fv~L~~~~~~l~~~~~~~~~~~de~~---R~VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 635 FVHLNSSVEDLEIPPDSPENSYDERC---RRVERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred EEECcCchhhcccccCcccccccccc---ccCccCCEEEEEeCCCceEEEEcCCCchh
Confidence 88887 111111111111 1122 22346778887766556667788888775
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=142.78 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=125.6
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCceEEEEEc----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001396 805 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 869 (1086)
Q Consensus 805 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---------- 869 (1086)
.+++--+..+- -|.+.+.|....+..+.+. -....++|+.|-|.+...+.++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45565666665 4888888875422221111 12368999999996667777788899999997531
Q ss_pred ----ce--------------eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCC
Q 001396 870 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 931 (1086)
Q Consensus 870 ----~~--------------~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 931 (1086)
+. ++..+.--.+.|...+|||||++||+.+.||.+||+|..+.+ .+-..+... +
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence 11 122222234578889999999999999999999999999844 233333333 3
Q ss_pred CceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC
Q 001396 932 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC 982 (1086)
Q Consensus 932 ~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 982 (1086)
...|++|||||+||++ |.|.-|.||.+...+.++. -.+|..+|+.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence 7899999999999999 6889999999999988875 668999999999987
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-15 Score=149.34 Aligned_cols=273 Identities=18% Similarity=0.181 Sum_probs=213.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
....+.|+.+|++ ++.|+..|.|..+|+.++++.....+ ...|..+.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV--------------------METVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeeh--------------------hhhhhhhhhhcchHHHHhhh
Confidence 6788999999997 56667779999999999998876443 26889999999999999884
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
...++|||-..- .+. .+..| ..|..+.|.|--- +|++++..|.++--|+.+|+.+..+..-.+.+..++-+|
T Consensus 190 -K~y~yvYD~~Gt-ElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNGT-ELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCCc-EEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 556999996653 233 33333 4689999999766 899999999999999999999999988888888888755
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
- ...+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.+. |..+.|||++.-..+.++.. .
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence 4 358889999999999999999999999999999999999999999999987 77899999998877666665 2
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEE-cCCCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.+...+++|..| +++++....+.||. .-.+. .....-.|.-...|..+.|.|-...|-+|...|.-.+.
T Consensus 335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 467788888765 55666666899994 32221 11111122222368899999988888887776654443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-11 Score=135.04 Aligned_cols=276 Identities=15% Similarity=0.138 Sum_probs=189.5
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC--ccEEEEEECCCCCEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG--VSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~spdg~~las 407 (1086)
++.+.++-. +|||| |+ .-.|.+||+..+..+.... +...+..|. ..+.+ .+.++++
T Consensus 9 ~l~~~~~~~--~~lla-g~-gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~l-----~~~~~v~ 66 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLA-GS-GPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVKL-----LSGKIVT 66 (967)
T ss_pred cccchhhcc--ceeee-cC-CCceEEeeCCchhHhhhhh-------------hhccccccccccccee-----ccceEEE
Confidence 344444444 46554 33 3679999999988775311 111133441 11111 2345555
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce--EE-
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YS- 484 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v--~~- 484 (1086)
+..-+.+..=+..-.. +..-.+.|....+..+.+ .++.+..++.+.+||...+..+..+.. .... .+
T Consensus 67 ~~~~~~v~~~~~~~~~-------~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~ 136 (967)
T KOG0974|consen 67 CAKSDEVYVKEASNQI-------IERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSS 136 (967)
T ss_pred EEeecceeecchhhhh-------hhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCC-CceEEEEeE
Confidence 5443333332222111 112233444466666667 577777789999999888877766643 2222 11
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee-
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR- 563 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~- 563 (1086)
+.+-.+.+.-++++|+.-+.|.+|+.........+.+|.+.+.++.++-||+++++++. |..+++|++++++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 22223445568999999999999998855555568899999999999999999999997 7789999999988776
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
..-+|. ..+..++|.|+ .++++++|-+.++|+... ..+..+..|.. ..+..++..++...+++++.|+.+++|
T Consensus 213 ~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 213 TGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cccccc---ceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhh
Confidence 555666 89999999998 899999999999997654 44446665544 458999999999999999999999999
Q ss_pred ECCCC
Q 001396 644 ETPES 648 (1086)
Q Consensus 644 ~~~~~ 648 (1086)
++...
T Consensus 286 ~l~~r 290 (967)
T KOG0974|consen 286 DLNGR 290 (967)
T ss_pred hhhcc
Confidence 98754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-13 Score=128.81 Aligned_cols=238 Identities=12% Similarity=0.153 Sum_probs=169.2
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC--CCeEEEEEcCCCCCEEE-EEeCC------CeEEEEEcC
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNAR 868 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~~ 868 (1086)
....++|..|...++++.+...+||+.+..+.......+. -.+..+-|-. ++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence 3455999999999999999889999998755433332222 2233333432 3444 44433 489999966
Q ss_pred CceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec--CCCEEE
Q 001396 869 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFL 946 (1086)
Q Consensus 869 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~ 946 (1086)
..+++.++. ...+|.++.+++| .+|+.- .+.|+||.....-. ....+.+..... . -++..| +-.+||
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPk----G--lC~~~~~~~k~~La 152 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPK----G--LCSLCPTSNKSLLA 152 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCC----c--eEeecCCCCceEEE
Confidence 677777777 6788999999876 455443 56799999885321 122232222211 1 233444 333444
Q ss_pred E-E-eCCeEEEEEcCCccc-eeccccCCccCEEEEEEeCCCCEEEEEECCCc-EEEEEcCCCceeeeeccccccCCCCcc
Q 001396 947 L-V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSC 1022 (1086)
Q Consensus 947 ~-~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~ 1022 (1086)
. | .-|.|+|-|+...+. .......|...|.+++.+-+|..+||+|..|+ |||||..+|..+.+++.+.
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-------- 224 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-------- 224 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC--------
Confidence 4 4 458999999986665 23457789999999999999999999999998 8999999999999988332
Q ss_pred CcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1023 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1023 ~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
+.....+++|+| +...||++++.|+|+++.+.+..
T Consensus 225 d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 DRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred chheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 223356999999 78999999999999999997755
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=148.01 Aligned_cols=238 Identities=10% Similarity=0.121 Sum_probs=157.4
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC---CCEEEEEEecCCCcccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 427 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 427 (1086)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|++|++.+|+...
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ- 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 368888887654332 3446678999999999999997642 4579999998876322
Q ss_pred ceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC-Ce
Q 001396 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK 504 (1086)
Q Consensus 428 ~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~ 504 (1086)
+....+.+..++|+|||+.+ +++.+.++ .|.+||+++++... +..+...+....|+ +||+.|+..+.+ +.
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR 310 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence 22233345578999999952 33334444 58999998887654 43444566677774 577777766654 44
Q ss_pred EEEE--EcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 505 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
..+| |+.++... .+...........|+|||++++..+.. ++...|++||+.+++.. .+... .......|+|
T Consensus 311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~Sp 383 (429)
T PRK03629 311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAP 383 (429)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCC----CCCCCceECC
Confidence 4555 55554433 333334445678999999999887643 23567999999888644 33321 2234678999
Q ss_pred CCCEEEEEECCCc---EEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 583 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 583 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||++|+.++.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 9999999887764 677777 455555555432 2467788876
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-11 Score=138.66 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=153.7
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|....+.-+.+ .++.++.+..+.|||...+....... .+.+. --....-+.++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~--------~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERC--------TLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceE--------EEEeEEEEeccCcEEEEEecc
Confidence 444466666666 48888889999999998877664311 00000 001223355688888999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeecCCcceEEEeec
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH 488 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~ 488 (1086)
.-+.|.+|+....+... .+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++.+. ..-+|+..|..++|.
T Consensus 153 v~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998433211 4789999999999999999 89999999999999999998876 667899999999996
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
++ .+++++.|.+.++|+.+..... .+..|. ..+..++..++.-.+++++. |+.+++||+...
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 54 8999999999999976544433 455544 47899999888888888886 777999997653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=148.00 Aligned_cols=237 Identities=13% Similarity=0.064 Sum_probs=161.8
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC---CCEEEEEEecCCCcccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ 427 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 427 (1086)
..|.+||...+.... +..|...+.+.+|||||+.||..+. +..|++||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888876544322 5568889999999999999998864 468999999987642
Q ss_pred ceEeccccccEeEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC-
Q 001396 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG- 503 (1086)
Q Consensus 428 ~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg- 503 (1086)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+ +||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 24456677889999999995 3455665655 77789887765 4565566666667774 56777776663 33
Q ss_pred -eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 504 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 504 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
.|.+||+..+...... .....+....|+|||+.|+..... .+...|.+||+.++.. +.+.. . ..+....|+|
T Consensus 314 ~~Iy~~d~~g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp 386 (435)
T PRK05137 314 PQLYVMNADGSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP 386 (435)
T ss_pred CeEEEEECCCCCeEEee-cCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence 5778887765544332 234456678899999999987643 2356799999866543 33322 2 2466788999
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 583 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 583 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||+.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 99998875542 3578888876554 3443221 245667765
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-12 Score=127.91 Aligned_cols=259 Identities=12% Similarity=0.112 Sum_probs=160.9
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
..|++++|-|.+..-++.+..+-|.+|..+..... . ..++ ..+..+.... ...+| ..|+.+.+.+||
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~-----~--r~~~---~~s~~~~qvl--~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-----N--RNIR---MMSTHHLQVL--QDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCccccc-----c--cccc---cccccchhhe--eCCCC-ceeeEEEEcCCC
Confidence 45778888887766777777777888876543210 0 0000 0111111121 22234 789999999999
Q ss_pred CEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEE
Q 001396 809 AYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 886 (1086)
Q Consensus 809 ~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l 886 (1086)
..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|+...........--.+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 9999998 57899999999888766655667899999999 89999999999999999654332222222344589999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcee----------eeeee------eccCCCccCCCCceEEEEecCCCEEEEEeC
Q 001396 887 VFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 887 ~~spdg~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
+|+|+|++|..+... .=++|.+.-.... ....+ ....+.....+...+++|.|.|.+||+...
T Consensus 287 cWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 999999987655432 2345554321110 00111 111111111257899999999999999533
Q ss_pred C---------eEEEEEcCCccceeccccCC--ccCEEEEEEeC---CCCEEEEEECCCcEEEEEcC
Q 001396 951 T---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 951 ~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
+ .|.+||....-.+.-...+- ......++|+| +|.+|..+=.-|.+.-|++.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 35667765433322211111 22345667776 56666666666777666654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-13 Score=149.04 Aligned_cols=233 Identities=14% Similarity=0.101 Sum_probs=153.4
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEe--ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
.+......+.+..+.+.+...+|||||+.++.+.. .+..|.+||+.+|+.... ....+
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~~ 243 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFPR 243 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCCC
Confidence 33334444556667778999999999997444432 235799999988865431 12223
Q ss_pred cEEEEEECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CC--cEEEEe
Q 001396 392 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK--TIKVWD 465 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~--~i~iwd 465 (1086)
.+..++|||||+.|+.. +.+| .|++||+.+++..+ +..+...+....|+|||+ .|+..+. ++ .|.++|
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEE
Confidence 34568999999999876 3344 59999998876432 344455678999999999 4554443 34 455557
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+.+++. ..+..+.......+| ++||++|+..+.+ ..|.+||+.++....... ........|+|||+.|+..+
T Consensus 318 ~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 318 INGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD--TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred CCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC--CCCCCCceECCCCCEEEEEE
Confidence 776654 344434444555666 4577788776543 358889988776543322 12334678999999999888
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
.++. ...++++++. |...+.+.++. +.+...+|+|
T Consensus 393 ~~~~-~~~l~~~~~~-G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGM-GSVLNLVSTD-GRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred cCCC-ceEEEEEECC-CCCeEECccCC---CCcCCcccCC
Confidence 6433 5568888884 55556666655 6777888887
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-10 Score=113.68 Aligned_cols=534 Identities=13% Similarity=0.114 Sum_probs=280.5
Q ss_pred CCccCCCccceeeeeccCCCCceEeeecCCCceEEEE----Ee--ccCcEEEEecCCCceeeeeeeeeeeccccceeeee
Q 001396 310 ETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 383 (1086)
Q Consensus 310 ~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~----gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1086)
..|...+..-..+.+..|-+-|+.-.|+|||+.++.+ |+ .-+.+.+.+.+.|+..+. +
T Consensus 60 dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-T--------------- 123 (668)
T COG4946 60 DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-T--------------- 123 (668)
T ss_pred HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-E---------------
Confidence 3344444444456667777889999999999974442 22 235688888888887653 1
Q ss_pred eeecCCCccEEE-EEECCCCCEEEEEeCCC----EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC
Q 001396 384 ALVRDPGVSVNR-VVWSPDGSLLGVAYSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 458 (1086)
Q Consensus 384 ~~~~~h~~~V~~-l~~spdg~~las~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d 458 (1086)
.+ | ..-+. .-|+|||+.|++...-. --.+|.+.....-. -.-.-++.+.+.+- ||. ++.|-.-
T Consensus 124 -yf-G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~----e~LnlGpathiv~~-dg~---ivigRnt 191 (668)
T COG4946 124 -YF-G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT----EPLNLGPATHIVIK-DGI---IVIGRNT 191 (668)
T ss_pred -Ee-c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee----eeccCCceeeEEEe-CCE---EEEccCc
Confidence 12 2 23333 45999999998874322 12344443321100 01123445555553 342 3333111
Q ss_pred C------------cEEEEeCCC-CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc
Q 001396 459 K------------TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG 525 (1086)
Q Consensus 459 ~------------~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 525 (1086)
- .=++|--.. |+.-..+-.-.+.|++-.+. .++..+....+|.=.+|..+-...-..-...-..
T Consensus 192 ydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd 268 (668)
T COG4946 192 YDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD 268 (668)
T ss_pred ccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchh
Confidence 0 123453222 22222222222222221111 1122333344444444433322111111111112
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc---C-----CceEEEE-Eec-CCCEEEEEECCCc
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---H-----NSVSVVH-FDT-AKDQILAAGDDHV 595 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~-----~~v~~~~-~~~-~~~~l~~~s~dg~ 595 (1086)
..+-..+.||+.++... .+.|+++|..+......--+.... . .+..-+. |++ +|.+++..|. |.
T Consensus 269 YY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 269 YYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GK 342 (668)
T ss_pred ccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-Cc
Confidence 33334567999988754 345999998876543322221100 0 0111111 222 4667766664 66
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC-cEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
..|.+.-.+-.++.-. ...|.-..+..+++-++.|..|| .+.|++..+++.-....
T Consensus 343 aFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------------------- 399 (668)
T COG4946 343 AFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------------------- 399 (668)
T ss_pred EEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-------------------
Confidence 6676665555444321 22366667777777888999988 88899888663221111
Q ss_pred ccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEE
Q 001396 675 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 754 (1086)
Q Consensus 675 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 754 (1086)
.-+.|.++..+++|+.++++.....+.+
T Consensus 400 ----------------------------------------------------~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 400 ----------------------------------------------------DLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred ----------------------------------------------------CccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 3356888999999998888888877777
Q ss_pred eeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-C----CeEEEEEccCceE
Q 001396 755 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKT 829 (1086)
Q Consensus 755 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-d----g~i~iwd~~~~~~ 829 (1086)
.|++.+ ...+.- .....-|+.++++|+++++|.+- + ..|+++|+.+++.
T Consensus 428 ididng----------------------nv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 428 IDIDNG----------------------NVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEecCC----------------------CeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 766543 211111 12567799999999999999986 3 3599999998887
Q ss_pred EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--eccccCCeEEE----EEeCCCCEEEE-EeCCC
Q 001396 830 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGL----VFSDALNILVS-SGGDA 902 (1086)
Q Consensus 830 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~v~~l----~~spdg~~l~s-~s~dg 902 (1086)
...-. ....=.+-+|.| |+++|.--+.- -.|..+...+.. +..|..+-..+ ..||-.+..-. -+.+|
T Consensus 482 y~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~ 555 (668)
T COG4946 482 YDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAG 555 (668)
T ss_pred EEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCcccc
Confidence 65543 444446778999 88888765421 112222221111 11222221111 01222222111 12333
Q ss_pred cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-------------E--eCCeEEEEEcCCccceecc
Q 001396 903 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQW 967 (1086)
Q Consensus 903 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-------------~--~d~~i~vwd~~~~~~~~~~ 967 (1086)
.+-+=++... ...+..-.+ .-.+++=-.+|+.+.- + .-|.+.+||+++...-..
T Consensus 556 e~dle~ie~r----~eP~pVee~------dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~- 624 (668)
T COG4946 556 EVDLEGIEDR----VEPFPVEEG------DYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY- 624 (668)
T ss_pred ceehhhhccc----ccccccCcc------ceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-
Confidence 3332222210 011111111 1222222333332221 1 246789999987654321
Q ss_pred ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 968 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 968 ~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
...++++..|+||+.++. =.||.+++++++.
T Consensus 625 ----k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 625 ----KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ----hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 457899999999999988 6899999999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=145.55 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=199.1
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceec
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 698 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 698 (1086)
-+.+.++.+|++|+.|+..|.+..+|..++.....+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------------------------------ 169 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------------------------------ 169 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------------------------------
Confidence 47789999999999999999999999998765544331
Q ss_pred cccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceec
Q 001396 699 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 778 (1086)
Q Consensus 699 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 778 (1086)
...|..+.|-.+.+ +++......+.|||-.
T Consensus 170 -----------------------------~Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~-------------------- 199 (545)
T KOG1272|consen 170 -----------------------------METVRDVTFLHNEQ-FFAVAQKKYVYVYDNN-------------------- 199 (545)
T ss_pred -----------------------------hhhhhhhhhhcchH-HHHhhhhceEEEecCC--------------------
Confidence 12334444444444 3344444566666522
Q ss_pred CCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe
Q 001396 779 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 857 (1086)
Q Consensus 779 ~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 857 (1086)
|.++.... ....|..+.|-|..-+|+++++ |.+.--|+.+|+.+..+....+.+..++-+| -+..+-+|.
T Consensus 200 ---GtElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 200 ---GTELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred ---CcEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcC
Confidence 22222211 4567888999999989998885 8999999999999999999999999999999 777999999
Q ss_pred CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEE
Q 001396 858 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 937 (1086)
Q Consensus 858 ~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 937 (1086)
..|+|.+|...+.+++..+-.|.++|.+|++.++|+|+||+|.|..++|||+..-.... ....+ .+...++
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~--t~~tp-------~~a~~ls 341 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH--TYRTP-------HPASNLS 341 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc--eeecC-------CCccccc
Confidence 99999999999999999999999999999999999999999999999999999844211 11111 1466788
Q ss_pred EecCCCEEEEEeCCeEEEEEc-CCcc-ceeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 938 FHKDQTRFLLVHETHLAIYEA-EELT-CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 938 ~s~dg~~l~~~~d~~i~vwd~-~~~~-~~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
||..|. ||++....+.+|.= -.+. +....+..| .+.|..+.|.|-...|-.|-.-|.-.
T Consensus 342 ~Sqkgl-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 342 LSQKGL-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cccccc-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 887765 56666678999953 2222 223333345 66999999999777676665555433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=147.36 Aligned_cols=238 Identities=15% Similarity=0.107 Sum_probs=157.9
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCcccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ 427 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~ 427 (1086)
..|.+||...+.... +..+...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 468899986543322 44577789999999999999988643 479999998876432
Q ss_pred ceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCe
Q 001396 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK 504 (1086)
Q Consensus 428 ~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~ 504 (1086)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ +||+.|+..+. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3344455668899999996 334555555 599999988875 4455555555667774 57777776654 454
Q ss_pred --EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 505 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|.++++.+++.... ..........+|+|||+.++..... ++...|.+||+.+++.. .+.. . .......|+|
T Consensus 316 ~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp 388 (433)
T PRK04922 316 PQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP 388 (433)
T ss_pred ceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence 66666665544332 2233344578999999999887642 33557999999888755 3322 1 2334568999
Q ss_pred CCCEEEEEECC---CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 583 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 583 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
||++++..+.+ +.|+++++.. .....+..+. ..+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 99998876643 4588888854 3444444322 2356667765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=148.92 Aligned_cols=232 Identities=15% Similarity=0.134 Sum_probs=153.5
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEec---cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.+......+.+..|...+...+|||||++ |+..+. ...|.+||+.+|+... +..+.
T Consensus 189 ~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~ 247 (433)
T PRK04922 189 ADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFR 247 (433)
T ss_pred ECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCC
Confidence 33344455667777778999999999996 555543 2469999998887543 22233
Q ss_pred ccEEEEEECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCCc--EEEE
Q 001396 391 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVW 464 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~~--i~iw 464 (1086)
+...+++|||||+.|+.. +.+| .|++||+.+++.. .+..+.......+|+|||+. ++..+ .++. |.++
T Consensus 248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRV 321 (433)
T ss_pred CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEE
Confidence 445678999999988754 4444 6999999987643 24455555678999999994 54444 3444 7777
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
|+.+++.. .+..+.......+|+ +||+.|+..+.++ .|.+||+.++.... +. +........|+|||+.++..
T Consensus 322 dl~~g~~~-~lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 322 AASGGSAE-RLTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred ECCCCCeE-EeecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEE
Confidence 87777643 332233334456774 5777887765443 69999998776553 22 22234567999999999887
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
+.. .+...|++++...+ ..+.+..+. +.+...+|+|
T Consensus 397 s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 397 TRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred Eec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence 754 34678999998544 444444333 4566667765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-13 Score=137.53 Aligned_cols=278 Identities=10% Similarity=0.137 Sum_probs=186.4
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE-----CCCCCE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL 404 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~~ 404 (1086)
.+....++-.|++|..--+ ..+.+|+...+..+.. ++.+..+.+ ....|-+| .|+|--
T Consensus 125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence 4556666677777544332 5688898876544431 111112222 23334444 356778
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEec--cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
|..|-.-|.|++.|....+..+ +.... -.+..|+|+.|-|.++. .++.+-.+|.++++|.+ +....
T Consensus 188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8889888999999877633222 11111 23468999999998887 45566779999999862 11112
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
+.-++..-+++..+.....-+. .+..++..+....+.|...+|+|||++||+.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 2222222233333333211110 111334444445558899999999999999987 889999999999888
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec----------------
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---------------- 626 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---------------- 626 (1086)
..++..- +...|++|+|||++|++|++|.-|.||.+..++.+..-.+| ...|..|+|.|
T Consensus 326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~ 400 (636)
T KOG2394|consen 326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDS 400 (636)
T ss_pred HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeecccccccccccccccccc
Confidence 8777766 78999999999999999999999999999999888776544 56788898883
Q ss_pred -------------------CC-------------CEEEEEECCCcEEEEECCCCCee
Q 001396 627 -------------------NG-------------TLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 627 -------------------~~-------------~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
++ -++.+.+.|..+.+||+......
T Consensus 401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 01 24667788999999999876443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=129.11 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=192.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.-++..++|||.|++ |++... ..|.+|+-..+..+..+ ....|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~~-l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGTY-LFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcchh-eehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence 348899999999985 666544 66999998877655331 2257999999999999998
Q ss_pred EeCCC---------------EEEEEEecCCCccccceEecccccc--Ee-EEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 408 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 408 ~~~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+.+ +++-- ....++|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 65433 49999999997665 44444444 45 688999988 44333 2446999997 44
Q ss_pred cee-EEeecC-CcceEEEeecccCCccEEEE-----EEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 470 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 470 ~~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
... ..+..- ...|....++|..++..|+. .+.++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 122111 24567777777766666554 46788999999986666555444444445688899999887533
Q ss_pred e-------CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE--ECCCcEEEEEcCCCeeEEEEcCC
Q 001396 543 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 543 ~-------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
. +.-|+..++++++....+ ....... ++|...+|.|.++.+++. -.+..+.++|++.. ....+...
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence 2 112346788998874433 2222334 899999999999887664 47888999999876 44333322
Q ss_pred CCCCCCceEEEecCCCEEEEEECC---CcEEEEECCCC
Q 001396 614 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES 648 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 648 (1086)
.-+.+.|+|.++++++++-| |.+.+|+....
T Consensus 317 ----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 317 ----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ----ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 13678999999999997765 66788876643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-10 Score=125.73 Aligned_cols=210 Identities=13% Similarity=0.182 Sum_probs=137.1
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEEccC-ceEEEE---E----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001396 798 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS 860 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg 860 (1086)
....++++|++++|+++. +|.+.++++.. +..... + +.......++.|+| +++++++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345688888998888886 68899998876 433222 2 12335678999999 8887776543 35
Q ss_pred eEEEEEcCCce--eE--EEec-cccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECC--CCceeeeeeeeccCCCccCCCC
Q 001396 861 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 861 ~v~iwd~~~~~--~~--~~l~-~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 932 (1086)
.|.+|++.... +. ..+. ........++|+||++++.... .+++|.++++. .+.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 32 2222 2344578899999999886655 57789999998 5544443444433221111125
Q ss_pred ceEEEEecCCCEEEEE--eCCeEEEEEcC--Cccc--eeccccCCccCEEEEEEeCCCCEEEEEEC-CCcEEEEEc--CC
Q 001396 933 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEA--SN 1003 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~~~-Dg~v~vWd~--~~ 1003 (1086)
...++++|||++|.++ ..+.|.+|++. +|.. +..+. ........+.|+|||++|+++.. ++.|.+|++ .+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 7889999999999986 45689999993 3332 22211 12445889999999999998874 568999977 46
Q ss_pred Cceeee
Q 001396 1004 LEVQCR 1009 (1086)
Q Consensus 1004 ~~~~~~ 1009 (1086)
|.+...
T Consensus 326 G~l~~~ 331 (345)
T PF10282_consen 326 GKLTPV 331 (345)
T ss_dssp TEEEEE
T ss_pred CcEEEe
Confidence 666533
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-10 Score=124.79 Aligned_cols=541 Identities=10% Similarity=0.098 Sum_probs=322.2
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
...|++|.....| +|+|+.||.++|-.+.+...-.... -+.+.+...-...+.||.+.|.-+.|+.+.+.|-+..
T Consensus 16 kL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 16 KLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred eEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 6789999998885 9999999999999887643321100 0111122222234899999999999999999999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcceEEEeec
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~ 488 (1086)
.+|.|.||-+-.|.-..... -......|.+++|..||. .+.....||.|.|=.++..+.- +.+++. ....+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w- 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW- 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence 99999999998886554331 234566799999999999 6777778888877664432211 122221 1224455
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCc-------eeE----EecCCCCceEEEEEe--------cCCCEEEEEeeCCCCce
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~d~~~l~~~~~~~~~~~ 549 (1086)
++|.+.++.+-.+|.+.++|.+..= +.. .+...+..+..+.|. ||...++.+.. +|
T Consensus 165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG 239 (1189)
T KOG2041|consen 165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG 239 (1189)
T ss_pred -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence 4566777888888999999865321 101 112222234445542 47778888876 44
Q ss_pred eEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECC---------CcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 550 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 550 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
.+.+..-.+ .+++..-.+ -.+....|+++|..++.++.+ +.|.++. .-|+.+.++...+. .|
T Consensus 240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 555543332 223222222 457888999999999987743 2455554 35677777776644 58
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
++++|-..|-.++.+- |+.|.+=+++..-....+.. .+.+... .++ .
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~------------------------TvVy~y~-~~e-------~ 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEE------------------------TVVYVYQ-KEE-------L 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeee------------------------EEEEEEc-cCC-------C
Confidence 8999988887777654 57777766654322211110 0000000 000 0
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
....|.+||....+.... .-....+++++.+.-.++.-..+|.+.-++.-. ... ++|-.
T Consensus 359 p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le----------~~~--~~~~l 417 (1189)
T KOG2041|consen 359 PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLE----------NRS--RVYFL 417 (1189)
T ss_pred cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhh----------ccc--ceEEE
Confidence 113456677553322111 112334556665555455555555544321000 000 00000
Q ss_pred CCCCceeeecCCC--CCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE----------------------------
Q 001396 780 RHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------------- 829 (1086)
Q Consensus 780 ~~g~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---------------------------- 829 (1086)
..-..+.. ...-..|.-.-+.-++.+++.++...+.+|.....+.
T Consensus 418 -----~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~ 492 (1189)
T KOG2041|consen 418 -----QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRT 492 (1189)
T ss_pred -----eeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhce
Confidence 00000000 0011223333344477788888877888887532110
Q ss_pred ----EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001396 830 ----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 905 (1086)
Q Consensus 830 ----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 905 (1086)
..++.+..++|.+++.+ .+++.++-..|.|.-|.+.+..+..... -+..|.+++..-+...+|...--|.+-
T Consensus 493 l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~t 568 (1189)
T KOG2041|consen 493 LEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVT 568 (1189)
T ss_pred eeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceee
Confidence 12344556778888886 4688899999999999999877766654 455689999988888999888889898
Q ss_pred EEECCCC-ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCcc
Q 001396 906 VWDVDGW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 962 (1086)
Q Consensus 906 iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~ 962 (1086)
+.|+.-. .......+-..+. ..|..+.|..|+..|++ -....++|++-.+.+
T Consensus 569 f~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 569 FQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred eeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 8888721 1111111211111 25888999999887777 455668888765443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=145.92 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=150.7
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEec-c--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-V--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
+......+.+..+.+.+.+.+|||||+. |+..+. + ..|.+||+.+|+... +....+
T Consensus 182 D~dG~~~~~l~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g 240 (427)
T PRK02889 182 DADGQNAQSALSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG 240 (427)
T ss_pred CCCCCCceEeccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence 3334445556677789999999999996 555443 2 359999999887543 222334
Q ss_pred cEEEEEECCCCCEEEE-EeCCCEEEEEEe--cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe--C
Q 001396 392 SVNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--A 466 (1086)
Q Consensus 392 ~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd--~ 466 (1086)
.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+...+....|+|||+.+ +++...++...||. +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEEC
Confidence 5678999999999875 566776666654 4443 22 344555666788999999952 23333445556664 4
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.+++. ..+..+.......+| ++||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+.
T Consensus 316 ~~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 45543 222222233334566 55778888776554 69999998876554332 223467899999999998876
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 583 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 583 (1086)
.+ +...+++.+. ++...+.+..+. +.+...+|+|-
T Consensus 391 ~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 391 QG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred cC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 43 3567888887 455555555444 56677777763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=129.69 Aligned_cols=272 Identities=14% Similarity=0.132 Sum_probs=195.6
Q ss_pred CCCceEeeecCCCceEEEEEe-ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
...|..++|--|++.=+..+. .|..+............. .|++. .......+|..++.. || .|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EEE
Confidence 447888888877754344444 566666666666554432 12221 133345667666664 33 677
Q ss_pred EEeCCCEEEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCC--CcEEEEeCCCCceeEEeecC-----
Q 001396 407 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH----- 478 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d--~~i~iwd~~~~~~~~~~~~h----- 478 (1086)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||.. ..++|||++..+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998543111 11123223 45777777777775 67779988 88999999988665543321
Q ss_pred ----CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 479 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 479 ----~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.-+++++.|.+..+...|++++.-+.+|+||.+.++. +..+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1234566676554478999999999999999987654 5577888889999999999999999876 667999
Q ss_pred EeCCCCeeeeE-EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 554 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 554 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
+|+++++.... +.+.. +.|+++..+|..+++++++-|..+||+|+++.+++........ .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998877 77777 8999999999999999999999999999999887766654433 45555544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-11 Score=127.56 Aligned_cols=288 Identities=12% Similarity=0.123 Sum_probs=188.3
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.......++|++|+ ++|.+. +..|.|++..++..+.+. ....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccc
Confidence 33578889999998 566654 588999999988644321 1137889999999999976
Q ss_pred E-----eCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 408 A-----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 408 ~-----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
= ..+ ..+.+|+++++.... . +..-...-++..|+.|.. ++.--..+.+.+|++..-+.+. -+-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s-~--~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS-Q--IQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh-h--eehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 3 122 347899999953322 1 222112226899999986 3333345679999987643332 223
Q ss_pred CCcceEEEeecccCCccEEEE-----EEcCCeEEEEEcCCCceeEEec---CCCCceEEEEEecCCCEEEEEe-e--CC-
Q 001396 478 HGAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-T--SK- 545 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~-~--~~- 545 (1086)
|...|+.+.+++.+....+++ .+.-+.|++|............ .....-..+.|++-|.-|+... . ++
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 677888888888766556665 3566789999776322211110 0111234567777776544322 1 11
Q ss_pred ----CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 546 ----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 546 ----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
-|+..+++.+++.......+.. .++|+++.|+|+++.+++ |-.-..+.|+|++ +.++..+.. .+-
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpR 314 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPR 314 (566)
T ss_pred CccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCc
Confidence 2456788888874443333332 489999999999987766 5577889999985 455555432 234
Q ss_pred ceEEEecCCCEEEEEECC---CcEEEEECCCCCeeeec
Q 001396 620 PRICFNKNGTLLAVIANE---NRIKILETPESNSVDAA 654 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~ 654 (1086)
+++-|+|.|++++.++-+ |.|.+||+.+.+.+..+
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 789999999999988764 88999999876555443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=144.87 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=146.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
+..+...+.+.+|||||+.||..+.+ ..|++||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999988643 469999999886432 3334455678999999995 344667777766
Q ss_pred EEe--CCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcC--CCceeEEecCCCCceEEEEEecCCCE
Q 001396 463 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 463 iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
||. +.++. ...+..+.+......| ++||+.|+..+. +|...+|.++ .+..... ..........+|+|||++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCE
Confidence 664 44444 5566556655666777 457777776554 4666777654 3332222 222333446789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC---cEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++..+..+ +...|++||+.+++....... .......|+||++.|+.++.++ .+++.+. ++.....+..+.
T Consensus 342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 99776432 345799999988875433222 2335678999999998876544 3555566 455555554332
Q ss_pred CCCCCceEEEec
Q 001396 615 GLPENPRICFNK 626 (1086)
Q Consensus 615 ~~~~v~~v~~s~ 626 (1086)
+ .+...+|+|
T Consensus 415 g--~~~~p~wsp 424 (427)
T PRK02889 415 G--DVREPSWGP 424 (427)
T ss_pred C--CCCCCccCC
Confidence 2 356677776
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-11 Score=125.86 Aligned_cols=333 Identities=14% Similarity=0.159 Sum_probs=210.3
Q ss_pred CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-----EC-----
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD----- 592 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~----- 592 (1086)
..++...+++++|++++.+. +..+.|++..++..+.+... ..+..+.|+|.+.++.+- ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence 34577889999999999886 45689999888764433332 368899999999988762 12
Q ss_pred CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 593 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 593 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
.-.+.+|++.++.....+...... -++..|++|..+.+- -..+.+.+|+..+-+.. ...-|...+..+.++|.+..
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence 234779999996665555443322 257889988764433 23468999998873222 22345667777777764221
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcc---ccccccCCcccccceEEEEEecCCceEEEeecc
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN 749 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 749 (1086)
- .+++ ...-..+.-..+++|......... +..+ -...=..+.|++-|..|++....
T Consensus 180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPVANKSF------FKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred c-------eEEE--------EccCCCCCCcEEEEeccccccccchhhhccc------cccceeEEEeccCCceEEEEEEE
Confidence 1 1111 001123445667888754211111 1111 11112345677666655443221
Q ss_pred ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC---CeEEEEEccC
Q 001396 750 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMT 826 (1086)
Q Consensus 750 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d---g~i~iwd~~~ 826 (1086)
+++......-|+ .++.+.++....+. ..+. ..++|.++.|+|+++-+++..+ .++.|||+.
T Consensus 239 ------dVDktn~SYYGE----q~Lyll~t~g~s~~--V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr- 302 (566)
T KOG2315|consen 239 ------DVDKTNASYYGE----QTLYLLATQGESVS--VPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR- 302 (566)
T ss_pred ------eecCCCcccccc----ceEEEEEecCceEE--EecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-
Confidence 011100001111 12334444422222 2232 5789999999999998888763 789999986
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeC---
Q 001396 827 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG--- 900 (1086)
Q Consensus 827 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--- 900 (1086)
+..+..+ ..++=+++-|+| .|++|+.++-+ |.+.|||+.+.+++..+..-.. +-+.|+|||++++|+..
T Consensus 303 ~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 303 GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecccc
Confidence 5555555 456678999999 88888887755 7999999999999988875443 45799999999999865
Q ss_pred ---CCcEEEEECCC
Q 001396 901 ---DAQIFVWDVDG 911 (1086)
Q Consensus 901 ---dg~i~iwd~~~ 911 (1086)
|..++||++.+
T Consensus 378 lrvdNg~KiwhytG 391 (566)
T KOG2315|consen 378 LRVDNGIKIWHYTG 391 (566)
T ss_pred EEecCCeEEEEecC
Confidence 67799999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-12 Score=143.37 Aligned_cols=232 Identities=15% Similarity=0.103 Sum_probs=154.3
Q ss_pred CCCccceeeeeccCCCCceEeeecCCCceEEEEEec---cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 314 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 314 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
.+......+.+..|...+.+.+|||||++ |+..+. +..|.+||+.+|+... +..+.
T Consensus 187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~ 245 (435)
T PRK05137 187 MDQDGANVRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQREL--------------------VGNFP 245 (435)
T ss_pred ECCCCCCcEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEE--------------------eecCC
Confidence 33344555667788889999999999997 554443 4679999999887542 33455
Q ss_pred ccEEEEEECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CC--CcEEEE
Q 001396 391 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVW 464 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d--~~i~iw 464 (1086)
+.+.+.+|||||+.|+.. +.++ .|++||+.+++.. .+..+.......+|+|||+. ++..+ .+ ..|++|
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVM 319 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEE
Confidence 677889999999988754 4444 4888898887543 35556666778999999995 44443 33 368888
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
|+.+++. +.+..+...+....|+ +||+.|+..+.+ ..|.+||+....... +. ....+..+.|+|||+.|+..
T Consensus 320 d~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt-~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 320 NADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LT-SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ECCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceEe-cc-CCCCCCCCeECCCCCEEEEE
Confidence 9776654 4444344556666674 577788776543 357888876544332 22 22356788999999999876
Q ss_pred eeCCCCc--eeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 542 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 542 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
+...... ..++++|+..+.. +.+.. . ..+...+|+|
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred EccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 6533221 4788999876654 33332 2 3455666765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-08 Score=116.62 Aligned_cols=519 Identities=12% Similarity=0.161 Sum_probs=290.9
Q ss_pred ccEEEEEECCCCCEEEEEeC--CC--EEEEEEecCCCccccceEec-----cccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 391 VSVNRVVWSPDGSLLGVAYS--KH--IVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~--d~--~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
..+...+|.++...+.++.. .. .|.+-....+........+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 46777777776555444332 22 34444433332222222332 2346899999999998 56667778888
Q ss_pred EEE----eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC------------C-Cc--ee------
Q 001396 462 KVW----DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------S-LG--AR------ 516 (1086)
Q Consensus 462 ~iw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------~-~~--~~------ 516 (1086)
.+. |..+.. +.....-...|.+++|+| |++.|+..+.++++.+..-+ . +. .+
T Consensus 100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCce-eEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 888 543332 223334567899999955 66799999999988775321 0 00 00
Q ss_pred --EEecC------------------------CCCceEEEEEecCCCEEEEEeeCCC-C-ceeEEEEeCCCCeeeeEEecc
Q 001396 517 --VDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 517 --~~~~~------------------------~~~~i~~~~~s~d~~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
..+.+ ....-..++|-.||.++++.+.+.. + .+.+++|+-+ |.+..+...-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 00000 1224467899999999998876333 2 5899999965 6655444432
Q ss_pred cccCCceEEEEEecCCCEEEEEEC---CCcEEEEEcCCCeeEEEEcCC--CCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
. +--.+++|-|.|++|++... ...|.+|.. +|-.-..+... .....|..+.|++|+..||+...|. |.+|
T Consensus 256 ~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW 330 (928)
T PF04762_consen 256 D---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW 330 (928)
T ss_pred C---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence 3 44567899999999988653 455777764 44433334332 2334689999999999999988665 9999
Q ss_pred ECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccC
Q 001396 644 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 723 (1086)
Q Consensus 644 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 723 (1086)
...+-.......- .+.
T Consensus 331 t~~NYHWYLKqei--------~~~-------------------------------------------------------- 346 (928)
T PF04762_consen 331 TRSNYHWYLKQEI--------RFS-------------------------------------------------------- 346 (928)
T ss_pred EeeCCEEEEEEEE--------Ecc--------------------------------------------------------
Confidence 8876533222110 000
Q ss_pred CcccccceEEEEEecCC-ceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 724 SKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 724 ~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
....+..+.|+|.. ..+...+.+|.+..+++. |++..+.
T Consensus 347 ---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~------------------- 386 (928)
T PF04762_consen 347 ---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSP------------------- 386 (928)
T ss_pred ---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEecC-------------------
Confidence 01112224555532 234555555666555432 1111111
Q ss_pred Eeec-CCCEEEEEeCCeEEEEEccCceE-----EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----
Q 001396 803 ALSK-NDAYLFSASGGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 872 (1086)
Q Consensus 803 ~~s~-dg~~l~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 872 (1086)
..+| |...+++.++.++.+-.+...-. ...+. ....|.+++|++ ++..+|+-..||.|.+|.......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCccccc
Confidence 0112 22234444445566666543221 12222 347899999999 676788899999999998654321
Q ss_pred ----EEEec----------cccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeeccCCCccCCCCceE
Q 001396 873 ----ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 873 ----~~~l~----------~h~~~v~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
...+. .-...+..++|..+...++....+ ..+.++++...+... .+....... +.+..
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~ 539 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLI 539 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEE
Confidence 11111 123457888998888777766654 578888885432111 111111111 23445
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC---EEEEEECCCcEEEEEcCCCceeeeec
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~---~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
+...++...++. ..+|.+...+..........++. ......++...+.. .++.-+..|.+++ .+..++.
T Consensus 540 ~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~-- 612 (928)
T PF04762_consen 540 ISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS-- 612 (928)
T ss_pred EeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec--
Confidence 555555553444 78888887666543322211211 22233333333333 3443334444443 3333321
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1012 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.+.+++.+ +.+|+.......+++..+.
T Consensus 613 --------------~~tSF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 613 --------------NCTSFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred --------------CCceEEEE---cCEEEEEecCceEEEEECc
Confidence 12344444 3677777888889999997
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-10 Score=118.79 Aligned_cols=366 Identities=11% Similarity=0.149 Sum_probs=226.4
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
.+|...+......+....-++..+++||.|.+|++... ..|.+|+...+..+..+.. ..|..+.|+|+++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK 84 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeec-----CCceecccCcccc
Confidence 34555554444455556668889999999999998763 3499999888776666654 5699999999999
Q ss_pred EEEEEECC---------------CcEEEEEcCCCeeEEEEcCCCCCCCCc-eEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 586 QILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 586 ~l~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
+|.+=+.. ..+.+||..+|..+..+.......... -+.|+.+.+++|-. -...+.|+++...-
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNI 163 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCcc
Confidence 99985533 349999999999999887654322233 68899888877655 33578898863221
Q ss_pred eeeeccc-cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccc
Q 001396 650 SVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 728 (1086)
Q Consensus 650 ~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 728 (1086)
....+.. ....+....++|.+.. ..+..|-
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~~t-------------------- 194 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNH-----------------------------DELAYWT-------------------- 194 (561)
T ss_pred ccCchhhccccceeeEEecCCCCC-----------------------------ceEEEEc--------------------
Confidence 1111110 1122333333321100 0011111
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
|. .....+.+++|.++.++. +.+..+ ....-..+.+.+.|
T Consensus 195 ---------PE-----k~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g 234 (561)
T COG5354 195 ---------PE-----KLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLG 234 (561)
T ss_pred ---------cc-----cCCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCC
Confidence 11 012345556665553321 111111 01111234455555
Q ss_pred CEEEEEe------------CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEEcCCceeEE
Q 001396 809 AYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 809 ~~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd~~~~~~~~ 874 (1086)
.++.+-- ...+.|+++......... ...++|...+|.| .++.+++ |..+-.+-++|++.. +..
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRF 311 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc-eEE
Confidence 5544321 245888888743333332 5678999999999 5554443 357789999999854 444
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE---
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--- 948 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--- 948 (1086)
.+. ...=..+.|||.+++++.++-| |.+.+||..+.- .++..+.+. ..+-+.|||||.++.+.
T Consensus 312 ~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 312 YFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred ecC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCC
Confidence 433 3334568899999999998876 579999988632 233233332 34667899999998772
Q ss_pred ----eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 949 ----HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 949 ----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
.|+.+.|||+...... ..+.+.|-|.|++..+.+.+.
T Consensus 381 ~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 381 EKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred cccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 4678999998754432 456678888898888877765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-10 Score=112.51 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=183.7
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc---ceeEEeeccCCccccCcccccccCCcee
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 777 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 777 (1086)
+..|.+|+++.......... .......++-++++|+++.|.++..+ |.+..|.++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------ 73 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------ 73 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence 46788999874332211111 12255678889999999988887654 6666665543
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccC-ceEEEE--EcCCCCC----------eEE
Q 001396 778 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 842 (1086)
Q Consensus 778 ~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 842 (1086)
.+|.-........ ...+-..++++++|++|+++. .|.|.++-++. |..... ...|.+. +..
T Consensus 74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3333122211111 233347899999999999997 58999999865 433221 1123333 788
Q ss_pred EEEcCCCCCEEEEEeCC-CeEEEEEcCCceeEEEec---cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCC--Ccee
Q 001396 843 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 915 (1086)
Q Consensus 843 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~--~~~~ 915 (1086)
..|.| ++++|++.+-. -.|.+|++..|++...-. .-...-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 89888876532 379999999876532211 23345788999999999877665 89999999987 4444
Q ss_pred eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC--CeEEEEEcCC--ccce-eccccCCccCEEEEEEeCCCCEEEEE
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS 990 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~i~vwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~s~ 990 (1086)
....+..+.....-..+...+.+++||++|.++.. +.|.+|.+.. ++.. ......+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44444333333322346788999999999999754 3688887763 3221 11222334557888999999999999
Q ss_pred ECCC-cEEEEEcC--CCcee
Q 001396 991 FVDG-TLSIHEAS--NLEVQ 1007 (1086)
Q Consensus 991 ~~Dg-~v~vWd~~--~~~~~ 1007 (1086)
..|+ .|.+|..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8765 58888765 44443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-09 Score=114.62 Aligned_cols=204 Identities=11% Similarity=0.091 Sum_probs=131.0
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeE-E-
Q 001396 801 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S- 874 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~- 874 (1086)
.++++|||+++.+.. +..|.+.|+.+++.+.++.... ...-...+. +..+ + -+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~-~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-M-HCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-E-EeecCceEEEEecCCCceEEee
Confidence 578889998888775 5789999999999998887533 222233332 2222 2 23345444433322 2211 1
Q ss_pred --EeccccCCe-EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc---c-CCCCceEEEEecCCCEEE
Q 001396 875 --KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRFL 946 (1086)
Q Consensus 875 --~l~~h~~~v-~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~s~dg~~l~ 946 (1086)
.+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+......+....... . ..+....++++++|+++.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111100110 0014566 8888776665 99999998765544433333321110 0 113455699999999988
Q ss_pred EEe---C--------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceeeeec
Q 001396 947 LVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 947 ~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
+.. . +.|.++|..+++.+..+..+ ..+..++||+||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 732 1 57999999999999887664 5889999999999 777665 57889999999999998884
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-11 Score=118.58 Aligned_cols=340 Identities=14% Similarity=0.184 Sum_probs=205.2
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
..++.++|+. ..++....-|..+-+++.+.|.+++||--. .++.-..+... ....+.++.+.++...|++|-..|
T Consensus 15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecc
Confidence 4456677777 788888888888899999999999999544 44443333322 234688999999999999999999
Q ss_pred cEEEEECCCC----CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCC
Q 001396 639 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 714 (1086)
Q Consensus 639 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~ 714 (1086)
++.-+.+... ...+....|...+..+-|+ ...+++++.+.|..+ .|.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------ 141 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------ 141 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence 9998876643 3334444566666555554 222333443333221 111
Q ss_pred ccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCC
Q 001396 715 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 794 (1086)
Q Consensus 715 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 794 (1086)
.+ ..|..+ .+ | .+.
T Consensus 142 --------------------c~-e~~~~l-----g~----Y-----------------------------~~~------- 155 (404)
T KOG1409|consen 142 --------------------CT-ESGNRL-----GG----Y-----------------------------NFE------- 155 (404)
T ss_pred --------------------ee-ccCCcc-----cc----e-----------------------------Eee-------
Confidence 00 000000 00 0 000
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEE--EccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
..-+++.+.-. +...|. .|.|.+- .......+.++.+|.+.+++++|.+ ..++|.+|..|..+.+||+...+
T Consensus 156 --~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 156 --TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred --ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 00000000000 222222 2333333 2334567788999999999999999 89999999999999999998654
Q ss_pred -eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeee-----eccC--------------------C
Q 001396 872 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-----QTPD--------------------G 925 (1086)
Q Consensus 872 -~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~--------------------~ 925 (1086)
....+.+|.+.|..+...+--+.|++++.||.|.+|+++........-+ +... .
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 3467889999999999988889999999999999999886432221100 0000 0
Q ss_pred CccCC-CCceEEEEecCCCEEEEEeCCeEEEEEcCCccc----eeccccCC--ccCEEEEEEeCCCCEEEEEECCCcEEE
Q 001396 926 VMTLA-PSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 926 ~~~~~-~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~l~fs~dg~~l~s~~~Dg~v~v 998 (1086)
|...- ..+...+-|....+...+.+-.+++.|.--... ...+...| ...|+.+.+-.+-.+|+|+|.|+.|+|
T Consensus 311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKI 390 (404)
T ss_pred hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEE
Confidence 00000 011111122222222224444455554321110 01112234 568999999988899999999999999
Q ss_pred EEcCC
Q 001396 999 HEASN 1003 (1086)
Q Consensus 999 Wd~~~ 1003 (1086)
||+.+
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-10 Score=118.16 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=171.2
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC----------CCEEEEEEec
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH 420 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~ 420 (1086)
++|.+.|..+++.+..... |.... .+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~------------------G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG------------------GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEc------------------cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 8899999999888765221 21111 24 9999999988755 6789999999
Q ss_pred CCCccccceEecc-c---cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE
Q 001396 421 GGSDARQQLEIDA-H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 496 (1086)
Q Consensus 421 ~~~~~~~~~~~~~-h---~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 496 (1086)
+.+.+..+..-.. + ......++++|||+.+++.--+.+..|-+.|+.+++.+.++....... -.. ..+. ..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~---t~e~-~~ 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFP---TAND-TF 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEE---ecCC-cc
Confidence 9887664321000 1 123347899999995333333458999999999999998886432111 111 1111 12
Q ss_pred EEEEcCCeEEEEEcCCCceeE-----EecCCCCce-EEEEEec-CCCEEEEEeeCCCCceeEEEEeCCCC-----eeeeE
Q 001396 497 FSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKRT 564 (1086)
Q Consensus 497 ~s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~~ 564 (1086)
..-+.||......++...... .+.....++ ..-.|++ +|+++.... ++.|++.|+... .....
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 233455555444333322211 111100000 0014456 888887765 467999995432 22322
Q ss_pred Eecc----cccCCceEEEEEecCCCEEEEEE----------CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC-
Q 001396 565 YQGL----QLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT- 629 (1086)
Q Consensus 565 ~~~~----~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 629 (1086)
+... ........-+++++++++++... ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 2211 11123444599999999998843 22579999999999999987643 478999999999
Q ss_pred EEEEEE-CCCcEEEEECCCCCeeeec
Q 001396 630 LLAVIA-NENRIKILETPESNSVDAA 654 (1086)
Q Consensus 630 ~l~~~~-~dg~i~iw~~~~~~~~~~~ 654 (1086)
+|++.. .++.|.++|..+++.+..+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777766 5788999999999888776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-11 Score=125.09 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=189.5
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC--cceEEEeecccCCccEEEEEEcCCeEEEEEc
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLY 510 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~ 510 (1086)
+|...-+.|..+|||++ ++++|...-.|++||+..-... |..|. ..|.-..+ +.|-..++.-..|.+|.+-..
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL--sDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL--SDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe--ccchhhheEeecCceeeehhh
Confidence 46667788999999997 7888988999999998765543 32332 22332222 223334555556666654321
Q ss_pred CCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE
Q 001396 511 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 590 (1086)
Q Consensus 511 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 590 (1086)
- ........ ......++++.-.--|++++. ...|+-+++..|+.+..+.... +.++++..++....|++|
T Consensus 124 ~--G~hy~~RI-P~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 124 Y--GRHYRTRI-PKFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACG 193 (703)
T ss_pred c--Ceeeeeec-CcCCccccccCCCccEEEeec----CcceEEEEcccccccccccccc---ccceeeeecCccceEEec
Confidence 1 11111111 112234555443333333333 2249999999999999998876 899999999999999999
Q ss_pred ECCCcEEEEEcCCCeeEEEEcCCC---------CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec-cccccc
Q 001396 591 GDDHVIKIWDMNKVQLLTTIDAGG---------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDN 660 (1086)
Q Consensus 591 s~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~ 660 (1086)
+.+|.|..||.++......+.... ..+.|+++.|+.+|-.+++|+.+|.+.|||+...+++..- .+..-+
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 999999999999887776664332 2345899999999999999999999999999988766443 233445
Q ss_pred eeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCC
Q 001396 661 LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG 740 (1086)
Q Consensus 661 v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 740 (1086)
|..+.|.+. .++..+++ .....+++||-..+++..... ....+..+++-|++
T Consensus 274 i~~l~~~~~--------------------~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~s 325 (703)
T KOG2321|consen 274 IKKLDWQDT--------------------DQQNKVVS-MDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGS 325 (703)
T ss_pred eeeeccccc--------------------CCCceEEe-cchHHhhhcccccCCceeecc-------ccCCcCceeeecCC
Confidence 665666431 11233333 344789999987665543221 34558889999999
Q ss_pred ceEEEeeccceeEEeecc
Q 001396 741 QAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 741 ~~l~~~~~dg~i~vw~~~ 758 (1086)
-.++++-.++.+..|=++
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 988888888766655443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=128.38 Aligned_cols=228 Identities=13% Similarity=0.098 Sum_probs=141.9
Q ss_pred ecCCCccEEEEEECCCCCEEE---EEeCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC---
Q 001396 386 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--- 457 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~--- 457 (1086)
+......+..-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|||||+++ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 334556677889999998633 33333 368888998876432 33344455678999999953 333322
Q ss_pred -CCcEEEEeCCCC---ceeEEeecCCcceEEEeecccCCccEEEEEE-cCCeEEEEEc--CC-CceeEEecCCCCceEEE
Q 001396 458 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 458 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~ 529 (1086)
|-.+.+|++.++ +......++.+.....+| ++||+.|+..+ .+|...+|.+ .. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 333455777653 333333222233455667 55777777655 4676556644 32 22233344444566788
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC---CCcEEEEEcCCCee
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL 606 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~ 606 (1086)
.|+|||+.|+..... .+...|++||+.+++......+ . ..+....|+|||+.|+..+. ...|+++|+.+++.
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999999999987643 3456899999998876544332 2 35677899999998876443 35688999988776
Q ss_pred EEEEcCCCCCCCCceEEEecCC
Q 001396 607 LTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.......+ .+...+|+|-.
T Consensus 408 ~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 408 RKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred EEeecCCC---cccCceecCCC
Confidence 55443222 35667787743
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-10 Score=116.72 Aligned_cols=318 Identities=14% Similarity=0.184 Sum_probs=193.9
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-----------CC
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 593 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d 593 (1086)
.-+-+.|||.|.+|++-... -|.+|--.+...++.|.. ..|.-+.|||+.+||++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-----GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-----GIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEecc-----ceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 34678999999999998743 389998777666666653 4688999999999999854 22
Q ss_pred CcEEEEEcCCCeeEEEEcCCCC-CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 594 HVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
..+.|||+.+|.....+..... ...-.-..||.|++++|.-.. .+|.||+...-..+..-..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc----------------
Confidence 5699999999999988876322 223345789999999988776 4688887664222211100
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecccee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 752 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 752 (1086)
....|....|+|.+..|+--+..
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwtpe--- 367 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWTPE--- 367 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEccc---
Confidence 11234555566654433322111
Q ss_pred EEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEE
Q 001396 753 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 832 (1086)
Q Consensus 753 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~ 832 (1086)
+.. .. ..+.+..+.+++.+++
T Consensus 368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 000 00 1123333333333333
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEE----------eCCCeEEEEEcCCcee-EEEeccccCCeEEEEEeCCCCEEEEEeC-
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG- 900 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~s~s~- 900 (1086)
..-+.-.=..+-|-. .|.+|+.- +.=..+.|+.+..... +..+. -...|...+|-|.|..+++.+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence 222221112233433 44444432 1112456666655432 22222 4567888999999988877654
Q ss_pred --CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE----EeCCeEEEEEcCCccceeccccCCccC
Q 001396 901 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPISSVP 974 (1086)
Q Consensus 901 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~~d~~i~vwd~~~~~~~~~~~~~h~~~ 974 (1086)
..++.+|.+++. ......+..+... ....+.|||.|+++++ +..|.+..+|+.-..+...-...| ..
T Consensus 467 ~~k~tvsfY~~e~~-~~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~ 539 (698)
T KOG2314|consen 467 TVKNTVSFYAVETN-IKKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA 539 (698)
T ss_pred ccccceeEEEeecC-CCchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence 357899988852 2223344444432 3578999999999987 356889999988534333212223 35
Q ss_pred EEEEEEeCCCCEEEEEECCC
Q 001396 975 ISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 975 v~~l~fs~dg~~l~s~~~Dg 994 (1086)
.+.+.|.|.|+|++|++.-.
T Consensus 540 at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccceECCCCCEEEEeeehh
Confidence 57789999999999998644
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=130.05 Aligned_cols=235 Identities=11% Similarity=0.049 Sum_probs=145.7
Q ss_pred eeeeccCCCCceEeeecCCCceE--EEEEecc--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTL--LLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~l--la~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
.+.|..+...+..-+|||||+.+ +.+...+ ..|.+.++.+|+... +....+.....
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p 236 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMP 236 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccce
Confidence 34455555567788999999752 2344444 358888888886543 22233445678
Q ss_pred EECCCCCEEEEEeC-CC----EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE--eCCC-
Q 001396 397 VWSPDGSLLGVAYS-KH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVT- 468 (1086)
Q Consensus 397 ~~spdg~~las~~~-d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw--d~~~- 468 (1086)
+|||||+.||..+. +| .+.+|++.++..-.......++.+.....+|+|||+.+ +++...++...+| ++..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L-af~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL-VFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECccc
Confidence 99999999998753 22 34457776532111111122233345678999999952 3333345654555 5432
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.....+..+...+....| ++||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.....
T Consensus 316 g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~- 391 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN- 391 (428)
T ss_pred ccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-
Confidence 3334555555556666777 4577777766543 468999998877654433 23456778999999998876543
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
.+...|+++|+.+++......+ . +.+...+|+|-.
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 3467899999988876554432 2 456667787753
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=132.86 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=145.6
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEecc--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
...+.+..+.+.+...+|||||++|+.+...+ ..|.+||+.+|+... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 33455666777899999999999754444333 368999999886543 22223445578
Q ss_pred EECCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCce
Q 001396 397 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR 471 (1086)
Q Consensus 397 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~ 471 (1086)
+|||||++|+.. +.++ .|++||+.+++.. .+..+........|+|||+.+ +++...++ .|+++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCE
Confidence 999999998854 3444 6888899887532 244555567778999999952 33333333 588888888875
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcC-C--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.. +...........| +++|+.++..+.+ + .|.+||+.+++....... .......|+|||+.++..... .+.
T Consensus 324 ~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 324 ER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred EE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence 33 2212222233456 4566777766543 3 578889887765443222 222356899999999887653 345
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
..|++++...+ ..+.+..+. +.+...+|+|
T Consensus 398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence 67888887543 333444333 4566666765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-09 Score=113.85 Aligned_cols=248 Identities=15% Similarity=0.202 Sum_probs=161.3
Q ss_pred ccEEEEEECCCCCEEEEEeC----CCEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 391 VSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.....++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|+|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEE
Confidence 55677999999999999866 578999999875 333333333333445678999999994 334444689999999
Q ss_pred CCC-CceeEE---ee----------cCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcCCCce-e---EEe-cCCCCc
Q 001396 466 AVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGLG 525 (1086)
Q Consensus 466 ~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~-~---~~~-~~~~~~ 525 (1086)
+.. |..... +. .......++.+ +++++++++.. ....|.+|+++.... . ..+ ...+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 987 443322 21 11234566777 45667766654 456899999987652 1 122 344557
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCC--CCee--eeEEeccc---ccCCceEEEEEecCCCEEEEEE-CCCcEE
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVIK 597 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i~ 597 (1086)
...++|+|+++++++... ..+.|.++++. ++.. +....... ........++++|||++|+++. ..+.|.
T Consensus 194 PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 889999999999988764 35568777777 4432 22222211 1112578899999999998865 567899
Q ss_pred EEEcC--CCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CCcEEEEECC
Q 001396 598 IWDMN--KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP 646 (1086)
Q Consensus 598 iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 646 (1086)
+|++. +++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99994 333 3334443222 3588999999999998875 5789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=113.18 Aligned_cols=357 Identities=14% Similarity=0.199 Sum_probs=213.3
Q ss_pred cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-----eeEEeecCC------------cceEEEeecccCCccEEE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 497 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 497 (1086)
.+-|.++.|..+|. +|++|..+|.|.++.-+... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45688999999999 89999999999999644322 223444453 357778888888888999
Q ss_pred EEEcCCeEEEEEcCCCceeE-----EecCCCCceEEEEE---ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 498 SISVDGKIKAWLYDSLGARV-----DYDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 498 s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
..+.|.+|++|.+....... ........++++.. .+....+. ..+.+.+..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-- 161 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-- 161 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence 99999999999887654433 11111222222221 11111111 112233322
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-eeEEEEcCCC-----CCCCCceEEEec-CCCEEEEEECCCcEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGG-----GLPENPRICFNK-NGTLLAVIANENRIKI 642 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~-----~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 642 (1086)
.|...|+++.++.|...++++. |=.|.+|+++-- +......... -...|++..|+| ..+.++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 2347899999999998888764 567999998732 2222222111 112467888999 4567788888999999
Q ss_pred EECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccccc
Q 001396 643 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 722 (1086)
Q Consensus 643 w~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 722 (1086)
-|++....-.. .-+++..
T Consensus 241 cDmR~~aLCd~-------------------------------------------------hsKlfEe------------- 258 (433)
T KOG1354|consen 241 CDMRQSALCDA-------------------------------------------------HSKLFEE------------- 258 (433)
T ss_pred eechhhhhhcc-------------------------------------------------hhhhhcc-------------
Confidence 99884321110 0001100
Q ss_pred CCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEE
Q 001396 723 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 802 (1086)
Q Consensus 723 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l 802 (1086)
|. .|..+- ... +--..|..+
T Consensus 259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv 278 (433)
T KOG1354|consen 259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV 278 (433)
T ss_pred cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence 00 000000 000 123457778
Q ss_pred EeecCCCEEEEEeCCeEEEEEcc-CceEEEEEcCCC------------CCe---EEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001396 803 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 803 ~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd 866 (1086)
.|+++|+++++-+--+|++||+. ..+.+.+.+-|. +.| ..++|+- ++.++++|+....+++++
T Consensus 279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence 88888888888777889999883 455555554443 222 4678998 888999999999999999
Q ss_pred cCCceeE-EEeccccCC--eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCC
Q 001396 867 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 943 (1086)
Q Consensus 867 ~~~~~~~-~~l~~h~~~--v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 943 (1086)
+..|... .++...... ...+ ..-+.+.+++......+|-.. .+-. ..+...+|.|...
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf~----kkilh~aWhp~en 418 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDFR----KKILHTAWHPKEN 418 (433)
T ss_pred CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhhh----hHHHhhccCCccc
Confidence 8766432 333332222 1111 112334444444332222110 0000 1367889999999
Q ss_pred EEEEEeCCeEEEEE
Q 001396 944 RFLLVHETHLAIYE 957 (1086)
Q Consensus 944 ~l~~~~d~~i~vwd 957 (1086)
.+|++.-+.+++|.
T Consensus 419 ~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 419 SIAVAATNNLYIFQ 432 (433)
T ss_pred eeeeeecCceEEec
Confidence 99998777787763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=132.43 Aligned_cols=227 Identities=14% Similarity=0.104 Sum_probs=142.0
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccC--cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+.+..+...+....|||||++++.+...++ .|.+||+.+|+.... ....+.....+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~w 269 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRF 269 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeE
Confidence 3455666778999999999997544443333 588899988865321 111223446899
Q ss_pred CCCCCEEEEE-eCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeE
Q 001396 399 SPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTY 473 (1086)
Q Consensus 399 spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~ 473 (1086)
||||+.||.. +.++ .|++||+.+++.. .+..+.......+|+|||+.+ +++...++ .|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~I-~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKSL-IFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE
Confidence 9999988764 4555 4888888877532 244555567789999999952 33333333 57777888777543
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
+..........+| ++||++|+..+. ++ .|.++|+.++........ .......|+|||+.|+..... .+...
T Consensus 345 -Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~-~g~~~ 418 (448)
T PRK04792 345 -LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTY-QGKQV 418 (448)
T ss_pred -EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEec-CCceE
Confidence 2222222334566 456667766554 44 355567766654332221 122345899999999887653 34567
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
+++++. +|...+.+..+. +.+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence 888887 455555565444 4566677776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-10 Score=128.89 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=142.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--c
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~ 460 (1086)
+..+...+...+|||||+.||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999887644 469999999876432 2333445567999999995 333454454 6
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
|.+||+.+++.. .+..+........|+ +||..++..+. +| .|.++++.+++..... ..........|+|||+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence 888899887653 455555555566674 46666665553 33 5777777666543322 22233445789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++..... ++...|.+||+.+++....... . ......|+|||+.++..+.+ ..++++++.. .....+....
T Consensus 345 i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQ-DGNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ 417 (430)
T ss_pred EEEEEcc-CCceEEEEEECCCCCEEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence 9887643 2355799999998865332222 1 12245899999999886643 3467777754 3333443322
Q ss_pred CCCCCceEEEec
Q 001396 615 GLPENPRICFNK 626 (1086)
Q Consensus 615 ~~~~v~~v~~s~ 626 (1086)
..+...+|+|
T Consensus 418 --g~~~~p~ws~ 427 (430)
T PRK00178 418 --GEVREPSWSP 427 (430)
T ss_pred --CCcCCCccCC
Confidence 2355666765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-09 Score=106.59 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=172.1
Q ss_pred CCCCeeEEEeecCCCEEEEEe----CCeEEEEEccC--ceEE--EEEcCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD-STILIY 865 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g~v~iw 865 (1086)
.....+-++++|+++.|.++. +|.|..|.+.. |+.. ........+-+.+++++ ++++|+++... |.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999988885 36788887764 4442 22222333448899999 89898888654 799999
Q ss_pred EcCC-ceeE--EEeccccCC----------eEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 866 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 866 d~~~-~~~~--~~l~~h~~~----------v~~l~~spdg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
-+.. |.+. .....|.+. +....|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9965 4332 122335555 88899999999999874 565 9999999877555444444333
Q ss_pred CCceEEEEecCCCEEEEE--eCCeEEEEEcCCc-cceeccc------cC--CccCEEEEEEeCCCCEEEEEEC-CCcEEE
Q 001396 931 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWF------PI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 998 (1086)
Q Consensus 931 ~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~-~~~~~~~------~~--h~~~v~~l~fs~dg~~l~s~~~-Dg~v~v 998 (1086)
...+.|+|+|++++.-+. -+++|.+|.+... ..+..+. .. -......+..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999987763 5789999998863 1121111 11 1567788999999999997643 236888
Q ss_pred EEcCCCce-eeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-cEEEEccCCCCCCC
Q 001396 999 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1061 (1086)
Q Consensus 999 Wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg-~v~vw~~~~~~~~~ 1061 (1086)
+.++...- +..+. +.+ .....|..+.++| ++++|+++..++ .|.++.+...-..+
T Consensus 271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEcCCCCEEEEEE---Eec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 87765422 22222 111 1234577889999 677777777664 79999987666543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-10 Score=127.74 Aligned_cols=223 Identities=15% Similarity=0.105 Sum_probs=141.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-- 460 (1086)
+..+...+.+.+|||||++|+..+.+ ..|++||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34466788999999999999987543 368999998876422 2222333457899999996 3344566664
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
|.++|+.+++. ..+..+.......+|++ |++.|+..+. ++ .|.++|+.+++..... .........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCE
Confidence 78889887764 44544555566677754 6666665543 44 4666677665543322 22223345789999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-C--cEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++..+.. .+...|.++|+.+++... +.... ......|+|+|++|+..+.+ + .+++++. +|.....+....
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9887653 234578889988886533 22211 12234799999998876543 3 3777776 455555555432
Q ss_pred CCCCCceEEEec
Q 001396 615 GLPENPRICFNK 626 (1086)
Q Consensus 615 ~~~~v~~v~~s~ 626 (1086)
+ .+...+|+|
T Consensus 437 g--~~~~p~Wsp 446 (448)
T PRK04792 437 G--EVKSPAWSP 446 (448)
T ss_pred C--CcCCCccCC
Confidence 2 356677776
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-10 Score=117.32 Aligned_cols=333 Identities=13% Similarity=0.187 Sum_probs=197.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----------Cc
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------KT 460 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----------~~ 460 (1086)
.=+.+.|||-|.||++--..| |.+|--.+-..++ .+ .|.+ |.-+.|||..+ +|||-+.. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence 345799999999999997777 9999755433333 23 4654 88999999999 78887632 45
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
++|||+.+|...+.|....+ ..-.| .-..||.|++++|.
T Consensus 284 l~IWDI~tG~lkrsF~~~~~-----------------------~~~~W------------------P~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKS-----------------------PYLKW------------------PIFRWSHDDKYFAR 322 (698)
T ss_pred EEEEEccccchhcceeccCC-----------------------Ccccc------------------ceEEeccCCceeEE
Confidence 77788877777766642211 11112 12578899999887
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC-----CCcEEEEEcCCCeeEEEEcCCCC
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-----DHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
-.. ..|.||+..+..++.. ....-..|....|+|.++.|+.-+. -..+.+-.+.+++.+.+...+.-
T Consensus 323 m~~-----~sisIyEtpsf~lld~---Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 323 MTG-----NSISIYETPSFMLLDK---KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred ecc-----ceEEEEecCceeeecc---cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 653 3588888766443322 2222367888999999887776332 23466667777776666554321
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
.-..+-|-.+|.+|++--.. ..... ..+..
T Consensus 395 --sDckLhWQk~gdyLcvkvdR-------~tK~~-------~~g~f---------------------------------- 424 (698)
T KOG2314|consen 395 --SDCKLHWQKSGDYLCVKVDR-------HTKSK-------VKGQF---------------------------------- 424 (698)
T ss_pred --eccEEEeccCCcEEEEEEEe-------ecccc-------ccceE----------------------------------
Confidence 11345666778777653221 00000 00000
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc---ceeEEeeccCCccccCccccccc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKV 772 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 772 (1086)
..+.++.+...+ +......-...|-..+|-|.|..+++.+.+ .++.+|.+....
T Consensus 425 ------~n~eIfrireKd------Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------- 481 (698)
T KOG2314|consen 425 ------SNLEIFRIREKD------IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------- 481 (698)
T ss_pred ------eeEEEEEeeccC------CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------
Confidence 111222221110 000001123567888999999988877654 445555443210
Q ss_pred CCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe----CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC
Q 001396 773 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH 848 (1086)
Q Consensus 773 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 848 (1086)
+..-+...+ .....+.+.|+|.|++++.+. .|.+..+|+.-......-.......+.+.|.|
T Consensus 482 ---------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP- 547 (698)
T KOG2314|consen 482 ---------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP- 547 (698)
T ss_pred ---------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-
Confidence 000111111 234567899999999999885 57899999875333333333334668899999
Q ss_pred CCCEEEEEeCCC------eEEEEEcC
Q 001396 849 DNNVIAIGMDDS------TILIYNAR 868 (1086)
Q Consensus 849 d~~~lasg~~dg------~v~iwd~~ 868 (1086)
.|+++++++.-. --++|+++
T Consensus 548 tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 548 TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCEEEEeeehhhhccccceEEEEee
Confidence 999999987643 34555554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-11 Score=116.24 Aligned_cols=266 Identities=12% Similarity=0.207 Sum_probs=177.0
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeec-cccceeeeeeeecCCCccEEEEEECCCCC--
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI-GACSMLFKTALVRDPGVSVNRVVWSPDGS-- 403 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~spdg~-- 403 (1086)
..+-|.+|.|..+|.+ ||+|..+|.|.++.-..... . .++.+.. ....+.|....--.-+..|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccce-EeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 3468999999999995 99999999999997543221 0 1111100 00011111111112246799999998764
Q ss_pred EEEEEeCCCEEEEEEecCCCccc------------------c--------------ceE-eccccccEeEEEecCCCCcE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~v~~s~d~~~l 450 (1086)
.+...+.|.+|++|.+......+ . ... -.+|..-|.++.++.|+.
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-- 177 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-- 177 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--
Confidence 45666789999999986532211 0 001 136788899999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCceeE---Eeec-----CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTY---SFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VD 518 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~---~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~ 518 (1086)
.++++. |=.|.+|+++--..-. .++. -...|++..|+|.. ...++-.+..|+|++.|++....- ..
T Consensus 178 t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 677665 8889999987433222 2222 23467888888764 457888889999999999843211 11
Q ss_pred ecCC------------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC-CCCeeeeEEeccccc---------CCce-
Q 001396 519 YDAP------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNSV- 575 (1086)
Q Consensus 519 ~~~~------------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~v- 575 (1086)
+..+ -..|..+.|+++|+++++-. -..|.+||+ ...+++.+++.|..- ...|
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 1111 12578899999999999864 357999999 456777777766521 1222
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 576 --SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 576 --~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
..++|+.++.++++|+....+++++...|.
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 357899999999999999999999966543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-10 Score=129.00 Aligned_cols=210 Identities=15% Similarity=0.084 Sum_probs=139.3
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--c
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T 460 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~ 460 (1086)
+..+...+...+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566778999999999999988644 479999999875332 3345566778999999995 334444444 5
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
|++||+.++.. ..+..+........|+ +|++.|+..+. ++ .|.++|+.+++.. .+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 88999888764 3444454445556664 47777766654 33 5777787765533 33334456678899999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC---cEEEEEcCCCeeEEEEc
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 611 (1086)
++...... +...|.+||+.++... .+... .......|+|++++|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887533 3557999999886543 22221 1234567999999998876544 3555554 344444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-10 Score=131.27 Aligned_cols=214 Identities=19% Similarity=0.142 Sum_probs=141.5
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
...+.+..+...+...+|||||++ ||.++.+ ..|.+||+.+++... +..+...+.+
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~ 238 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA 238 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence 334556667778999999999997 4544432 479999999886543 2234456778
Q ss_pred EEECCCCCEEEEE-eCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCC--cEEEEeCCCC
Q 001396 396 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG 469 (1086)
Q Consensus 396 l~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~--~i~iwd~~~~ 469 (1086)
++|+|||+.|+.. +.+ ..|++||+.+++.. .+..+........|+|||+. |+..+ .++ .|.++|+.++
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence 9999999988754 333 35889999876532 23445555667899999994 44433 233 5888898777
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+. ..+..+...+....|+ +++.+++.++.++ .|.+||+.++...... .. .......|+|||+.|+.....+
T Consensus 313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeCC-
Confidence 64 3444455556666774 4677888887776 7888998875443322 21 2334568999999998877533
Q ss_pred CceeEEEEeCCCCeeeeEEe
Q 001396 547 GESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~ 566 (1086)
+...+++.+.. +.....+.
T Consensus 387 ~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 387 GRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CcEEEEEEECC-CceeeECC
Confidence 34567777644 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-10 Score=113.79 Aligned_cols=162 Identities=19% Similarity=0.334 Sum_probs=114.9
Q ss_pred EEEEECCCCCEEEEEeC----------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 394 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
..+.|+|+|++|+.-.. -+...+|.++..........+ ...++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998876533 134666666443322221122 2345799999999999766666777889999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
||++ ++.+..+. ...++.+.|+ |+|++|++++.+ |.|.+||.++.+.+..... ..++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEE
Confidence 9986 77777764 5677888885 477899988754 6799999997666655443 35789999999999999
Q ss_pred EeeC--CCCceeEEEEeCCCCeeeeE
Q 001396 541 CGTS--KEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 541 ~~~~--~~~~~~i~iwd~~~~~~~~~ 564 (1086)
+... -..+..+.||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8753 1245678999975 555443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=119.60 Aligned_cols=358 Identities=15% Similarity=0.137 Sum_probs=229.3
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE--EecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
..++.++||.+.++....-+..+ -+++.+.|.++|+|--+...+.. .......+++++.+.++.+.|+.+-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---- 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---- 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence 34567789999898887766555 59999999999999554433322 22334557899999999999999876
Q ss_pred ceeEEEEeCC----CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 548 ESFLVEWNES----EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 548 ~~~i~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
.+.+.-+.+. .....+.+..|. ..+..+-|+....++++.+.|..+.---.+.+..+........ ..++.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~ 162 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ 162 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence 4556666443 445566667777 8999999999999999999988775544555554433322111 11112
Q ss_pred EecCCCEEEEEECCCcEEEEECC--CCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 624 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
+.-. +..+|...|.|....+. .-..+..+.+|.+.+.++.+. +....+.++..|
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d 218 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD 218 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence 2111 55666666777766554 346788899999999999997 567789999999
Q ss_pred CccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc-----cccCCce
Q 001396 702 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT-----TKVPPRL 776 (1086)
Q Consensus 702 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~~ 776 (1086)
..+.+||+.......... .+|...|..+...+--+.+++++.||.|.+|+++........... .-..+..
T Consensus 219 ~~vi~wdigg~~g~~~el-----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff 293 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYEL-----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF 293 (404)
T ss_pred CceEEEeccCCcceeeee-----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence 999999987554443332 458888999998888999999999999999999876543222221 1123344
Q ss_pred ecCCCCCceeeecCCCC--CC-CCCeeEEEeecCCCEEEEEeCCeEEEEEcc-------CceEEEEEcCCCCCeEEEEEc
Q 001396 777 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN 846 (1086)
Q Consensus 777 ~~~~~g~~~~~~~~~~~--~~-~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s 846 (1086)
|+...........+... .+ ...+...+-+.-..+...+..-.+|+-|.- +...+..+......|+++.+.
T Consensus 294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq 373 (404)
T KOG1409|consen 294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ 373 (404)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence 44322110111111000 01 112222222222222222323344544431 112233443444678999998
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Q 001396 847 PHDNNVIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 847 ~~d~~~lasg~~dg~v~iwd~~~ 869 (1086)
. .-.+|++++.|..|+|||+..
T Consensus 374 e-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 E-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred h-hccceeecCCceEEEEEechh
Confidence 8 667999999999999999874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=115.34 Aligned_cols=251 Identities=10% Similarity=0.126 Sum_probs=183.7
Q ss_pred CCccEEEEEECCCCC--EEEEEeCCCEEEEEEecCCCccccc---eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 389 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQ---LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 389 h~~~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~---~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
....|..++|.-|++ .|..++.+..+....+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888876654 4555556667777777766544321 1223445667777665 44 5888899999999
Q ss_pred EeCCCCc----eeEEeecCCcceEEEeecccCCccEEEEEEcC--CeEEEEEcCCCceeEEecCCCC---------ceEE
Q 001396 464 WDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGL---------GCTR 528 (1086)
Q Consensus 464 wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~---------~i~~ 528 (1086)
|..+.+. .+..+..+ ..+..+.-++. ....+++|+.. ..+.+||+...+.++.-..... .++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9988543 23333333 34444443322 33467779999 8899999998865554433222 4678
Q ss_pred EEEecC--CCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 529 MAYSAN--GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 529 ~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+.|-+. ...+++++. -+++++||.+.+ +++..+.... .++.++...|.++++++|..-|.+..||.+.++
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE---NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc---CcceeeeecCCCcEEEEecccchhheecccCce
Confidence 889887 888999886 678999999865 5667776666 899999999999999999999999999999999
Q ss_pred eEEE-EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 606 LLTT-IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 606 ~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.... +.+- ...+.++..+|.++++++++-|..++|+|+++...+...
T Consensus 281 l~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 281 LLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8877 5443 345899999999999999999999999999986555443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-10 Score=118.44 Aligned_cols=194 Identities=12% Similarity=0.183 Sum_probs=155.9
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEec------C------------CCCcEEEEEEeCCCc
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT 460 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s------~------------d~~~l~l~s~~~d~~ 460 (1086)
.|-+.|+|....||.++|||+..++..........-++.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3457799999999999999999987544332222233344444442 2 123337888999999
Q ss_pred EEEEeCCCCceeEEee--cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEE
Q 001396 461 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 538 (1086)
|.++++..|+....+. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888875 599999999874 355689999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-----CCEEEEE-ECCCcEEEEEcCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK 603 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 603 (1086)
++++. +|.+||+++++.+..|.||. ++|+++.|..+ |.+++++ ..+..+.+|-+..
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98854 69999999999999999999 99999999887 7777774 4556677886654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-10 Score=110.47 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=112.1
Q ss_pred eEEEecCCCCcEEEEEEe--------CCCcEEEEeCC-CCceeEEeec-CCcceEEEeecccCCccEEE--EEEcCCeEE
Q 001396 439 NDLAFSAPCKQISVITCG--------DDKTIKVWDAV-TGSRTYSFEG-HGAPVYSLCPHAKENIHFIF--SISVDGKIK 506 (1086)
Q Consensus 439 ~~v~~s~d~~~l~l~s~~--------~d~~i~iwd~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~--s~s~dg~i~ 506 (1086)
..+.|+++|+.+++.+.. .-+...+|-++ .+.....+.- ..++|.+++|+|+ |..++ .|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccE
Confidence 357899999975444441 12234555542 2334444433 3457999999764 44543 445678999
Q ss_pred EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE
Q 001396 507 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 586 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 586 (1086)
+||++ ...+..+ ....+..+.|+|+|+++++++.+ ...+.|.+||.++.+.+..... ..+..++|+|+|++
T Consensus 87 lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 87 LYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSPDGRY 157 (194)
T ss_pred EEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCCEEeecccc-----CcEEEEEEcCCCCE
Confidence 99996 3444443 45677889999999999998753 2357899999998888776653 45789999999999
Q ss_pred EEEEE------CCCcEEEEEcCCCeeEEEEc
Q 001396 587 ILAAG------DDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 587 l~~~s------~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++++ .|+.++||+.. |+.+....
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99976 47889999984 66655543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-08 Score=113.04 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=113.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
.++.++.++.+..+|..+|+.+............... ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888999999999999998776544332222222 345788899999999999999888776654432221122
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce-----EEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
. .+..++.+.. ++.++.||..+|+.+-.+.... ..+ .+.... +..++.+..+|.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2344555443 6779999999998877665432 111 111121 2467888889999999999998
Q ss_pred eEEEEcCCCCC--CCC---ceEEEec--CCCEEEEEECCCcEEEEECCCC
Q 001396 606 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 606 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.+......... ..+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 77654322110 000 0000011 2445666666777777766554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-09 Score=113.41 Aligned_cols=189 Identities=14% Similarity=0.222 Sum_probs=147.6
Q ss_pred cCCCEEEEEe-CCeEEEEEccCceEEEEEcCC---CCCeEEEEEc------C-------------CCCCEEEEEeCCCeE
Q 001396 806 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAFN------P-------------HDNNVIAIGMDDSTI 862 (1086)
Q Consensus 806 ~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~s------~-------------~d~~~lasg~~dg~v 862 (1086)
|-..++|... ||.+++|+...++....+... .+..++..|. | .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 799999999999888777532 2233333331 1 155688889999999
Q ss_pred EEEEcCCceeEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 863 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.+|+...|+....+. .|.+.|.++.++.+-..|.|++.|+.+..|+..... .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 599999999999999999999999999999998743 3333333332 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCC-----CCEEEE-EECCCcEEEEEcCCC
Q 001396 941 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASNL 1004 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~s-~~~Dg~v~vWd~~~~ 1004 (1086)
||+.|+++ .++|++||+++++.+.. ++||.++|..+.|..+ |.++++ ...+.-+.+|-+...
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99988764 47899999999999987 7899999999999887 666654 445566888887663
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-08 Score=107.79 Aligned_cols=267 Identities=14% Similarity=0.099 Sum_probs=169.7
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.+|.|.-+|..+|+.+-...+. + ......+ .++..+++++.++.++.+|..+|+
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLD-----------------E--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCC-----------------C--CcccceE--EcCCEEEEEcCCCEEEEEECCCCc
Confidence 677788899999999999987543321 1 1011122 257788888899999999999988
Q ss_pred ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE-----EEeecccCCccEEEE
Q 001396 424 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-----SLCPHAKENIHFIFS 498 (1086)
Q Consensus 424 ~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~l~s 498 (1086)
.+... .. .+.+.+.-.. .+. .++.++.++.+..||.++|+.+..+......+. +..+ . + ..++.
T Consensus 127 ~~W~~---~~-~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~~v~~ 195 (377)
T TIGR03300 127 ELWRA---KL-SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-GGVLV 195 (377)
T ss_pred Eeeee---cc-CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-CEEEE
Confidence 65422 11 1222211111 233 456677799999999999998877654332211 1111 1 2 36788
Q ss_pred EEcCCeEEEEEcCCCceeEEecCCCC----c------e-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 499 ISVDGKIKAWLYDSLGARVDYDAPGL----G------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~~~~~~~~~~~~----~------i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
+..+|.+..+|..+++.......... . + ....+ .+..++.++. ++.++.+|..+|+.+-....
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY----QGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc----CCEEEEEECCCCcEEEeecc
Confidence 88899999999988877654332110 0 0 01111 2445665554 56799999999987665542
Q ss_pred ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
. ...... ..+..++.++.+|.++.+|..+|+.+........ ........ .+..+++++.+|.+.++|..+
T Consensus 270 ~-----~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 270 S-----SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY-RQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred C-----CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC-CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 1 111222 3467888899999999999999988766532111 11122222 367899999999999999999
Q ss_pred CCeeeeccccc
Q 001396 648 SNSVDAAGVLS 658 (1086)
Q Consensus 648 ~~~~~~~~~~~ 658 (1086)
++.+.....+.
T Consensus 340 G~~~~~~~~~~ 350 (377)
T TIGR03300 340 GSFVARLKTDG 350 (377)
T ss_pred CCEEEEEEcCC
Confidence 98887766444
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=99.09 Aligned_cols=252 Identities=15% Similarity=0.116 Sum_probs=162.1
Q ss_pred CCceEeeecC---CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc---cEEEEEECCCC
Q 001396 329 SSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDG 402 (1086)
Q Consensus 329 ~~V~~~~~sp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg 402 (1086)
..+..+.|.- +|...++-+..+|.|.++.....+.... ++ + +..-.- .--++.|++.|
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTSG 133 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeeccC
Confidence 3667777753 4554566677778888887654332211 10 0 111111 24478899999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEE-eecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~ 480 (1086)
..++++..+|.+.+-+..... +.....+++|....+-+.|+..... ++.+||+|+.+..||++ .++.+.. .+.|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999998855544433 3333367899999999999877766 79999999999999998 4445543 567889
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC--CEEEEEeeCCCCceeEEEEeCCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
.|.++.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.- +.|++|-.++ ..+-+.+.
T Consensus 212 GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~ 285 (339)
T KOG0280|consen 212 GVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSD 285 (339)
T ss_pred ceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEecc
Confidence 9999887654 67899999999999999999766555445556789999998843 3444443322 33333332
Q ss_pred --CeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001396 559 --GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 604 (1086)
Q Consensus 559 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~ 604 (1086)
.+....+..+..|.+-...-.|......+++++ .|+.++ +|-..++
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 221122222222225555555544345577755 566644 6654443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-08 Score=109.77 Aligned_cols=206 Identities=14% Similarity=0.018 Sum_probs=131.1
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.+.... .+..-.|||||+++++..+.+ ..|.++|+.+|+... +....+.+...+
T Consensus 181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~ 239 (419)
T PRK04043 181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD 239 (419)
T ss_pred eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence 34344333 778899999998645544433 569999998887654 222445566788
Q ss_pred ECCCCCEEEEEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCcee
Q 001396 398 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT 472 (1086)
Q Consensus 398 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~ 472 (1086)
|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++++. ..+ .|.+.|+.+|+..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeE
Confidence 9999998876532 35688889887753 2 23334333445689999997444432 223 6888898888764
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcC---------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+... .... ...| ++||+.|+..+.. ..|.+.|++++....... . .......|+|||+.++....
T Consensus 315 rlt~-~g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 315 QVVF-HGKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eCcc-CCCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C-CCcCCeEECCCCCEEEEEEc
Confidence 3332 1111 2355 5577777666543 267778887766543322 2 23346889999999988765
Q ss_pred CCCCceeEEEEeCCCCe
Q 001396 544 SKEGESFLVEWNESEGA 560 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~ 560 (1086)
. .+...+.+.++....
T Consensus 388 ~-~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 388 L-GNQSALGIIRLNYNK 403 (419)
T ss_pred c-CCcEEEEEEecCCCe
Confidence 4 345668888876543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-07 Score=115.91 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=161.9
Q ss_pred EEEEEecC-CceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 732 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 732 ~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
..++++++ +..+++-..++.|++++.........+.... .....|. +. .+.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45778764 5556666667888888764321100000000 0000010 00 012234578999999887
Q ss_pred EEEEe--CCeEEEEEccCceEEEEEcCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 811 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 811 l~~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
|.++. ++.|+++|..++.. .++.+. -..-..++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 76665 47799999877653 333110 11236799999667777777888999999998765
Q ss_pred eEEEecc---------c------cCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeeee--------eecc---C
Q 001396 872 VISKLEG---------H------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTP---D 924 (1086)
Q Consensus 872 ~~~~l~~---------h------~~~v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~---~ 924 (1086)
.. .+.+ + ......|+++||++. +++-+.++.|++||+.++......- +... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 2211 1 123567999999984 5555667899999998765321000 0000 0
Q ss_pred CC--ccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceecccc------------CCccCEEEEEEeCCCCEEEE
Q 001396 925 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------ISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 925 ~~--~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------------~h~~~v~~l~fs~dg~~l~s 989 (1086)
+. .........++++++|..+++ ..+++|++||..++......-. +.-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000013468999999997777 6788999999987765432111 11235778999999999998
Q ss_pred EECCCcEEEEEcCCCce
Q 001396 990 SFVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 990 ~~~Dg~v~vWd~~~~~~ 1006 (1086)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-07 Score=92.63 Aligned_cols=205 Identities=19% Similarity=0.171 Sum_probs=140.9
Q ss_pred EEeecCCCEEEEEeCCeEEEEEccCc--eEEEE---EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 802 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 802 l~~s~dg~~l~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
++.++||++||+..|..|.|-..++. ..+.+ -+.....-+.++||| |+.+||.+...|+|+++|+...+ +..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 67889999999999999888876542 12222 223334568999999 99999999999999999998543 3333
Q ss_pred cc-------ccCCeEEEEEeCCC------CEEEEEeCCCcEEEEECCCC---ceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 877 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGW---GIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 877 ~~-------h~~~v~~l~~spdg------~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.. -..+|..+.|.+-. ..|+....+|.++=|-+..+ .-.....+....... ..|.++.+.|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 32 22467777776532 24566677888887776432 212222233222222 3799999999
Q ss_pred CCCEEEEEe-----C-------CeEEEEEcCCccceec--------------------cc--------cCCccCEEEEEE
Q 001396 941 DQTRFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATF 980 (1086)
Q Consensus 941 dg~~l~~~~-----d-------~~i~vwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~f 980 (1086)
..++|++++ + -.+..|.+-++..-.. +. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 1 1367777644321110 00 112678899999
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 981 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 981 s~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
||||+.||+...+|.|.+|++++.++.+.+.
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999999988776
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-07 Score=114.35 Aligned_cols=255 Identities=12% Similarity=0.096 Sum_probs=160.3
Q ss_pred eEEEeecCCCEEEEE-e-CCeEEEEEccCceEEEEEcC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCeE
Q 001396 800 PCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 862 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~-~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v 862 (1086)
..+++++++..+.++ . ++.|+++|.. +..+..+.. . -.....+++++ ++..|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 468898865444444 3 5889999986 444444432 1 12357899998 566555544 45789
Q ss_pred EEEEcCCceeEEEeccc-----------------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeee---ee
Q 001396 863 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 921 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~~h-----------------~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~ 921 (1086)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887643 333210 12346799999 56677777888999999998765322100 00
Q ss_pred ccCCCc---cCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccceecc------------ccC--------CccCEE
Q 001396 922 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS 976 (1086)
Q Consensus 922 ~~~~~~---~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~------------~~~--------h~~~v~ 976 (1086)
...+.. ........++|+|+|+.|.+ +.++.|++||+.++...... +.. .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000100 00124567999999986655 46789999999876532100 000 011346
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccc-cCCC--CccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 977 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 977 ~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
.++++++|..+++-+.+++|++||..++........... ...+ ....-..|..++++| +|+.+++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 889999999888888999999999998876643321100 0000 001113567899999 688888888899999999
Q ss_pred cCCCC
Q 001396 1054 PNEPG 1058 (1086)
Q Consensus 1054 ~~~~~ 1058 (1086)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=111.42 Aligned_cols=507 Identities=13% Similarity=0.122 Sum_probs=257.6
Q ss_pred CceEeeecCCCceEEEEEec----cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.-+...|+|... ++|+++. .|+|.||- ++|++....+++ -.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHH
Confidence 445678999987 6888874 47888885 566654432211 235569999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE--eecC--Ccc
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAP 481 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~--~~~h--~~~ 481 (1086)
|.|..-|.+.+|...+.+.-. ....|..+|.-+.||++|. .++++..-|.+.+|....-..++. +-.| ...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ 149 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ 149 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence 999999999999988754322 3457999999999999999 899999999999998763222211 1122 233
Q ss_pred eEEEeecccCCcc------EEEEEEcCCeEE-EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 482 VYSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 482 v~~~~~~~~~~~~------~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
++-++|.-+.++. ..++.+.+..+- .+++.......... -.=.|+|..++.++. +|.|+-.
T Consensus 150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyv 217 (1416)
T KOG3617|consen 150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYV 217 (1416)
T ss_pred eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEE
Confidence 4444443333321 123333333332 33332111100000 011367777777765 5567766
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc-CC----------------------------Ce
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQ 605 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~----------------------------~~ 605 (1086)
|- .|+......... .| .+-|.+...-+++.-.+-++.++-. .+ |-
T Consensus 218 dq-~g~~~~V~k~dS----~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 218 DQ-NGRQRTVHKLDS----EV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred cC-CCcEEEEEEccc----hH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 63 344333332211 10 1112221111221111111111111 00 10
Q ss_pred eE--EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC-------eeeecc---ccccceeeeEEccCCCce
Q 001396 606 LL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-------SVDAAG---VLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 606 ~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~---~~~~~v~~~~~~p~~~~~ 673 (1086)
+. ..+.. .....+.+++++..+..+..|...|.+.+|.-.... ....+. ...+.|..+.|+|..+.+
T Consensus 292 Lr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~ 370 (1416)
T KOG3617|consen 292 LRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA 370 (1416)
T ss_pred ccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence 00 00111 112357899999999999999999999999654321 111111 222334444454433322
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
++.+....+.+... ++. ..|.....++.-+.+.-
T Consensus 371 avn~~~~v~ll~E~-------------------------------~l~---~~h~~~~~A~q~ss~S~------------ 404 (1416)
T KOG3617|consen 371 AVNTEEDVVLLGEN-------------------------------SLT---VKHRGKMAAIQTSSNSF------------ 404 (1416)
T ss_pred hhhhhhheeeeccC-------------------------------chH---HHHhhhhHHhhhcCCce------------
Confidence 22111111111000 000 00111111111111110
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEE-
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT- 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~- 832 (1086)
.+-...+|.... + ...-++..++.+. ..+++..+.+|..|++.+......
T Consensus 405 ---------------------~L~hc~sGv~~~---l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~ 455 (1416)
T KOG3617|consen 405 ---------------------TLLHCTSGVSQD---L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATI 455 (1416)
T ss_pred ---------------------EEEeeccchhhh---h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHH
Confidence 010111111000 0 0122334444433 356666677888999864321111
Q ss_pred -EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001396 833 -IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 833 -~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 909 (1086)
........++++.. +.++...++++ |.++.+. |...+. +..-.+.|.-+.++ |.+++.....+.++-+|+
T Consensus 456 ~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dv 528 (1416)
T KOG3617|consen 456 QCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDV 528 (1416)
T ss_pred hhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhh
Confidence 11122233444444 34455556544 5555444 333322 23344555555554 789998888888888888
Q ss_pred CCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE---EeC----CeEEEEEcCCccce
Q 001396 910 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 964 (1086)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~---~~d----~~i~vwd~~~~~~~ 964 (1086)
...+.......+...+.....+.+..+..+..|..+.+ ..+ .++.+||.+++...
T Consensus 529 sr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 529 SRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred hhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 87665544444444444444467788888887776554 222 47999999877643
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=108.94 Aligned_cols=205 Identities=15% Similarity=0.236 Sum_probs=148.4
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-------ceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-------GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+..+.||+..|..++-.. +..-+++++.|++|++|.++.. .+..++..|..+|..+.|-.+-++++++
T Consensus 728 L~nf~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec---
Confidence 567889999998886533 4457999999999999988643 3677889999999999999999999998
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec--CCCEEEEE-ECCCcEEEEEcCCCeeEEEEcC---CCCCCC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAA-GDDHVIKIWDMNKVQLLTTIDA---GGGLPE 618 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~---~~~~~~ 618 (1086)
|+-|.+||.--|+++........+ +.+..+..-+ +...+++| +...+|+++|.+.++....+.. .+...-
T Consensus 803 ---D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 803 ---DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ---cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 567999999888776644332211 2222222223 34445554 7889999999998877665542 333445
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceec
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 698 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 698 (1086)
+.+++..+.|+.++++-.+|.|.+.|.+++..+...+...-....++ .|..+.++..
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-----------------------apsdq~L~~s 935 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-----------------------APSDQALAQS 935 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-----------------------CchhHHHHhh
Confidence 78999999999999999999999999999977665543222211111 3556667777
Q ss_pred cccCccce-ee
Q 001396 699 EAENKSEV-EK 708 (1086)
Q Consensus 699 ~~d~~i~v-w~ 708 (1086)
..|.++.+ |.
T Consensus 936 aldHslaVnWh 946 (1034)
T KOG4190|consen 936 ALDHSLAVNWH 946 (1034)
T ss_pred cccceeEeeeh
Confidence 77777777 76
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=127.15 Aligned_cols=201 Identities=16% Similarity=0.259 Sum_probs=161.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+..|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3345678889999999999999999999999999998877655432 33 8999999999999 677888899999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEE---EcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEE
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+. .++....+.|........|.. ..++++ +.++.+.+||.--... -.....|.+.++++++.|..+.+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 677777888988888887754 356665 3568899998654332 22337888999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
+. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 87 66799999998887766653 33 457899999999999999999888777754
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=110.18 Aligned_cols=294 Identities=10% Similarity=0.107 Sum_probs=185.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC-ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+..+.||+..|..++--.+.+. +++++.|++|++|.++.. ..+.+ ++|... +..|..+|..+.|
T Consensus 727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~igf 792 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIGF 792 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccceee
Confidence 45667899999999887666654 789999999999998652 22211 222222 5679999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
-.|-+++|++ ||-|++||.--|..+.+...-..| +.+..+..-++ .+.++++.++...+|+++|.+.++....++.
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9999999887 777999998877765543222222 23333433343 3443555568899999999999887766643
Q ss_pred -----CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 478 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 478 -----h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
..+.+.++++.+ .|..++.+-..|.|.+.|.+++..+..+.........++- |..+.++.... +..+.
T Consensus 870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeE
Confidence 445678888854 5678999999999999999998877666544433333332 44444544332 44566
Q ss_pred E-EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC----CeeEEEEcCCCCCCCCceEEEecC
Q 001396 553 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 553 i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+ |....|......+... .+..- .-.-|..++++.....+.+|--.. ...+..+....-....++++.-|-
T Consensus 943 VnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 943 VNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred eeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 6 7766665444433322 11111 112355677776666677774211 112223332222223567777776
Q ss_pred CCEEEEEECCCcEEE
Q 001396 628 GTLLAVIANENRIKI 642 (1086)
Q Consensus 628 ~~~l~~~~~dg~i~i 642 (1086)
..-+..|...|.|.+
T Consensus 1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhccCCCCceee
Confidence 666667777777765
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-07 Score=92.06 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=147.8
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC---CCC-EEEEEeCCCEEEEEEecCCCccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP---DGS-LLGVAYSKHIVQLYAYHGGSDAR 426 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg~-~las~~~d~~i~iwd~~~~~~~~ 426 (1086)
|.+.+|++...+......+ .......+..+.|+. +|. .|+-+-.+|.|.++.....+...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV 109 (339)
T ss_pred cceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence 5677777766555431111 111234556666653 455 56667778899999876543322
Q ss_pred cceEeccccc---cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee--EEeecCCcceEEEeecccCCccEEEEEEc
Q 001396 427 QQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV 501 (1086)
Q Consensus 427 ~~~~~~~h~~---~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 501 (1086)
.+..+..-.- .-.++.|++-+. -++++-.+|.+.+-+...+... ++++.|.-+.+...|+.. +.+++++|+.
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgD 186 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGD 186 (339)
T ss_pred eecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCC
Confidence 1111221111 234678888888 5788888999986665555444 488999999999998744 4479999999
Q ss_pred CCeEEEEEcCCCc-eeEE-ecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEE
Q 001396 502 DGKIKAWLYDSLG-ARVD-YDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 502 dg~i~vwd~~~~~-~~~~-~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~ 577 (1086)
|+.+..||++..+ .+.. .+.|...|.++.-+| ++.++++|+. +..|++||.+ -++++..-.. .+.|..
T Consensus 187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v----~GGVWR 258 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV----GGGVWR 258 (339)
T ss_pred CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc----ccceEE
Confidence 9999999999433 3333 345677888888776 6778999887 5679999998 4555433322 268999
Q ss_pred EEEecCCC-EEEEEECCCcEEEEEcCCCe
Q 001396 578 VHFDTAKD-QILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 578 ~~~~~~~~-~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+.++|.-. .++.+..-.-.+|-+...+.
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEecccc
Confidence 99998643 23333333445666665543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-07 Score=99.33 Aligned_cols=197 Identities=13% Similarity=0.020 Sum_probs=124.3
Q ss_pred cEEEEEECCCCCE-EEEEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC--CcEEEEe
Q 001396 392 SVNRVVWSPDGSL-LGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWD 465 (1086)
Q Consensus 392 ~V~~l~~spdg~~-las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d--~~i~iwd 465 (1086)
.+....|||||+. ++..+. +..|+++|+.+++... +....+......|+|||+.+ +++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~l-a~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSKL-LLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCEE-EEEEccCCCcEEEEEE
Confidence 7778999999985 665443 3579999998876432 33345556778899999963 3444433 4688889
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+.+++. ..+..+........| ++||+.|+..+. .+ .|.+.|+.+++....... ... ...|+|||+.++...
T Consensus 264 l~~g~~-~~LT~~~~~d~~p~~--SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 264 TNTKTL-TQITNYPGIDVNGNF--VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred CCCCcE-EEcccCCCccCccEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEE
Confidence 887764 444444432333456 557766665553 33 577778877665333221 111 248999999998877
Q ss_pred eCCC-----CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCC
Q 001396 543 TSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKV 604 (1086)
Q Consensus 543 ~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~ 604 (1086)
...+ +...|++.|+.++.... +.... ......|+|||+.++..+.+ ..+.+.++...
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRR-LTANG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEE-CCCCC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5332 22578999998886533 33221 22357899999988776533 23566666543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-09 Score=123.07 Aligned_cols=226 Identities=13% Similarity=0.176 Sum_probs=167.8
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-CCc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA 480 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 480 (1086)
+...+....+++..-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....+..+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 34444444455555565554332 2334556788888888877 899999999999999999988877743 336
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.|+.+.|+ .+|..+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-..
T Consensus 2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 78888774 467789999999999999876 455667777887777777766 66777776655 7789999965221
Q ss_pred e-eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 561 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 561 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
. -..-..|. +.++++++.|..+.+++|+.+|.|++||++..++++.++. +. ...++++|+..|.
T Consensus 2327 ~~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 1 11114444 8999999999999999999999999999998888777653 22 3568999999999
Q ss_pred EEEEECCCCCeeeecc
Q 001396 640 IKILETPESNSVDAAG 655 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~ 655 (1086)
++||++..-..+..+.
T Consensus 2392 ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEEccccchhhcCc
Confidence 9999999776555544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=102.18 Aligned_cols=165 Identities=21% Similarity=0.167 Sum_probs=116.1
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 408 (1086)
.++.+..+|+++ ++|++..+....++++...... .+.++.. -.. ..-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~---~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVP---KRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecc---cCcceeeeeeccceEEEEe
Confidence 556677888887 6899888888777777655431 1111110 011 223344444444444444
Q ss_pred --eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEE
Q 001396 409 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 485 (1086)
Q Consensus 409 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 485 (1086)
++...+.+|....+.+. .+-||-..+++++|+||++ +++++..|..|+|-.......+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 45556777776654433 3559999999999999999 8999999999999877666555554 5799999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
+..+ +..|+++|.|++|++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9753 3579999999999999999988775443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-06 Score=94.77 Aligned_cols=212 Identities=10% Similarity=0.047 Sum_probs=122.9
Q ss_pred eCCeEEEEEccCceEEEEEcCCCCCe-----EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccC-------C
Q 001396 815 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------R 882 (1086)
Q Consensus 815 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-------~ 882 (1086)
.+|.+..+|..+|+.+.......... .+.... ++ .++.++.+|.+..+|..+|+.+........ .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 35677777777777776664321110 111222 23 466677899999999999987665431100 0
Q ss_pred eEEEEEeC--CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCC
Q 001396 883 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 960 (1086)
Q Consensus 883 v~~l~~sp--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~ 960 (1086)
...+.-+| .+..++.++.+|.+..+|..+++..-... .+. ...+.. .++...+...++.+..+|..+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence 11111122 24566677789999999999876432111 111 111221 234444447789999999998
Q ss_pred ccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001396 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1040 (1086)
Q Consensus 961 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1040 (1086)
|+.+-...........+... .+.+|+.++.||.+.+.|..+|+.+.+..... ..+... .... ++.|
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~-P~~~---~~~l 379 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSE-PVVA---DDKL 379 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeC-CEEE---CCEE
Confidence 87653211110111222222 24567788999999999999999988775211 011110 1111 3589
Q ss_pred EEEeCCCcEEEEcc
Q 001396 1041 AVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1041 ~~~~~dg~v~vw~~ 1054 (1086)
++++.||.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 99999999998875
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00058 Score=78.72 Aligned_cols=582 Identities=10% Similarity=0.060 Sum_probs=281.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC----
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---- 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 401 (1086)
|..+-..|+.+-++| +|.+||.-|.=.+-.+.+-....... ...+. + ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence 555566777777888 48888886665666554433221000 00000 1 12246776665432
Q ss_pred CCEEEEEe---CCCEEEEEEecCCCccccceEeccccccEeEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 402 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 402 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~--~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
+..+++|+ .||+++|..-.-+-.......+.| -..++.+. +.+.-.. +++.+- -+.-++..+...-......
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf-~~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSF-ISETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEe-ccceEEEEEccceEEeccc
Confidence 34566654 578899886544322222223444 33466666 4433222 233222 2233444432221111112
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+.......+..+.- +++.|+-.. ...||+++-. .....+..+.+ ++....+.+...++.++. .+.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222222222211 222222222 2345665433 23333333433 333333444445555442 344555565
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCC------CEEEEEECCCcEEEE-EcCCCeeEEEEcCCC--CCCCCceEEEecC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN 627 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~ 627 (1086)
..+......+.. -...|.|+.++|-+ ++++.|..+..+.+. -..+...+....... -...+....|-.|
T Consensus 517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 555432222221 24689999998752 266777766554443 333333333322221 1122444555567
Q ss_pred CCEEEEEECCCcEEEEECC--CCCeeeecc--ccccceeeeEEcc---------CCCceeccccCCeeeecCCC------
Q 001396 628 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSVNP---------ISTVTGAGIANGSVSVNEDP------ 688 (1086)
Q Consensus 628 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~p---------~~~~~~~~~~~~~~~~~~~~------ 688 (1086)
..+|.++..||.+.-+.+. ++..-..-+ -...++.--.|.. .......-...+...|.+-.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~ 674 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH 674 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence 8899999999998876554 332111110 0111111111111 01111111111122221110
Q ss_pred -----CCCc-ccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCcc
Q 001396 689 -----KEDV-KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 762 (1086)
Q Consensus 689 -----s~d~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 762 (1086)
++.. .-++++ ..+.+++..++.-.....+.+ | -....+.+++.+....+.+.+.......=
T Consensus 675 ~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------- 741 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------- 741 (1096)
T ss_pred hcccccccCCceEEEe-cCCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh-------
Confidence 1111 112222 234455555442222222221 1 12344556666644444444332211100
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecC-CCEEEEEe-----------CCeEEEEEccCceEE
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTI 830 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~-----------dg~i~iwd~~~~~~~ 830 (1086)
..+.......++++|..+-..+...++...+....+.++.|..| +.++++|. .|.|.++....+..+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 01111222235566666655444434332222334445558777 78888774 267888888774444
Q ss_pred EEEcC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 831 LTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 831 ~~~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
..... -.+.+.++..- +|++||. -...|++|++.+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 33322 22444444433 5777763 356899999999877777777889999999999999999998888777766
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcC
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 959 (1086)
....+-. .....+...+ .+++++.+-.+..++.+-.+|.+++....
T Consensus 897 y~~~eg~---f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 897 YKGDEGN---FEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EeccCCc---eEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEec
Confidence 5553311 1222222211 47899999999998888777777776554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=109.00 Aligned_cols=223 Identities=15% Similarity=0.244 Sum_probs=152.9
Q ss_pred eeeccccceeeeeeeecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCc
Q 001396 371 VWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 449 (1086)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~ 449 (1086)
+|++...+......++.||...|+.+-|+|. -..||+++.|..+..||+.+... ....+..-...-..|+|+....
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p- 171 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP- 171 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc-
Confidence 4455444444445568999999999999995 46789999999999999988642 2223344445677899987766
Q ss_pred EEEEEEeCCCcEEEEeCCCC-ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-ecCCCCceE
Q 001396 450 ISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCT 527 (1086)
Q Consensus 450 l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~ 527 (1086)
.+...+..+.|.+||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+....... ......++.
T Consensus 172 -~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw 249 (1081)
T KOG0309|consen 172 -NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW 249 (1081)
T ss_pred -chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcce
Confidence 4555666778999999876 56788999999999998864332 3688999999999999876554332 223344666
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEE---------eCCC-CeeeeEEecccccCCceEEEEEecC----------CCEE
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEW---------NESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQI 587 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iw---------d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l 587 (1086)
.-.+.|-|+-.+.--..+ ...+.++ +..+ .+++..|.||. +.|....|-.. .-+|
T Consensus 250 ~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred eccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeE
Confidence 666777555333221111 2234443 3222 35788899988 66655444322 2378
Q ss_pred EEEECCCcEEEEEcCC
Q 001396 588 LAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 588 ~~~s~dg~i~iwd~~~ 603 (1086)
++-+.|.++++|-+.+
T Consensus 325 VTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEeecCCceEeeeccH
Confidence 9999999999998764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-06 Score=87.77 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=129.7
Q ss_pred EEEeecCCCEEEEEe------CCeEEEEEcc-CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe----------------
Q 001396 801 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 857 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---------------- 857 (1086)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 578999999999884 3679999999 7888899988887778899999 887777652
Q ss_pred --CCCeEEEEEcCCceeEEE--e--ccccCCeEEEEEeCCCCEEEEEeCCCc-------EEEEECCCCceeeeeeeeccC
Q 001396 858 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 858 --~dg~v~iwd~~~~~~~~~--l--~~h~~~v~~l~~spdg~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++-.-..|. |-+++-... . ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c--eeccCCh
Confidence 122566677888988876 5 337788999999999987776544432 444443331 1 1111111
Q ss_pred C-CccCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 925 G-VMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 925 ~-~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
. .....+.+-+|+++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ +++|.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 1 11222468899999999999885 45789999999999887633 3466677777676 6666554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00062 Score=78.48 Aligned_cols=579 Identities=11% Similarity=0.094 Sum_probs=288.1
Q ss_pred EECCCCCEEEEEeCCCEEEEEEec-CCCcccc---ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR- 471 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~- 471 (1086)
....+|...+.|..+|.+...-+. +++.... ....-+...-..|+..-++| ++..||.-|.=++-.+.+-.-
T Consensus 264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence 345678888888888877665554 4443322 11223455556777777777 578888766555555443221
Q ss_pred ------eEEeecCCcceEEEeecccC--CccEEEEEE---cCCeEEEEEcCCCce-eE--EecCCCCceEEEE-------
Q 001396 472 ------TYSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMA------- 530 (1086)
Q Consensus 472 ------~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s---~dg~i~vwd~~~~~~-~~--~~~~~~~~i~~~~------- 530 (1086)
+.++. .-+||..+++.... ....+++++ .||.+|+..-.-+-. .. .+.+ -..+..+.
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~ 418 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY 418 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence 13332 34588888765443 344566654 578888873211100 00 0111 01111111
Q ss_pred ----------------------------EecCCCEEEEEeeCCCC-----ceeEEEEeCCCCeeeeEEecccccCCceEE
Q 001396 531 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 531 ----------------------------~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 577 (1086)
|+.+.+.+++....++. ...|++++-. .....+... ..++.
T Consensus 419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti 492 (1096)
T KOG1897|consen 419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI 492 (1096)
T ss_pred CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence 22222223322221110 1123333322 111122221 23444
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC--C----CEEEEEECCCcEEEEECC-CCCe
Q 001396 578 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILETP-ESNS 650 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~~~-~~~~ 650 (1086)
...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.. +...
T Consensus 493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 4444555677777777777777777665 333333333346889989873 2 378888777665554332 2222
Q ss_pred eeeccccccce-eeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCccccc
Q 001396 651 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 729 (1086)
Q Consensus 651 ~~~~~~~~~~v-~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 729 (1086)
+....-....+ +++-+. .+ ..|..+|.++..||.+.-+-++.........-.. .-...
T Consensus 572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--~lGt~ 630 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV--TLGTQ 630 (1096)
T ss_pred eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEcccccc--ccCCC
Confidence 21111100000 011111 11 2347788888889988776655322111110000 00223
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeE-EEeecC-
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN- 807 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~-l~~s~d- 807 (1086)
++.--.|+..++.-+.+.+|.=..+|..+.. -++ ....++ .+.. ..|+.+
T Consensus 631 P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--------------Lv~--------spls~k------ev~~~c~f~s~a 682 (1096)
T KOG1897|consen 631 PISLRTFSSKSRTAVFALSDRPTVIYSSNGK--------------LVY--------SPLSLK------EVNHMCPFNSDA 682 (1096)
T ss_pred CcEEEEEeeCCceEEEEeCCCCEEEEecCCc--------------EEE--------eccchH------Hhhhhccccccc
Confidence 3444445544444333333333333321110 001 111111 1111 112222
Q ss_pred -CCEEEEEeCCeEEEEEccCceE--EEEEcCCCCCeEEEEEcCCCCCEEEEEeCC--------------CeEEEEEcCCc
Q 001396 808 -DAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARSS 870 (1086)
Q Consensus 808 -g~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~~ 870 (1086)
...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+.- ..++++|-.|-
T Consensus 683 ~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf 760 (1096)
T KOG1897|consen 683 YPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF 760 (1096)
T ss_pred CCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence 3456777777777776654332 23322 223445666665 34444443321 14667776665
Q ss_pred eeEEEecc-cc---CCeEEEEEeCC-CCEEEEEeC----------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceE
Q 001396 871 EVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 871 ~~~~~l~~-h~---~~v~~l~~spd-g~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
+.+...+- .. -.|.++.|..| +.+++.|.. .|.|.|+.+..... ...+....-. +.+
T Consensus 761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v~----Gav-- 832 (1096)
T KOG1897|consen 761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVVK----GAV-- 832 (1096)
T ss_pred eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeeec----cce--
Confidence 55433221 11 23445568877 677777642 46677777766211 1111111000 112
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc--eeeeeccc
Q 001396 936 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRILST 1013 (1086)
Q Consensus 936 ~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~--~~~~~~~~ 1013 (1086)
.+.--=...++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|..-+++.+-..+..+ ..-.-+
T Consensus 833 ~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-- 909 (1096)
T KOG1897|consen 833 YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-- 909 (1096)
T ss_pred eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--
Confidence 2222223345556777899999998866664 56788899999999999999999887877665554433 331111
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1014 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.+ .+-|..++.+- +.+.++.+..+|.+.+-......
T Consensus 910 D~-------~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 910 DY-------NPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred hh-------CccceeeEEEe--cCceEEeecccccEEEEEecCCC
Confidence 11 22344555555 46788889999999998876444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-06 Score=96.81 Aligned_cols=340 Identities=14% Similarity=0.113 Sum_probs=187.8
Q ss_pred EEEEEECCCCCEEEEEe----CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 393 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 393 V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
-+-..|+|...++|+++ ..|.|.||- ++|+..+. .+..- .+++++|+|..- +|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 34467999999999885 357788884 45553221 12222 356799999866 788888899999999877
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--C--CCc--eEEEEEecCCCEEE---
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P--GLG--CTRMAYSANGRRLF--- 539 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~--~~~--i~~~~~s~d~~~l~--- 539 (1086)
.+.-.....|..+|..+.|+ ++|..++++..-|.+.+|..+..+....... | +.. ..+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 77666667899999999995 5778999999999999998875444332211 1 112 23344456543221
Q ss_pred --EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 540 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 540 --~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+.+.+..+-....-|..++. .+... -.-.|+|..++.++.+|+|+-.|- .|+..........
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a--~rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLA--ERSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccCchhhhcccccCccchh--hcccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence 11111111001111211110 00000 012467888899999999988773 4555555543322
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECC-CCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
..+-|.+...-+++...+-++.++-.. .|..- .+..+.++-. .|. ..|. ++
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~e--------e~~~vk~sgk-----~Gg------------rqGg-iA 284 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSE--------ERCAVKVSGK-----LGG------------RQGG-IA 284 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCchH--------Hhhhhhhccc-----cCC------------ccCc-cc
Confidence 335555544445544444444443322 22110 0100111100 000 0111 22
Q ss_pred eccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCce
Q 001396 697 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 776 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 776 (1086)
.+.+.|.++- ..... ......+.+++++..+..+.++...|.+.+|.-....+ ....++..
T Consensus 285 ~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~ 345 (1416)
T KOG3617|consen 285 CSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDV 345 (1416)
T ss_pred cccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcce
Confidence 2222221111 00000 11345789999999999999999999999996433222 11224556
Q ss_pred ecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE
Q 001396 777 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 814 (1086)
Q Consensus 777 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 814 (1086)
|.+.+.. ...+.|+.+.|.|-...+++-
T Consensus 346 w~l~~~~----------e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 346 WTLNGKR----------ESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred EEecCch----------hhccceEEEEeccccchhhhh
Confidence 6655433 245678888888855544443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-06 Score=93.49 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=93.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCc--ceE-----EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 523 (1086)
.++.++.++.+.-+|.++|+.+........ ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788999999999998876543220 000 0000011123467888899999999999999888776544
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC--CceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
....+... .++ .++.+.. ++.++.+|..+|+.+-.+....... ....+-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 32222222 244 4444432 6689999999999887765432000 00011111 1346777888999999999
Q ss_pred CCCeeEEEEc
Q 001396 602 NKVQLLTTID 611 (1086)
Q Consensus 602 ~~~~~~~~~~ 611 (1086)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.6e-06 Score=82.99 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=141.9
Q ss_pred eeEEEeec-CCCEEEEEe-CC-eEEEEEccCceEEEEEcCCCCCe--EEEEEcCCCCCEEEEEe-----CCCeEEEEEcC
Q 001396 799 VPCFALSK-NDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGM-----DDSTILIYNAR 868 (1086)
Q Consensus 799 v~~l~~s~-dg~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~-----~dg~v~iwd~~ 868 (1086)
...++.+| ++..++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34678889 555666665 34 58999999999998877655443 3578999 888888753 34799999999
Q ss_pred -CceeEEEeccccCCeEEEEEeCCCCEEEEEeC-------CC-----------cEEEEECCCCceeeeeeeeccCCCccC
Q 001396 869 -SSEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DA-----------QIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 869 -~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-------dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
+.+.+.++..|.-.-..+.+.|||+.|+.+-. .| .+..-|..+++......+......
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~--- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ--- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc---
Confidence 67888999888777788999999988887521 12 244555666654443222211122
Q ss_pred CCCceEEEEecCCCEEEEEe------CC--eEEEEEcCCccceeccc------cCCccCEEEEEEeCCCCEEE-EEECCC
Q 001396 930 APSETHIQFHKDQTRFLLVH------ET--HLAIYEAEELTCLKQWF------PISSVPISQATFSCDCRMVF-TSFVDG 994 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~~------d~--~i~vwd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~-s~~~Dg 994 (1086)
-.|..+++.++|..++... +. -+.+++.... +..+. ..-...+-+|+++.+|.+++ |+-.-+
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 2599999999999877631 11 2445544332 21111 11267899999999998775 555678
Q ss_pred cEEEEEcCCCceeeeec
Q 001396 995 TLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 995 ~v~vWd~~~~~~~~~~~ 1011 (1086)
++.+||..+++++....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 99999999999996655
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.3e-08 Score=99.01 Aligned_cols=159 Identities=9% Similarity=0.096 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEeccccCCeEEEEEeCCCCEEE---EEeCCCcEEEEECCCCc
Q 001396 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 841 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~---s~s~dg~i~iwd~~~~~ 913 (1086)
..+..++ ++++||++..+....++++.... ++..... ...-+++.|..+..... .+++...+.+|....+.
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445666 88999999888887777776433 2222221 12233444444444433 34555666677666422
Q ss_pred eeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
....-||.. .++.+++|||+++++++ .|..|+|-.+..--.+..+..||..-|..++.-++ ..|+++|.
T Consensus 144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 233456665 79999999999999996 78899999999888888889999999999998764 56999999
Q ss_pred CCcEEEEEcCCCceeeeec
Q 001396 993 DGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 993 Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
|++|++||+.+|+.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999987665
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-07 Score=85.91 Aligned_cols=148 Identities=11% Similarity=-0.040 Sum_probs=108.1
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
+.++++|+|++++++.+....|..|.+...............++.=.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999976543332223344455567889998887 7999999999999999865443
Q ss_pred E-----EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC--------ceEEEEEecCCCEEE
Q 001396 473 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF 539 (1086)
Q Consensus 473 ~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~d~~~l~ 539 (1086)
. +-..|.+.+..+.|++.+--.+|+..-.-+.+.+.|+++......+..... .+....|+.++.-+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 224589999999998755556777777788999999998876554333222 255566666665555
Q ss_pred EEe
Q 001396 540 SCG 542 (1086)
Q Consensus 540 ~~~ 542 (1086)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-06 Score=80.82 Aligned_cols=255 Identities=11% Similarity=0.075 Sum_probs=138.8
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
++.+.||+.||... +..|.+-..+.. ..+.+.+........-+.++|+||+..|+.+...|+|++||+....+
T Consensus 3 ~~~~~~Gk~lAi~q-----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred eeecCCCcEEEEEe-----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 56778999999876 556666554432 23344444443345678899999999999999999999999976443
Q ss_pred EEEEcCCC-C----CCCCceEEEecCC------CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceec
Q 001396 607 LTTIDAGG-G----LPENPRICFNKNG------TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 607 ~~~~~~~~-~----~~~v~~v~~s~~~------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 675 (1086)
..+.... . ...|..+.|-+.. ..|++....|.++-|-+..+
T Consensus 78 -f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g--------------------------- 129 (282)
T PF15492_consen 78 -FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG--------------------------- 129 (282)
T ss_pred -EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc---------------------------
Confidence 3433211 0 1123333343311 12333333344333332111
Q ss_pred cccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEe
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 755 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw 755 (1086)
...+....+.+. +. ......|.++.+.|..+.|++++....-.
T Consensus 130 -----------------------t~q~y~e~hsfs-----------f~-~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~-- 172 (282)
T PF15492_consen 130 -----------------------TNQGYQENHSFS-----------FS-SHYPHGINSAVYHPKHRLLLVGGCEQNQD-- 172 (282)
T ss_pred -----------------------cCCcceeeEEEE-----------ec-ccCCCceeEEEEcCCCCEEEEeccCCCCC--
Confidence 000111111110 00 11355789999999988888877652100
Q ss_pred eccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC
Q 001396 756 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 835 (1086)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~ 835 (1086)
.........+..|.+.++...... ..+.+...-.. ..+..+|.+.+.+.......
T Consensus 173 ---------~~s~a~~~GLtaWRiL~~~Pyyk~--------------v~~~~~~~~~~--~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 173 ---------GMSKASSCGLTAWRILSDSPYYKQ--------------VTSSEDDITAS--SKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred ---------ccccccccCceEEEEcCCCCcEEE--------------ccccCcccccc--ccccceeeccceeeeecccc
Confidence 001111224555665554422221 00111111000 01123444444433333344
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccc
Q 001396 836 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 879 (1086)
Q Consensus 836 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 879 (1086)
..+.|..|..|| ||++||+...+|.|.+|++.+-++...+.-+
T Consensus 228 ~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 667899999999 9999999999999999999988776665533
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=93.60 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhhhccCchhhhhh---------------ccccHHHHHHHHhCCCHHHHHHhhccCc--cccccccccee
Q 001396 4 LNKDLVFLILQFLNEEGFTESAHI---------------FYFDMKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTKI 66 (1086)
Q Consensus 4 ~~~evvrli~q~L~~~G~~~s~~~---------------~~~~~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~ 66 (1086)
.++|+-|||+.||-..||..+|.. .-.+...+|.+|..|+-++|+..+..+- .++.+. . +
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~--~-l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR--E-L 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch--h-H
Confidence 467899999999999999999988 1224556899999999999999998872 333332 2 8
Q ss_pred hhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc---cccccccccccccCCChHHHHHHHHHHH
Q 001396 67 YFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL---DDIRDHELLSKYYGDALSARKNMMLELK 143 (1086)
Q Consensus 67 ~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~---~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 143 (1086)
.|.+.+|+++||+..+...+|++|++++|.|+...++..++.|...|.. +..++.+. .|.- ....|.++...+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~--~~l~-~~s~R~kvA~~vN 178 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPS--AELL-SQSLRQKVASEVN 178 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcH--HHHH-HHHHHHHHHHHHH
Confidence 8999999999999999999999999999999987777777766665553 32221111 0000 1244777777776
Q ss_pred hhcccCccccccccCCCCCchHHHHHHHHhHHhh
Q 001396 144 QIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 177 (1086)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 177 (1086)
..|-...- .+ -..+|..|+..-+..|
T Consensus 179 ~aiL~~~~------~~--~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 179 SAILASQE------HE--SEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHhc------cc--ccchHHHHHHHHHHHH
Confidence 66544211 10 1447888885444444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=103.92 Aligned_cols=294 Identities=13% Similarity=0.143 Sum_probs=188.2
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccc--cEeEEEecCCCCcE-EEEEEeCCCcEEEEeC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQI-SVITCGDDKTIKVWDA 466 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~s~d~~~l-~l~s~~~d~~i~iwd~ 466 (1086)
.+++.++.++|.|+-+|.++.-| +.+-|+...-. .. .+-.|.. .|-.+.|+|..... .+|+.+ .....+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--PP-RWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC--Cc-eeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence 46788999999999999999888 66777764321 11 1112322 46778888876533 455544 555678997
Q ss_pred CCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecC-CCEEEEE
Q 001396 467 VTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFSC 541 (1086)
Q Consensus 467 ~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d-~~~l~~~ 541 (1086)
... ..-..+.+|...|+.+-|++. ....+++++.|-.+..||+++..... .+..-......++|+.. +..+++.
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCC-CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 643 334567889999999999865 34589999999999999999866543 44444445667888774 4455544
Q ss_pred eeCCCCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 542 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
. ...|.+||.+.| .++..+++|. ..|+.+.|..- ...+.+.+.||+|+.||.............. ...+
T Consensus 178 h-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~pi 248 (1081)
T KOG0309|consen 178 H-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPI 248 (1081)
T ss_pred c-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcc
Confidence 3 345999999865 5667777766 78888888753 3467889999999999987543222111111 1234
Q ss_pred ceEEEecCCCEEEE-----------EECCCcEEEEECCC-CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCC
Q 001396 620 PRICFNKNGTLLAV-----------IANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 687 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~-----------~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 687 (1086)
..-.+-|-|.-.++ --.+.....|+..+ .+++..+.||.+.|....|-...... ++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence 44445553321111 11122223344433 36788889999888665554322211 11
Q ss_pred CCCCcccceeccccCccceeeee
Q 001396 688 PKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 688 ~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.....-.|++-+.|.++|+|.+.
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCccceeEEEeecCCceEeeecc
Confidence 11223468999999999999865
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=90.57 Aligned_cols=259 Identities=14% Similarity=0.200 Sum_probs=163.2
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCce-----EEEEEcCCCC------------CeEEEEEcCCCC-CEEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHDN-NVIAI 855 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~d~-~~las 855 (1086)
....|+++.|...|.|+++|. +|.|.+|.-+... ....+++|.. .|..+.|..+.+ ..+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 566799999999999999998 6889998765322 2233555542 356777765333 34555
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------EE-----Ee-ccccCCeEEEEEeCCC
Q 001396 856 GMDDSTILIYNARSSEV-------------------------------------IS-----KL-EGHSKRVTGLVFSDAL 892 (1086)
Q Consensus 856 g~~dg~v~iwd~~~~~~-------------------------------------~~-----~l-~~h~~~v~~l~~spdg 892 (1086)
.+.|.+|++|.+..... +. .. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 67799999998753210 10 01 3477778899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc--cCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccc-----
Q 001396 893 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC----- 963 (1086)
Q Consensus 893 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~----- 963 (1086)
..++++ .|-.|.+|+++-.... ..+-....+. ....-|++..|+|....++. ++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~s--FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGS--FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCCc--eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 998876 4667999998753211 1111111111 11145788999998766554 6889999999873211
Q ss_pred -eec---------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC-ceeeeeccccc----cCCCCccCcccc-
Q 001396 964 -LKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAY----LRPTTSCLHVYP- 1027 (1086)
Q Consensus 964 -~~~---------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~~~----~~~~~~~~~~~~- 1027 (1086)
+.. ++.+-...|..+.||++|+|+++-.. -+|++||+.-. .++.++..+.. +...+-++.++.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 100 11122567889999999999998754 58999998754 44544432111 111112333433
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1028 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1028 ~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
..+.|+. |...+++|+..+...++-...++
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEEEecC-CcccccccccccceeeeccccCC
Confidence 5677887 45778888877776666543333
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-07 Score=90.43 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=87.1
Q ss_pred CCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCce---EEEEEcCCC-----CCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 794 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
.|...+.++.|..|.+.++++.+=.|-+|++.-.. .+..++.|. .-|++..|+|....++...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999886322 233445554 3478999999777888889999999999
Q ss_pred EcCCcee------E----------EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001396 866 NARSSEV------I----------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 866 d~~~~~~------~----------~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 912 (1086)
|++...+ + .-+.+-...|..+.|+++|+++++-+. -+|+|||+...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 9984221 0 111222346777889999888887543 46889988763
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-05 Score=80.58 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=138.7
Q ss_pred EEEEec-CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee-cCCCE
Q 001396 733 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY 810 (1086)
Q Consensus 733 ~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s-~dg~~ 810 (1086)
+++|.+ ++..+++-...+.|..|+.... . ...... . ....+++. +++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~-----~-~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL-----P-GPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES-----S-SEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec-----C-CCceEEEEccCCEE
Confidence 467777 5555555555677776654332 2 111111 1 26677887 66555
Q ss_pred EEEEeCCeEEEEEccCceEEEEEcC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CeEEEEEcCCceeEEEec
Q 001396 811 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE 877 (1086)
Q Consensus 811 l~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~ 877 (1086)
+.+..+.+.++|..+++....... .....+.+++.+ +|++.++.... |.|..++.. ++......
T Consensus 55 -~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 55 -YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp -EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred -EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 445556666669988865443332 335678999999 88888776544 557777777 55433333
Q ss_pred cccCCeEEEEEeCCCCEEE-EEeCCCcEEEEECCCCc--eeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeE
Q 001396 878 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL 953 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~-s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i 953 (1086)
.-.....|+|+||++.|. +-+..+.|..++++... ......+....... +....+++..+|++.++ ...+.|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence 345578999999998765 55677889999886432 22223332222221 13668999999998887 467899
Q ss_pred EEEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEE
Q 001396 954 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTS 990 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~ 990 (1086)
.+++.. |+.+..+..+ ...+++++|. +|.+.|+..
T Consensus 208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 999987 8877765554 4589999995 566665544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=87.50 Aligned_cols=209 Identities=14% Similarity=0.202 Sum_probs=129.5
Q ss_pred ceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 331 V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
|+.+.|+-+ +.|+++..++.+......++.+.. .|+-.....++.. +..|.++-.+-+.+--+..++++..
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence 666777765 458888888888887776665543 2332222222222 3345554444455556788999999
Q ss_pred CCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 411 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
||.+.+.+.+.- ++...... .|.+ --+.+....+. .+.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 1222 11222333344 333332 1234556665543322211222334888
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
++-+|.+. +.+++|+.||.+-+||.+...... .+..|..++..+.|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88887644 688999999999999999875544 5677888999999999 6778888886 66799999654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-05 Score=81.61 Aligned_cols=207 Identities=15% Similarity=0.198 Sum_probs=134.9
Q ss_pred eeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeEE
Q 001396 799 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS 874 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 874 (1086)
...+++|.||+++.+.. ...|.|.|+...+.+..+.... ... .+ |.+++-+.+-+.||++.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~--iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWL--IY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEE--EE-EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEE--EE-ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 34578999999999987 4679999999999998886432 221 22 2134567788889999999887 455432
Q ss_pred E----eccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc---cC-CCCceEEEEecCCCEE
Q 001396 875 K----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---TL-APSETHIQFHKDQTRF 945 (1086)
Q Consensus 875 ~----l~~h~~~v-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~-~~~v~~~~~s~dg~~l 945 (1086)
+ |..-.+++ ..-+++.++..++..+..|.|+--|+.................. .. .+.-..+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 22222222 23455556666666889999999999887655444444322110 00 0455679999877766
Q ss_pred EE-E---eCC-------eEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEE-ECCCcEEEEEcCCCceeeeec
Q 001396 946 LL-V---HET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 946 ~~-~---~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~-~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
.+ . .++ .|-++|+++++.+..+.. ..++.++..|.|.+ +|++. ..++.+.+||..+|+.+.++.
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 65 2 222 488889999999987654 34577999999886 55444 457899999999999998887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-05 Score=80.39 Aligned_cols=220 Identities=17% Similarity=0.143 Sum_probs=143.8
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC-CCCCEEEEEeCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYSK 411 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~d 411 (1086)
+..|.+....|+++....+.|..|+..+++.... ... ....+++. ++|+++ .+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~-v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLY-VADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEE-EEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEE-EEEcC
Confidence 5788983335788887889999999988865421 111 16677777 665554 45455
Q ss_pred CEEEEEEecCCCccccceEec--c-ccccEeEEEecCCCCcEEEEEEeCC--------CcEEEEeCCCCceeEEeecCCc
Q 001396 412 HIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~v~~s~d~~~l~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
+ +.++|..+++.. ...... . .....+++++.++|+ +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 5 566698887543 222331 2 345789999999999 66665533 557777766 5543333 3345
Q ss_pred ceEEEeecccCCccEE-EEEEcCCeEEEEEcCCCce----eE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 481 PVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~----~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
..+.++|++ +++.| ++-+..+.|..++++.... .. .+....+....+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 568889865 56555 5667888999999864433 11 12222235788999999988777553 56799
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 591 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 591 (1086)
++|.+ |+.+..+.... ..+++++|. ++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence 99987 88888888765 588999994 6767776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.2e-06 Score=85.33 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=138.3
Q ss_pred CCeEEEEEccCceEEEEEcCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCC
Q 001396 816 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 816 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 893 (1086)
+|.|..||..+|+.+....-. .....+..+. ++..+++++.++.++.||..+|+.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999999887542 1222322332 344677778999999999999999877764 22222212 22455
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCc
Q 001396 894 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 972 (1086)
Q Consensus 894 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~ 972 (1086)
.++.++.++.|..+|..+++..-........... .........++..++++ .++.|..+|.++|+.+-.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6666778889999999888754421111111110 12233344447777775 589999999999998766433221
Q ss_pred c---------CEEEEEEeCCCCEEEEEECCCc-EEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001396 973 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1042 (1086)
Q Consensus 973 ~---------~v~~l~fs~dg~~l~s~~~Dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1042 (1086)
. .+..-....++ .++.++.++. +.+ |+.+++.+.+.. ... .. . ...+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 12222333345 7777777885 555 999999663221 111 11 1 1223 4678888
Q ss_pred EeCCCcEEEEccCCCCCCCC
Q 001396 1043 GLTNGEVYVIEPNEPGDTWA 1062 (1086)
Q Consensus 1043 ~~~dg~v~vw~~~~~~~~~~ 1062 (1086)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999988776663
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.1e-05 Score=82.27 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=141.2
Q ss_pred CCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
+|+|..||..+|+.+-.. .+.. ... ..+. ..++++ .+++++.++.+..||..+|+.+.++.. ...+...-
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~-~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGG-PVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSS-EEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCC-ccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---
Confidence 678899999888765533 1211 122 1111 233455 567778899999999999999888764 22222111
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEe-cCCC---CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
..++..++.++.++.+..+|..+++..... .... ..........++..++++.. .+.|+.+|.++|+.+..+
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 113346777778899999999999988873 3221 11223333344777777764 567999999999998888
Q ss_pred ecccccC-Cc------eEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 566 QGLQLQH-NS------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 566 ~~~~~~~-~~------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
....... .. +..-....++ .++.++.++.+..+|..+++.+.... ... +.. ....++..+++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG---IYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC---ccC-CceeeCCEEEEEeCCC
Confidence 7633110 11 1122222334 78888888864444999999765433 111 122 2456788888888999
Q ss_pred cEEEEECCCCCeee
Q 001396 639 RIKILETPESNSVD 652 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~ 652 (1086)
.+..||+.+++...
T Consensus 223 ~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 223 RLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEe
Confidence 99999999987654
|
... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=93.87 Aligned_cols=177 Identities=16% Similarity=0.111 Sum_probs=131.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
+.++||-+-.-.-++.+.+-.|-+-|+++|.... + ...+.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 4447775432223444556789999999986542 2 256889999999999999999999
Q ss_pred CEEEEEEecCCCcc--ccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCce---eEEeecCCcceEEE
Q 001396 412 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL 485 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~ 485 (1086)
|.|...|++.+..- .+. .---|...|+++..-. +++ +|++.+.+|.|++||.+--++ +..+.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999875221 111 1225888999998877 555 788889999999999987666 88999998776666
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC----ceEEEEEe
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYS 532 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s 532 (1086)
-++..+....+++++.|...|+|.++.+....+...... .+.+++|.
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 666677777999999999999999998887776654432 34445543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0003 Score=68.15 Aligned_cols=136 Identities=13% Similarity=-0.039 Sum_probs=91.0
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 573 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 573 (1086)
.+++.|+..+.+.--|..++......... .++.+-+.- -|++++.|.. .+.++..+..+|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 46777888888888887777766544332 233333332 4667877776 5569999999998888877654 2
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcE
Q 001396 574 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 640 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 640 (1086)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..|-...|+.+...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence 2233456788999999999999999999999999887766553 2334445522334444444433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-06 Score=79.14 Aligned_cols=226 Identities=11% Similarity=0.000 Sum_probs=149.2
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
.-.+||.|+..|...+|...+.+..-. ....|...|+-+.=.-|.+. -+..++.|.++++.+++-+.....+ |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--ecc
Confidence 345899999999999999997654322 22344444433322223332 4666788999999998765443322 333
Q ss_pred c--eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 481 P--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 481 ~--v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
. +.++++ ++|+.++++.+....|..|.++...... ........-.+..|+.....+|++.. ++.+.|||
T Consensus 158 ~~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~D 231 (344)
T KOG4532|consen 158 NLTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYD 231 (344)
T ss_pred ccceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEE
Confidence 3 666666 5677899999999999999988766533 22333345567889999999999987 77899999
Q ss_pred CCCCeeeeEEe--cccccCCceEEEEEecCCC--EEEEEECCCcEEEEEcCCCeeEEEEcCCCC------CCCCceEEEe
Q 001396 556 ESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKD--QILAAGDDHVIKIWDMNKVQLLTTIDAGGG------LPENPRICFN 625 (1086)
Q Consensus 556 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~--~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~v~~s 625 (1086)
++......... ....|++.++.+.|++.|. .|+..-.-+.+.+-|++++...+.+..... ...+....|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 98654332221 1122568999999998653 455555667899999999877665543221 1235566666
Q ss_pred cCCCEEEEEECC
Q 001396 626 KNGTLLAVIANE 637 (1086)
Q Consensus 626 ~~~~~l~~~~~d 637 (1086)
.++..+.+.+.+
T Consensus 312 ~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 312 NENESNDVKNEL 323 (344)
T ss_pred CCCcccccccch
Confidence 666655555443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=89.18 Aligned_cols=297 Identities=14% Similarity=0.146 Sum_probs=191.7
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
|...|+.+..+ -.+.+++++-||.++.|.-.. ..|..+... ...|...+.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKh---FraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKH---FRAHLGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhh---hHHHHHHHHhhhccc
Confidence 56666665444 566789999999999985221 011111111 113777888999999
Q ss_pred CCCEEEEEe--CCeEEEEEccCceEEEEEcC--CCCCeEEEEEcCCCC-CEEE-EEeCCCeEEEEEcCCce-eE-EEecc
Q 001396 807 NDAYLFSAS--GGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDN-NVIA-IGMDDSTILIYNARSSE-VI-SKLEG 878 (1086)
Q Consensus 807 dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~d~-~~la-sg~~dg~v~iwd~~~~~-~~-~~l~~ 878 (1086)
||.++.+.. |..++++|+++...+.-++- .++. -+...++.|. ..|| +.-.+|.+.++|-.... .. ..-.-
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 999999976 57899999987766533322 2222 2233344111 1333 33457899999976543 23 33344
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeee--e---e---eccCCCccCCCCceEEEEecCCCEEEE-Ee
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR--S---L---QTPDGVMTLAPSETHIQFHKDQTRFLL-VH 949 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~--~---~---~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 949 (1086)
|..+|.++.+++-+..++|....|.|.-|.... ..+..+ . + ..+-+.........++.|+|+|..+++ +.
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 999999999999999999999999999999874 111000 0 0 001111111145789999999999998 78
Q ss_pred CCeEEEEEcCCccceeccccC-------------------------------C-ccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 950 ETHLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 950 d~~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
|..|++++.++|+.++.+-.. | ...-+.++|...|.+|+-++-=| |+
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik 300 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK 300 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence 899999999999877652210 2 33446678889999999887765 99
Q ss_pred EEEcCCCceeeeecccccc---------CCCCccC-------cccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001396 998 IHEASNLEVQCRILSTAYL---------RPTTSCL-------HVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 998 vWd~~~~~~~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~p~~~~~l~~~~~dg~v~vw 1052 (1086)
|.++.++.+.+.+...... ....... ...+ .+.+.+ |+.+++++-.-+.++++
T Consensus 301 vin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 301 VINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 9999999887554411110 0000000 0111 133666 78899999999999998
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.4e-08 Score=107.02 Aligned_cols=195 Identities=17% Similarity=0.212 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC--cE
Q 001396 827 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--QI 904 (1086)
Q Consensus 827 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg--~i 904 (1086)
.+..++|..|....+|++|+- +.++|++|+..|.|++|++.+|.......+|..+|+.+.-|-||..+++.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 899999999999999999999999999999999999999999998887765433 46
Q ss_pred EEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCC---ccCEEEEEE
Q 001396 905 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS---SVPISQATF 980 (1086)
Q Consensus 905 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~f 980 (1086)
.+|++.+.- .....+. .-.++.||.....-+.| ......+||+.++..+.+++.+. +..-....|
T Consensus 1170 aLW~~~s~~----~~~Hsf~-------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSFD-------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Ccccccc-------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799988611 1122222 35678898886555554 44678999999999888766543 333467789
Q ss_pred eCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 981 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 981 s~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
||+..+++ .||. +||++..+.+.+|........ =.|+| .|+.++.-+ -|||+.
T Consensus 1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~-----------G~FHP-~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGG-----------GGFHP-SGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred CCCcceEe---eCce--eeeeccHHHHhhhhhheeccc-----------ccccC-CCceEEeec-----hhhhhH
Confidence 99999888 6773 699999988877763221111 13777 566666544 466653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-05 Score=78.55 Aligned_cols=285 Identities=12% Similarity=0.134 Sum_probs=153.5
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----------CCCcEEEEEcCCCeeEEEEcCCCC---
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG--- 615 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~--- 615 (1086)
++++++|.++++.+..+.. +-...+..+|+++.+++++ ..-.|.+||..+-.+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4699999999998877776 3345577899999998754 334699999999988887655432
Q ss_pred --CCCCceEEEecCCCEEEEEEC--CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCC
Q 001396 616 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 691 (1086)
Q Consensus 616 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d 691 (1086)
.......+++.||+++++.-. ..+|.|.|+...+.+..+.... |.-+-|.+
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--------------------- 146 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--------------------- 146 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence 123456788889988877533 4568888888776655443211 11111110
Q ss_pred cccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccc
Q 001396 692 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 771 (1086)
Q Consensus 692 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 771 (1086)
.+.+.+-..||++....++............-......-+..-+++..+..++-.+-+|.|+--++.......
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~------- 219 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF------- 219 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence 0113333334444443333111110000000000011112233444555555556677777766655443211
Q ss_pred cCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-e--------CC--eEEEEEccCceEEEEEcCCCCCe
Q 001396 772 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S--------GG--VISLYIVMTFKTILTIMPPSPTA 840 (1086)
Q Consensus 772 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~--------dg--~i~iwd~~~~~~~~~~~~~~~~i 840 (1086)
..-|.+.+.... .... ..+.-.-+++++....|.+. . ++ .|.++|+.+++.+.++.- ..++
T Consensus 220 --~~~~~~~t~~e~-~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~ 291 (342)
T PF06433_consen 220 --GKPWSLLTDAEK-ADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI 291 (342)
T ss_dssp --EEEEESS-HHHH-HTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred --cCcccccCcccc-ccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence 112222110000 0000 11222346777655444443 1 21 388889999999998873 3467
Q ss_pred EEEEEcCCCCCEEEEEe-CCCeEEEEEcCCceeEEEecc
Q 001396 841 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 841 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
.+++++.++..+|.+.+ .++.+.+||..+|+.+.++.+
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999996665776554 578999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-05 Score=87.80 Aligned_cols=184 Identities=12% Similarity=0.073 Sum_probs=118.9
Q ss_pred EEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEE
Q 001396 802 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISK 875 (1086)
Q Consensus 802 l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~ 875 (1086)
+=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....+++++ +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567887765554 4778899999888877766433 456789999 888888776322 222222222111111
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC----CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--e
Q 001396 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 949 (1086)
Q Consensus 876 l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 949 (1086)
+.-. .+ -++.++|++... .++.|.+.|..+ +. .....+.... ....+++||||++++++ .
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 1100 00 133457887665 367799999887 22 1222333332 35679999999999984 5
Q ss_pred CCeEEEEEcCCccc------------eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 950 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 950 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
++++.|.|+.+.+. +.+... .......+|.++|....|-.-|..|..|++..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999987553 222222 33445678999999888999999999999987
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00013 Score=70.53 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=95.6
Q ss_pred ecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEE
Q 001396 336 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 415 (1086)
Q Consensus 336 ~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 415 (1086)
.-+|.+.+++.||..+.+.--|..+|+...+..+ +..|.+-+.- -|.+++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il--------------------g~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--------------------GVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh--------------------CceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3455667899999999999999999987754211 1233332222 477899999999999
Q ss_pred EEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccE
Q 001396 416 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 495 (1086)
Q Consensus 416 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 495 (1086)
+.+.++|+.......+..- . ......+++. ++..|+.|++.+..|..+..++...+...+...+-++.+- + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999999765533222111 1 1234566778 8999999999999999999999887654443333344322 2 24
Q ss_pred EEEEEcCCeEEEE
Q 001396 496 IFSISVDGKIKAW 508 (1086)
Q Consensus 496 l~s~s~dg~i~vw 508 (1086)
|+.+...|.+.--
T Consensus 150 ly~a~t~G~vlav 162 (354)
T KOG4649|consen 150 LYAAITAGAVLAV 162 (354)
T ss_pred EEEEeccceEEEE
Confidence 5555555554433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00012 Score=86.09 Aligned_cols=243 Identities=14% Similarity=0.166 Sum_probs=143.5
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
..|.++.|..+.+.++.+...|.|.+-|..+......-.... .|.+++|+||+..++..+.++++.+.... -.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~---GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDN---GISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccC---ceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 589999999999999999999999999888766544333333 48999999999999999998888775432 11110
Q ss_pred eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceE
Q 001396 653 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS 732 (1086)
Q Consensus 653 ~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~ 732 (1086)
.-.-+. ...+.+....+|++...-.|.|. ..+
T Consensus 145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs------------------------------------------~gr 176 (1265)
T KOG1920|consen 145 EKPLDA------DDERKSKFVNVGWGRKETQFRGS------------------------------------------EGR 176 (1265)
T ss_pred cccccc------ccccccccceecccccceeeecc------------------------------------------hhh
Confidence 000000 00000011111111111111000 000
Q ss_pred EEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEE
Q 001396 733 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 812 (1086)
Q Consensus 733 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 812 (1086)
..+.-+ ...... +.+....+.-+.+.|--||+++|
T Consensus 177 ~~~~~~-----------------------------------------~~~ek~----~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 177 QAARQK-----------------------------------------IEKEKA----LEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred hccccc-----------------------------------------cccccc----ccchhhccCCceEEEccCCcEEE
Confidence 000000 000000 00000122334688999999999
Q ss_pred EEe-----C-CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---ceeEEEecccc
Q 001396 813 SAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHS 880 (1086)
Q Consensus 813 ~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h~ 880 (1086)
+.. + .+|+|||-+ |..-..-....+.-.+++|-| .|.++|+-. +|+.|.++.-.. |+..-.+....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 853 4 679999987 444333333334557899999 888888753 455799987653 22333334444
Q ss_pred CCeEEEEEeCCCCEEEE---EeCCCcEEEEECCCCce
Q 001396 881 KRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 881 ~~v~~l~~spdg~~l~s---~s~dg~i~iwd~~~~~~ 914 (1086)
.+|..++|+.++..||+ ......|++|-+.+..-
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 55999999999999998 55555699999988553
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00015 Score=80.18 Aligned_cols=259 Identities=17% Similarity=0.214 Sum_probs=135.7
Q ss_pred cCCCceEEEEE--------eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 337 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 337 spdg~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
|||++++|+.- +..+.+.|||+++++.... ......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 78999765532 2236789999998765532 1224678899999999999999
Q ss_pred eCCCEEEEEEecCCCccccceEecc-------c---------cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
. ++.|.+++..+++..+. +..| - -+.-..+.|||||+++.++. -.+..|..+.+..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~-~d~~~v~~~~~~~---- 132 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR-FDEREVPEYPLPD---- 132 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE-EE-TTS-EEEEEE----
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE-ECCcCCceEEeec----
Confidence 5 56799999887743321 2222 0 12236788999999633332 2344444443210
Q ss_pred EEeecCCc---ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-Ee----cCCCCceEEEEEecCCCEEEEEeeC
Q 001396 473 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 473 ~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~----~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
...... .+..+.+ |.+...- ..-.+.++|+.+++... .. .....-+..+.|.++++.++..-.+
T Consensus 133 --~~~~~~~yp~~~~~~Y-Pk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 133 --YSPPDSQYPEVESIRY-PKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp --ESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred --cCCccccCCccccccc-CCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 001111 1222222 1111100 01135667887766532 21 2344568899999999955444333
Q ss_pred C-CCceeEEEEeCCCCeeeeEEecccccCCce---EEEEEe-cCCCEEEE-EECCCc--EEEEEcCCCeeEEEEcCCCCC
Q 001396 545 K-EGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHV--IKIWDMNKVQLLTTIDAGGGL 616 (1086)
Q Consensus 545 ~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~-~s~dg~--i~iwd~~~~~~~~~~~~~~~~ 616 (1086)
+ .....+.+.|..++.......... ...| ....|. +++..++. ...+|. |++++...+... .+... .
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~ 279 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--D 279 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--S
T ss_pred cCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--c
Confidence 3 335667888988876654443322 2222 244554 66655544 446665 455566555533 33221 2
Q ss_pred CCCc-eEEEecCCCEEEEEEC
Q 001396 617 PENP-RICFNKNGTLLAVIAN 636 (1086)
Q Consensus 617 ~~v~-~v~~s~~~~~l~~~~~ 636 (1086)
-.|. -+.++++++.++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEES
T ss_pred eeecccceEcCCCCEEEEEec
Confidence 2343 3667777666554433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-07 Score=87.02 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=99.9
Q ss_pred cHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001396 31 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 110 (1086)
Q Consensus 31 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~ 110 (1086)
+...++++|++||++.|+..+.....--..... .+.|.|++|+|+|+|..++..+|+.+.|++|.|......+.++++.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 567899999999999999998876211111122 2889999999999999999999999999999776543567788999
Q ss_pred HHhccccccc--ccccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhh
Q 001396 111 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 177 (1086)
Q Consensus 111 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 177 (1086)
.+|...+..+ ...+..... ...|+.+.+.+...+-.. ..+| +.+.|..++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~------~~~~--~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKS------YGLP--KESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHH------hCcC--CCCHHHHHHHHHHHHh
Confidence 9998877654 223333223 367899999888876662 2222 3567888888766544
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-05 Score=82.37 Aligned_cols=251 Identities=13% Similarity=0.163 Sum_probs=149.0
Q ss_pred eecCCCccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
++.+|...|..++|||..+ ++..++.+..|+|.|+++..++. .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5888999999999999877 78889999999999999976554 45556 78999999999877 8899999999999
Q ss_pred EeCCCCce-eEEeec--CCcceEEEeeccc----CCccEEEEEEcCCeEEEEEcCCCce--eEEec-CCCCceEEEEEec
Q 001396 464 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA 533 (1086)
Q Consensus 464 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~ 533 (1086)
||++..+- +..+.+ ...+|..++..+. ..+.+|+..+.+ +..|.+..... ..... ...+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 233322 2334444432211 122344443333 34455433222 22222 2244566777777
Q ss_pred CCCEEEEEeeCCCCceeE----EEEeCCCCeeeeEEe----cccc-cCCceEEEEEecCCCEEEE-EECCCcEEEEEcCC
Q 001396 534 NGRRLFSCGTSKEGESFL----VEWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 603 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i----~iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 603 (1086)
-.+.++........--++ .-.|..+|..+..-+ +... ....-..+.-.+++++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 667666655432111111 112223333322211 1000 0011112223455566665 55678899999999
Q ss_pred CeeEEEEcCCCCCCCCceEEEec-CC-CEEEEEECCCcEEEEECC
Q 001396 604 VQLLTTIDAGGGLPENPRICFNK-NG-TLLAVIANENRIKILETP 646 (1086)
Q Consensus 604 ~~~~~~~~~~~~~~~v~~v~~s~-~~-~~l~~~~~dg~i~iw~~~ 646 (1086)
++.++++.... .+..++... ++ .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998763 355555443 33 3555554 4578887654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-06 Score=88.14 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=175.1
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 467 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~ 467 (1086)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.|+. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777776555 567999999999999998654222222224668899999999999998 7888777 9999999988
Q ss_pred CCceeEEeecCCcceEEEeeccc-CCc--cEEEEEEcCCeEEEEEcCCCcee--EEecCCCCceEEEEEecCCCEEEEEe
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAK-ENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~-~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+-..+.-++...-| ..++|..+ ++- ..-++.-.+|.+.++|-....+. ..-..|..+|..+.+.+-+..+++..
T Consensus 85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 76554333211111 11122112 111 22333456788999987655533 24456788999999999999988875
Q ss_pred eCCCCceeEEEEeCCC------CeeeeEEe------cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 543 TSKEGESFLVEWNESE------GAIKRTYQ------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~------~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
. .|.|.-|.... .+..-.++ +.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus 164 ~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 I----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred c----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 4 67899998763 11111111 11112356789999999999999999999999999998766544
Q ss_pred cCCC-------------------------------CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 611 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 611 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
.... +...-..++|...|++|+.++-=| |++.++.+++..+.+.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 2110 011224577888899998887754 8899999887776553
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-05 Score=89.05 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=76.3
Q ss_pred EeecCCCEEEEEeCCeEEEEEccC-----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCcee----
Q 001396 803 ALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 872 (1086)
Q Consensus 803 ~~s~dg~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~---- 872 (1086)
++.+||++... .++.|.+.|..+ .+.+..+. -......++++| ||++++++ ..+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34557876665 467899999988 34444444 556778999999 77766654 5588999999987542
Q ss_pred --------EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 873 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 873 --------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
+.+.+--.+ ....+|.++|+...|..-|..|..|++..
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 334333223 34578999999999999999999999986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-05 Score=89.81 Aligned_cols=283 Identities=11% Similarity=0.160 Sum_probs=162.9
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
..+.|.++.|--++.. +..+..+|.|.+-|.++....- ...-...|.+++||||++.+|
T Consensus 67 gd~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence 3469999999999985 7778888999999988876543 223457899999999999999
Q ss_pred EEeCCCEEEEEEecCCCccccceEec---cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeecCCcce
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPV 482 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 482 (1086)
..+..+++.+-+-. -..+... .+. ...+....+.|-....+ +.|+ .|....-+.... +.+.....+ +.=
T Consensus 126 liT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~ 198 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHK 198 (1265)
T ss_pred EEeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCC
Confidence 99988877664421 1111100 010 00112223334332221 1111 111111110000 000000111 122
Q ss_pred EEEeecccCCccEEEEE-----EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 483 YSLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
++++| ..||+++++. .....|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++...
T Consensus 199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 34566 6688888883 333789999876 3333333334445568999999999998876544 5578888743
Q ss_pred CCeeeeEEeccc-ccCCceEEEEEecCCCEEEE---EECCCcEEEEEcCCCeeEE--EEcCCCCCCCCceEEEecC-CCE
Q 001396 558 EGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLLT--TIDAGGGLPENPRICFNKN-GTL 630 (1086)
Q Consensus 558 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~-~~~ 630 (1086)
|-.-..|.... .....+..++|+.++..|++ ......|++|-+.+..... .+..... .-+.|+|. ...
T Consensus 275 -GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 -GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKT 349 (1265)
T ss_pred -CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCcee
Confidence 33222222111 01144899999999998887 4455569999998765432 3332221 22778883 234
Q ss_pred EEEEECCCcEEEEECC
Q 001396 631 LAVIANENRIKILETP 646 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~ 646 (1086)
+.+...+|...+++..
T Consensus 350 L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEecCCcEEEEEEE
Confidence 4444466666665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-07 Score=63.07 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-05 Score=84.87 Aligned_cols=285 Identities=12% Similarity=0.093 Sum_probs=163.8
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
|...|.--+++..+++ ++.|+.-|.+.+|+-.+|+.+... ..+-.+.+..+.+|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 3446777778888886 899999999999999888876531 233456777888999999999
Q ss_pred EEeCCCEEEEEEecCCCccccceE---eccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 479 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 479 (1086)
+|+..|.|.|+-+..+........ -..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999887443222111 123678999999999999 7999999999998887762 1123333455
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc--eEEEEEecC----CCEEEEEeeCCCCceeEEE
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--CTRMAYSAN----GRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--i~~~~~s~d----~~~l~~~~~~~~~~~~i~i 553 (1086)
+.|..+... ++.+|++...- ..+++.+.......-+..... -...+|-|. .+-.+.|+.. -.++
T Consensus 171 s~IVQlD~~---q~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP-----G~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLTR--CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP-----GLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhhh--hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC-----CCce
Confidence 666666542 22333333322 223433332221111111111 234455443 3334444432 2677
Q ss_pred EeCC-CCeeeeEEecccc------cCCceEE---------------EEE----ecCCCEEEEEECCCcEEEEEcCCCeeE
Q 001396 554 WNES-EGAIKRTYQGLQL------QHNSVSV---------------VHF----DTAKDQILAAGDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 554 wd~~-~~~~~~~~~~~~~------~~~~v~~---------------~~~----~~~~~~l~~~s~dg~i~iwd~~~~~~~ 607 (1086)
|..+ .|+.+++.+-... ....+.+ +.| .-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8655 3555444321110 0000000 000 01122455544444 888888776655
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.-..... .|..+ +..++-|++-..|+.+++..+.+.
T Consensus 320 l~se~~~---DI~dV--s~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 320 LWSEGGH---DILDV--SHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EeecCCC---ceeEE--eecCceEEEEecCCceeEEEeehh
Confidence 4443222 23333 334666666667776666665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-07 Score=62.33 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEe
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 357 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd 357 (1086)
++++++.+|.+.|++++|+|+++ ++++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46789999999999999999998 599999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00038 Score=77.03 Aligned_cols=303 Identities=13% Similarity=0.109 Sum_probs=157.4
Q ss_pred ecCCCEEEEEeeCC-----CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 532 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 532 s~d~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888887643211 1245699999999876555444 3 5788899999999998886 47899999888754
Q ss_pred EEEEcCCCC----------------CCCCceEEEecCCCEEEEEECC-CcEEEEECC---CCCeeeeccccccceeeeEE
Q 001396 607 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 607 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~ 666 (1086)
.+... .+. ...-..+.||||+++|+....| ..|..+.+. .... .-..+..+.+
T Consensus 76 ~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y 148 (353)
T PF00930_consen 76 TQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY 148 (353)
T ss_dssp EESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred EEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence 43222 110 1223578999999999876543 334433322 1100 0001111222
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccc--eeeeeecCCccccccccC--CcccccceEEEEEecCCce
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE--VEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA 742 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~--vw~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~ 742 (1086)
. ..|..+..++ ++++...+.. .+..+ ......-+..+.|++++..
T Consensus 149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence 1 1122222222 3333322211 11111 0123556889999999984
Q ss_pred EEEeecc---ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEee-cCCCEEEEEe--C
Q 001396 743 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G 816 (1086)
Q Consensus 743 l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~--d 816 (1086)
++....+ ..+.+. +.|+.++.+.........+--.......+. +++..++..+ +
T Consensus 198 l~~~~~nR~q~~~~l~--------------------~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLV--------------------LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTSTEEEEE--------------------EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred EEEEEcccCCCEEEEE--------------------EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 4443322 222222 233444433322222111122223356665 7776666655 4
Q ss_pred C--eEEEEEccCceEEEEEcCCCCCeEE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEeccccCCeEEEEEe
Q 001396 817 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS 889 (1086)
Q Consensus 817 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~v~~l~~s 889 (1086)
| .|.+++..++.. ..+....-.|+. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.||
T Consensus 258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS 336 (353)
T ss_dssp SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence 4 477777776663 455555666755 678884455556666533 66666677233445555433333689999
Q ss_pred CCCCEEEEE
Q 001396 890 DALNILVSS 898 (1086)
Q Consensus 890 pdg~~l~s~ 898 (1086)
|+|++++-.
T Consensus 337 pdg~y~v~~ 345 (353)
T PF00930_consen 337 PDGKYYVDT 345 (353)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-06 Score=93.00 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=130.7
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEE
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 885 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~ 885 (1086)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334455554 577888999998888777655555555544 6789999999999999999999999999999999976
Q ss_pred EEEeCCCCEEEEEeC---------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC--CEEEEEeCCeEE
Q 001396 886 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA 954 (1086)
Q Consensus 886 l~~spdg~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~d~~i~ 954 (1086)
+.. .|+.|+++|. |.-|+|||+..-+... .++.+.+ ..-+.|.|.- +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 555 6899999986 4458999998744222 3333333 2346777753 334447888888
Q ss_pred EEEcC---CccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 955 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 955 vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
+-|.. ....-......-...+..+++|++|..++.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88833 22111111222255699999999999999999999999998
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.7e-06 Score=80.17 Aligned_cols=195 Identities=15% Similarity=0.204 Sum_probs=118.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCce-eEEEecc-ccCCeEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCceeeeeeee
Q 001396 849 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 921 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~v~~l~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~ 921 (1086)
-+.-++++..||.+.+++.+.-. ...++.. |.+. -+.+....++.+.+++ .-+..++|+++...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-------- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-------- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence 45678999999999999876521 1111111 2221 1222333444444332 12235667766522
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC-CCCEEEEEECCCcEEE
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~s~~~Dg~v~v 998 (1086)
.+.........|++++-.|....+++ +.||.+.+||.+.......++..|..+|+.+-|.| ++..|+++++||.+--
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11111111134888999998776665 47889999999999888888889999999999999 6789999999999999
Q ss_pred EEcCCCceeeeecc---ccccCCCCccCcc--------cceEE-EECCCCCCEEEEEeCCCcEEEEc
Q 001396 999 HEASNLEVQCRILS---TAYLRPTTSCLHV--------YPHAI-AAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 999 Wd~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~-~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
||..+.-+-...+. ..|+....-.+.+ ...++ .|+- -|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 99885322211111 1122211101100 01122 2333 367899999999998875
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0012 Score=70.18 Aligned_cols=279 Identities=13% Similarity=0.123 Sum_probs=139.7
Q ss_pred eeecCCCceEEEEEeccCc--EEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEECCCCCEEEEEeC
Q 001396 334 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~ 410 (1086)
=+|.+||++||.++..||. +.+-|+.+++... |+... .......++|+++.++....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 3789999988888877765 6667788887654 33322 22224667899999887767
Q ss_pred CCEEEEEEecCCCccccceEeccccccEeEEEec--CCCCcEEEEEEe----------------------CCCcEEEEeC
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA 466 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s--~d~~~l~l~s~~----------------------~d~~i~iwd~ 466 (1086)
...++--|+++.+... .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7789999999876322 233444445445553 3455 333221 1234556678
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEE---cCCe-EEEEEcCCCcee-EEecCC--CCceEEEEEecCCCEEE
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGK-IKAWLYDSLGAR-VDYDAP--GLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~-i~vwd~~~~~~~-~~~~~~--~~~i~~~~~s~d~~~l~ 539 (1086)
.+|+....+. ....+..+.|+|... .+|.-|- .+.. -|+|-++..... ..+..+ ...+..=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8877544443 556677778876533 3343332 2222 367766543332 222221 22344556899999888
Q ss_pred EEee-CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC----------------CcEEEEEcC
Q 001396 540 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN 602 (1086)
Q Consensus 540 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~ 602 (1086)
..+. .+..+..|.-+|+.+++....... .....+--++||++++.=+.| --|+++++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 7554 334467888999998876443332 234455567888877663322 156778888
Q ss_pred CCeeEEEEcCC--------CCCCCCceEEEecCCCEEEEEEC-CCcEEEEE
Q 001396 603 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE 644 (1086)
Q Consensus 603 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~ 644 (1086)
.+......... .....-....|+|||+.++..++ .|...||-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 77654322211 01112357899999998877665 56666654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-06 Score=84.90 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=110.3
Q ss_pred EEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCc
Q 001396 854 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 933 (1086)
Q Consensus 854 asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 933 (1086)
++.+.+-.|-+-|+.+|-. ..|. ..+.|.++.|.-.+.++..|...|.|...|+.........+.+.+.... .|
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~S----sv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDS----SV 301 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCc----ch
Confidence 4445567788999988743 3333 5567889999988899999999999999999875433333333332222 47
Q ss_pred eEEEEec-CCCEEEE-EeCCeEEEEEcCCccc---eeccccCCccCEEEE--EEeCCCCEEEEEECCCcEEEEEcCCCce
Q 001396 934 THIQFHK-DQTRFLL-VHETHLAIYEAEELTC---LKQWFPISSVPISQA--TFSCDCRMVFTSFVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 934 ~~~~~s~-dg~~l~~-~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~l--~fs~dg~~l~s~~~Dg~v~vWd~~~~~~ 1006 (1086)
+++..-. ++.+|.+ +.+|+|++||.+--++ +.+ ..||...-..+ ...+....++++|.|+..|||.++.|.+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q-YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ-YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceee-eecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 7777665 6666666 7999999999986666 665 56774333333 3345667899999999999999999999
Q ss_pred eeeec
Q 001396 1007 QCRIL 1011 (1086)
Q Consensus 1007 ~~~~~ 1011 (1086)
++++.
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 98886
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=80.95 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=127.6
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc-----EEEEeCCCC--
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-----IKVWDAVTG-- 469 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-----i~iwd~~~~-- 469 (1086)
+|++.+..+|.|+.+|.|.+.+-. . +....+..+...+...-+.-+++. +|++.+.|+. ++|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~--~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--F--QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--c--eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 468899999999999977776632 2 222246666666333334444433 6777776654 899998632
Q ss_pred ----cee--EEeec-----CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC---CceeE-EecCCCCceEEEEEecC
Q 001396 470 ----SRT--YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARV-DYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 470 ----~~~--~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~-~~~~~~~~i~~~~~s~d 534 (1086)
.++ +.+.. ...++.+++++. +-..++.|-.+|.|..+.-+- ..... .......+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 12222 245677777754 567899999999999984322 12222 23344568999999999
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCee-eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
++.++.+.. ...|.+|.+....+ ...+..+ ...++|..+++....+++++. ..+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNN---GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe----cceeEEEEecCCCcceeeeccC---CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 988332222 34588888874442 2223433 378899999887765666654 468999987655555554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00012 Score=75.31 Aligned_cols=250 Identities=12% Similarity=0.100 Sum_probs=143.5
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
.+.+.+|...|..++|||..+-|+..++.+.+|.|.|+++...+.. +..| ..+.+++|.-
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl 245 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL 245 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence 3467889999999999998876789999999999999999877754 3334 7899999998
Q ss_pred CCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEe------cCCCCcEEEEEEeCCCcEEEEeCCC--Cce
Q 001396 401 DGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR 471 (1086)
Q Consensus 401 dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~------s~d~~~l~l~s~~~d~~i~iwd~~~--~~~ 471 (1086)
|.. +|..|..+|.|.|||+...+.......-.-...+|..++. .+-|. +++..+.+ +..|++.- +..
T Consensus 246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence 754 5667778899999999876543321111112334444443 33344 44444433 55666432 222
Q ss_pred eEEee-cCCcceEEEeecccCCccEEEEEEcCCe------EEE-EEcCCCceeEEe-cCC-CC------ceEEEEEecCC
Q 001396 472 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG 535 (1086)
Q Consensus 472 ~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~------i~v-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~d~ 535 (1086)
...+. +..+...++..++..+ +.|++.-.+.+ |-. -|...+..+... ..+ +. .-..+.-.++.
T Consensus 322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 22221 2344555666554333 34444433210 000 111122111111 001 11 11122223556
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++++..+. ..+.+.+||..+++.++++.... +|..++... ++.-++..-.|..++||..+
T Consensus 401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence 66665543 36789999999999999988743 676666543 33334444455667777643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0018 Score=74.84 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=81.2
Q ss_pred EEEEEEcCCeEEEEEcCCCceeEEecCCCC------ce--EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001396 495 FIFSISVDGKIKAWLYDSLGARVDYDAPGL------GC--TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~i--~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
.++.++.++.|.-.|..+++.+..+..... .+ ..+++ .++..++.+.. ++.|+-+|.++|+.+-.+.
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~----~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTF----DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecC----CCeEEEEECCCCCEeeeec
Confidence 677788889999999988888776654332 00 01111 12245555543 6789999999999887776
Q ss_pred ccccc--CCce-EEEEEecCCCEEEEEE---------CCCcEEEEEcCCCeeEEEEcCCCCC------------------
Q 001396 567 GLQLQ--HNSV-SVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGL------------------ 616 (1086)
Q Consensus 567 ~~~~~--~~~v-~~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~------------------ 616 (1086)
..... ...+ .+..+. +..++.++ .+|.++.+|..+|+.+.........
T Consensus 138 ~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 53300 0001 111222 24455554 3688999999999988877543110
Q ss_pred CCC-ceEEEecCCCEEEEEECCC
Q 001396 617 PEN-PRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 617 ~~v-~~v~~s~~~~~l~~~~~dg 638 (1086)
..+ ...++.+.+.++++++.++
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g 238 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNG 238 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCC
Confidence 001 1345555567788887665
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.9e-07 Score=67.77 Aligned_cols=54 Identities=33% Similarity=0.557 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCHHHHHHhhccCcccccccccceehhhhhhhhhhhhcCCCCH
Q 001396 30 FDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 84 (1086)
Q Consensus 30 ~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 84 (1086)
.++..++++|++|+|+.|++.+............ .+.|.|++|+|+||++.++.
T Consensus 3 ~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 3 DERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999887433322333 39999999999999988764
|
Alpha-helical motif of unknown function. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=87.37 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=142.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
.++.|+-...+..+|+.+++..+......+.|.-|+. +++.+.+|...|+|.+-|..+.+.+.++..|.+.+. .
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence 5777888888999999999888777656656777754 667999999999999999999999999999999885 4
Q ss_pred EecCCCEEEEEeeCCC-----CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCC-
Q 001396 531 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 603 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~- 603 (1086)
|+-.|+.|++||.+.. .|..|.+||++..+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 6678999999987542 36789999999887766665544 22 44667776 35678888899999988432
Q ss_pred Cee-EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 604 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 604 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+ ......+...+.+..+.++++|..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 2222222223458899999999999999999999999843
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0001 Score=82.71 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=129.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 917 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~ 917 (1086)
..++|++++ +++++-|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||.|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777775 4699999999999999987 344 444446554 56899999999999999999988654332
Q ss_pred eeeeccCCCccCCCCceEEEEecC-----CCEEEEEeCCeEEEEEcCCcc-ceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 918 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 918 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
..++ .++.+++++|| .+.+++|+...+.++.-.=.. ..........++|.++.| .|.++|=++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 2222 25889999998 566777544447777643111 111112234789999988 467888887
Q ss_pred CCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 992 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 992 ~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.+| |+|||+.+++.+..+.+....+. ...++..+.|.+ ...|+. |...+|.+..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence 776 99999999999988774442211 234456688986 344444 566678888887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00045 Score=78.31 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=134.5
Q ss_pred EEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc----
Q 001396 802 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 870 (1086)
Q Consensus 802 l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~---- 870 (1086)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |..+-... +..+|++.+.|+ .|+||++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888888887 688877764 34555777777766 44444433 456888877765 5899998643
Q ss_pred --eeE--EEecc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 871 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 871 --~~~--~~l~~-----h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
+++ ..+.. ...++.+++.|.+-+.+|.|-.+|.|..+.=+--..+..+..-...+. ++|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 11222 345788999999999999999999998875332111111111122222 47999999999
Q ss_pred CCE-EEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 942 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 942 g~~-l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
++. +.++.-..|.+|.+............|...+.+..|++....+++++ +..+.+|+.+.......|.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 988 55567788999999843323333556788888888887655466554 4579999988655544443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00033 Score=78.81 Aligned_cols=185 Identities=12% Similarity=0.134 Sum_probs=123.3
Q ss_pred eEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCE
Q 001396 731 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 810 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 810 (1086)
+.+.+++ ++.++.|+.+|.+++++.+.+.. +.. .|... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------~~~----------~~s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------TNF----------DHSSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc------------------ccc----------ccccc------ccCCce
Confidence 3444443 56788899999999887654310 000 02211 568999
Q ss_pred EEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCc--eeEEEeccccCCe
Q 001396 811 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRV 883 (1086)
Q Consensus 811 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~v 883 (1086)
+++++ ||+|.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-.-- +....+..-.|+|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 7999999998888777665 5578999999993 256888899888 777753321 1112355567899
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcC
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 959 (1086)
.++.|. |.++|-++.+| |+|||+......+ .++.+............+.|.++.+ |+.|-..+|+|..++
T Consensus 164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999995 88999999888 9999998855333 2222222111112234566666554 666777778888877
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0074 Score=64.34 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=114.0
Q ss_pred EEECCCCCEEEEEeC---CCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 396 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 396 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
=+|.+||+.|+.++. ...+.+.|+.+++..+ +..+. .......++++++ .++-......++--|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 357889988887765 4468888888876443 33332 2233567788888 454444556899999999887
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEc----------------------CCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
...+......+-...+..+.|+..++..-. ...|.--|+.+++....+. ....+..+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 666666666666666665667666544321 1234445666655444443 44567788
Q ss_pred EEecCC-CEEEEEeeCCC--CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-----CCCcEEEEEc
Q 001396 530 AYSANG-RRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 601 (1086)
Q Consensus 530 ~~s~d~-~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----~dg~i~iwd~ 601 (1086)
.|+|.. ..|+.|....- .+..|.+.+.... ..+.+..+. ....+..=.|.|||..|.--+ .+..|.-+|+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 999955 45555554321 1234544454333 233333222 123455567899998876632 3446777888
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 602 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 602 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
.+++........ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887655433322 23456667888877654443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.014 Score=66.60 Aligned_cols=251 Identities=15% Similarity=0.101 Sum_probs=139.2
Q ss_pred CceEeeecCCCceEEEEEeccCc----EEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGD----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+....+||||++++.+-+..|. +++.|+.+|+.+.. .+ .. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence 34467899999976666555554 99999999977653 11 11 112239999999888
Q ss_pred EEEeCC-----------CEEEEEEecCCCccccceEecccccc--EeEEEecCCCCcEEEEEEeCC--CcEEEEeCCCC-
Q 001396 406 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG- 469 (1086)
Q Consensus 406 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~s~d~~~l~l~s~~~d--~~i~iwd~~~~- 469 (1086)
+....+ ..|+.|++.++..-. ...+.+.... ...+..++|++.+++.+.+.. ..+.+.|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 776432 247788877664321 1234443333 568899999996433333322 35788888775
Q ss_pred ---ceeEEeecCCcce-EEEeecccCCccEEEEE---EcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCCEEE
Q 001396 470 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 470 ---~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~---s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
.....+......+ ..+... ++.+++.. ...+.|...++..... ...+..+...+.-..+...+++|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333443333333 333322 33333333 2345677777777653 224444444333334445566666
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE--EE--CCCcEEEEEcCCCeeE
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~ 607 (1086)
.... .++...|+++++..+.......... .+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 3457789999998445545554433 245666666666665543 22 3467888888887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00037 Score=76.44 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=83.2
Q ss_pred CCCeeEEEeec-CCCEEEEEe-----CCe----EEEEEccCceEEEE---EcCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001396 796 QEAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI 862 (1086)
Q Consensus 796 ~~~v~~l~~s~-dg~~l~~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v 862 (1086)
+....++.||. +...+.+.. +|. ..+|++...+..+. --.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 34446777776 344444432 232 56777765543221 123667899999999 88999999999999
Q ss_pred EEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 863 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
.+||...+... +..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999876332 22344567889999999999999999999999987533
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.045 Score=63.55 Aligned_cols=110 Identities=9% Similarity=0.072 Sum_probs=65.7
Q ss_pred EEEEEEcCCeEEEEEcCCCceeEEecCCCC-ceE----------EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 495 FIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCT----------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~----------~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
.++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++. ++.+.-.|..+|+.+-
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVVW 144 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEEe
Confidence 677777788888888888888776654221 111 1122 2234555443 6679999999999876
Q ss_pred EEecccccC-CceEE-EEEecCCCEEEEEE------CCCcEEEEEcCCCeeEEEEcC
Q 001396 564 TYQGLQLQH-NSVSV-VHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 564 ~~~~~~~~~-~~v~~-~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
......... ..+.+ -... + ..++.+. .+|.|+.+|.++|+.+-....
T Consensus 145 ~~~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ecccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 655321000 11111 1111 3 3555543 268999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0038 Score=72.24 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=139.8
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC---ccEE-EEEECCCCCEEEEEe---------C
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG---VSVN-RVVWSPDGSLLGVAY---------S 410 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~-~l~~spdg~~las~~---------~ 410 (1086)
++.++.++.|.-+|.++|+.+-..... .+. ..+. ...+ .+..++.++ .
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~ 173 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGV 173 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEE--ECCEEEEeccccccccCCC
Confidence 667788999999999999987653321 110 0010 1111 123444443 3
Q ss_pred CCEEEEEEecCCCccccceEecc----------------cc-ccE-eEEEecCCCCcEEEEEEeCCC-------------
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK------------- 459 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~v~~s~d~~~l~l~s~~~d~------------- 459 (1086)
++.+.-+|..+|+.+-....... +. ..| ...++.+.+. .++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCC
Confidence 67888889888876442211000 00 011 1234444455 455565444
Q ss_pred -----cEEEEeCCCCceeEEeecCCcceE------EEeecc--cCCc---cEEEEEEcCCeEEEEEcCCCceeEEecCCC
Q 001396 460 -----TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 460 -----~i~iwd~~~~~~~~~~~~h~~~v~------~~~~~~--~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 523 (1086)
.|.-.|.++|+.+..++.-..... ...+.. .-++ ..++.++.+|.+...|.++++.+.......
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 799999999999877642111110 001100 0122 267888899999999999999887654321
Q ss_pred CceEEEEEecCCCEEEEEeeC--------------CCCceeEEEEeCCCCeeeeEEecccccC-----CceEEEEEecCC
Q 001396 524 LGCTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAK 584 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~ 584 (1086)
..++.+| ..++..... ...++.+.-.|..+|+.+-......... .+...-.....+
T Consensus 332 ---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 332 ---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred ---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 1123333 333332110 1235678899999998776665431000 011111111245
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
..+++++.||.|+.+|..+|+.+...+....
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 7889999999999999999999988876543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.2e-05 Score=77.32 Aligned_cols=165 Identities=18% Similarity=0.286 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhhhccCchhhhhh--------------ccccHHHHHHHHhCCCHHHHHHhhccCc-ccccccccceehhh
Q 001396 5 NKDLVFLILQFLNEEGFTESAHI--------------FYFDMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 69 (1086)
Q Consensus 5 ~~evvrli~q~L~~~G~~~s~~~--------------~~~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 69 (1086)
+.-+-|+|..+|.-+||..+|.. ....+...+++|++|+...|+...+... .|. +....+-|-
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 44567999999999999999988 2235667889999999999998876552 222 222338899
Q ss_pred hhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccCCChHHHHHHHH--HHHhhcc
Q 001396 70 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMML--ELKQIIE 147 (1086)
Q Consensus 70 i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~ 147 (1086)
++.|.|+||+..+++.+|+++.+++|.|......++++....+|.++...+... +.+-....|=..+. .++.+.+
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~ 269 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALK 269 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999998777888999999999865332211 11111233433333 4555444
Q ss_pred cCccccccccCCCCCchHHHHHHHHhHHhhhh-cCCC
Q 001396 148 ANPILQGKLKFPSIKRQRLRRLINQSLNWQHV-HCAN 183 (1086)
Q Consensus 148 ~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~-~c~~ 183 (1086)
- +.+|+ ..+|..+|+--+..|.. .|..
T Consensus 270 l-------~~i~~--~~~L~~~l~~GLsalKTp~c~~ 297 (389)
T KOG0396|consen 270 L-------FGIPI--NPALTIYLQAGLSALKTPRCLN 297 (389)
T ss_pred H-------hCCCC--CcHHHHHHHhhhhhcccccccc
Confidence 3 12221 33688888877777755 3433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0017 Score=75.54 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=119.2
Q ss_pred CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCC-CcEEEE-
Q 001396 838 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVW- 907 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g~i~iw- 907 (1086)
..+.+.++|| +|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.+++.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776554 243 55555643 3332223332 37889999999988877533 222222
Q ss_pred ----------ECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEE---EEcCCccc-e---eccccC
Q 001396 908 ----------DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPI 970 (1086)
Q Consensus 908 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v---wd~~~~~~-~---~~~~~~ 970 (1086)
+++.++... ...+.|..+.|||||+.+|...+++|++ -....|+. + ..+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 333322110 1124699999999999999966788877 45455541 1 111222
Q ss_pred CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001396 971 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1050 (1086)
Q Consensus 971 h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~ 1050 (1086)
-...+.++.|..++.++ ++..++...+|.+.-.-...... +.. +-.....+++-.| ..+.+++.+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-----~~~--n~~~~v~~vaa~~---~~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-----PSR--NLSAPVVAVAASP---STVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-----CCC--CccCceEEEecCC---ceEEEEcCCceEE
Confidence 23446889999999855 55555555566544322211110 111 1111234566665 3566777777555
Q ss_pred EEccCCCCCCCCCCCcccccCCC
Q 001396 1051 VIEPNEPGDTWAVLPPDEIVGDQ 1073 (1086)
Q Consensus 1051 vw~~~~~~~~~~~~~p~~~~~~~ 1073 (1086)
+=.-......|...|+..-....
T Consensus 564 l~~~~~~~~~W~ev~~l~g~~~~ 586 (591)
T PRK13616 564 LPNSDSGDQYWREVPGLMGPRAA 586 (591)
T ss_pred ecCCCCCCCCceECccccCCCcc
Confidence 44334445678877776654443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0036 Score=69.00 Aligned_cols=278 Identities=13% Similarity=0.129 Sum_probs=142.7
Q ss_pred ceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 730 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
.|+.+.|+++...++++...|.|.+|++..+......... .-..+.+.+-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~----------------------------~~~~~~~~~~-- 52 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP----------------------------PDLDYNFRRF-- 52 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC----------------------------cccCcccccc--
Confidence 5788999999989999999999999998765431100000 0000000000
Q ss_pred EEEEEeCCeEEEEEcc---------CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--ecc
Q 001396 810 YLFSASGGVISLYIVM---------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG 878 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~ 878 (1086)
...++.-.+-|+. .......+....++|++++.|. =| ++|+|..+|.+.|.|++....+.. +..
T Consensus 53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 0000011111211 1122333444578999999985 44 999999999999999987776644 222
Q ss_pred ------ccCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEECCC-C-ceeeeeeeeccCCCccCCCCceEEE-EecC
Q 001396 879 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD 941 (1086)
Q Consensus 879 ------h~~~v~~l~~sp-----dg---~~l~s~s~dg~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-~s~d 941 (1086)
....|+++.|+- |+ -.|+.|...|.+.+|.+-. . ..-..........+. +.+..+. |+.+
T Consensus 128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~ 204 (395)
T PF08596_consen 128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD 204 (395)
T ss_dssp --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence 234688898872 33 4678889999999998752 1 111111111111111 2344433 4322
Q ss_pred ---------------------CCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEe-----CCCCEEEEEECCCc
Q 001396 942 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGT 995 (1086)
Q Consensus 942 ---------------------g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~s~~~Dg~ 995 (1086)
..+++++.+..++++...+.+...+.. ........+++- ..+..|++-..+|.
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence 125566889999999999888776655 222333444552 35677888999999
Q ss_pred EEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 996 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 996 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
|+++.++..+.+........... -+....++++ +|+.++-.+. ..+.++.+
T Consensus 284 i~i~SLP~Lkei~~~~l~~~~d~------~~~~~ssis~-~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 284 IRIYSLPSLKEIKSVSLPPPLDS------RRLSSSSISR-NGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEETTT--EEEEEE-SS---H------HHHTT-EE-T-TS-EEEE-SS-SEEEEEEE
T ss_pred EEEEECCCchHhhcccCCCcccc------ccccccEECC-CCCEEEEeCc-ccEEEEEE
Confidence 99999999999988773211111 1112344566 5776655544 34444333
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0024 Score=70.28 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=136.2
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceee------ee------------eeeeeeccc------cceeeeeee
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGA------CSMLFKTAL 385 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~------~~------------~~~~~~~~~------~~~~~~~~~ 385 (1086)
.|+++.|+++... ||+|...|.|.||.+...+.-. .. .-.+-|+.. .....+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999775 8999999999999886543221 00 112223322 122344556
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEecc------ccccEeEEEec---C--CC-CcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---A--PC-KQISVI 453 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~s---~--d~-~~l~l~ 453 (1086)
+....++|++++.| |=-++|.|+.+|.+.|.|++....+.. ..+.. ....|+++.|+ . |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 77778999999998 666999999999999999977655432 12222 33468888886 2 22 124788
Q ss_pred EEeCCCcEEEEeCC-C--Ccee----EEeecCCcceEEEeecccCCc-------------------cEEEEEEcCCeEEE
Q 001396 454 TCGDDKTIKVWDAV-T--GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA 507 (1086)
Q Consensus 454 s~~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~v 507 (1086)
.|...|.+.+|.+. . +... .....+.++|..+......+| +-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 2221 112246677766653211111 23555566888999
Q ss_pred EEcCCCceeEEecCCCCceEEEEEe-----cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-cCCceEEEEEe
Q 001396 508 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD 581 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~~~~i~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~ 581 (1086)
+...+.+...........+..+++- ..+..|++... ++.++++.+..-+.+..+..... ....+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888777666554332344445553 34555666554 77899999998877777665320 11234445566
Q ss_pred cCCCEEEEE
Q 001396 582 TAKDQILAA 590 (1086)
Q Consensus 582 ~~~~~l~~~ 590 (1086)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0041 Score=63.30 Aligned_cols=197 Identities=9% Similarity=0.094 Sum_probs=112.6
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.|.+-.+++..++|.|+.+.|+|+....+.|...+. +|+.+.... +.+ .+..-.|++..+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN 75 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence 4566767789999999998778888888899988886 477776533 333 357788999988
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccc-----eEec---cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC---Cc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS 470 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~---~~ 470 (1086)
+.++++--.++.+.++++......... ..+. .+...+-.++|.+.++. |+.+-...-..++.+.. +.
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence 888877767899999998443221111 1111 24456899999999885 44445555555655443 22
Q ss_pred eeEEe--------ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC---------CceEEEEEec
Q 001396 471 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA 533 (1086)
Q Consensus 471 ~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~ 533 (1086)
.+... ......+.++++++. .+++++.......|..+| ..++.+..+.... ...-.|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 21111 113345778888765 567888888888999998 4455444333322 2567899999
Q ss_pred CCCEEEEE
Q 001396 534 NGRRLFSC 541 (1086)
Q Consensus 534 d~~~l~~~ 541 (1086)
+|+..++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=75.15 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=117.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEecc---CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
...+.+..-...+..-+|+|+++.+....-.. ..+.++|+.+++.....+ + .+.-..
T Consensus 183 ~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~~ 242 (425)
T COG0823 183 YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNGA 242 (425)
T ss_pred cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccCC
Confidence 34455565566888889999998744443332 349999999988665422 2 233446
Q ss_pred EEECCCCCEEEEEe-CCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--EEEEeCCCCc
Q 001396 396 VVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGS 470 (1086)
Q Consensus 396 l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~--i~iwd~~~~~ 470 (1086)
.+|||||++||.+. .|| .|++.|+.++...+ +..-.+.-+.-.|+|||+.+ +++.+..|. |.+.|++.+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~i-vf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSKI-VFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCEE-EEEeCCCCCcceEEECCCCCc
Confidence 78999999998874 444 57777888776332 33333333477899999963 344444554 5666766555
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcC-Ce--EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
. ..+....+.-..- ..++||.+++..+.. |. |.+.|+.+... ..............+.++|+.+...+.
T Consensus 318 ~-~riT~~~~~~~~p--~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 318 V-TRLTFSGGGNSNP--VWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred e-eEeeccCCCCcCc--cCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 4 3332222211122 236688888777643 44 55556555543 222222233445678889988887664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0051 Score=67.77 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=80.4
Q ss_pred ceEEEEecC-CCEEEEE-----eCCe----EEEEEcCCcc--ceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 933 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 933 v~~~~~s~d-g~~l~~~-----~d~~----i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
..++.||-. ...+.+. .+|. -.+|+....+ ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 466778763 3444431 2332 4567665443 33333345688999999999999999999999999999
Q ss_pred cCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1001 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
...+..... . ..+.|..++|+| +|..+++|+..|.+.+||+--+
T Consensus 288 ~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 988744422 1 124566899999 7999999999999999997533
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0049 Score=62.79 Aligned_cols=216 Identities=11% Similarity=0.101 Sum_probs=117.1
Q ss_pred EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001396 831 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 831 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 909 (1086)
+.+.+-...+..++|.|+++.++++....+.|..++.. |+.+..+.-. .+..-.|++..++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556667799999999667788888888999999975 7877766432 355888999988888877667999999998
Q ss_pred CCCc--eeee--eeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCC---ccceec-----c--ccCCccC
Q 001396 910 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQ-----W--FPISSVP 974 (1086)
Q Consensus 910 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~---~~~~~~-----~--~~~h~~~ 974 (1086)
.... .... ..+..... ......+..++|++.+..|+++ ...-..+|.+.. +..+.. + .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11221111 1112368999999998777775 444455665543 111110 0 1123567
Q ss_pred EEEEEEeCCC-CEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001396 975 ISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 975 v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw 1052 (1086)
++++.|.|.. .+++.+.....|..+| .+|+.+..+....-... .....-.+-.++|+| +|++.+ .+.-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~g-l~~~~~QpEGIa~d~-~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHG-LSKDIPQPEGIAFDP-DGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T--EEE-EETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccC-cccccCCccEEEECC-CCCEEE-EcCCceEEEe
Confidence 8999999854 5666677778899999 77887766653221100 001122357799998 565544 4566666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0073 Score=59.88 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=143.0
Q ss_pred ceEEEEEecCCCE-EEEEECCCc-EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CcEEEEECC
Q 001396 574 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP 646 (1086)
Q Consensus 574 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~ 646 (1086)
.-..++|+|..++ ++.+-.-|+ ..++|..+.+...++.........-.-.|||||.+|+..-.| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 4456778887554 344555555 578999998888777655443333456799999999876543 678888876
Q ss_pred CC-CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCc
Q 001396 647 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 725 (1086)
Q Consensus 647 ~~-~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 725 (1086)
.+ ..+..+..
T Consensus 149 ~~fqrvgE~~t--------------------------------------------------------------------- 159 (366)
T COG3490 149 EGFQRVGEFST--------------------------------------------------------------------- 159 (366)
T ss_pred cccceeccccc---------------------------------------------------------------------
Confidence 43 11111111
Q ss_pred ccccceEEEEEecCCceEEEeeccceeEEe-eccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEe
Q 001396 726 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 804 (1086)
Q Consensus 726 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 804 (1086)
|.-....+.+.+||+.++.+.. -|... ++...++..+.. .-++.+.+..+|..+....++..-+...|..++.
T Consensus 160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence 2222334566677776554432 23222 221111111100 0123445666666566655653346778999999
Q ss_pred ecCCCEEEEEe-CCe-----EEEEEccCceEEEEEcC-------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 805 SKNDAYLFSAS-GGV-----ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 805 s~dg~~l~~~~-dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
.+||..++.+. .|. --+=-...++.+.-+.- ....|-+++.+.+++-..++.-..+...+||..+|.
T Consensus 234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 99998887664 121 11111123333333322 224678899987455455555555688899999998
Q ss_pred eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 872 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 872 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
.+..-.-- ....++ +.+.-++..+.+|.+.+++
T Consensus 314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence 76543211 112222 2344455566778787773
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.011 Score=66.30 Aligned_cols=199 Identities=17% Similarity=0.175 Sum_probs=111.0
Q ss_pred EEEeecCCCEEEEEeCC------------eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001396 801 CFALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 868 (1086)
.++.+|.|.-+|...+. .|+||+.. |+.+..+.=..+.+.++.|+. +. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC
Confidence 35666666666666544 58999875 556665543348999999997 55 45556789999999987
Q ss_pred Ccee-------EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee-eeeee-eccCCCccC--CCCceE-E
Q 001396 869 SSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSL-QTPDGVMTL--APSETH-I 936 (1086)
Q Consensus 869 ~~~~-------~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~~~~~~--~~~v~~-~ 936 (1086)
|+. +....-....+....+..+|-.+.+ .++.+.+- ...... ..+.+ ..+...... ...... .
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccce
Confidence 333 1111112222333344445533333 34434333 222111 10111 111110000 001111 3
Q ss_pred EEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 937 QFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 937 ~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.++.+....+. ..++.+.+.+....+. . ...+++..++.||+|++||.-..+|.+.|...+-.+..+.+..
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 35555554444 4455566444332211 1 1246899999999999999999999999999888888877763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0027 Score=70.75 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=121.8
Q ss_pred eccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EEEEcCCeEEE
Q 001396 431 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKA 507 (1086)
Q Consensus 431 ~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~v 507 (1086)
+..-...+..-+|+|+++.+..++-...+ .+.++|+.+++....+. ..+.-..-.| ++||+.| ++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~f--spDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAF--SPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccC--CCCCCEEEEEECCCCCccE
Confidence 33445567788999999975555444444 59999999987665543 2222223345 4465555 55566776554
Q ss_pred --EEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 508 --WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 508 --wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
.|+....... +....+.-..-.|+|||+.++..+ ++.+.-.|++++.+.+...+...... .. ..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCCCC
Confidence 5666655333 333333344778999999999886 45667789999988776633332222 12 2667999999
Q ss_pred EEEEEEC-CCc--EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 586 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 586 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+++..+. +|. |.+.|+.++.....+.... ....-.+.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988664 344 6667776666544444322 23456778888877665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0038 Score=69.76 Aligned_cols=223 Identities=10% Similarity=0.070 Sum_probs=118.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+......+..+.++|+|++++++ .+|.-.|+.... .+. ...+.-...+|.+.++ +++-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 33445567899999999999995 577777877322 121 2234556789999665 56666688899974
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
--+.+....++.. ..+..+.. |.+|...+. +.|.+||+++++.+..+... +|..+.|+++|++++..+.
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-- 164 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-- 164 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence 3333333333321 22333321 455555544 48999999999888887755 3889999999999999873
Q ss_pred CCceeEEEEeCCCC-----------eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee--EEEEcC
Q 001396 546 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 612 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 612 (1086)
..+++++.... .......... ..|.+.+|..+ .++-.+.. .++. +-.|+. +..+.
T Consensus 165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld- 232 (443)
T PF04053_consen 165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD- 232 (443)
T ss_dssp ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-
T ss_pred ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-
Confidence 34666653322 0222222212 57888888866 44444444 6665 334433 33332
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
..+.-+.+.++.+.+.....++.+..+.+..
T Consensus 233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2356777888778888888888888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.017 Score=65.92 Aligned_cols=248 Identities=12% Similarity=0.103 Sum_probs=128.6
Q ss_pred cEEEEEECCCCCEEEEE-eCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE-eC--------
Q 001396 392 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD-------- 457 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~-~~-------- 457 (1086)
.+...++||||+++|.+ +.. ..++++|+++|+.+.. .+... ....++|.+|++. ++.+. ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44578899999999977 333 3699999999965432 11111 1223999999985 33333 22
Q ss_pred -CCcEEEEeCCCCcee--EEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCC-----ceeEEecCCCCc
Q 001396 458 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL-----GARVDYDAPGLG 525 (1086)
Q Consensus 458 -d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~-----~~~~~~~~~~~~ 525 (1086)
...|+.|.+.++..- ..+......+..+....+.|+++|+..+.. ..+.+.++... ..........+.
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 224788888777543 445544444322233335677777654433 34677777664 222233323333
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee---eeEEecccccCCceEEEEEecCCCEEEEE-ECCC--cEEEE
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIKIW 599 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg--~i~iw 599 (1086)
...+... +..++..+..+...+.|...++..... ...+..+. ....+..+. ..+.+|+.. ..++ .|+++
T Consensus 280 ~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 280 EYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVS--LFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEE--EETTEEEEEEEETTEEEEEEE
T ss_pred EEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEE--EECCEEEEEEEECCccEEEEE
Confidence 3333333 443443333444567888888887653 22343333 011344444 445555553 3443 58899
Q ss_pred EcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCCe
Q 001396 600 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 650 (1086)
Q Consensus 600 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~ 650 (1086)
++..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 9984555555544322 22344444455554433222 25677788887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.037 Score=64.28 Aligned_cols=291 Identities=10% Similarity=0.054 Sum_probs=158.4
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.++.|.-.|..+|+.+-+.....- ...... . .....-..+++ .+..++.++.++.+.-.|..+|+
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-----~~~~~~--~-~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLP-----DDVIPV--M-CCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCC-----cccccc--c-ccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 55667778999999999998765332100 000000 0 00000001222 23467778889999999999998
Q ss_pred ccccceEecccc--ccEeEEEecCCCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeecCCc----------------
Q 001396 424 DARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGA---------------- 480 (1086)
Q Consensus 424 ~~~~~~~~~~h~--~~v~~v~~s~d~~~l~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~---------------- 480 (1086)
.+-... ...+. ..+++--.--++. +++..+ .+|.|..+|.++|+.+..+..-..
T Consensus 142 ~~W~~~-~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 142 VVWSKK-NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred EEeecc-cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 654321 11111 1121111111343 333222 368999999999998866532111
Q ss_pred ---------------ceE-EEeecccCCccEEEEEEcC-----C-----------eEEEEEcCCCceeEEecCCCCce--
Q 001396 481 ---------------PVY-SLCPHAKENIHFIFSISVD-----G-----------KIKAWLYDSLGARVDYDAPGLGC-- 526 (1086)
Q Consensus 481 ---------------~v~-~~~~~~~~~~~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~i-- 526 (1086)
.+. .+++ ++...+++.+..+ + .|.--|+++++.+..++...+.+
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~--D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD 296 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSY--DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD 296 (527)
T ss_pred ccCCCCCCccccCCCCccCceeE--cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence 111 1122 3333455555422 2 56667888888877665543322
Q ss_pred -------EEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCeeeeE--------Eecc-cccC---------------
Q 001396 527 -------TRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRT--------YQGL-QLQH--------------- 572 (1086)
Q Consensus 527 -------~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~--------~~~~-~~~~--------------- 572 (1086)
.-+.+..+|+ .++.+.. ++.+++.|..+|+.+.. .... ....
T Consensus 297 ~d~~~~p~l~d~~~~G~~~~~v~~~~K----~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 297 YDGVNEMILFDLKKDGKPRKLLAHADR----NGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEeCC----CceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 1122234666 4445543 77899999999988622 1000 0000
Q ss_pred ---C-----------ceEEEEEecCCCEEEEEEC---------------------------------CCcEEEEEcCCCe
Q 001396 573 ---N-----------SVSVVHFDTAKDQILAAGD---------------------------------DHVIKIWDMNKVQ 605 (1086)
Q Consensus 573 ---~-----------~v~~~~~~~~~~~l~~~s~---------------------------------dg~i~iwd~~~~~ 605 (1086)
. .-..++++|+...++.... -|.|.-+|+.+|+
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 0 0012556666655554322 2457888888988
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
..-..+.... ..... +.-.+.+++.++.+|.++.+|.++++.+...+.
T Consensus 453 ~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 453 IVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 8877654322 11222 222456777888899999999999998877653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.012 Score=65.46 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=144.2
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCceeE
Q 001396 799 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI 873 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~ 873 (1086)
-..+++++++..+.... ++.|.+.|..+.+......... ....+++++ +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45788899888666554 5889999988777776654332 667899999 6655555444 689999999999888
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE 950 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d 950 (1086)
.....-..+ ..++++|+|+.+..+ ..++.|.+.|........ ...............++++|+|.++.+. .+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775543344 889999999965554 478899999977644221 1100011111245679999999987763 22
Q ss_pred --CeEEEEEcCCccceecccc-CCccCEEEEEEeCCCCEEEEEECC-CcEEEEEcCCCceeeeec
Q 001396 951 --THLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 951 --~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~s~~~D-g~v~vWd~~~~~~~~~~~ 1011 (1086)
+.+...|..++........ +.. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 5889999888877664222 212 55678999999998887444 889999999988876665
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0044 Score=69.21 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=87.8
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccccccee-eeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR-KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
+.--+++..+++++.|+..|.+++|+...+.....-.+-...+. .+.+ +++..+++.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v----------------------s~~e~lvAa 93 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV----------------------SSVEYLVAA 93 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe----------------------cchhHhhhh
Confidence 44556777899999999999999999887755433332222222 2233 466778888
Q ss_pred ccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccC
Q 001396 698 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 698 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
|+..|.|-++.+....+.....+.-.+..|...|+++.|++++..+.+|...|.|..-.++.
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 88888888888776555554444444455889999999999999999999999998877654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.012 Score=65.97 Aligned_cols=225 Identities=12% Similarity=0.107 Sum_probs=111.0
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.+....-....+.++|+|++ +++ ..||.-.|+.....+... .+.-...+|++.
T Consensus 26 k~lg~~~~~p~~ls~npngr~-v~V-~g~geY~iyt~~~~r~k~------------------------~G~g~~~vw~~~ 79 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRF-VLV-CGDGEYEIYTALAWRNKA------------------------FGSGLSFVWSSR 79 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSE-EEE-EETTEEEEEETTTTEEEE------------------------EEE-SEEEE-TS
T ss_pred ccCCCCCcCCeeEEECCCCCE-EEE-EcCCEEEEEEccCCcccc------------------------cCceeEEEEecC
Confidence 334444446899999999996 444 445888888743332221 134456889985
Q ss_pred CCEEEEEeCCCEEEEE-EecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 402 GSLLGVAYSKHIVQLY-AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 402 g~~las~~~d~~i~iw-d~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++ +|+-...++|.|+ +.+. +..+.. .+. ..+..+-. |. +|...+ ++.|.+||+++++.++++...
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~-~~~k~i-~~~---~~~~~If~---G~--LL~~~~-~~~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKN-EVVKSI-KLP---FSVEKIFG---GN--LLGVKS-SDFICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE--TT------S---S-EEEEE----SS--SEEEEE-TTEEEEE-TTT--EEEEESS---
T ss_pred cc-EEEEECCCeEEEEEcCcc-ccceEE-cCC---cccceEEc---Cc--EEEEEC-CCCEEEEEhhHcceeeEEecC--
Confidence 55 6666668889996 4432 221211 111 12333322 66 455454 448999999999999998743
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCC----------c-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL----------G-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~----------~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
+|..+.|+ +++.+++..+.+ .+.+++.+.. + ...........|.+.+|..| .++..+. .
T Consensus 146 ~vk~V~Ws--~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~----~- 215 (443)
T PF04053_consen 146 AVKYVIWS--DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS----N- 215 (443)
T ss_dssp E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T----T-
T ss_pred CCcEEEEE--CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC----C-
Confidence 38888885 466788887755 5666654433 0 11222222557788888776 3333331 2
Q ss_pred eEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
.+.. +-.|+. ..+.... .++.-+.+.+..+.++....|+.+..+.+.
T Consensus 216 ~lkY--l~~Ge~-~~i~~ld---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 216 HLKY--LVNGET-GIIAHLD---KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE--EETTEE-EEEEE-S---S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEE--EEcCCc-ceEEEcC---CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 3443 222322 2222222 466667777766777777777777777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0031 Score=73.39 Aligned_cols=186 Identities=10% Similarity=0.077 Sum_probs=106.1
Q ss_pred CCeeEEEeecCCCEEEEEe-------CC--eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001396 797 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 859 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-------- 859 (1086)
..+...++||||+.+|... +. .|.+++.. +.. ..+.. ....+.-.|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999988775 32 35555642 222 33322 22478899999 77777666432
Q ss_pred ----CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE---EECCCCceeeeeeeeccCCCccCCCC
Q 001396 860 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 860 ----g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1086)
+.+.+.++..++... ...+.|..+.|||||+.++... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2346799999999999988776 477777 444444422211112211111 23
Q ss_pred ceEEEEecCCCEEEEEeCCeEEEEEcCC-ccceeccccC--CccCEEEEEEeCCCCEEEEEECCCcE
Q 001396 933 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTL 996 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v 996 (1086)
+.++.|..++.+++...++...+|.+.- |..... ..+ ...++..++-+++ .|+....+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 5789999999976554444444454431 322221 122 2567777777763 34445556633
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.15 Score=56.86 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=162.7
Q ss_pred cEEEEEECCCCCEEEEEeCCC-EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 392 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
....++..|++..+....... .+.+-+... ..... ....-...-..++.++++.+ .++....++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556788888886655543222 344444431 11111 11111133457888889886 45566667899999988877
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.......-. ....+++. ++++.+..+.. ++++.+.|-.+............+ ..++++|+|..++.... .
T Consensus 108 ~~~~~~vG~-~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776664332 44556664 45555555544 688888888887777764443334 88999999998887762 3
Q ss_pred ceeEEEEeCCCCeeeeEEecc--cccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 548 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
++.|.+.|..+....+ -... .........+.++|+++.++..... +.+...|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977665553 1100 1112345678899999987775433 68999999998877763222222 35679
Q ss_pred EEecCCCEEEEEECC-CcEEEEECCCCCeeeecc
Q 001396 623 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG 655 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~ 655 (1086)
.++|+|+.+.+.... +.+.+-|..+........
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 999999999888554 888888888776555443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.057 Score=60.60 Aligned_cols=230 Identities=12% Similarity=0.073 Sum_probs=111.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe-C
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A 466 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd-~ 466 (1086)
+.|.++.|+.+. .|++...||.++++|+...... .......-....+....+..+|- .++++ ++.+.+-+ .
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 799999999865 4556669999999998743300 00001111222233334444553 34433 34444333 2
Q ss_pred CCCceeEEe---ecCCc------ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE
Q 001396 467 VTGSRTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 467 ~~~~~~~~~---~~h~~------~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
......+.+ .+... ....+ .....+....+....++.+.+-+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211111111 11000 00000 01122333444445555555333222111 113468999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
++.... ++.+.+....-.+....+.... ......+.|.-+...++.- ...+.+.....
T Consensus 231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~-------------- 288 (410)
T PF04841_consen 231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG-------------- 288 (410)
T ss_pred EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------
Confidence 998875 5567777765555555555432 2455666666553222221 22333332111
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
..+.|.-++..++..-.|| ++|........++...
T Consensus 289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 2244444455444444455 7777655554444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.067 Score=57.07 Aligned_cols=231 Identities=11% Similarity=0.121 Sum_probs=131.7
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe----
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---- 475 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~---- 475 (1086)
..++.|+.|+.+| +.++++........ . .+...|..+...++-+ .++.-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999999 99999933222221 1 2333499999999888 444444 599999998754433311
Q ss_pred ----------ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-----ceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 476 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 476 ----------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
......+...+......+...+......+|.+|.+... .....+... ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 11223344444112334445555566669999887663 222333333 577888888 566666
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccc---------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEE--E
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 609 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~ 609 (1086)
+. .....+.|+.++.....+..... ...++..+... ++.+|++- +..-.+.|. .|+... .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65 23488899987766554432210 01233333333 44566553 222233333 444333 2
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
+.-.. ....+++. ..+++..+. +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 22111 24556664 457776665 5599999999988877763
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.024 Score=56.36 Aligned_cols=232 Identities=15% Similarity=0.093 Sum_probs=138.3
Q ss_pred eEEEeecCCC-EEEEEe-CCe-EEEEEccCceEEEEEcCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCC
Q 001396 800 PCFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARS 869 (1086)
Q Consensus 800 ~~l~~s~dg~-~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~ 869 (1086)
..++++|--. -++.+. -|+ ..++|..+.+.+.++....+. --.=.||| ||++|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 3577888644 344444 355 778999888777665433322 23347999 89988865433 6899999986
Q ss_pred c-eeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE--------------------EECCCCceeeeeeeeccCCCcc
Q 001396 870 S-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMT 928 (1086)
Q Consensus 870 ~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~ 928 (1086)
+ +.+.++..|.-....+.+.+||+.|+.+. |-|.. .|-.+++......+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~-- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ-- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--
Confidence 4 56778888888888999999999999764 22333 33223322221122111122
Q ss_pred CCCCceEEEEecCCCEEEEE------eCCeEEEEEcCCccceecccc------CCccCEEEEEEeCCCCEEEEEE-CCCc
Q 001396 929 LAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 995 (1086)
Q Consensus 929 ~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~s~~-~Dg~ 995 (1086)
-.+..++.-+||+.++.+ .|--..|=-...|+.+.-+.. .-...|-+++..-+..+++..+ .-+.
T Consensus 226 --lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 226 --LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred --cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 258899999999887763 111111111122222221110 1145677778776555555444 4556
Q ss_pred EEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 996 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 996 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
..+||..+|..+..-. ++.. ..++.. ..-|++.+.+|.++++.
T Consensus 304 ~vi~da~tG~vv~~a~----l~da--------aGva~~---~~gf~vssg~G~~~~~s 346 (366)
T COG3490 304 AVIWDAATGAVVSEAA----LPDA--------AGVAAA---KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEEcCCCcEEeccc----cccc--------ccceec---cCceEEecCCceEEecc
Confidence 8899999999884433 1111 112222 35678888899998874
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.075 Score=56.69 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=130.4
Q ss_pred CCceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEE
Q 001396 339 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 417 (1086)
Q Consensus 339 dg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 417 (1086)
.++. |+.|+.+| +.+++... ...... .+...|..+...|+-+.|++-+ |+.++++
T Consensus 6 ~~~~-L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGDR-LLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCCE-EEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence 3554 78888888 89999832 222211 1223499999999888877775 4899999
Q ss_pred EecCCCccccceE-----------eccccccEeEEE--ecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeecCC
Q 001396 418 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG 479 (1086)
Q Consensus 418 d~~~~~~~~~~~~-----------~~~h~~~v~~v~--~s~d~~~l~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~ 479 (1086)
++..-........ -......+...+ -...+.. .|+.+. .+.|.+|.+... +..+.+. -.
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cC
Confidence 9876543331100 011223344444 1123332 444444 558888876653 3455654 44
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC-----------ceEEEEEecCCCEEEEEeeCCCCc
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----------GCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----------~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
..+.+++|. +..++.|..++ ..+.|+.++.....+..... ....+.--+++.+|++..
T Consensus 139 ~~~~~i~~~----~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------ 207 (275)
T PF00780_consen 139 DPPSSIAFL----GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------ 207 (275)
T ss_pred CCcEEEEEe----CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence 778888885 23566666444 67788886655443322111 112222234456666532
Q ss_pred eeEEEEeCCCCeeee--EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 549 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
. +-++=-..|+..+ .+.- . ..+.++++. ..++++.+.+ .|.||++.++++++.+...
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 1 3333233454444 2221 1 345556654 3578777664 5999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.036 Score=58.75 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=137.3
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
.-.|.|+...|+.+.-..+.|.-|+..+|+... | . +...+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~--------------~-~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV------F--------------P-SPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE------E--------------E-CCCCcccceeecCCCeEEEE-ccc
Confidence 345778888778887788999999998775432 1 1 22334555444455555555 333
Q ss_pred EEEEEEecCCCccccceEec-c-ccccEeEEEecCCCCcEEEEEEeC-----------CCcEEEEeCCCCceeEEeecCC
Q 001396 413 IVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD-----------DKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~l~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
+.+++.+++.......... + -..+.+.+...|+|. +.++... -|.++..|. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 6777876655422211111 1 124567889999998 3333222 122444443 566666666666
Q ss_pred cceEEEeecccCCccEEEEE-EcCCeEEEEEcCC-----Cc--eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 480 APVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~-----~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
..-+.++|+| |++.++.+ +..+.|..|++.. .. .........+..-.++...+|.+-+++... .+.|
T Consensus 163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 6678899965 55555555 5568888888763 11 122333344566778888899887644321 2369
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEEC
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 592 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 592 (1086)
..|+.+ |+.+..+.... ..+.+++|. ++.+.|++.+.
T Consensus 238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEec
Confidence 999988 99999988875 567777775 45566655543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=5.5e-05 Score=82.40 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=131.6
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee--EEecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
.+.+++.....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.||+|-.....+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 445555544445567888899999998877654433 34455666899999988 667777776555567889999998
Q ss_pred CC--eeeeE--EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEec-CCCEE
Q 001396 558 EG--AIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL 631 (1086)
Q Consensus 558 ~~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l 631 (1086)
++ .+... |.+. ......+++|-.+.+.+++|.....+.++|++. ......+. +..+..+.++| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 77 22221 2221 124566889999999999999999999999873 22222221 22356788888 77787
Q ss_pred EEEECCCcEEEEECC-CC-Ceeeecccccc----ceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 632 AVIANENRIKILETP-ES-NSVDAAGVLSD----NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~~----~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
++-. ||.|.+||.. .- .++..+....+ .+..+++.|... |...+..-..++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 8999999942 21 23333332222 377788887532 33334444456788
Q ss_pred eeeee
Q 001396 706 VEKPL 710 (1086)
Q Consensus 706 vw~~~ 710 (1086)
++++.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88754
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=6.1e-05 Score=82.06 Aligned_cols=204 Identities=12% Similarity=0.174 Sum_probs=128.2
Q ss_pred CCCceEeeecCCCc-eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCCEE
Q 001396 328 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 405 (1086)
Q Consensus 328 ~~~V~~~~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 405 (1086)
...+.|+++.-+.+ -++++|..+|.|.+-.+....-- ...+..+|....+++||++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44788888766543 58999999999999877543211 0112557888999999998 66778
Q ss_pred EEEe----CCCEEEEEEecCCCc-cccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecC
Q 001396 406 GVAY----SKHIVQLYAYHGGSD-ARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH 478 (1086)
Q Consensus 406 as~~----~d~~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h 478 (1086)
|+|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|.....+.++|++... ....+ .
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 8773 456799999998721 111111222 344566899998877 78889888899999976321 11111 2
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEE-cCCCceeEEecC-----CCCceEEEEEecCCC-EEEEEeeCCCCceeE
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVDYDA-----PGLGCTRMAYSANGR-RLFSCGTSKEGESFL 551 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~-----~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i 551 (1086)
+..+..+.+.|- .+.++++-. ||.|.+|| ...-+....... ....+..++|.|-.. .++++..+ .++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cceE
Confidence 223444455442 233665555 99999999 433332221111 122588899999544 34444432 5678
Q ss_pred EEEeCC
Q 001396 552 VEWNES 557 (1086)
Q Consensus 552 ~iwd~~ 557 (1086)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999875
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.075 Score=56.43 Aligned_cols=215 Identities=11% Similarity=0.035 Sum_probs=127.6
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
-.|.++... ++.+--..+.|.-||..+|+. ..+. +.+.+.++... + .+..|+++... +.+++.+.+..+..+.
T Consensus 30 P~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~-d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGA-LLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALI-D-AGGRLIACEHG--VRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCE-EEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceee-c-CCCeEEEEccc--cEEEeccCCceeEEec
Confidence 356677765 455555678899999876653 2332 22223333321 2 22344444332 4445555444422221
Q ss_pred -C----CCCceEEEEEecCCCEEEEEee-----CC--CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEE
Q 001396 521 -A----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 588 (1086)
Q Consensus 521 -~----~~~~i~~~~~s~d~~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 588 (1086)
. .....+.+...|+|.+-+.... .. ...+.|+.+|. .+..++.+..+- ..-+.++||||++.++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly 178 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEE
Confidence 1 1234567888899988776544 11 22345666665 466666666544 5678999999998888
Q ss_pred EEEC-CCcEEEEEcCC--Cee---EEEEcCCCCCCCCceEEEecCCCEEEEEECCC-cEEEEECCCCCeeeeccccccce
Q 001396 589 AAGD-DHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNL 661 (1086)
Q Consensus 589 ~~s~-dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~v 661 (1086)
.+.. .+.|..|++.. +.. .............-.++...+|.+.+++..+| .|..|+.. ++.+..+..+...+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 7654 47788887752 211 11111111122346788888998886555554 89999988 88888888776777
Q ss_pred eeeEEc
Q 001396 662 RKLSVN 667 (1086)
Q Consensus 662 ~~~~~~ 667 (1086)
.+++|.
T Consensus 258 t~~~Fg 263 (307)
T COG3386 258 TNPAFG 263 (307)
T ss_pred ccceEe
Confidence 777775
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.82 Score=55.23 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=121.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcc--------eEEEeeccc--------------CCccEEEEEEcCCeEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 508 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~vw 508 (1086)
.++.++.++.|.-.|.++|+.+.++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888888776432211 112222211 133478889999999999
Q ss_pred EcCCCceeEEecCCCC------------ceEEEEEec--CCCEEEEEeeCCC------CceeEEEEeCCCCeeeeEEecc
Q 001396 509 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 509 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
|.++++....+..... ....+.-.| .+..++.++...+ ..+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9999888866533211 000111112 2334555543222 2678999999999988776531
Q ss_pred ccc--------------CCce-EEEEEecCCCEEEEEE------------------CCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 569 QLQ--------------HNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 569 ~~~--------------~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
... ...+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 100 0011 2345555555554422 235577788889988877754211
Q ss_pred C-------CCCceEEEec-CCC---EEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 616 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 616 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+...+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 0 0111222333 553 789999999999999999988776543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.42 Score=57.67 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=124.4
Q ss_pred ccEEEEEECCCCCEEEEEeCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----Cc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 460 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~ 460 (1086)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 456678999999999987432 3699999998864322 1222 1 1459999999863 3333222 36
Q ss_pred EEEEeCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCC--CceeEEecCCCCceEEEEEec
Q 001396 461 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 461 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 533 (1086)
|+.+++.++ +....+........ +....+.++.+++..+. ++.+.+++... ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888898888 33344443333333 22222445565554433 35688888532 332222322322222222 2
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEc
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 611 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~ 611 (1086)
.+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 234444444323334556666665 2332 2333331 124677777773 34555566677655554432 22334333
Q ss_pred CCCCCCCCceEEEe--cCCC-EEEEEEC---CCcEEEEECCCC
Q 001396 612 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 648 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 648 (1086)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222333 3333 3333332 366777777665
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.14 Score=56.01 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=104.5
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE---EEEECCC----CCEEEEEeC---------C-CE
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---RVVWSPD----GSLLGVAYS---------K-HI 413 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---~l~~spd----g~~las~~~---------d-~~ 413 (1086)
..|+|.|..+.+.+....++ . ...|. .+.|..+ ..+|++|+. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-----------------~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-----------------P-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-----------------T-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC-----------------C-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 45888888888877654433 2 23333 4444443 578888743 2 88
Q ss_pred EEEEEecCC----CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEee-cCCcceEEEee
Q 001396 414 VQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCP 487 (1086)
Q Consensus 414 i~iwd~~~~----~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~ 487 (1086)
|.++++... ..++.... ....++|++++-- .+ .++.+. .+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 22332222 2457889988876 33 344333 5789999998887 332221 12235566654
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCce-eE--EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
. +.+++.|.....+.++.++.... .. ........++++.|-++++.++.+.. ++.+.++...
T Consensus 138 ~----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 F----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp E----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred c----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 2 34899999988888886655333 22 22334557889999877776666543 5567766554
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.024 Score=66.95 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=101.2
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCC-------CEEEEEeCCCcEEEEECCCCceeeeee
Q 001396 849 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 849 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg-------~~l~s~s~dg~i~iwd~~~~~~~~~~~ 919 (1086)
+..+|..- .....|+-.|+..|+.+..+..|... |.. +.|+. .--+.|-.+..+..||..-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 45555543 34578999999999999999987754 544 44432 223445567779999987532 112
Q ss_pred eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEE
Q 001396 920 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vW 999 (1086)
+.............+|++-+.+|...+.+.+|.|++||- .|..-.+.+++-..+|..|+.+.||++|++.+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 211111111223578888888888777789999999994 45556666777789999999999999988665 5678888
Q ss_pred EcC
Q 001396 1000 EAS 1002 (1086)
Q Consensus 1000 d~~ 1002 (1086)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.11 Score=57.12 Aligned_cols=83 Identities=12% Similarity=0.261 Sum_probs=58.1
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC-----------------CE-
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ- 586 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~- 586 (1086)
.+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. +..+.-+.....+ .+
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEE
Confidence 57789999998877764 337789999999999999998876 2222222111111 12
Q ss_pred EEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 587 ILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
++-+-.-|.|.||++++|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 233677899999999999888877643
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.7 Score=54.29 Aligned_cols=234 Identities=12% Similarity=0.032 Sum_probs=117.9
Q ss_pred EEEEEecc------CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC-C---
Q 001396 343 LLLVGTNV------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-H--- 412 (1086)
Q Consensus 343 lla~gs~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~--- 412 (1086)
|++.|+.+ ..+..+|..+++-..... +. +...-.++++. +|...++|+.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 55555554 357788887764332211 11 11223334443 45777888888 3
Q ss_pred --EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC-----cEEEEeCCCCcee--EEeecCCcceE
Q 001396 413 --IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----TIKVWDAVTGSRT--YSFEGHGAPVY 483 (1086)
Q Consensus 413 --~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~-----~i~iwd~~~~~~~--~~~~~h~~~v~ 483 (1086)
++..||..+++-.. ...+...........+ +|. +.|.||.|| ++..||..+.+-- ..+........
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 68889988876322 2222222222222222 556 788888886 4778887765432 11211111122
Q ss_pred EEeecccCCccEEEEEEcCC------eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC-CCceeEEEEeC
Q 001396 484 SLCPHAKENIHFIFSISVDG------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNE 556 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~ 556 (1086)
.+.+ +|.+.++||.++ .+..||..+..=...-.....+...-.-.-++...+.||.++ .....|..||.
T Consensus 423 v~~~----~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVL----GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEE----CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 2222 667778887665 456676665543332222222211123334666666666543 12344788998
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeE
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLL 607 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~ 607 (1086)
.+.+....- ........+..+. -++...++|+.|| +|..||..+.+-.
T Consensus 499 ~~~~W~~v~-~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 499 ETNQWTMVA-PMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CCCceeEcc-cCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 887665442 1110112222222 2345556677665 4667777665543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=1 Score=54.53 Aligned_cols=244 Identities=9% Similarity=0.014 Sum_probs=122.0
Q ss_pred CceEeeecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. . +.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence 5777899999996555444433 488999988864422 0 111 11469999999988
Q ss_pred EEEeCC------CEEEEEEecCCCccccceEeccccccEe-EEEecCCCCcEEEEEEe-CCCcEEEEeCC--CCceeEEe
Q 001396 406 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF 475 (1086)
Q Consensus 406 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~s~d~~~l~l~s~~-~d~~i~iwd~~--~~~~~~~~ 475 (1086)
+....+ ..|+.+++.++..-... .+........ .+..+.|++.+++-+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 36888888887321111 2333223333 33445588853322222 34578888843 34432222
Q ss_pred ecCCcceEEEeecccCCccEEEEEEc-CC--eEEEEEcCC-CceeEEecC-CCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~-~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
....+....+. + . ++.+++.... .. .|...++.. .+-...+.. ....+..+.+. ++.|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 22222222222 1 1 2223332222 12 343344442 222223333 23367777776 445554443 234666
Q ss_pred EEEEeCCCCeeeeEEe-cccccCCceEEEEEe--cCCC-EEEEEE---CCCcEEEEEcCCCe
Q 001396 551 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 605 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 605 (1086)
+++++..++. +..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33332 111 223333344 3444 333332 45678888887765
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=69.84 Aligned_cols=94 Identities=21% Similarity=0.420 Sum_probs=72.4
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE-EEEECCCCCEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV 407 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~las 407 (1086)
..|..+.|+|.-. |+|.+..+|.|.+..++ -+.+ |+ +.-|+..++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEE
Confidence 3788999999987 79999999999998887 4433 33 333556666 9999999999999
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecC
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 445 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~ 445 (1086)
|-.||+|++-|+++|..+... ...-...|.++-|++
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 999999999999998765431 123345677777763
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.24 Score=54.57 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=57.2
Q ss_pred CCCCeeEEEeecCCCEEEEEeC-CeEEEEEccCceEEEEEcCCCCCeEE-EEEcCCC----------------CC-EEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI 855 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las 855 (1086)
....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 4456889999999998888764 99999999999888887765543211 1111101 11 3344
Q ss_pred EeCCCeEEEEEcCCceeEEEec
Q 001396 856 GMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 856 g~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999887766554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0021 Score=43.79 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.7
Q ss_pred ceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 870 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 870 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.69 Score=48.86 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=83.3
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 834 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
......+..+..++ |+++++++.......-||--...-...-..-..+|.+|.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34457788899998 89999988655555677754322222222345789999999998876654 88888877722211
Q ss_pred eeeeee--eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecccc--CCccCEEEEEEeCCCCEEEE
Q 001396 914 IQTCRS--LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 914 ~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s 989 (1086)
..... ....... -.+..++|.+++...|++..|.+. .....|+.-..-.. .-......+.|..+.+-++
T Consensus 219 -~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~- 291 (302)
T PF14870_consen 219 -ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV- 291 (302)
T ss_dssp -EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-
T ss_pred -cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-
Confidence 11111 1111111 247899999999999988888554 45555654443222 2256788999987765555
Q ss_pred EECCCcEEEE
Q 001396 990 SFVDGTLSIH 999 (1086)
Q Consensus 990 ~~~Dg~v~vW 999 (1086)
.+.+|.+.=|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 4578887654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.31 Score=50.70 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=111.4
Q ss_pred CeEEEEEcCCCCCEEEEEe-CC--CeEEEEEcCCceeEEE-eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE-CCCCc
Q 001396 839 TATSLAFNPHDNNVIAIGM-DD--STILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG 913 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~-~d--g~v~iwd~~~~~~~~~-l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd-~~~~~ 913 (1086)
.+.+.++++ +++.+|... .+ ..++++... ..... +.+. .++...|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666554 23 355555433 33222 2333 688889999988887777677777774 22322
Q ss_pred eeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe----CCeEEEEEcC---Cc--cce---eccccCCccCEEEEEEe
Q 001396 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS 981 (1086)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~l~fs 981 (1086)
... ..+...... +.|+.+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111 112221111 1599999999999999832 5677776543 23 111 01111225688999999
Q ss_pred CCCCEEEEEECCCc-EEE-EEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 982 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 982 ~dg~~l~s~~~Dg~-v~v-Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
+++.+++.+...+. +.. .....+... .+ +.. .......++.-++ .. +.+.+++.+.- ...+.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~ 238 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA 238 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCccc-cc------CCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence 99988776655443 333 333322211 11 111 2223334455444 33 44555555543 55666
Q ss_pred CCCCCC
Q 001396 1060 TWAVLP 1065 (1086)
Q Consensus 1060 ~~~~~~ 1065 (1086)
.|...+
T Consensus 239 ~W~~v~ 244 (253)
T PF10647_consen 239 SWREVP 244 (253)
T ss_pred cceEcc
Confidence 776554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.14 Score=53.40 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=91.9
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cCCceeE
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 873 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~ 873 (1086)
..+...++|+|++.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888876 5544444444333333332 334788889999 687877777677777774 3333322
Q ss_pred -EEec--cccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCceeee----eeeeccCCCccCCCCceEEEEecCCC
Q 001396 874 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQTC----RSLQTPDGVMTLAPSETHIQFHKDQT 943 (1086)
Q Consensus 874 -~~l~--~h~~~v~~l~~spdg~~l~s~s---~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~dg~ 943 (1086)
..+. .-.+.|+.+.+||||..+|... .++.|.|=-+........ ..+...... ...+..++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 1121 1122899999999999988765 357777776653322211 111211111 13689999999999
Q ss_pred EEEEE
Q 001396 944 RFLLV 948 (1086)
Q Consensus 944 ~l~~~ 948 (1086)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0051 Score=67.80 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 915 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~-~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~ 915 (1086)
...+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34677899999 88999999999999999998 788889887887888 9999999999999999999999999987643
Q ss_pred eeeeeeccCCCccCCCCceEEEEe
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
.... .. ....|..+-|+
T Consensus 98 ~~~~----~s---~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFL----FS---VETDISKGIWD 114 (665)
T ss_pred eccc----cc---cccchheeecc
Confidence 3211 11 11256777776
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.029 Score=60.75 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=97.7
Q ss_pred CCCEEE-EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEE-----EEEeCCCcEEEEeCCC-Cc-ee
Q 001396 401 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVT-GS-RT 472 (1086)
Q Consensus 401 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l-----~s~~~d~~i~iwd~~~-~~-~~ 472 (1086)
+..+|. ++.....++=.|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|..|.-||.+- +. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34444568888999998766 4555555 888888888652111 2355688999999873 22 22
Q ss_pred EEeecCC----cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
...++|+ ....|.+- ..+| ++++||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2333332 23444443 4444 899999999999999754455557778888999999999999998766 5
Q ss_pred eeEEEEeCC
Q 001396 549 SFLVEWNES 557 (1086)
Q Consensus 549 ~~i~iwd~~ 557 (1086)
.++.+.++.
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 567776643
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.11 Score=56.76 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=107.0
Q ss_pred cEEEEeCCCCceeEEeec-CCcceEEEeecccC-----CccEEEEEEc----------CCeEEEEEcCCC-----ceeE-
Q 001396 460 TIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKE-----NIHFIFSISV----------DGKIKAWLYDSL-----GARV- 517 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~-----~~~~l~s~s~----------dg~i~vwd~~~~-----~~~~- 517 (1086)
.|++.|..+.+.+.++.- ....+.+++...-. ...+++.|+. .|.|.++++... +...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888888877765533 23345555433222 2467777754 289999999884 2111
Q ss_pred EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEEEEecCCCEEEEEECCCcE
Q 001396 518 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 596 (1086)
Q Consensus 518 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 596 (1086)
......++|++++-- +++ ++++. ...|++|++...+ ....-..+. ...+.++.. .++++++|.....+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~--~~~i~sl~~--~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDS--PFYITSLSV--FKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-B--SSSEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecc--eEEEEEEec--cccEEEEEEcccCE
Confidence 112335678888765 444 44444 3468899988777 443333322 134445444 46699999988888
Q ss_pred EEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 597 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 597 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.++..+. +..+..+........+.++.|-++++.++++..+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8875543 3334344333223457788888666799999999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0033 Score=42.79 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=33.0
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEe
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD 357 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd 357 (1086)
.+...+..|...|+++.|+|++. ++++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34566778999999999999997 689999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.037 Score=65.44 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=99.3
Q ss_pred CCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc-eEEEeeccc---CCccEEEEEEcCCeEEEEEcCCCceeEEe-c-
Q 001396 447 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D- 520 (1086)
Q Consensus 447 ~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~- 520 (1086)
.+.++|........|+-.|+++|+.+..+..|... |..++-... -+..-.+.|-.+..+..||.+-....... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34445555566788999999999999999888755 666653211 01235677888889999999875532211 1
Q ss_pred ---CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.......|++-+.+|. ||+|+. +|.|++||--..+....+.+.. .+|..+..+.||++|++.+. ..+.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence 1233577777777774 556654 6669999954444444455555 89999999999999988775 4566
Q ss_pred EEEc
Q 001396 598 IWDM 601 (1086)
Q Consensus 598 iwd~ 601 (1086)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 6654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.5 Score=47.87 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=39.7
Q ss_pred CceEEEEEec-------CCCEEEEEECCCcEEEEEcCCCeeEE-EEcCCCCC-CCCceEEEecCCCEEEEEECCCcEE
Q 001396 573 NSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLT-TIDAGGGL-PENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 573 ~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
..+..+.|.. .+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3555666653 34455555556778888877553332 22211222 2578999999999888887788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.99 Score=49.24 Aligned_cols=240 Identities=12% Similarity=0.131 Sum_probs=120.8
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEEccCceE---EEEEc----CCCCCeEEEEEcCC---CCCEEEEEeCC--------C
Q 001396 799 VPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTIM----PPSPTATSLAFNPH---DNNVIAIGMDD--------S 860 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---d~~~lasg~~d--------g 860 (1086)
...|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 4689999999998877789999999 44443 33331 23356799999992 24444433321 2
Q ss_pred eEEEEEcCCc-------e-eEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCc-----------EEEEECCC-Cceeee
Q 001396 861 TILIYNARSS-------E-VISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQTC 917 (1086)
Q Consensus 861 ~v~iwd~~~~-------~-~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~-----------i~iwd~~~-~~~~~~ 917 (1086)
.|.-|....+ + .+..+.. ....-..|+|.|||.+.++.+..+. =+|+.+.. +.....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~d 162 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPAD 162 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCC
Confidence 4444444333 1 1122222 1223466999999988888776543 01122111 000000
Q ss_pred eee--------e-ccCCCccCCCCceEEEEecC-CCEEEE--EeCCeEEEEEcCCccc----------------e-----
Q 001396 918 RSL--------Q-TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L----- 964 (1086)
Q Consensus 918 ~~~--------~-~~~~~~~~~~~v~~~~~s~d-g~~l~~--~~d~~i~vwd~~~~~~----------------~----- 964 (1086)
... . ...|+ .....++|.|. |.+.++ +.++.=.|..+..|.- .
T Consensus 163 nP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp STTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000 0 00001 12467999999 777776 4443322222222210 0
Q ss_pred ------eccccCCccCEEEEEEeC-------CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEE
Q 001396 965 ------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1031 (1086)
Q Consensus 965 ------~~~~~~h~~~v~~l~fs~-------dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1086)
..+.-.+...+..+.|-. .|.++++.-..+.|....++.+..+...... . .....++..++
T Consensus 239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~----~~~~~r~~~v~ 312 (331)
T PF07995_consen 239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L----GGFGGRPRDVA 312 (331)
T ss_dssp -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C----TTSSS-EEEEE
T ss_pred CCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c----ccCCCCceEEE
Confidence 000011345667777753 4556766655667888787755333222211 1 12223577899
Q ss_pred ECCCCCCEEEEEeCCCcEE
Q 001396 1032 AHPLKPTQFAVGLTNGEVY 1050 (1086)
Q Consensus 1032 ~~p~~~~~l~~~~~dg~v~ 1050 (1086)
+.| ||.++++.+.+|.|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 788888888899875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=61.20 Aligned_cols=203 Identities=7% Similarity=-0.029 Sum_probs=101.5
Q ss_pred CCCcEEEEEEeCC------CcEEEEeCCCCcee--EEeecCCcceEEEeecccCCccEEEEEEcCC-----eEEEEEcCC
Q 001396 446 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 512 (1086)
Q Consensus 446 d~~~l~l~s~~~d------~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~ 512 (1086)
++. +++.||.+ ..+..||..+..-. ..+.........+.+ ++...+.||.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 34778887776432 111111111112222 556777777654 477888765
Q ss_pred CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-------------------ceeEEEEeCCCCeeeeEEecccccCC
Q 001396 513 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 573 (1086)
Q Consensus 513 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~ 573 (1086)
.+=...-..+.......+..-+|+..+.||.++.. ...+..||+.+.+....-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111223467777777643210 2458889988776543222111 1
Q ss_pred ceEEEEEecCCCEEEEEECC------CcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--cEEEEE
Q 001396 574 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 644 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 644 (1086)
........-+++..+.|+.+ ..+..||..+ .+-...............++ -+|++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11111122245555556543 2467899887 55443332222221222222 2688888998888 778888
Q ss_pred CCCCCeeeecccccc
Q 001396 645 TPESNSVDAAGVLSD 659 (1086)
Q Consensus 645 ~~~~~~~~~~~~~~~ 659 (1086)
..+.+.......|.+
T Consensus 532 ~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 532 VYTYEWNHICHQHSN 546 (557)
T ss_pred cccccccchhhhcCC
Confidence 887766555444443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.8 Score=48.12 Aligned_cols=275 Identities=13% Similarity=0.104 Sum_probs=149.4
Q ss_pred CCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec-----CCCEEEE
Q 001396 739 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS 813 (1086)
Q Consensus 739 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~l~~ 813 (1086)
+...|++|+..|.++||+-..+..... ..+.... -..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence 345688899999999997533322111 1122221 234555555332 4456777
Q ss_pred EeCCeEEEEEccC--ce-------EEEEEcCCC--CCeEEEEEcCCC----CCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 814 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPHD----NNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 814 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~d----~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
-.-.++.||.+.. |. .+.....|. .....++.-|.+ ..+|.+-+-||.+.+|+-+.......+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6778888887731 11 122222232 223333333322 46888999999999999876555555554
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee---------------------eeeeeeccCCCccCCCCceEEE
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ 937 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~~~ 937 (1086)
.--...+++++.-..+++++.+..|.-|....-... ..+.+...+... .|..+.
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~ 248 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR 248 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence 222344788888889999999988888875321000 001111111111 234444
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEE-EEeC----CCC---EEEEEECCCcEEEEEcCCCceeee
Q 001396 938 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1009 (1086)
Q Consensus 938 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg~---~l~s~~~Dg~v~vWd~~~~~~~~~ 1009 (1086)
++.....+++-.+.++.+.+.. |.......- .....++ .|.. ++. .++.++.++++.||.=.+....+.
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~ 325 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ 325 (418)
T ss_pred cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence 4445555666566677777653 443322111 1122222 1221 222 477788999999998665555544
Q ss_pred eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1010 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
+. ..++. +.++.-+.-...|++-+++|.|.+-=+
T Consensus 326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEe
Confidence 42 11222 223322223578999999999988544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.16 Score=59.78 Aligned_cols=227 Identities=11% Similarity=0.005 Sum_probs=117.2
Q ss_pred eEEEEEccCceEE--EEEcCCCCCeEEEEEcCCCCCEEEEEeCC------CeEEEEEcCCcee--EEEeccccCCeEEEE
Q 001396 818 VISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLV 887 (1086)
Q Consensus 818 ~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~v~~l~ 887 (1086)
.+..||..+.+-. ..+..... -.+++.. ++.++++|+.+ ..+..||..+.+- +..+....... .+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 4567777655422 22221111 1223332 67788888754 3577888877642 22222111112 22
Q ss_pred EeCCCCEEEEEeCCC-----cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe-C-----------
Q 001396 888 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E----------- 950 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----------- 950 (1086)
..-+|+..+.||.++ .+..||..+.+-.. +....... ....+..-+|+..+.|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r-----~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL-----SSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc-----ccccEEEECCEEEEEeCCCccccccccccc
Confidence 233778888888764 47889988754222 22211111 11112234666666642 2
Q ss_pred ------------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC------cEEEEEcCC-Cceeeeec
Q 001396 951 ------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRIL 1011 (1086)
Q Consensus 951 ------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg------~v~vWd~~~-~~~~~~~~ 1011 (1086)
..+..||..+.+.... ..-...+...-+..-+|+..+.||.++ .|..||..+ .+....-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~- 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT- 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-
Confidence 2477888877654321 111111222222344677777777642 467788887 4443111
Q ss_pred cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC--cEEEEccCCCCCCCCCCCcccccC
Q 001396 1012 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG--EVYVIEPNEPGDTWAVLPPDEIVG 1071 (1086)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg--~v~vw~~~~~~~~~~~~~p~~~~~ 1071 (1086)
.++.. .....++.. ++...++||.+| ++..+|+.. .+|...+|.-.+.
T Consensus 498 ---~m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~--~~W~~~~~~~~~~ 547 (557)
T PHA02713 498 ---TTESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYT--YEWNHICHQHSNS 547 (557)
T ss_pred ---ccCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccc--ccccchhhhcCCc
Confidence 11111 111223333 578999999999 677777744 5698877765443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.25 Score=57.97 Aligned_cols=236 Identities=11% Similarity=0.012 Sum_probs=124.7
Q ss_pred CCCEEEEEeCC------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC------CcEEEEeCCC
Q 001396 401 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 468 (1086)
Q Consensus 401 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~~ 468 (1086)
.+.+++.|+.+ ..+..+|..+++-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45556666655 358888888764222 11222 222233445543 34 78888888 3577888877
Q ss_pred CceeE--EeecCCcceEEEeecccCCccEEEEEEcCCe-----EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 469 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 469 ~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
++-.. .+...........+ +|.+.++|+.||. +-.||..+.+=...-.........-...-+|+..++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 76332 12111111111111 6678889998875 5666665543322222222222222334567777777
Q ss_pred eeCCCCc--eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc-----EEEEEcCCCeeEEEEcCCC
Q 001396 542 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 542 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~ 614 (1086)
|.++..+ ..+..||..++.....-.-.. ...... ++ .-++...+.||.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7555432 678999998876543332222 001111 22 234556666776653 7889988877665532222
Q ss_pred CCCCCceEEEecCCCEEEEEECCC-----cEEEEECCCCCe
Q 001396 615 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 650 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 650 (1086)
....+.. ..-++...++|+.|| +|..||..+++.
T Consensus 512 ~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 512 PRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ccccccE--EEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 2111111 222467778887765 466666665533
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.2 Score=45.40 Aligned_cols=184 Identities=10% Similarity=0.124 Sum_probs=112.8
Q ss_pred eeEEEeecCCCEEEEEe-C--CeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001396 799 VPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 874 (1086)
...+.|..+|.++-+.+ - ..|+.+|+.+++......-.. ----.++.. ++++..-.-.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45788888888877776 2 469999999998876654332 223455555 45666677788999999999999988
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeE
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 953 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i 953 (1086)
++. ..+.=+.++ .|++.|+.......|.++|..+-+......+... +... ..+..+.+- +|...|=. ....|
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv--~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPV--SNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE-----EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEEC--CCcEeEEEE-cCEEEEEeCCCCeE
Confidence 886 345567777 4677777666667799999877554332222221 1111 245556665 55544433 56678
Q ss_pred EEEEcCCccceeccc-----c------CC---ccCEEEEEEeCCCCEEEEEE
Q 001396 954 AIYEAEELTCLKQWF-----P------IS---SVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~-----~------~h---~~~v~~l~fs~dg~~l~s~~ 991 (1086)
...|..+|+....+- . .+ ..-...+++.|.+..|...|
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888888888765421 0 01 34578899988776555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.13 Score=44.12 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=64.3
Q ss_pred ceEeee---cCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 331 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 331 V~~~~~---spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
|+++++ ..||+.-|++||.|..|+||+-. +.+.+. .-.+.|++++-... .+++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--------------------~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--------------------TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--------------------ecccceEEEEEcCC-CEEEE
Confidence 445554 45666679999999999999843 444321 13467888887766 67889
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEe---cCCCCcEEEEEEeCCCcEE
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF---SAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~---s~d~~~l~l~s~~~d~~i~ 462 (1086)
+..+|+|-+|+-... .. ..+. +..+.++++ ..||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lW----RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LW----RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-ee----eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999875331 11 1222 222555544 334443 577787777664
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.9 Score=47.02 Aligned_cols=157 Identities=10% Similarity=-0.011 Sum_probs=88.2
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcC
Q 001396 880 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 959 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~ 959 (1086)
.+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+..... ..+..+++.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 456889999999876655 45564432 211111 11222222111 35889999999999888877766532344
Q ss_pred CccceeccccC---CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 960 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 960 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
.|........+ ....+..+.|.+++..++ ++.+|.|. ...+.|+--.........+ .....+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~-------~~~~~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVP-------SNFYKIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCC-------cceEEEEEeC--
Confidence 55443321111 134578899999887665 55677665 4555554332221101111 1123455553
Q ss_pred CCEEEEEeCCCcEEEEccC
Q 001396 1037 PTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1037 ~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++.....+..|.|..|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3556778889999888653
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.07 Score=57.91 Aligned_cols=146 Identities=9% Similarity=0.101 Sum_probs=101.4
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCE--E-----EEEeCCCcEEEEECCCCceeeeeeeeccC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~--l-----~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
++.++.....++-.|+..|+.+..+.-|.. |.-+.+.|+.+. | +.|=.|..|.-||..-.........+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667899999999999999997777 888888887632 1 22445677888987643221111111111
Q ss_pred CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 925 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 925 ~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
-.. .....|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus 427 y~~--k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YST--KNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccc--ccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 111 12355666666776666689999999998 6777777788889999999999999998855 46677777654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.054 Score=63.87 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
-+..+|.|+..|.+-..|+.+. ++....-..-.++|++++|+.||+ .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888988898888888764 222111123457999999999999 888999999999999999999999998988
Q ss_pred ceEEEeecc-cCCccEEEEEEcCCeEEEEEc
Q 001396 481 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 510 (1086)
Q Consensus 481 ~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~ 510 (1086)
+.+++-++. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887776442 334446777777776 5544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.5 Score=44.82 Aligned_cols=176 Identities=13% Similarity=0.177 Sum_probs=109.6
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001396 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 834 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 912 (1086)
.+....+.++.|+| +.+.|++......-.|+=-.+|+.+.++.- .-...-.+.+.-+|++.++--.++.+.++.++.+
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44455699999999 677777777677666776667888877652 1223456888889999888888999999988765
Q ss_pred cee-eeeeeeccCCCccC-CCCceEEEEecCCCEEEEEeC-CeEEEEEcCCccc-e-eccccCC-------ccCEEEEEE
Q 001396 913 GIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHE-THLAIYEAEELTC-L-KQWFPIS-------SVPISQATF 980 (1086)
Q Consensus 913 ~~~-~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~d-~~i~vwd~~~~~~-~-~~~~~~h-------~~~v~~l~f 980 (1086)
... .....+..-+.... ......+||+|..+.|.+..+ +-+.||.+..+.. + ......+ -..|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 321 11111211111111 346889999999988888644 4466666553221 1 1111111 345677788
Q ss_pred eC-CCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 981 SC-DCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 981 s~-dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
.+ .+.+|+-+.+++.+.-.|.... .+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE-VIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC-eeeeEE
Confidence 76 4556666667777777776644 344443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.35 E-value=2.3 Score=47.17 Aligned_cols=281 Identities=11% Similarity=0.124 Sum_probs=143.8
Q ss_pred CCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-----CCCEEEEEeCCC
Q 001396 338 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGVAYSKH 412 (1086)
Q Consensus 338 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las~~~d~ 412 (1086)
++++-.|++||..|.++||+...+....... .+-..-+.+|-.++.-+ +...||+ -.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~l---------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDL---------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccE---------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 4444469999999999999996544221100 00112335676666532 2334555 4566
Q ss_pred EEEEEEecCCCcc------ccceEeccccc--cEeEEEecCC----CCcEEEEEEeCCCcEEEEeCCCCceeEEeec--C
Q 001396 413 IVQLYAYHGGSDA------RQQLEIDAHVG--NVNDLAFSAP----CKQISVITCGDDKTIKVWDAVTGSRTYSFEG--H 478 (1086)
Q Consensus 413 ~i~iwd~~~~~~~------~~~~~~~~h~~--~v~~v~~s~d----~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~--h 478 (1086)
.+.||.+...... ..+..+..|.- ....++.-|- |+. ++..-+.||.+.+++-+.-...+.+.+ .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7888888432111 11112223322 2223333222 233 788889999999999554443344433 3
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-----------------------EEecCCCC--ceEEEEEec
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------------------VDYDAPGL--GCTRMAYSA 533 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~--~i~~~~~s~ 533 (1086)
.+|+ ++.+.. ..|++++.+..+..|........ ..+..... .+..+.++.
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3443 444443 37889988888888865321110 11111111 223333333
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec----CC---CEEEEEECCCcEEEEEcCCCee
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
....+++-+ +..+.+.+. +|......+- . ..+...+.|.. ++ ..++.++.++++.||.= .++
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L 320 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTL 320 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeE
Confidence 333444443 456777775 4544333322 2 12222222222 22 24888999999999863 334
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+.........-.+....|..-...+++-+.+|.+.+-=+.+....
T Consensus 321 ~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 321 VWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred EEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 433332211111112222333557888888999998777766443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.19 Score=43.18 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=66.0
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc
Q 001396 883 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958 (1086)
Q Consensus 883 v~~l~~sp---dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 958 (1086)
|++|++.. || +.|+.|+.|..|++|+=+. .+...... ..++.++-...+++..+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777765 32 6799999999999998664 22222211 2477888877776655678899999975
Q ss_pred CCccceeccccCCccCEEEEEEeC---CC-CEEEEEECCCcEEE
Q 001396 959 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 998 (1086)
Q Consensus 959 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~s~~~Dg~v~v 998 (1086)
.. +.|.......++++++.. || .-|++|=.+|.|-+
T Consensus 71 ~~----RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQ----RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cc----eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 32 223333344567766544 44 35888888887753
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=2 Score=45.52 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=109.8
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cee-
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV- 872 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~- 872 (1086)
....+.|..+ ..++++..+. .+.....|+.-..+. .-+.....+.... ++..++ ++..|.|+ .... |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy--~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIY--RTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EE--EESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEE--EeCCCCCCe
Confidence 4566777654 4455555553 333433333322221 2223333444433 343333 34455433 3332 221
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCe
Q 001396 873 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 952 (1086)
Q Consensus 873 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 952 (1086)
......-.+.+..+..++||+++++++.-....-||-.... ......... .+|..|.|+|++.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence 22233445778899999999999887766656677755421 112222211 3699999999999988887788
Q ss_pred EEEEE-cCCccceecc---ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccce
Q 001396 953 LAIYE-AEELTCLKQW---FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1028 (1086)
Q Consensus 953 i~vwd-~~~~~~~~~~---~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1086)
|+.=+ ...++....- .....-.+..++|.+++...|+|+ .|++ +...+.|+-=.+.......+.. ..
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n-------~~ 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSN-------LY 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCc-------eE
Confidence 88776 2223222211 111244589999999988888665 5544 3466666554444323333333 33
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEE
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw 1052 (1086)
.+.|.+ .+.-.+-+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 566664 3566667788887655
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.5 Score=44.69 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=124.1
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
....+.++.|+|+.+.|++......-.|+- ...|..+.+.++.+ -.....+++..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEec
Confidence 344599999999999999998876555542 23344455555553 33445678888
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEE-------Ec---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee---
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILT-------IM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--- 872 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~-------~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--- 872 (1086)
+|+++++-. ++.+.++.+.....+.. +. ..+...-.+||+| .++.|..+-+-.-+.||.+..+..
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888877765 67787777665432221 11 1245678899999 566666677777677776653321
Q ss_pred EEEeccc-------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 ISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 ~~~l~~h-------~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|................+-...-.....++..++|.+
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 1111112 13466778876 456677777788777777766432221122222222222234567888888888
Q ss_pred EEEEeCCeEEEEE
Q 001396 945 FLLVHETHLAIYE 957 (1086)
Q Consensus 945 l~~~~d~~i~vwd 957 (1086)
-+++..+-.+.+.
T Consensus 298 YIvSEPnlfy~F~ 310 (316)
T COG3204 298 YIVSEPNLFYRFT 310 (316)
T ss_pred EEEecCCcceecc
Confidence 7777666555443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.06 E-value=3.4 Score=46.38 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.8
Q ss_pred eEEEEecCCCEEEEEeC--CeEEEEEcCCcc--ceeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 934 THIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 934 ~~~~~s~dg~~l~~~~d--~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
--+||+|....+|++++ +.|.||.+.... .++++.-....+...++|-.|.-.|+-.|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 35899999999999644 679999986422 233333344778889999999887776664
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.89 Score=49.37 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=95.0
Q ss_pred EEEeecCCCEEEEEe---C----CeEEEEEccCceEEEEEcCCCC---CeEEEEEcCCCCCEEEEEe-------------
Q 001396 801 CFALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGM------------- 857 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~---d----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~lasg~------------- 857 (1086)
.+-.-|+|+.++++- + |.+.++|-++.+.......... .-..+-+.| ..+.+++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence 344557888888762 1 4588999998888877764332 335667778 666777642
Q ss_pred -------CCCeEEEEEcCCceeEEEecccc--CCeEEEEEeCC--CCE-EEEEeCCCcEEEE-ECCCCceeeeeeeeccC
Q 001396 858 -------DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 858 -------~dg~v~iwd~~~~~~~~~l~~h~--~~v~~l~~spd--g~~-l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~ 924 (1086)
...++.+||+.+.+.++++.--. ..+..|.|..+ ..+ ++.+.-...|..| .-+.++-...+++..+.
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 23589999999999998887422 23556777654 444 3333334444444 33455544445555443
Q ss_pred CCc------c-------CCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccce---eccccC-------C--------
Q 001396 925 GVM------T-------LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCL---KQWFPI-------S-------- 971 (1086)
Q Consensus 925 ~~~------~-------~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~---~~~~~~-------h-------- 971 (1086)
... . ...-|+.+.+|.|.++|.++ ..|.++.||+...... .+...| |
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 210 0 01357999999999999985 6899999999864332 221111 0
Q ss_pred ccCEEEEEEeCCCCEEEEEE
Q 001396 972 SVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~ 991 (1086)
.+...-+..|-||+.|....
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 23446678899998877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.5 Score=47.62 Aligned_cols=253 Identities=10% Similarity=0.034 Sum_probs=105.0
Q ss_pred CccEEEEEE-cCCeEEEEEcCCCc----eeEEecC---CC----CceEEEEEecCCCEEEEEee--CCCCceeEEEEeCC
Q 001396 492 NIHFIFSIS-VDGKIKAWLYDSLG----ARVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES 557 (1086)
Q Consensus 492 ~~~~l~s~s-~dg~i~vwd~~~~~----~~~~~~~---~~----~~i~~~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~ 557 (1086)
+.++|+..+ ..+.|.+.|+.+.. ...++.. .. ..-..+-.-|+|+.++++-. ++++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 445677766 67889999987422 1122221 00 12223444589988887654 34556778899988
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEE--------------------CCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+.+.............--..+.|.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888877765442223456778888888888854 23579999999999999998764322
Q ss_pred CCceEEEecC--CCEEEEEE-CCCcEEEEEC-CCCCee--eeccccccceeeeEEccC-CCceeccccCCeeeecCCCCC
Q 001396 618 ENPRICFNKN--GTLLAVIA-NENRIKILET-PESNSV--DAAGVLSDNLRKLSVNPI-STVTGAGIANGSVSVNEDPKE 690 (1086)
Q Consensus 618 ~v~~v~~s~~--~~~l~~~~-~dg~i~iw~~-~~~~~~--~~~~~~~~~v~~~~~~p~-~~~~~~~~~~~~~~~~~~~s~ 690 (1086)
....+.|..+ ..+=++++ -..+|..|-- ..+... ..+......+..-.+.+. ....++.+-...+.+ |.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i----Sl 321 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI----SL 321 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-----T
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE----cc
Confidence 2445666543 44333332 2344544433 333211 111110000000000000 000000011112222 45
Q ss_pred Ccccc-eeccccCccceeeeeecCC-ccccccccCC------------cccccceEEEEEecCCceEEEeec
Q 001396 691 DVKPE-ISVEAENKSEVEKPLFARP-SECQSLLLPS------------KVKANKISRLTYNNGGQAIFALAS 748 (1086)
Q Consensus 691 d~~~l-~s~~~d~~i~vw~~~~~~~-~~~~~~~~~~------------~~~~~~i~~l~~s~~g~~l~~~~~ 748 (1086)
|.++| +++-..|.+|.||+..... .....+.+.. ..-.+..+-+..|.||+++..+.+
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 56655 5667789999999753221 1111111111 111233467888999998877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=3.5 Score=45.08 Aligned_cols=154 Identities=11% Similarity=0.027 Sum_probs=90.7
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEE-EEcCCceeEEEe-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILI-YNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~i-wd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
...+.++.+.+ ++.++++|. .|.+.. ++ ..++.-... .+-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45788999999 777776554 564443 22 122211112 233457899999999987765 4567664323343331
Q ss_pred eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecccc--CCccCEEEEEEeCCCCEEEEEEC
Q 001396 915 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
...+..+.... ...+..+++.+++..++++.+|.+. .....|+....... .-......+.|..+++.+++ +.
T Consensus 248 --W~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~ 321 (334)
T PRK13684 248 --WSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ 321 (334)
T ss_pred --cccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence 11111111101 1247789999999988888888665 34455554443221 11346788888888777664 47
Q ss_pred CCcEEEEE
Q 001396 993 DGTLSIHE 1000 (1086)
Q Consensus 993 Dg~v~vWd 1000 (1086)
.|.|.-|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.03 Score=39.88 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCce
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 363 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~ 363 (1086)
...|.+++|+|... |||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 34799999999998 7999999999999998 5553
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=3.2 Score=42.43 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=114.8
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
.-...+.|..+|..+-+++.-|.=. ++.+++.+|+......++ ...--..+++..|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d~ 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLP---PRYFGEGITILGDK 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-T---TT--EEEEEEETTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECC---ccccceeEEEECCE
Confidence 3456788878888777777765332 233455666655555553 22333456666666
Q ss_pred CEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-----CCe
Q 001396 809 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV 883 (1086)
Q Consensus 809 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~v 883 (1086)
-+..+..++...+||..+.+.+.++.- .+.=..++ . |++.|+.......++++|..+.+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 566666689999999999999988863 34556666 3 55566666667789999998877666654321 235
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccC-------CCccCCCCceEEEEecCCCEEEEEeC
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
.-|.+- +|...|=.=....|..-|..+|+.....-+..+. .......-...+|+.|.+..+.++..
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 556775 6766666555566777788887765533222211 11111235789999998887777443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.056 Score=38.53 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEec
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 420 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 420 (1086)
...|.+++|||...+||.++.+|.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.1 Score=41.85 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=79.9
Q ss_pred cccEeEEEecCCCCcEEEEEEeCC---------CcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 505 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 505 (1086)
..+.++-..+|+|+ +++-.-.| |.++.|-. +..+..+...-+.-+.++|.. ....+.++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccc-cCcEEEEEccCceEE
Confidence 45677778899999 43322222 22333321 111112222222334556642 222345566777888
Q ss_pred EEEEcC--CCc-----eeEEecC----CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCc
Q 001396 506 KAWLYD--SLG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 574 (1086)
Q Consensus 506 ~vwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 574 (1086)
.-||.+ ++. .+..+.. .......+++..+|++.+++.. .+.|...|+.+|+.+.++.-.. ..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~q 255 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQ 255 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cc
Confidence 888843 322 2222222 1112345666778888877765 5679999999999999999877 88
Q ss_pred eEEEEEecC
Q 001396 575 VSVVHFDTA 583 (1086)
Q Consensus 575 v~~~~~~~~ 583 (1086)
+++++|.-.
T Consensus 256 itsccFgGk 264 (310)
T KOG4499|consen 256 ITSCCFGGK 264 (310)
T ss_pred eEEEEecCC
Confidence 999999754
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.5 Score=51.20 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=97.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceE-------------EEeecccCCccEEEEEEc----------CCeEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-------------SLCPHAKENIHFIFSISV----------DGKIKA 507 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~s~----------dg~i~v 507 (1086)
.++.++.|+.+.-.|.++|+.+..+. ..+.|. .+.-.|--.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 56778889999999999999987763 222221 000000001235666643 688999
Q ss_pred EEcCCCceeEEecCC---------CC--------ce-EEEEEecCCCEEEEEeeCC--------------CCceeEEEEe
Q 001396 508 WLYDSLGARVDYDAP---------GL--------GC-TRMAYSANGRRLFSCGTSK--------------EGESFLVEWN 555 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~d~~~l~~~~~~~--------------~~~~~i~iwd 555 (1086)
+|..+++....+... .+ .+ ..++++++...++....+. .-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999988766431 00 11 2345666655555433211 1235677889
Q ss_pred CCCCeeeeEEeccc--ccC----CceEEEEEec-CCC---EEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 556 ESEGAIKRTYQGLQ--LQH----NSVSVVHFDT-AKD---QILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~--~~~----~~v~~~~~~~-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
.++|+..-.++... ..+ ....-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 99998887776522 000 1112222333 453 78889999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.27 Score=54.67 Aligned_cols=161 Identities=13% Similarity=0.079 Sum_probs=92.5
Q ss_pred CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCC----CEEEEEeCCCcEEEEECCC
Q 001396 838 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg----~~l~s~s~dg~i~iwd~~~ 911 (1086)
.++..++|.- +.+.+.+.- .+|.+++=| .+.+.+|+ .|..+.|+|-+ ..|......+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899984 444444432 233333221 23344444 58999999853 3455567788899999873
Q ss_pred C--ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEE
Q 001396 912 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 988 (1086)
Q Consensus 912 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 988 (1086)
. +..+..+-++-+-.....---..+.|+|....|++ .....-.++++.........-....+.|-+.||..||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2 22222222222111111112356889999999988 44444455666543332222223478999999999998766
Q ss_pred EE-ECCCcEEEEEcCCCce
Q 001396 989 TS-FVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 989 s~-~~Dg~v~vWd~~~~~~ 1006 (1086)
++ |..=.-++||-....+
T Consensus 172 VAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEeCCeEEEEEecCchhhh
Confidence 55 3334578898665533
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.058 Score=63.63 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=77.0
Q ss_pred cEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC
Q 001396 494 HFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 572 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 572 (1086)
..++.|+..|.+-..|+... .....-....++|++++|+.+|+.++.|-. +|.|.+||...++.++.+..+....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 36888888899988887653 222222334568999999999999999875 7789999999999999988877444
Q ss_pred CceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
..+..+.+..++..++++...|. +|...
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 55555666666677888777776 56543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.4 Score=57.23 Aligned_cols=248 Identities=9% Similarity=0.046 Sum_probs=139.0
Q ss_pred CCCeeEEEeecCCCEEEEEe--CC-eEEEEEccCceEEE-----EEcC------CCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 796 QEAVPCFALSKNDAYLFSAS--GG-VISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~--dg-~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
...+..++..+|+...++.. +| .|..||+.+...-. -+.. ...-..++.|.|.=-...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45667788888887766664 33 58999987543322 1111 12334677888743445666778999
Q ss_pred EEEEEcCCce-eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 862 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 862 v~iwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
|++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ..+|.++.|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9888765432 223333 4566899999999999999999999988876543211 222222211 24788888877
Q ss_pred CCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCC
Q 001396 941 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1020 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~ 1020 (1086)
.-.++++-... ++. ...+...+++.+ .-.-||.+.+-..-.+..- ...++...
T Consensus 254 t~eflvvy~n~--------ts~--------~~dpd~y~~~~~------k~kp~g~~nF~E~~d~tpp-----fg~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TSE--------TDDPDSYDQKMY------KIKPDGSANFQETFDITPP-----FGQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------ccC--------cCCchhhhhccc------cccCcceeeeccccCCCCC-----ccccCccc
Confidence 77777662111 110 001111111111 1113444433222211110 11122221
Q ss_pred ccCcccceEEEECCCCCCEEEEEeCC-CcEEEEccCCCCCCCCCCCcccccCCCCCCCCccc
Q 001396 1021 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD 1081 (1086)
Q Consensus 1021 ~~~~~~~~~~~~~p~~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1081 (1086)
|.. ...-..|.|++.+.+++|..- ..|-+|... ..|...-+.+..++..+.++++|
T Consensus 307 h~y--~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 307 HMY--KVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTD 363 (1405)
T ss_pred hhH--HHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCC
Confidence 222 223456887677776666554 468889883 55777777777677766666666
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=10 Score=45.85 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=65.1
Q ss_pred EEeecCCCEEEEEeCCeEEEEEccCceEEEEEc--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEecc
Q 001396 802 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 878 (1086)
Q Consensus 802 l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 878 (1086)
.|..|-..++.+|-+..+++||+...+.++... .....|+.+.+. +..+++|...-.|.++..+. +..+..+.+
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 566777778888889999999998777665433 235667788774 45777777666566544432 233334432
Q ss_pred --ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 879 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 879 --h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
-...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22346666665 44566666666655555443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.059 Score=52.25 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=68.8
Q ss_pred EEEEE-eCCeEEEEEccCceEE-EEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCeEEE
Q 001396 810 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL 886 (1086)
Q Consensus 810 ~l~~~-~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v~~l 886 (1086)
-+++| ++|.|.+|...-.... ..+......|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 34444 5899999987622111 11111223333333333356689999999999999999988888887788 566666
Q ss_pred EEeCCCCEEEEE--eCCCcEEEEECCC
Q 001396 887 VFSDALNILVSS--GGDAQIFVWDVDG 911 (1086)
Q Consensus 887 ~~spdg~~l~s~--s~dg~i~iwd~~~ 911 (1086)
..+..++.++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666677777777 7788888888765
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.98 E-value=4 Score=40.04 Aligned_cols=207 Identities=11% Similarity=0.039 Sum_probs=113.6
Q ss_pred EEEEeCCCcEEEEeCCCCceeE-EeecCCcceEEEeecccCCc-cEEEE-EEcCCeEEEEEcCCCceeEEec-------C
Q 001396 452 VITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKENI-HFIFS-ISVDGKIKAWLYDSLGARVDYD-------A 521 (1086)
Q Consensus 452 l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~-~~l~s-~s~dg~i~vwd~~~~~~~~~~~-------~ 521 (1086)
+..-=..+.|.-||.++.+..+ ++.+ .++.++.+- -.++ +.+++ ++..=.|--||......+.... .
T Consensus 30 l~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilp-v~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 30 LYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILP-VEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEeccCceehhhhhhhheEEEEEec--CcceeEEEE-ecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 3333445567778887755432 2222 223333332 2222 22333 3333334457644332222111 1
Q ss_pred CCCceEEEEEecCCCEEEEEeeCCCC------ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCC
Q 001396 522 PGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH 594 (1086)
Q Consensus 522 ~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg 594 (1086)
...+...-..+|+|++.+ |.....+ .+.++.|-.. ..+..+...- .--+.++|+.+.+.++. -+.+-
T Consensus 107 kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v---~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCV---GISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred HhcccccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhc---cCCccccccccCcEEEEEccCce
Confidence 123556667889999943 3322111 1233444321 1122222211 33467888887766655 55677
Q ss_pred cEEEEE--cCCCeeE-----EEEcCC--CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeE
Q 001396 595 VIKIWD--MNKVQLL-----TTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 595 ~i~iwd--~~~~~~~-----~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
.|.-|| ..+|... ..+... ......-.++...+|++.++.-..++|...|..+++.+..+.-....+++++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 787787 5555432 222211 0112234577788899999999999999999999999999999999999998
Q ss_pred Ec
Q 001396 666 VN 667 (1086)
Q Consensus 666 ~~ 667 (1086)
|.
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 86
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.59 Score=54.16 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=78.2
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEc-----
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----- 510 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~----- 510 (1086)
...-+.-|.-++ ..+..+...++.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555555 44444445689999998887554332 3578999999999999999999999999999843
Q ss_pred CCCc----eeE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 511 DSLG----ARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 511 ~~~~----~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
.... .+. ......++|....|.++|..++.++. ++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 1111 111 12233468899999999998887643 5888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.96 E-value=6.8 Score=47.14 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=57.1
Q ss_pred CCCCeeEEEeecCCCEEEEEeCCeEEEEEccC-ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 795 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
....|..+.++|+|+++|..+...|.|..+.. +.....+.+....|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 45678999999999999999876666666532 111112222222232222221 111111
Q ss_pred EEeccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCC
Q 001396 874 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spd---g~~l~s~s~dg~i~iwd~~~ 911 (1086)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123445777888876 47888888899999999875
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.72 E-value=8.2 Score=42.94 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=78.4
Q ss_pred CCeeEEEeecCCCEEEEEe------------CC-eEEEEEccC--ce--EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 797 EAVPCFALSKNDAYLFSAS------------GG-VISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~------------dg-~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
.....|+|.++|+++++-. .+ .|.+++-.+ |+ ....+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 3456899999999887752 12 677775432 32 2234443444568899998 77 544 4444
Q ss_pred CeEEEEEcCC-------ceeE-EEecc----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEE
Q 001396 860 STILIYNARS-------SEVI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 908 (1086)
Q Consensus 860 g~v~iwd~~~-------~~~~-~~l~~----h~~~v~~l~~spdg~~l~s~s~d-------------------g~i~iwd 908 (1086)
...++.|... .+.+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333334432 1112 22322 12347789999999888766621 3344444
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
.++++. ..+ ..+.. ....++|+++|+++++
T Consensus 171 pdg~~~---e~~--a~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL---RVV--AHGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE---EEE--ecCcC----CCccceECCCCCEEEE
Confidence 444331 111 12222 2567999999999877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.94 Score=52.54 Aligned_cols=124 Identities=9% Similarity=0.083 Sum_probs=76.6
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec-cccCCeEEEEEe--CCCCEEEEEeCCCcEEEEEC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV 909 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~v~~l~~s--pdg~~l~s~s~dg~i~iwd~ 909 (1086)
+...-...+-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334445555555 45555555555699999999887543322 356789999986 79999999999999999854
Q ss_pred CC----CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc
Q 001396 910 DG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958 (1086)
Q Consensus 910 ~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 958 (1086)
.. ........++...-......+|.+..|-++|.+++ +..+.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 21 11111222222211111113688999999998655 45667888774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=2.1 Score=50.80 Aligned_cols=154 Identities=8% Similarity=-0.017 Sum_probs=74.6
Q ss_pred CccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC--ceeEEEEeCCCCeeeeE
Q 001396 492 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 492 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~ 564 (1086)
++..++.||.+ ..+..||..+.+=...-..+.......+..-+++..+.||....+ -..+..||+.+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 45567777765 246667766543222111111111112223456666666632221 25688999887655432
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECC--------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
-.... .... .++ ...++...+.|+.+ ..+.+||..+++....-...... ....+..-+++.++.|+.
T Consensus 422 ~~~p~-~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR--INASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc--ccceEEEECCEEEEEcCC
Confidence 21111 0111 122 22345555556532 23888998877654432211111 111122236777777765
Q ss_pred C-----CcEEEEECCCCCe
Q 001396 637 E-----NRIKILETPESNS 650 (1086)
Q Consensus 637 d-----g~i~iw~~~~~~~ 650 (1086)
+ ..+.+||..+.+.
T Consensus 497 ~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred cCCcccceeEEEeCCCCEE
Confidence 4 4678888776643
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.11 Score=50.57 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=60.0
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE-EEECCCCCEEEEEeCCCEEEEEEecCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VVWSPDGSLLGVAYSKHIVQLYAYHGG 422 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~las~~~d~~i~iwd~~~~ 422 (1086)
+++|+.+|.|.+|++..-...... ...-...|.+ +.--.++.+..+++.+|.|+-|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDR------------------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHHh------------------hhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 789999999999998732111100 1111223333 333345668888999999999999877
Q ss_pred CccccceEecccc-ccEeEEEecCCCCcEEEEEE--eCCCcEEEEeCC
Q 001396 423 SDARQQLEIDAHV-GNVNDLAFSAPCKQISVITC--GDDKTIKVWDAV 467 (1086)
Q Consensus 423 ~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~--~~d~~i~iwd~~ 467 (1086)
+.+. ....|. .++.....+..++ +++.+ |.|..++.|+++
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 6544 233455 4444444444444 44444 556666666654
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.032 Score=36.80 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhhccCchhhhhh
Q 001396 4 LNKDLVFLILQFLNEEGFTESAHI 27 (1086)
Q Consensus 4 ~~~evvrli~q~L~~~G~~~s~~~ 27 (1086)
.+.++.++|+|||...||..|+++
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~ 25 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAET 25 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHH
Confidence 367899999999999999999876
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.047 Score=50.01 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=61.8
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccccccccccccc----CC--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYY----GD--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~----~~--~~~~r~~l~ 139 (1086)
++|.++-+.|+||+..|..++|..++++.-..+.....+.+++|+.+....++.+++...... .. ...+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 899999999999999999999999999865555444677788998888888777766443311 11 367788888
Q ss_pred HHHHh
Q 001396 140 LELKQ 144 (1086)
Q Consensus 140 ~~l~~ 144 (1086)
..|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 88887
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.042 Score=33.74 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhccCchhhhhh
Q 001396 6 KDLVFLILQFLNEEGFTESAHI 27 (1086)
Q Consensus 6 ~evvrli~q~L~~~G~~~s~~~ 27 (1086)
+++-+||.+||.+.||..||.+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~ 22 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKA 22 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHHH
Confidence 5788999999999999999975
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.17 Score=53.33 Aligned_cols=104 Identities=14% Similarity=0.269 Sum_probs=79.3
Q ss_pred HHHHHHHhhhccCchhhhhh----------------ccccHHHHHHHHhCCCHHHHHHhhccC-cccccccccceehhhh
Q 001396 8 LVFLILQFLNEEGFTESAHI----------------FYFDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI 70 (1086)
Q Consensus 8 vvrli~q~L~~~G~~~s~~~----------------~~~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i 70 (1086)
+-.+|+.++...|....+.. +..++.++-+++..||-.-|++.+... ..|.+. ... +.|.+
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~-LE~~L 196 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSS-LEFKL 196 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-ccc-HHHHH
Confidence 46788889998899988877 223577788999999999999988764 223322 222 88999
Q ss_pred hhhhhhhhcCCCCHH--HHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001396 71 RKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFKELAQLL 113 (1086)
Q Consensus 71 ~~q~~~Ell~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~L~~ll 113 (1086)
..+.|++++..|... +|++..|+.++|+........+.|-.+|
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 999999999998877 9999999999999554444455544433
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.045 Score=50.76 Aligned_cols=79 Identities=13% Similarity=0.245 Sum_probs=55.0
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccC----C--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYG----D--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~--~~~~r~~l~ 139 (1086)
++|.++-+.|++|+..+..++|..+|.+.-..+.....+++++|..+....++.+.+....+.. . ...+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 8999999999999999999999999998655554445666888877666665554442222111 1 367788888
Q ss_pred HHHHh
Q 001396 140 LELKQ 144 (1086)
Q Consensus 140 ~~l~~ 144 (1086)
..|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88887
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.03 E-value=7.4 Score=46.85 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=68.9
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccc---cceeeeeeee-cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGA---CSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 425 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~ 425 (1086)
|+.+.+||-..... ...+++.-+... ....++.... ....-.|..+.+||+|++||..|..| |.|-.+-.. .
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~ 116 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--W 116 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--c
Confidence 57788888665443 222333222111 1122333222 22346899999999999999998877 555444210 0
Q ss_pred ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC-CccEEEEEEcCCe
Q 001396 426 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVDGK 504 (1086)
Q Consensus 426 ~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~ 504 (1086)
.....+.+-...|.|=.+.-+.. +.. ..+...|..+.|+|.. ++..|+.-..|++
T Consensus 117 g~~~~~~~g~~~i~Crt~~v~~~---~~~---------------------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~ 172 (717)
T PF10168_consen 117 GKNGEFEDGKKEINCRTVPVDER---FFT---------------------SNSSLEIKQVRWHPWSESDSHLVVLTSDNT 172 (717)
T ss_pred CccccccCCCcceeEEEEEechh---hcc---------------------CCCCceEEEEEEcCCCCCCCeEEEEecCCE
Confidence 00001111122222222221111 110 1233455666777653 4567777778888
Q ss_pred EEEEEcCCC
Q 001396 505 IKAWLYDSL 513 (1086)
Q Consensus 505 i~vwd~~~~ 513 (1086)
+|+||+...
T Consensus 173 lR~y~~~~~ 181 (717)
T PF10168_consen 173 LRLYDISDP 181 (717)
T ss_pred EEEEecCCC
Confidence 888887643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.89 E-value=9.1 Score=39.61 Aligned_cols=214 Identities=12% Similarity=0.124 Sum_probs=124.0
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCC------CCce-eEEeec-----CCcceEEEeecccC------C----cc
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TGSR-TYSFEG-----HGAPVYSLCPHAKE------N----IH 494 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~------~~~~-~~~~~~-----h~~~v~~~~~~~~~------~----~~ 494 (1086)
.-+.|+|+|.+. +-++...-+...+||.. ..+. +-++.. .....+.+.|+... + ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778889999986 1222 233331 12345566654221 1 12
Q ss_pred EEEEEEcCCeEEEEEcCCCce-----eEEecC--CCCceEEEEEecC--CCEEEEEeeCCCCceeEEEEeCCCCeee--e
Q 001396 495 FIFSISVDGKIKAWLYDSLGA-----RVDYDA--PGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIK--R 563 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~-----~~~~~~--~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~ 563 (1086)
.++.+++||+|.-|...-... ...+.. ...-...+++... +.+|...-. ..++|.++|-.=.... .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478899999999997432222 122221 2233456666543 566666543 2667888874422111 0
Q ss_pred EEeccc--ccCCc--e---------EEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec----
Q 001396 564 TYQGLQ--LQHNS--V---------SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 626 (1086)
Q Consensus 564 ~~~~~~--~~~~~--v---------~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 626 (1086)
.+.... ....+ | .-..-.++...=+.|..-|.|-+||+ .|++++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 111110 00000 1 11111222222233445578999997 578888887666555667788765
Q ss_pred --CCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 627 --NGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 627 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.|.+|+---.||+|..+|..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 466777767799999999998887776664
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.6 Score=47.55 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=99.5
Q ss_pred eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe----ccccCCeEEEEEeCCCC
Q 001396 818 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL----EGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 818 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l----~~h~~~v~~l~~spdg~ 893 (1086)
.|+||++. |..+..+.-..+.+..+.|+. +. -|.+...+|++++|++. |+.+... +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 48888874 565555443444888999996 44 55567889999999987 3333321 22334466666666664
Q ss_pred EEEEEeCCCcEE-EEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE--EEEEeC--CeEEEEEcCCccc-eecc
Q 001396 894 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTC-LKQW 967 (1086)
Q Consensus 894 ~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~~~~d--~~i~vwd~~~~~~-~~~~ 967 (1086)
.+.+. +|++. +-+++... .+..+...+... .-.+...-+++.. +...-+ -...++-..++.. ...+
T Consensus 141 avlt~--~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 34333 33333211 111111111111 1123333333221 111111 0111222221111 1111
Q ss_pred ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecccc
Q 001396 968 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1014 (1086)
Q Consensus 968 ~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~ 1014 (1086)
.. ....+..+..||+.++|+-=..+|.|.+-+.+..+..+.+....
T Consensus 213 ~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 213 SW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred CC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 11 14678889999999999999999999999999999998887433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.2 Score=41.84 Aligned_cols=158 Identities=11% Similarity=0.104 Sum_probs=86.2
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe----CC---eEEEE
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY 956 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~---~i~vw 956 (1086)
..++-+.. ..|..+.....|.+|++...+......+.+. +.|..++++..|.||++-. .. .+++|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444432 3444445567799999995554443333333 3588999999999999931 22 45664
Q ss_pred ---EcC--CccceeccccCC---------------------ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCce-eee
Q 001396 957 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCR 1009 (1086)
Q Consensus 957 ---d~~--~~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~-~~~ 1009 (1086)
+.. ....++.-..|| ...+.+++..|-..-|+.|+ ++++.+|.+..... ...
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~ 171 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEK 171 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEeccc
Confidence 322 112222112232 34556666666444455454 56899999887665 332
Q ss_pred eccccccCCC-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1010 ILSTAYLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1010 ~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
+....+.+.. .+...+.+.-+++. ++++|..+ +-.+++..+
T Consensus 172 ~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 172 FSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence 2222222111 12334556667776 36777655 445566554
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=14 Score=41.55 Aligned_cols=272 Identities=16% Similarity=0.088 Sum_probs=134.9
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|.++.+.-.|. +-.|+.|| +..||..+|+.+.... .....+|.++.-+-.| .|.+|+
T Consensus 166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVGT 223 (671)
T COG3292 166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVGT 223 (671)
T ss_pred cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEEe
Confidence 789999999996 45566655 6677888877665311 0111456666555555 466777
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCC--cceEEEe
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC 486 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~--~~v~~~~ 486 (1086)
.+| |++.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|..+ .....+...... +-|. ..|.++.
T Consensus 224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeeccccee-EecCCCCccccccccCCcccccccee
Confidence 787 78877766321110 0111233444444444443 44455444322 233333222222 1121 2233333
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec--CCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
. +.+| -|-+++.+|.+++-+-+-..........+..+...+..| .+..+-.... .+.+.+-+..+|..++.
T Consensus 297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s 369 (671)
T COG3292 297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS 369 (671)
T ss_pred e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence 2 3333 466677777666543321111111111111111111222 1111111111 22355556667776666
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 642 (1086)
..... ...|+.+++..+ ..+-.|+...-+..|+.++ +..+...... ..++|..+.-.|+++ |..|+.+|.++.
T Consensus 370 v~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 370 VHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred eeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 44333 356777777774 4566666665566777666 3333333222 234577777788887 777888775543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.4 Score=50.19 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=91.1
Q ss_pred CCCEEEEEeCCC------EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCC
Q 001396 401 DGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 469 (1086)
Q Consensus 401 dg~~las~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~ 469 (1086)
++..++.|+.++ .+..||..+++-.. ...+.........+. -+++ +++.||.+ ..+..||..++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCCC
Confidence 556666665432 47788887765322 111111111122222 2455 56666654 35778888766
Q ss_pred ceeEE--eecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 470 SRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 470 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+-... +....... +++. -++...+.||.+ ..+..||..+.+=...-..+.......+...+++..+.|
T Consensus 369 ~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 369 KWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred ceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 53221 11111111 1111 144566666632 357778876543222111111111122333466666666
Q ss_pred eeCCCC----ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeE
Q 001396 542 GTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 607 (1086)
Q Consensus 542 ~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 607 (1086)
+.+... -..+.+||..+++....-.... .......+.+ +++.++.|+.+ +.+.+||..+.+-.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 543221 1348899988776543221111 0111222222 55566666643 46788888776543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=93.32 E-value=27 Score=43.22 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=103.4
Q ss_pred CCCCeeEEEee---c----CCCEEEEEeCCeEEEEEccCc---------------eEEEEEcC---CCCCeEEEEEcCCC
Q 001396 795 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 849 (1086)
Q Consensus 795 ~~~~v~~l~~s---~----dg~~l~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 849 (1086)
...+|..|+|+ . ..++|++-....+.|+...-. ..+..+.. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46688888888 2 235787777788888772211 12223321 22356678888877
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
.+.+|+....|...||++..+... +. ... -+.....|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~----------~~~~~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SNL----------RLSRNISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CC-cce----------eeccCCCccc-cCCCccc-----------------
Confidence 778888888888888888211110 00 111 1111222333 2222210
Q ss_pred CCCceEEEEecCCCEEEEEeCCeEEEEEcCCcccee-ccccCCccCEEEEEEeCCC-CEEEEEECCCcEEEEEcCCC
Q 001396 930 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
..-..+.|.++-..|++.....+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 12446888999899999999999999999876643 2233346788888888872 222222 2356877788763
|
These proteins are found in fungi. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.31 E-value=5.9 Score=38.92 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=85.5
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEEcc--CceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEE---Ec
Q 001396 799 VPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---NA 867 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d~ 867 (1086)
...++-++.+.++++++.+.|.+|++. ..+...+|..- +.|..++++. .|++|++--.+. .+|+| +.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 334555554555565678899999988 44556667644 7899999999 899999854332 55664 32
Q ss_pred C--CceeEE-Eeccc---------------------cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee--eeeee
Q 001396 868 R--SSEVIS-KLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQ 921 (1086)
Q Consensus 868 ~--~~~~~~-~l~~h---------------------~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~ 921 (1086)
. ..+.+. .+-|| ..++.+++..|-..-|+.|+ ++.+.+|.+....... ...+.
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 2 111111 22232 23566777777544455555 4569999887533210 00111
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~ 958 (1086)
...........+.-...+=-+.|+|..++..+.++.+
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence 1000000000111222222466777777777777665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=3.3 Score=44.65 Aligned_cols=122 Identities=11% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.++|.++.||+|.+ +||+--.+++|.+.+....+.......+ .+..+..|....|+.+ .-+|.
T Consensus 66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence 45999999999998 7999999999999998443322211100 1123456888999865 77888
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.+..| +.+|-+...+ +.....+.|...|....|.++.+-.+|+++-..+++.=+-+.++
T Consensus 129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 87777 7888776543 22224567888999999999988533444333444443444433
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=17 Score=40.50 Aligned_cols=150 Identities=8% Similarity=0.018 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee---
Q 001396 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--- 915 (1086)
Q Consensus 840 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~--- 915 (1086)
...+..++ ++.+++.|.....++-||--... ..... .-...++++.|.+++.+++.+ .+|.+ +|..+.+..-
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNR-ASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecC-CCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 34456677 77777766544333334432110 11122 234568999999998887755 56654 4444443211
Q ss_pred eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccc--cCCccCEEEEEEeCCCCEEEEEECC
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
....+...... ..+..+.|.+++..++++..|.+.... ..|+...... ..-......+.|.++++.+++| .+
T Consensus 317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 11111111111 247889999999999999888776654 4444433222 2225678899998888777755 78
Q ss_pred CcEEEE
Q 001396 994 GTLSIH 999 (1086)
Q Consensus 994 g~v~vW 999 (1086)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 877654
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.6 Score=44.36 Aligned_cols=142 Identities=8% Similarity=0.030 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--e-eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Q 001396 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 916 (1086)
Q Consensus 840 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~ 916 (1086)
.+.+-|.. .++.|.+. ..|.+.=|-.... . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 35566664 34444433 3444555554422 1 222222356799999999999999999999999999986544222
Q ss_pred eeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEE
Q 001396 917 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 988 (1086)
Q Consensus 917 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 988 (1086)
........+. ..|....|+.. .-+|...+..+.+|..............|...|.--.|.++-+.++
T Consensus 103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 1111111121 24778888776 6666666667777776544333333556777787778888876544
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.03 E-value=13 Score=38.65 Aligned_cols=243 Identities=11% Similarity=0.094 Sum_probs=118.2
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECCCC-------Ceeeeccc-----cccceeeeEEccCCCceeccccCCeeeecC
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~-----~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
-+.++++|.+.+-++....+...+||.... ..+..+.. .....+.+.|+..... .+..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F----------~vt~ 94 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF----------VVSG 94 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce----------EEcC
Confidence 478999999988888888899999998621 11111111 0112333333322211 1111
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccc-cccCCcccccceEEEEEe--cCCceEEEee-ccceeEEeeccCCcc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LLLPSKVKANKISRLTYN--NGGQAIFALA-SNGVHLMWRWPRNDL 762 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~s--~~g~~l~~~~-~dg~i~vw~~~~~~~ 762 (1086)
........++.+++||+|.-|............ +.+.......--..+++. ..+.+|.++. .+++|.|+|-.-...
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 111122346788999999999965433310000 111111112222344444 3345555543 368888887544332
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-eCCeEEEEEccCceEEEEEcC--CCCC
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMP--PSPT 839 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~ 839 (1086)
...+...... +..+.... .+...+..--|+-..-.++++.=+.+ .-|.|-+||+. |..++++.. .-..
T Consensus 175 ~~~g~F~DP~------iPagyAPF--nIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa 245 (336)
T TIGR03118 175 PLPGSFIDPA------LPAGYAPF--NVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA 245 (336)
T ss_pred cCCCCccCCC------CCCCCCCc--ceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence 2222211100 00000000 00000000001111111222111112 23679999985 777777642 2234
Q ss_pred eEEEEEcC-----CCCCEEEEEeCCCeEEEEEcCCceeEEEecccc
Q 001396 840 ATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 880 (1086)
Q Consensus 840 i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 880 (1086)
-..|+..| -.+.+|+---.||+|..+|..+++.+..+..-.
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 45566544 257788877789999999999999888777533
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=92.87 E-value=11 Score=39.91 Aligned_cols=169 Identities=9% Similarity=0.056 Sum_probs=95.2
Q ss_pred eEEEEEccCceEEEEEcCC------CCCeEEEEEcCCCC----CEEEEEe-CCCeEEEEEcCCceeEEEecccc------
Q 001396 818 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGHS------ 880 (1086)
Q Consensus 818 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~------ 880 (1086)
+|.+||+.+.+.++++.-+ .+....+.+...++ .++.... ..+.|.|+|+.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999988876432 34567787766222 2444433 33589999999987655443321
Q ss_pred -------------CCeEEEEEeC---CCCEEEEEeCCCcEEEEECCCCceee-----ee----eeeccCCCccCCCCceE
Q 001396 881 -------------KRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT-----CR----SLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 881 -------------~~v~~l~~sp---dg~~l~s~s~dg~i~iwd~~~~~~~~-----~~----~~~~~~~~~~~~~~v~~ 935 (1086)
+.+..++.+| ||++|....-.+ -++|.+.+..... .. .++...... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~---~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG---SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccC---CCCce
Confidence 2356666665 666666655443 3455544311110 00 011110000 13567
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCcc---ceeccc-cCC-ccCEEEEEEeC--CCCEEEEE
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQATFSC--DCRMVFTS 990 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~l~fs~--dg~~l~s~ 990 (1086)
++++++|.+..+ ...+.|..|+..+.- ....+. ... -..+..+.+.+ +|.+.+.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 899999998888 688899999988621 111111 122 45788899988 77766655
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.80 E-value=9.3 Score=44.38 Aligned_cols=185 Identities=10% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEEecC
Q 001396 458 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 458 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d 534 (1086)
--.|+|++ .+|+.+.++.-..+.+..+.|+ +.+.|+....+|++++|++-...... ........|..+.|..+
T Consensus 63 ~~~I~If~-~sG~lL~~~~w~~~~lI~mgWs---~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFN-ISGQLLGRILWKHGELIGMGWS---DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEe-ccccchHHHHhcCCCeeeeccc---CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 34588888 5777776654444477778885 33579999999999999875433222 11223334655666666
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe--cCCC-EEEEEECCCc--EEEEEcCCCeeEEE
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKD-QILAAGDDHV--IKIWDMNKVQLLTT 609 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~s~dg~--i~iwd~~~~~~~~~ 609 (1086)
|-.+.+.+ +++.+-+-......+++..-. .......+|. +++. ..+...-+-. ..+...... ..+.
T Consensus 139 GVavlt~~------g~v~~i~~~~~~~~~~~~diP--~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-~~q~ 209 (829)
T KOG2280|consen 139 GVAVLTVS------GQVILINGVEEPKLRKMPDIP--YNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-RVQL 209 (829)
T ss_pred ceEEEecC------CcEEEEcCCCcchhhhCCCCC--CccCCCcceeEecCCCcceeEEeechhhhhcccceecc-cccc
Confidence 65555543 234443322222223333211 0111112221 2211 1111111100 011111111 0111
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
.........+..++.||+.++|+.-..+|.|.+-+.+..+.+..+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111122457789999999999999999999998888666554444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.71 E-value=13 Score=37.78 Aligned_cols=192 Identities=12% Similarity=0.105 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q 001396 840 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 840 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 919 (1086)
-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+...
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--- 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--- 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---
Confidence 45677788 88888888888889889999998776666666667778889999888875444 35555555555332
Q ss_pred eeccCCCccCCCCceEEEEecCCCEEEEEeC----------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEE
Q 001396 920 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFT 989 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s 989 (1086)
.+.+..+.. .......|.++|.+-+++.. +.|++|+... ......+|..|||+..++
T Consensus 139 f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 139 FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEEE
Confidence 333333322 46788999999999888533 3455665432 345567899999998888
Q ss_pred EECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 990 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 990 ~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.-.+..|..-|-.++... .+.....+... ...+-.+|+ +..-++....|.++.+|.+...
T Consensus 206 slagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 206 SLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred eccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence 777777777776666222 22211111111 123345563 6777777777888888776544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=5.8 Score=46.00 Aligned_cols=185 Identities=11% Similarity=-0.042 Sum_probs=92.9
Q ss_pred cCCCEEEEEe-C-----CeEEEEEccCceEEE--EEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcee--E
Q 001396 806 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV--I 873 (1086)
Q Consensus 806 ~dg~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~--~ 873 (1086)
.++..+++|+ + ..+..||..+.+-.. .+....... +++ .- ++++.++|+.++ .+..||..+++- +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455555554 2 247778877654322 222111122 222 23 778888888643 678888765532 2
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 950 (1086)
..+....... .+..-+|+..+.||.++ .+..||..+..-.. ....... .-...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~~m~~~-----r~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GPSTYYP-----HYKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CCCCCCc-----cccceEEEECCEEEEEC--
Confidence 2232111111 22233788888888654 46788877654222 2111111 11122334566666665
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECC-----CcEEEEEcCCCce
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1006 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D-----g~v~vWd~~~~~~ 1006 (1086)
|.+.+||..+++....-...+...-.++ ..-+|+..+.||.+ .+|..||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3577888877654322111111111122 23477788888765 3466666665544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.60 E-value=3.1 Score=46.27 Aligned_cols=151 Identities=14% Similarity=0.051 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCCEEEEEe-----------CCC-eEEEEEcCC--ce--eEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 001396 838 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD 901 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 901 (1086)
.....++|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++| +++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4557889998 788777642 223 777776543 22 223443334456889999998 555 3444
Q ss_pred CcEEEEECCCCc-e--eeeeeeeccCCC-ccCCCCceEEEEecCCCEEEE-EeC-------------------CeEEEEE
Q 001396 902 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE 957 (1086)
Q Consensus 902 g~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~i~vwd 957 (1086)
...++.|.+... . .....+..+... .........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433344554321 1 111222322221 001124678999999988776 411 3455555
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
..+++. ..+..+ -.....++|+++|.++++-..+
T Consensus 171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEEecC-cCCCccceECCCCCEEEEccCC
Confidence 554432 222333 3445689999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.50 E-value=17 Score=40.65 Aligned_cols=201 Identities=12% Similarity=0.012 Sum_probs=105.1
Q ss_pred eecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-
Q 001396 804 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 880 (1086)
Q Consensus 804 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 880 (1086)
..-|++.++...+|.|.-.|..+++.+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4446666666667888888888888765444332 3333334444 565 6668889999999998999888777555
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe--CCeEEEEEc
Q 001396 881 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 958 (1086)
Q Consensus 881 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~i~vwd~ 958 (1086)
-.+..-..-.++..++ .+.++.+.-.+-.+++..-.......... .+..--...++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222222333222 22566666666665553221111110000 011111133333333333 445666677
Q ss_pred CCccceeccccCC---ccCEEEEEEeC-----CCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 959 EELTCLKQWFPIS---SVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 959 ~~~~~~~~~~~~h---~~~v~~l~fs~-----dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.+|...-.....+ ...+....... .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 6666554421111 11110011111 112235666778888889999999888774
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.45 E-value=32 Score=41.86 Aligned_cols=119 Identities=13% Similarity=-0.041 Sum_probs=77.4
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC-ceeeeeccc
Q 001396 936 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1013 (1086)
Q Consensus 936 ~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~ 1013 (1086)
.|+-|-..+++++....+++||+...+.++.....+ ...|+++++ .+..+++|...-.|.++..+.. +.+-.+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-- 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-- 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe--
Confidence 566677778888888999999998888777655444 566777765 3456777766556665555433 2332333
Q ss_pred cccCCCCccCcc--cceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCCCCCCccc
Q 001396 1014 AYLRPTTSCLHV--YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1068 (1086)
Q Consensus 1014 ~~~~~~~~~~~~--~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~p~~ 1068 (1086)
++++ +..++.+- |-+.+|.|+.=|.+.+-.++..-.+.....|.+
T Consensus 1015 --------dD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~ 1061 (1205)
T KOG1898|consen 1015 --------DDPVPRHVTALELL--DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTE 1061 (1205)
T ss_pred --------CCCccceeeEEEEe--cCCceeeccccCcEEEEECCCcchhhhccCCcc
Confidence 1222 12233332 567899999999999999987665555555555
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=7.5 Score=45.04 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=72.3
Q ss_pred CccEEEEEEcC--CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 492 NIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 492 ~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
++...+.|+.+ ..+..||..+.+=..............+..-+|+..+.||.++. ...+..||..+.+....-.-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence 55666777654 35677776543222111111112122233346776677665332 3567889988765543211111
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CcEEEEE
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE 644 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~ 644 (1086)
.......+ .-++...+.| |.+.+||..+++-...-...... ...-+..-+++..++|+.+ ..+..||
T Consensus 397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence 01111122 2344444444 35778998877655433322211 1222223357777777754 3466777
Q ss_pred CCCC
Q 001396 645 TPES 648 (1086)
Q Consensus 645 ~~~~ 648 (1086)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6655
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.13 Score=59.35 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=100.4
Q ss_pred CeEEEEEcc--CceEEEE-----EcCCCCCeEEEE---EcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEE
Q 001396 817 GVISLYIVM--TFKTILT-----IMPPSPTATSLA---FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 886 (1086)
Q Consensus 817 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~---~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l 886 (1086)
|.+.||++. .|+.... .......+.-+. |-+ +.-++..+..++.|++....+... ..+.+|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 678888875 3433222 222233333344 444 556777888889999887765433 4455687766654
Q ss_pred E-----------EeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC-------CE--EE
Q 001396 887 V-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------TR--FL 946 (1086)
Q Consensus 887 ~-----------~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-------~~--l~ 946 (1086)
+ .||||+.+|.++.||.++.|.+.-......+++..-+.|.. .+-.|.-|...- .+ ++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 4 58999999999999999999875333333344443333332 122222244332 22 22
Q ss_pred EEeC--CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCE------------EEEEECCCcEEEEEcCC
Q 001396 947 LVHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM------------VFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 947 ~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~------------l~s~~~Dg~v~vWd~~~ 1003 (1086)
++.| ..+++|.....+|+.... ...|..+. -+||+. +++.+.|++|.+|.-..
T Consensus 309 tttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ecccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 3333 458999887777763222 22333333 333331 23455677888886443
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.37 E-value=29 Score=39.17 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
..+|.++.+...|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+.+.
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 47889999998885 45677888 788888887655421 112335777777777776 66677554 77777555
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.20 E-value=8 Score=34.73 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=67.7
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeee---eeeeeeeccccceeeeeeeecCCCccEEEEEECC-----CCCE
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSL 404 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~ 404 (1086)
.-.|..... -|++++.-|.|.|.+......... ..++ +-.-...|++++-.+ +...
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCE
Confidence 345555555 478888889999999875432211 0111 112335677776443 3456
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC--cEEEEEEeCCCcEEEEeCCCCc
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~--~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
|+.|+.. .+..||+.....+. ++.-.+.|.++.+-.-+. ..+++.|+ ...|.-+|.+..+
T Consensus 67 LliGt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 67 LLIGTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNE 128 (136)
T ss_pred EEEeccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcE
Confidence 7777554 59999999876554 334456677777732211 11444444 7788888854333
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.71 Score=49.31 Aligned_cols=158 Identities=9% Similarity=0.085 Sum_probs=97.4
Q ss_pred CCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEE-EE-cCCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001396 795 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TI-MPPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 866 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~-~~-~~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d 866 (1086)
....+..+-..|||+.+.+-+...+.++++.+..... ++ ....+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567788899999999999888889999886543221 11 11122 122 222233 67778889999988877 4
Q ss_pred cCCc-e----eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 867 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 867 ~~~~-~----~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
+..+ + .++.++-...++..+.--.+.+-+++-+..|++.++.-...+. ...+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhhh------cCcceeeeCcc
Confidence 4332 1 1222222223333333333446677888888888776544221 1111111 13678999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcc
Q 001396 942 QTRFLLVHETHLAIYEAEELT 962 (1086)
Q Consensus 942 g~~l~~~~d~~i~vwd~~~~~ 962 (1086)
+.+|++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.3 Score=51.30 Aligned_cols=147 Identities=11% Similarity=0.035 Sum_probs=91.0
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-----EEeecC------CcceEEEeecccCCccEEEEEEcCCeE
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKI 505 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-----~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg~i 505 (1086)
++..+...+|+....++..+.+-.|..||+++-..- .-|..| .....++.|+|... ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677777877545666666668899998753211 111111 22334455655432 245667788888
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc-CCceEEEEEecCC
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK 584 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~ 584 (1086)
++..+........--.-....++++|+|.|+.++.|-. .+++.-|-. +.+....+.+.... ...|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence 88866544433333334457899999999999999865 556666653 34444444443322 3679999998877
Q ss_pred CEEEE
Q 001396 585 DQILA 589 (1086)
Q Consensus 585 ~~l~~ 589 (1086)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.27 Score=56.96 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCcee-EEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCC--CceeeeeeeeccCCCccCCCCce
Q 001396 859 DSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 859 dg~v~iwd~~~~~~-~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.+.+++-+..+.-. ...++|..+.|-.+.|..-. ..++ -.-|.+.||+++- |+......+............|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 35567666654321 13345677778888885321 1111 2346789999863 44433333332222222113455
Q ss_pred EEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEE-----------EeCCCCEEEEEECCCcEEEEEcC
Q 001396 935 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
.+-|-+...++..+ .++.+++..+.+... .++.+|..+++.++ .||||+.+++++.||.+++|...
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 55556666666665 445666665554333 44556877776665 48999999999999999999864
Q ss_pred -CCceeeeeccccccCCC
Q 001396 1003 -NLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 1003 -~~~~~~~~~~~~~~~~~ 1019 (1086)
+|....+.. +.|.|+.
T Consensus 266 i~g~~~~rcl-hewkphd 282 (1283)
T KOG1916|consen 266 ITGKIVHRCL-HEWKPHD 282 (1283)
T ss_pred eeccccHhhh-hccCCCC
Confidence 343332322 4455554
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.84 E-value=22 Score=37.77 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=89.6
Q ss_pred cEEEEeCCCCceeEEeecC------CcceEEEeecccCC----ccEEEEEEcCCeEEEEEcCCCceeEEecCCC------
Q 001396 460 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------ 523 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------ 523 (1086)
.|.+||+.+++.++++.-. .+.+..+.+...+. +...++-+..+-|.++|+.+++.........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899999988776432 45567777755332 3344455556789999998877655433211
Q ss_pred -------------CceEEEEEec---CCCEEEEEeeCCCCceeEEEEeCCCC-----e---------eeeEEecccccCC
Q 001396 524 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEG-----A---------IKRTYQGLQLQHN 573 (1086)
Q Consensus 524 -------------~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~-----~---------~~~~~~~~~~~~~ 573 (1086)
..+..++.+| +++.|....-++ -.+|.+.+. . .++.+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 1244555554 555665543211 122222211 0 01111 111 13
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEEcCCC---eeEEEE-cCCCCCCCCceEEEec--CCCEEEEE
Q 001396 574 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTI-DAGGGLPENPRICFNK--NGTLLAVI 634 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~v~~s~--~~~~l~~~ 634 (1086)
....++++++|..+++--..+.|..|+..+. +....+ ........+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 5567888999888888889999999998861 112222 2222234556777777 55544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.63 Score=32.11 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCceEeeecCCCc--eEEEEEeccCcEEEEecCCC
Q 001396 329 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG 361 (1086)
Q Consensus 329 ~~V~~~~~spdg~--~lla~gs~dg~v~iwd~~~~ 361 (1086)
+.|.+|+|||+.. -||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888888899999999864
|
It contains a characteristic DLL sequence motif. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=32 Score=38.39 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=83.4
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCcc
Q 001396 883 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 962 (1086)
Q Consensus 883 v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~ 962 (1086)
...+..++||.+++.+..-..++-||-.... ...+..... ..+..+.|.++|..++++..|.+.. ....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765543333334432200 111222211 2588999999999999887777544 334443
Q ss_pred -----ceeccccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 963 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 963 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
........ ....+.++.|.+|+..+++ +.+|.+.... +.|+.-.+.......+. ..| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12211111 1345899999988876664 5788776654 44443222221111111 233 677765
Q ss_pred CCEEEEEeCCCcEEEE
Q 001396 1037 PTQFAVGLTNGEVYVI 1052 (1086)
Q Consensus 1037 ~~~l~~~~~dg~v~vw 1052 (1086)
.+...+.+.+|.|..|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3567777888887765
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.94 Score=31.27 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.7
Q ss_pred ccEEEEEECCCC---CEEEEEeCCCEEEEEEecCC
Q 001396 391 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG 422 (1086)
Q Consensus 391 ~~V~~l~~spdg---~~las~~~d~~i~iwd~~~~ 422 (1086)
+.|.++.|||+. .+||.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=28 Score=38.96 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.8
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
+.+||+.+.+-...-..+.. .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322221111 11223444456777777653
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=90.35 E-value=43 Score=39.28 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCce--eEEecCC-CCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
..++..++.+..+|.+....+..... ....-+. .....++++..+| .+++.|+.. |++.+..|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence 45667899999999998887766442 2222222 3445666766665 466666653 4788888886666777777
Q ss_pred ecccccCCceEEEEEecC----CC------EEEEEE---CCCcEEEEE
Q 001396 566 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD 600 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~----~~------~l~~~s---~dg~i~iwd 600 (1086)
... ++|..+++.+. .. .+++++ .+|.+++..
T Consensus 297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 664 48888887532 22 566654 466777764
|
... |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.25 E-value=12 Score=36.20 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=60.9
Q ss_pred CCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEE--EEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccC
Q 001396 807 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATS--LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 881 (1086)
Q Consensus 807 dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~--l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 881 (1086)
+|.++.+.+ ...|++||+.+++.+..-.-....+.. +.-. +..+.+-.-.+|.-..+|..+.+++..+. -.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 455666554 356999999999887765433222211 1111 33455556678899999999988877665 233
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 882 RVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 882 ~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.=+.++ .|++.|+.++...+++.-|-++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 334443 3666677665555666655544
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=90.19 E-value=32 Score=37.53 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=35.9
Q ss_pred CccEEEEEEcC-----CeEEEEEcCCCceeEEecCC-CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 492 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 492 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
++.+.+.|+.. ..+..||+.+.+=...-... .......+...+++..+.|+.+......+..||+.+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 44566666642 35677776654322211111 1122233344567777777653322234678898876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.12 E-value=13 Score=40.40 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--eeE-----EEeccccC--------CeEEEEEeCCCCE
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALNI 894 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~v~~l~~spdg~~ 894 (1086)
+.+..+.+.++++++ ++.+++|. +..+++.. + ..+ ..+..-.+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~-~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRF-YAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEE-EEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 567788888635544 44566666 66555543 1 111 11111111 3347888889988
Q ss_pred EEEEeCC------CcEEEEECCCCceeeeeeeeccC-------CCccCCCCceEEEEecCCCEEEEE------eCC----
Q 001396 895 LVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET---- 951 (1086)
Q Consensus 895 l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~---- 951 (1086)
+++.=.+ ..|+.++.+ +.......+...- ........+.+++++|||+.|.+. .|+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887666 778888776 3332211111110 112223578999999999955442 222
Q ss_pred -------eEEEEEcCC-ccceeccc--cC------CccCEEEEEEeCCCCEEEEEE-----CCCcEEEEEcC
Q 001396 952 -------HLAIYEAEE-LTCLKQWF--PI------SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1002 (1086)
Q Consensus 952 -------~i~vwd~~~-~~~~~~~~--~~------h~~~v~~l~fs~dg~~l~s~~-----~Dg~v~vWd~~ 1002 (1086)
.+..||..+ +....++. .. ....|+.+.+-+|+++|+-== ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 234455554 32222221 11 357899999999999776321 23345555544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.02 E-value=9.8 Score=44.96 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=93.5
Q ss_pred CCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEE
Q 001396 808 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 887 (1086)
Q Consensus 808 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~ 887 (1086)
+.+++++..+.|.||+........ ...++..+...| ... ...|+.+..|. ..|. |..|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCce--eeEEE
Confidence 788888999999999986432211 011112222222 111 12233333332 1121 33332
Q ss_pred Ee--CCCCEEEEEeCCCcEEEEECCCCc-----e----e--eeeeeeccCCCccCCCCceEEEEe--cCCCEEEEEeC-C
Q 001396 888 FS--DALNILVSSGGDAQIFVWDVDGWG-----I----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHE-T 951 (1086)
Q Consensus 888 ~s--pdg~~l~s~s~dg~i~iwd~~~~~-----~----~--~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~d-~ 951 (1086)
.. -+...|+.+.+||.|.+|.++.-. . . ..+..-.+.-+........++++. ...++||++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 244678888888888888653200 0 0 000000011111112457889998 88888988755 4
Q ss_pred eEEEEEcCCc--cceeccccCCccCEEEEEEeCCC---C---EEEEEECCCcEEEEEcC
Q 001396 952 HLAIYEAEEL--TCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 952 ~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg---~---~l~s~~~Dg~v~vWd~~ 1002 (1086)
.|.||-.... +....-...|...|.+|.|-++. . +|++++-.|.+-+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 5666655432 22111112357789999997744 2 78889999999998873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=89.57 E-value=39 Score=37.69 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=104.2
Q ss_pred EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc-ceEEE
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVYSL 485 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~~ 485 (1086)
.+..+|.|.-.|.+++..+-..... +....+..-.+..+|+ ++.++.++.+...|..+|+.+........ .+..-
T Consensus 73 ~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 73 VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3356777777777776533211111 1112222233333776 67788899999999889999887765551 11111
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC---CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+ ..+ ..++.++.++.+...+..++.......... ..+..-....++...+ +..+ . ++.+.-.|..+|...
T Consensus 149 ~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~-~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 149 PV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDG-Y-DGILYALNAEDGTLK 222 (370)
T ss_pred cE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCC-C-cceEEEEEccCCcEe
Confidence 11 112 244455577888888887777766544432 1111111122333333 3221 1 335777788788776
Q ss_pred eEEecccccC-CceEEEEEec-----CCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 563 RTYQGLQLQH-NSVSVVHFDT-----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 563 ~~~~~~~~~~-~~v~~~~~~~-----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
-......... ..+....... .+..++.++.++.+...|..+++.+......
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 5543222000 0110000000 1223456777888999999999999888754
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.2 Score=30.28 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=22.8
Q ss_pred ccCCCCceEeeecCCCceEEEEEecc--CcEEEE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW 356 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~d--g~v~iw 356 (1086)
......-....|||||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34445678899999999887777777 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.48 E-value=11 Score=36.40 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=95.0
Q ss_pred CCCEEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 401 DGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 401 dg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|.++.+.+. ...|++||+.+|+.+... .+. ...+..=-...-|...+.++ -.+|...++|..+-+++..+. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~-~l~--~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~-y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE-KLA--PDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFS-Y 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEe-ecC--CccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccc-c
Confidence 5566666644 346999999998765422 121 11111111122233323333 358888899998888887664 3
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCce---EEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGC---TRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i---~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.=+.++. |+..|+.+....+++.-|..+....... ...+.+| +.+.| -||...+-.-. ...|..
T Consensus 130 ~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~----t~~I~r 200 (262)
T COG3823 130 EGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQ----TTRIAR 200 (262)
T ss_pred CCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeee----ecceEE
Confidence 333444542 4456777777777777666554433221 1122222 22333 24444443322 223666
Q ss_pred EeCCCCeeeeEEeccc---------ccCCceEEEEEecCCCEEEEEE
Q 001396 554 WNESEGAIKRTYQGLQ---------LQHNSVSVVHFDTAKDQILAAG 591 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~s 591 (1086)
.|.++|+.+..+.... .+.+-.+.+++.|++..++..+
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6777777665543221 1234677889999886665544
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.21 E-value=25 Score=43.95 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=100.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE--------eCCCCEEEEEeCCCcEEEEECCCCceeeeee-
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS- 919 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~--------spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~- 919 (1086)
=++..+| -|+.+.+|++.++.....+.+-...|..+.. -|.=++|...+.--.|.|+-+.-.+......
T Consensus 90 I~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 90 IGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred hcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 4555443 4788999999998877888877777776654 3344566666666668887665433221111
Q ss_pred ----eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEc--CCc---c-ce----------------eccccCCcc
Q 001396 920 ----LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA--EEL---T-CL----------------KQWFPISSV 973 (1086)
Q Consensus 920 ----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~--~~~---~-~~----------------~~~~~~h~~ 973 (1086)
++.... ...|.++....+|+.+.+|.||.++=.-. ..| + |. .++...+..
T Consensus 168 f~~~~~i~~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTSFKISVD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccceeeecC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 111111 13588899899999999999985442222 211 0 11 111124577
Q ss_pred CEEEEEEeCCCCEEEEEECCCcEEEEEcCC-Cceeeee
Q 001396 974 PISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 1010 (1086)
Q Consensus 974 ~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~-~~~~~~~ 1010 (1086)
+|..+.....-..+.+-+..|+|++|++.. |....++
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~ 281 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRF 281 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceee
Confidence 999999988878899999999999999987 5444443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.14 E-value=28 Score=35.44 Aligned_cols=167 Identities=8% Similarity=0.062 Sum_probs=92.5
Q ss_pred eeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001396 785 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTIL 863 (1086)
Q Consensus 785 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~ 863 (1086)
...+.++............|.++|.+-.++..|.---.|-.+ ..+..+.. ....-..++..| +|.+.++.-.+..|-
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaia 213 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIA 213 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceE
Confidence 334444443356677889999999999988643211111111 11222222 223456788889 787777777777787
Q ss_pred EEEcCCce--eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 864 IYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 864 iwd~~~~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
..|..++. .+..-.+....-..+.-+|.|+.-+|....+.+.-+|-.... ....+.+.... .-.++.....
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~ 286 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRH 286 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccC
Confidence 77776662 222222212234455667788888887777777777766522 12222222111 3445666666
Q ss_pred CCEEEE-EeCCeEEEEEcCC
Q 001396 942 QTRFLL-VHETHLAIYEAEE 960 (1086)
Q Consensus 942 g~~l~~-~~d~~i~vwd~~~ 960 (1086)
|+.-++ ...+.|.-+|..+
T Consensus 287 grVW~sea~agai~rfdpet 306 (353)
T COG4257 287 GRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CcEEeeccccCceeecCccc
Confidence 665554 3445566666544
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.92 E-value=57 Score=42.20 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=89.1
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.|-..++.|.-+|+|.+ +=. .|+.++.||..++ .|.+. -..-...++.++-.-||+..
T Consensus 360 aH~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~---------~Wk~~----------~~~~d~~~S~Ls~qgdG~lY 417 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTA---------RWKPP----------PDKSDTPFSSLSRQGDGKLY 417 (1774)
T ss_pred HHHHHhhccccCCCCCe-EEe--ecCceeeeccccc---------eecCC----------CCcccchhhhhcccCCCceE
Confidence 46667788888888875 322 5678888887654 23311 11123456666666677766
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC------ce--eEEeec
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG 477 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~------~~--~~~~~~ 477 (1086)
| =+.+ .|-|+..+.... ..-..+.+...+++|.- .+.++-....+.+|++... +. ...+.+
T Consensus 418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 6 2222 244555543211 22345778888999983 3667776667799998754 11 122233
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
-.....++.++ ++ .|+++..+|.++.=++..
T Consensus 487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence 33345566663 23 688899999888776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.56 E-value=49 Score=37.48 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
+...-+..+.|+|.|||+ +|++--..|.|++++..++.......+. .............|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~------------~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP------------EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC------------ceeccCCCCceeeEEECCCc
Confidence 344445789999999997 5666544699999986655422111110 00011135778899999884
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.2 Score=41.34 Aligned_cols=31 Identities=39% Similarity=0.606 Sum_probs=25.7
Q ss_pred ccEEEEEECCCC------CEEEEEeCCCEEEEEEecC
Q 001396 391 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 391 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~ 421 (1086)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.23 E-value=17 Score=40.19 Aligned_cols=149 Identities=9% Similarity=0.057 Sum_probs=90.3
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC------CccEEEEEEcCCeEEEEEcCCCc
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG 514 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~~ 514 (1086)
+-...+...+++..|+....++-.|++.|+.+..+..|...| +.+.|.. +.+.|+ |-.+..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333434444567778888889999999999999998887763 3443322 122344 4444445445555443
Q ss_pred eeEEecCCCC-----ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 515 ARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 515 ~~~~~~~~~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
.......... ...+..- ....++++++. .|-|++||.-..+....+.+.. ..|..+..+.+|+++++
T Consensus 549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~----kGDirLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila 620 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASR----KGDIRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA 620 (776)
T ss_pred Cceeeeeehhcccccccccccc-ccCceEEEecC----CCceeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence 2222111111 1222222 34457888776 4459999966555555566655 78999999999999988
Q ss_pred EECCCcEEEEEc
Q 001396 590 AGDDHVIKIWDM 601 (1086)
Q Consensus 590 ~s~dg~i~iwd~ 601 (1086)
.+. ..+.+-|+
T Consensus 621 TCk-~yllL~d~ 631 (776)
T COG5167 621 TCK-NYLLLTDV 631 (776)
T ss_pred eec-ceEEEEec
Confidence 775 34555554
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=87.69 E-value=12 Score=42.12 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=62.2
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC------CEEEE--Ee-
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLL--VH- 949 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~l~~--~~- 949 (1086)
.-...+.|+|.|||++|++--..|.|++++-.++.......+..... ....+....|+|+|+- .+|.+ +.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 34457889999999888876556999999865543221111111100 0012468899999884 34433 21
Q ss_pred --------CCeEEEEEcCCc--cc--eecccc----CCccCEEEEEEeCCCCEEEEEECC
Q 001396 950 --------ETHLAIYEAEEL--TC--LKQWFP----ISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 950 --------d~~i~vwd~~~~--~~--~~~~~~----~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
...|.-|.+... .. ...++. .....-..|+|.|||.++++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223544554321 11 111111 112234567899999877766654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.58 E-value=10 Score=47.75 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=47.6
Q ss_pred CceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCce
Q 001396 932 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1006 (1086)
Q Consensus 932 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~ 1006 (1086)
.+.+..+...+..+.....+.+-+|+.........+...+... +.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence 4455555555665655666667777766554444433322222 88999999999999999999999866
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.52 E-value=46 Score=36.23 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=55.8
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcee-eeeeeeccCCCccCCCCceEEEEecCCCEEEEEe------CCeEEEEEc
Q 001396 891 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 958 (1086)
Q Consensus 891 dg~~l~s~s~dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------d~~i~vwd~ 958 (1086)
++++++.|+.++ .+..+|+.+.... ....+..+... .-...+..-++++.+.+. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 566777777643 4666777664421 11111111110 111222234566656542 245888998
Q ss_pred CCccceeccccCCccCEEEEEEeCCCCEEEEEECCCc----EEEEEcCCCcee
Q 001396 959 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 1007 (1086)
Q Consensus 959 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~----v~vWd~~~~~~~ 1007 (1086)
.+.+....-......+....+...++++.+.||.++. +.+||..+.+..
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 8765433211111122233334557788888887643 567887776553
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.36 E-value=7.7 Score=48.09 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=101.1
Q ss_pred ccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 312 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 312 ~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
.+..+|...+..+. |...=..+-+-|.=.+ |--+.|+.+.+|+.+++..... +.+-+.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh 120 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH 120 (1311)
T ss_pred ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence 34556766655555 4434444555554433 2335679999999999665543 334444
Q ss_pred cEEEEEE--------CCCCCEEEEEeCCCEEEEEEecCCCccccceEec------cccccEeEEEecCCCCcEEEEEEeC
Q 001396 392 SVNRVVW--------SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 392 ~V~~l~~--------spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
.|..|.. -|.=++|.....--.|.|+-+.-.+.......+. ...-.|.|+....+|+ .+. +|.
T Consensus 121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~ 197 (1311)
T KOG1900|consen 121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR 197 (1311)
T ss_pred hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence 5555443 3344555555555567777665433222111222 2245789999888888 555 455
Q ss_pred CCcEEEEeC----CCC---c-e----------------eEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 458 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 458 d~~i~iwd~----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
|| .+|.+ ..| + + +-.+. .+..+|..+.+. .....+.+-+..|+|.+||+..
T Consensus 198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 66 44432 211 1 1 11223 467789999884 3446899999999999999876
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.1 Score=56.26 Aligned_cols=242 Identities=17% Similarity=0.138 Sum_probs=136.2
Q ss_pred EEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEE
Q 001396 733 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 812 (1086)
Q Consensus 733 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 812 (1086)
...+.+.+..++.++.+..+..||-.... .... ........+++..++..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 44566777778888888777777632211 1111 1233445677777777766
Q ss_pred EEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeC
Q 001396 813 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890 (1086)
Q Consensus 813 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp 890 (1086)
... .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 58899999975432211111111122278999 899999999999999999988777766666999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC-C-CCceEEEEecCCCEEEEEeCCeEEEE-----EcCCccc
Q 001396 891 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL-A-PSETHIQFHKDQTRFLLVHETHLAIY-----EAEELTC 963 (1086)
Q Consensus 891 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~s~dg~~l~~~~d~~i~vw-----d~~~~~~ 963 (1086)
.+ +.+.++.|..+.+-...+..... ....+.... . .-+..=.|..-|..+...-.+.+.+. ..+....
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceeee----eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 86 55666667655443333211111 011111100 0 00111122333444443222221111 1111111
Q ss_pred eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 964 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 964 ~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
+ . +....+.+.++.|--||..+ -+..-|.|.+-.+.++++.+.|.
T Consensus 245 l-~-fq~~~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 245 L-Q-FQEKYGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred e-E-eeecCCceeEEEEecccccc-ccccceeEEEEeccchHHHHHHH
Confidence 1 1 22235677788888887544 36666777777788887776655
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=87.13 E-value=65 Score=37.29 Aligned_cols=154 Identities=10% Similarity=-0.037 Sum_probs=72.2
Q ss_pred EEEEEeCC-----CcEEEEeCCCCceeEEeecC--Ccce--EEEeecccCCccEEEEEEcCC-----eEEEEEcCCCcee
Q 001396 451 SVITCGDD-----KTIKVWDAVTGSRTYSFEGH--GAPV--YSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGAR 516 (1086)
Q Consensus 451 ~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h--~~~v--~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~ 516 (1086)
+++.|+.+ +.+.++|+.+.+-...-... ..+. .+++. . ++.+.+.|+.++ .+..||+.+.+=.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55556544 35888898776533211100 0111 11211 1 445666666543 3566776554321
Q ss_pred EEec---CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc-CCceEEEEEecCCCEEEEEEC
Q 001396 517 VDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 517 ~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
.... .........+..-+++..+.++.++.....+.+||+.+.+....-...... .....++ ..-+++.++.|+.
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~ 386 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGE 386 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCc
Confidence 1110 001111111222366777766654332356899999887664432210000 0111222 2234556666664
Q ss_pred C--------------CcEEEEEcCCCeeEE
Q 001396 593 D--------------HVIKIWDMNKVQLLT 608 (1086)
Q Consensus 593 d--------------g~i~iwd~~~~~~~~ 608 (1086)
. ..+.++|+.+.+-..
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEE
Confidence 2 247888988876543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.07 E-value=12 Score=38.24 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=84.3
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEecccccCCceEEEEEec
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
.+||+.+.+...........+.+-++-+||+++.+|+. .++...+++++..+ ..........-.....--+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888876655433334445555678899999998875 44677788888654 111111111011112334455668
Q ss_pred CCCEEEEEECCC-cEEEEEcCC-Ce-eEE--EEc---CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 583 AKDQILAAGDDH-VIKIWDMNK-VQ-LLT--TID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 583 ~~~~l~~~s~dg-~i~iwd~~~-~~-~~~--~~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
||+.++.|+... +..+|.... .. ... .+. .......-..+...|+|++++.+..+ -.|||..+++.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 999999887664 345555422 11 111 111 01111223467788999999888764 456788877665555
Q ss_pred cc
Q 001396 655 GV 656 (1086)
Q Consensus 655 ~~ 656 (1086)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 43
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.04 E-value=4.5 Score=40.83 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.9
Q ss_pred EEEecCCCEEEE-EeCCeEEEEEcCCccceecc------cc-------CCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 936 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 936 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+.+..++.+|++ +.+|.+++||+.+++++... +. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 446677888777 89999999999988776442 22 3467899999999998887765 688999998
Q ss_pred CCCceeeeec
Q 001396 1002 SNLEVQCRIL 1011 (1086)
Q Consensus 1002 ~~~~~~~~~~ 1011 (1086)
+-+..+.-..
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 8776664443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=86.83 E-value=96 Score=38.99 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=20.9
Q ss_pred hhhhhh-hhhhhcCCCCHHHHHHHHHhhcccc
Q 001396 68 FEIRKQ-NFFEALDGHDIAKALNILKKDLKDF 98 (1086)
Q Consensus 68 ~~i~~q-~~~Ell~~~~~~~A~~~l~~~l~~~ 98 (1086)
|.|-+| -+|+|.-.|...-.|+|+|.-+.|-
T Consensus 80 fTlTR~DG~FDL~vnGg~svtLqF~R~pF~~q 111 (1899)
T KOG4659|consen 80 FTLTREDGYFDLTVNGGRSVTLQFLRTPFQSQ 111 (1899)
T ss_pred EEEEecCceEEEEEcccceEEEEEccCCCccc
Confidence 444333 4788888888778888888665554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=86.74 E-value=54 Score=35.98 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=102.4
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec--ccCCccE--EEEEEc-C---CeEEEEEcCCCce-eEEecC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSISV-D---GKIKAWLYDSLGA-RVDYDA 521 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~--l~s~s~-d---g~i~vwd~~~~~~-~~~~~~ 521 (1086)
+++....++-+.+||+ .|+.++.+. .+.++.+.+. ..-+|+. |+.++. + .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777777888999995 566666664 2344444321 1112222 444442 2 5799998864322 222211
Q ss_pred -------CCCceEEEEEe--c-CCCEEEEEeeCCCCceeEEEEeC---CCC----eeeeEEecccccCCceEEEEEecCC
Q 001396 522 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 522 -------~~~~i~~~~~s--~-d~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
....++.+|+- + +|.+.+.... + ++.+..|.+ ..+ +.++.|... ..+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence 11246677763 3 4555554432 2 334544443 333 457777653 478899999999
Q ss_pred CEEEEEECCCcEEEEEcCC-----CeeEEEEcCCCCCCCCceEEEec--CCC-EEEE-EECCCcEEEEECCCC
Q 001396 585 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--NGT-LLAV-IANENRIKILETPES 648 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~~-~l~~-~~~dg~i~iw~~~~~ 648 (1086)
.+|+.+-++.-|.-|+.+. +..+.......-...+-.+++-. +++ +|++ .-.+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 22232322222234566677643 433 4444 444778999998753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.07 E-value=3.2 Score=41.96 Aligned_cols=75 Identities=8% Similarity=0.079 Sum_probs=52.7
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeee--eeeccCCCc----cCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCc
Q 001396 888 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR--SLQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 961 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~ 961 (1086)
+..++++|+..+.+|.+++||+.+.+..... ......... .....|..+.++.+|.-+++-.+|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999986643322 111121100 1224689999999999988877888999987644
Q ss_pred c
Q 001396 962 T 962 (1086)
Q Consensus 962 ~ 962 (1086)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=58 Score=38.55 Aligned_cols=190 Identities=9% Similarity=0.021 Sum_probs=101.2
Q ss_pred CeeEEEeecCCCEEEEEeC-C-eEEEEEccCceE----EEEEcCCCCCeEEEEEcCCCCCEEEEEeC--CC--eEEEEEc
Q 001396 798 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA 867 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~ 867 (1086)
.+..+++|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++. +-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~-vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGD-LWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCC-EEEecCCCCCceEEEEEcC
Confidence 6778999999999887763 3 466655533322 11111 123466677777 453 333322 22 2555543
Q ss_pred CCceeEE-EeccccC-CeEEEEEeCCCCEEEEEeC---CCcEEEEECCC---CceeeeeeeeccCCCccCCCCceEEEEe
Q 001396 868 RSSEVIS-KLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFH 939 (1086)
Q Consensus 868 ~~~~~~~-~l~~h~~-~v~~l~~spdg~~l~s~s~---dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s 939 (1086)
+|+... ......+ .|+.+..|+||-.++.... .++|.|=-+.. +............+. ..+.+++|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence 444321 1112333 7999999999988776543 35566555443 221111111111111 248899999
Q ss_pred cCCCEEEEE--eCCeEEEEE--cCCccceeccccCCccCEEEEEEeCCCC-EEEEEECCCcE
Q 001396 940 KDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 996 (1086)
Q Consensus 940 ~dg~~l~~~--~d~~i~vwd--~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~~Dg~v 996 (1086)
.++.+++.+ ..+...+|. +..... .....+.-..+..++-..+.+ .|+.+..++.|
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~-~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARYVQVDGSTP-PASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCCEEEEEeccCCCCcceEEEecCCcCc-ccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 999988854 333444444 442222 111122345677777776666 45543555554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.90 E-value=20 Score=39.54 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=87.6
Q ss_pred cCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC-------CCCEEEEEeCCCeEEEEEcCC-ceeEEE
Q 001396 806 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 875 (1086)
Q Consensus 806 ~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~ 875 (1086)
.|..++...+ ...+.-.|++.|+.+.....|... -+.|.|+ +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 256777889999999888877655 4566662 223444 55565565555442 322222
Q ss_pred eccccCCeEEEEEeC----CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCC
Q 001396 876 LEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 951 (1086)
Q Consensus 876 l~~h~~~v~~l~~sp----dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 951 (1086)
-. ....++.-.||. ...++|.+|..|.|++||--.-..++ .++. ....|-.+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP~------lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALPG------LGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCcc------cccceeeeEeecCCcEEEEeecc
Confidence 11 112222223332 34699999999999999976533222 1221 22368899999999999998888
Q ss_pred eEEEEEcC
Q 001396 952 HLAIYEAE 959 (1086)
Q Consensus 952 ~i~vwd~~ 959 (1086)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 88888875
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=85.51 E-value=60 Score=35.37 Aligned_cols=167 Identities=14% Similarity=0.133 Sum_probs=87.8
Q ss_pred ccEEEEEECCCCCEEEEEeCCCE------EEEEEecCCC-cc-----ccceEeccccc--------cEeEEEecCCCCcE
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHI------VQLYAYHGGS-DA-----RQQLEIDAHVG--------NVNDLAFSAPCKQI 450 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~------i~iwd~~~~~-~~-----~~~~~~~~h~~--------~v~~v~~s~d~~~l 450 (1086)
+..+.+.+.|++..+++.+++|. +...++.... .. .....+..-.+ ..-++++.++|.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-- 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence 67889999976666667777776 6666655411 11 11111111111 233677766666
Q ss_pred EEEEEeCC------CcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC
Q 001396 451 SVITCGDD------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 524 (1086)
Q Consensus 451 ~l~s~~~d------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 524 (1086)
++++.-.+ ..|+.++.. |+.+..+..... +.+..++. .-...+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~------~~~~~~~~-----------------------~~~~~N~ 147 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA------FLPDANGT-----------------------SGRRNNR 147 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccc------cccccCcc-----------------------ccccCCC
Confidence 56655555 566666644 555544421110 00000000 1122445
Q ss_pred ceEEEEEecCCCEEEEEeeCC---CCc---------eeEEEEeCCC-CeeeeEEecccc------cCCceEEEEEecCCC
Q 001396 525 GCTRMAYSANGRRLFSCGTSK---EGE---------SFLVEWNESE-GAIKRTYQGLQL------QHNSVSVVHFDTAKD 585 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~---~~~---------~~i~iwd~~~-~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 585 (1086)
...+++++|||+.|+++.... ++. ..|..+|..+ +.....+.-... ....+..+.+-++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 678899999999766655432 111 3455666655 333333322211 236788899999988
Q ss_pred EEEE
Q 001396 586 QILA 589 (1086)
Q Consensus 586 ~l~~ 589 (1086)
+++.
T Consensus 228 lLvL 231 (326)
T PF13449_consen 228 LLVL 231 (326)
T ss_pred EEEE
Confidence 6665
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=84.90 E-value=60 Score=34.86 Aligned_cols=239 Identities=15% Similarity=0.018 Sum_probs=117.0
Q ss_pred cCCCceEEEEEeccCcEEEEecCC--CceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-CCE
Q 001396 337 HPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHI 413 (1086)
Q Consensus 337 spdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~~ 413 (1086)
.-+++ .|+.|+.+|...+. +.. ++..+ -.+...|+++...+.-+.|++-++ ...
T Consensus 10 ~~~~~-~lL~GTe~Gly~~~-~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~ 66 (302)
T smart00036 10 TCDGK-WLLVGTEEGLYVLN-ISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQ 66 (302)
T ss_pred ccCCc-EEEEEeCCceEEEE-cccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcce
Confidence 33444 48888887755444 543 22222 124568999999998887777653 345
Q ss_pred EEEEEecCCCc-----------cccc-eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEe--
Q 001396 414 VQLYAYHGGSD-----------ARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSF-- 475 (1086)
Q Consensus 414 i~iwd~~~~~~-----------~~~~-~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~-- 475 (1086)
++++++..-.. .+.. ...-+|......++.. .++...++.+....+|.++.+... ...+.+
T Consensus 67 L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~ 145 (302)
T smart00036 67 LYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFL 145 (302)
T ss_pred EEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccc
Confidence 99999843221 0000 0111344433334444 233324444555667777644322 111211
Q ss_pred -e-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC--Cc--ee---EEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 476 -E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LG--AR---VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 476 -~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~--~~--~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
. ....++..+..+.......+..|+..+...++++.. .. .. ...........++..-+++.+|++-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~----- 220 (302)
T smart00036 146 FPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY----- 220 (302)
T ss_pred ccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE-----
Confidence 0 112233333333333345677776643334444432 10 00 0011111023333334556666554
Q ss_pred CceeEEEEeCCCCeeee--EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 547 GESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
+......|....+..+ .+. .. ....++++. ..++++-+. ..|.|+++.+++.++.+..
T Consensus 221 -~~~~v~Vn~~G~~~~r~~~l~-w~---~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 221 -DEFGVFVNLYGKRRSRNPILH-WE---FMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred -CcEEEEEeCCCCccccceEEE-cC---CcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 2234444544212211 121 12 345666666 367777665 4599999999999888864
|
Unpublished observations. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=84.90 E-value=70 Score=41.48 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=78.7
Q ss_pred EeCCCeEEEEEcCCcee-------EEEe---------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q 001396 856 GMDDSTILIYNARSSEV-------ISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 856 g~~dg~v~iwd~~~~~~-------~~~l---------~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 919 (1086)
|-.||.|.-||-.+..- +..| .-..+.|..+.+++...-++-+. +..+.+=-.. ........
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r-~~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRR-NKVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccccc-CCCCCCcc
Confidence 45689999999765211 1111 11345667777776554444322 2212110000 01111122
Q ss_pred eeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEE
Q 001396 920 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~v 998 (1086)
+..++ ...|+++|.-.+.++++....|.+.... +.+..+.--..+-.+.|..++......+.| -..+|.++-
T Consensus 697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 33333 1368999999999999988999999998 767755443445578999999988765555 456776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.52 E-value=69 Score=35.22 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCC-------EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC----cEEEEeCCCC
Q 001396 401 DGSLLGVAYSKH-------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIKVWDAVTG 469 (1086)
Q Consensus 401 dg~~las~~~d~-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~----~i~iwd~~~~ 469 (1086)
+++..+.|+.+. .+.+||+.+.+-......-..........+...-+..++++.|..+. .+.+||..+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Q ss_pred ceeEEeec-----CCcceEEEeecccCCccEEEEEEcC-----------CeEEEEEcCCCceeEEecCC---CCceEEEE
Q 001396 470 SRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD-----------GKIKAWLYDSLGARVDYDAP---GLGCTRMA 530 (1086)
Q Consensus 470 ~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d-----------g~i~vwd~~~~~~~~~~~~~---~~~i~~~~ 530 (1086)
+-...-.- ........+. ..++++++.|+.+ ..+.+||..+.+=...-... .......+
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~ 189 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMA--SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGF 189 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEE--EECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceE
Q ss_pred EecCCCEEEEEee---------CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC--------
Q 001396 531 YSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-------- 593 (1086)
Q Consensus 531 ~s~d~~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-------- 593 (1086)
..-+++..+.++. +......+.+||+.+.+....-.............+...++..++.|+..
T Consensus 190 ~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 190 AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred EEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccc
Q ss_pred ------CcEEEEEcCCCeeEEEE-----cCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 594 ------HVIKIWDMNKVQLLTTI-----DAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 594 ------g~i~iwd~~~~~~~~~~-----~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
..+..+|+.+.+-...- ...........+.+.-+++.++.|+.++.
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=84.08 E-value=22 Score=37.40 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=64.1
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE------cCCeEEEEEcCCCceeEEec----CCCCceEEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYD----APGLGCTRM 529 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~----~~~~~i~~~ 529 (1086)
.|++||..+.+-..--.+-.+.|+++.|. .+.++++.|. ....+..||+.+..-...-. .-.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 59999988777665555677889999985 3445666664 35568889887754322222 123577777
Q ss_pred EEec-CCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 530 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 530 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+.. |+..+..++....+...|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 7643 55445544443556778888886554433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.92 E-value=4.3 Score=47.75 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=78.1
Q ss_pred CceEeeecC-CCceEEEEEeccCcEEEEecCCCceee-ee--eee-eeeccccceeeeeeeecCCCccEEEEEEC--CCC
Q 001396 330 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLF-IR--NFK-VWDIGACSMLFKTALVRDPGVSVNRVVWS--PDG 402 (1086)
Q Consensus 330 ~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg 402 (1086)
.|+.+.... -++.+|+.+..||.|.+|.+++=.... .. ..+ ...-.. ..++ +...-...++.++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~-i~P~---f~~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLK-IKPF---FHLRVGASAWGLDIHDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhcccccccccccc-CCCC---eEeecCCceeEEEEEecCcc
Confidence 355554443 223478889999999999864210000 00 000 000000 0010 111234589999999 888
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCC----cEEEEEEeCCCcEEEEeC
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK----QISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~----~l~l~s~~~d~~i~iwd~ 466 (1086)
++||+++....|.||-......-.....-..|...|.+|+|-++.. ...+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999998888888887765321111111123667899999977651 136888899999998886
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=83.73 E-value=27 Score=31.51 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=64.0
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCe--------eeeEEecccccCCceEEEEEec-----CCCEEEEEECCCcE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGA--------IKRTYQGLQLQHNSVSVVHFDT-----AKDQILAAGDDHVI 596 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~s~dg~i 596 (1086)
.|......|++++. .+.|.+.+..... .++.+.- ...|++++-.+ +...|+.|+ ...+
T Consensus 5 kfDG~~pcL~~aT~----~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt-~t~l 75 (136)
T PF14781_consen 5 KFDGVHPCLACATT----GGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGT-QTSL 75 (136)
T ss_pred EeCCCceeEEEEec----CCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEec-cceE
Confidence 34444445665554 4567777765332 2333332 24667765544 234455555 5679
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEec---CCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
..||+.....+.....+.+ ++++.+.. ...-++..+.+..|.-+|....+.++..
T Consensus 76 laYDV~~N~d~Fyke~~DG---vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 76 LAYDVENNSDLFYKEVPDG---VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEcccCchhhhhhCccc---eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9999998877665555544 56666643 2233444445577888887766555543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.39 E-value=1e+02 Score=36.26 Aligned_cols=190 Identities=15% Similarity=0.067 Sum_probs=97.1
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcC-Ccee--
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV-- 872 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~-- 872 (1086)
.+..+++++++..+|...+..-.+|-...+.....+. ....++.-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 5778899999999888874333444333233332222 123466777877 55 444444333 44444322 2111
Q ss_pred ----EEEeccccC-CeEEEEEeCCCCEEEEE-eCCCc--EEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 ----ISKLEGHSK-RVTGLVFSDALNILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 ----~~~l~~h~~-~v~~l~~spdg~~l~s~-s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
........+ .|+.+..|+||-.++.. ..+|. |.|=-+..........+..+... .....+.+++|..++.+
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl 499 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTV 499 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEE
Confidence 111223444 49999999999877653 34554 66654433211111122111111 00136889999999998
Q ss_pred EEEE----eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCc
Q 001396 945 FLLV----HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 995 (1086)
Q Consensus 945 l~~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~ 995 (1086)
++.+ .+..+++..+..|..- . . .+-..+..|+-..+.+-|+.. .|+.
T Consensus 500 ~V~~~~~~~~~~~~~v~v~~g~~~-~-l-~~~~~~~~iaag~~~~~i~~~-sd~~ 550 (573)
T PRK13614 500 VVTKASATSNVVPELLSVDAGQPQ-Q-L-APWTGLTSITVGNGPEEVYGQ-SDGG 550 (573)
T ss_pred EEEeccCCCcceEEEEEeCCCCcc-c-C-CCcCCeEEEeecCCccceEEE-cCCC
Confidence 8773 2234667776444321 1 1 123345555544333333333 3444
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.98 E-value=0.63 Score=50.48 Aligned_cols=146 Identities=15% Similarity=0.216 Sum_probs=98.0
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~ 410 (1086)
-...|-|.+.. ++.++.+..+..||-....... ....+....++|..+|..++.. -.
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~agq~~le---------------------~n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAGQVILE---------------------LNPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhcceecc---------------------cCCchhHhhhhhccccchhhhhhhc
Confidence 34456777776 6777777888888854433221 1123455678888888776654 45
Q ss_pred CCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
.+.+.+||+.+..... .++.+ |.... +.|++-+. .++.+...+.+.|++..+.+.+-..-.|...++++++.+
T Consensus 96 ~~piylwd~n~eytqq--LE~gg~~s~sl--l~wsKg~~--el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQ--LESGGTSSKSL--LAWSKGTP--ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred CCCeeechhhhhhHHH--HhccCcchHHH--HhhccCCc--cccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 6789999998753221 12222 33222 78998888 678888899999999888777666655889999999865
Q ss_pred cCCccEEEEEEcCCeEEEE
Q 001396 490 KENIHFIFSISVDGKIKAW 508 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vw 508 (1086)
.+ +.+.++.|..+.+-
T Consensus 170 Ed---~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 170 ED---YVILCDCDNTLSVT 185 (615)
T ss_pred cc---eeeecCcHHHHHHh
Confidence 32 67777777665544
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=82.74 E-value=81 Score=34.72 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeC
Q 001396 503 GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
..+.+||..+.+=...-.... ......+...+++..+.++..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457777766543222111111 111222234567777777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1086 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 9e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 9e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 9e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 9e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 8e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 8e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 7e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1086 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.78 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.66 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.64 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.6 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.6 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.58 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.57 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.52 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.52 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.52 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.48 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.48 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.44 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.37 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.35 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.33 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.33 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.32 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.3 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.3 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.27 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.22 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.21 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.2 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.18 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.18 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.15 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.13 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.11 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.1 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.03 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.01 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.99 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.96 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.95 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.94 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.92 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.9 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.9 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.88 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.87 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.77 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.76 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.76 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.74 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.73 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.72 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.71 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.65 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.61 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.57 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.56 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.52 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.5 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.5 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.49 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.44 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.43 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.43 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.42 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.41 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.4 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.4 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.39 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.38 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.38 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.36 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.36 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.36 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.35 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.33 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.31 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.17 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.14 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.11 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.03 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.03 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.01 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.98 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.92 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.87 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.85 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.79 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.78 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.76 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.7 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.68 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.64 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.63 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.6 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.57 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.52 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.37 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.36 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.34 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.25 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.16 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.08 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.07 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.05 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.0 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.9 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.81 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.71 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.71 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.65 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.58 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.57 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.47 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.47 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.39 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.37 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.18 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.15 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.12 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.06 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.0 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.84 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.62 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.6 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.53 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.37 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 95.31 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.15 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.97 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.88 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 94.88 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.17 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.07 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 91.96 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.88 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.77 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 90.99 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 90.84 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.78 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 90.57 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 89.6 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.64 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 88.11 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 80.54 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-68 Score=645.35 Aligned_cols=568 Identities=22% Similarity=0.344 Sum_probs=484.5
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+.|+||++.|+|++|||||++ ||+|+.|++|+|||. +++++.. +.+|...|.+++||
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fs 66 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFS 66 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEEC
T ss_pred EeeEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEEC
Confidence 34669999999999999999995 999999999999995 6776654 77999999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
|||++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+||++ +|++++.|+.+++|+.. +.......+|.
T Consensus 67 pdg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~ 139 (577)
T 2ymu_A 67 PDGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHS 139 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCC
Confidence 999999999999999999964 44333 6889999999999999999 89999999999999954 55567778899
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..+..+.+.+ ++..+++++.++.+++|+... ........+...+.+++++|+++++++++. ++.|++||. ++
T Consensus 140 ~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~ 211 (577)
T 2ymu_A 140 SSVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NG 211 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TS
T ss_pred Cceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CC
Confidence 9999999854 667899999999999998543 455566778889999999999999999986 778999995 57
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
+.+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.
T Consensus 212 ~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~ 285 (577)
T 2ymu_A 212 QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKT 285 (577)
T ss_dssp CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCE
Confidence 7888888887 89999999999999999999999999996 56677777655 346899999999999999999999
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
|++|+... +....+.
T Consensus 286 i~~w~~~~-~~~~~~~---------------------------------------------------------------- 300 (577)
T 2ymu_A 286 VKLWNRNG-QLLQTLT---------------------------------------------------------------- 300 (577)
T ss_dssp EEEEETTS-CEEEEEC----------------------------------------------------------------
T ss_pred EEEEeCCC-cEEEEEe----------------------------------------------------------------
Confidence 99999643 2222222
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
+|...|.+++|+|+++.+++++.||.+++|+..... +... . +|...+
T Consensus 301 ------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~~--~--~~~~~v 347 (577)
T 2ymu_A 301 ------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQTL--T--GHSSSV 347 (577)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEEE--C--CCSSCE
T ss_pred ------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------eEEE--e--CCCCCE
Confidence 255678888899999999999999999999864321 1111 1 378899
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001396 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 878 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 878 (1086)
.+++|+|+++++++++ ++.|++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 9999999999999998 699999995 5788889999999999999999 8999999999999999996 5788899999
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEE
Q 001396 879 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 957 (1086)
Q Consensus 879 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd 957 (1086)
|...|++++|+||+++|++++.|++|++||.... .+....+|.. .|.+++|+|||++|++ +.|+.|++||
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~ 495 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWN 495 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence 9999999999999999999999999999997642 2333444443 7999999999999999 6789999999
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1037 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1086)
. +++++.. +.+|...|++++|+|||++|++++.||.|++||+ +++.+..+.. |... +.+++|+| |+
T Consensus 496 ~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~--------h~~~--v~~~~fs~-dg 561 (577)
T 2ymu_A 496 R-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--------HSSS--VWGVAFSP-DG 561 (577)
T ss_dssp T-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--------CSSC--EEEEEECT-TS
T ss_pred C-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC--------CCCC--EEEEEEcC-CC
Confidence 5 5777765 5689999999999999999999999999999996 5777766651 2333 45899999 78
Q ss_pred CEEEEEeCCCcEEEEc
Q 001396 1038 TQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 1038 ~~l~~~~~dg~v~vw~ 1053 (1086)
++|++++.||+|++||
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-67 Score=631.86 Aligned_cols=577 Identities=15% Similarity=0.182 Sum_probs=478.1
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
..+++.+.+++|||||++ ||+++ ++.|+|||+.+++.... +.+|...|++++|||||++
T Consensus 15 ~~~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~ 73 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYY 73 (611)
T ss_dssp CCCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred CcccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcE
Confidence 355778999999999985 78887 57999999998877654 7899999999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEeecCCc
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|||+ .|++++.+ +.|++|| +++.+..+.+|..
T Consensus 74 lasg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~ 148 (611)
T 1nr0_A 74 CASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQAR 148 (611)
T ss_dssp EEEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSS
T ss_pred EEEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCC
Confidence 9999999999999997665432 235779999999999999999 67777754 3677776 6778888999999
Q ss_pred ceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 481 PVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.|++++|+| ++. .|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++. |+.|++||..++
T Consensus 149 ~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g 222 (611)
T 1nr0_A 149 AMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDG 222 (611)
T ss_dssp CEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTC
T ss_pred CceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCC
Confidence 999999976 444 6999999999999999988888899999999999999999999999986 778999999999
Q ss_pred eeeeEEe-------cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCC-CCCceEEEecCCCEE
Q 001396 560 AIKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLL 631 (1086)
Q Consensus 560 ~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l 631 (1086)
+.+..+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+
T Consensus 223 ~~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 297 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQAL 297 (611)
T ss_dssp CEEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCE
T ss_pred cEeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEE
Confidence 9888874 455 89999999999999999999999999999999999888654221 12334444 78899
Q ss_pred EEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 632 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
++++.|+.+++|+...+.....+.+|...|.+++|+ |+|+++++++.|++|++||+..
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999988888889999999999996 7899999999999999999864
Q ss_pred cCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCC
Q 001396 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791 (1086)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 791 (1086)
.... ......|...|.+++|++++ .+++++.|+.+++|+......... . .....
T Consensus 356 ~~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~-- 409 (611)
T 1nr0_A 356 GISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK-- 409 (611)
T ss_dssp CCEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE--
T ss_pred Ccee-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee--
Confidence 3221 11123588899999999876 588999999999998765321100 0 00001
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.+++
T Consensus 410 ---~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 410 ---LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp ---CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE
T ss_pred ---cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCc
Confidence 23346789999999988888889999998 344 45554 778899999999 89999999999999999998765
Q ss_pred e--EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-
Q 001396 872 V--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 947 (1086)
Q Consensus 872 ~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 947 (1086)
. +.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|. ..|.+++|||||++||+
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATG 554 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEE
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEE
Confidence 4 334 67999999999999999999999999999999986 33211 00122344 38999999999999999
Q ss_pred EeCCeEEEEEcCCcccee-ccccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 948 VHETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 948 ~~d~~i~vwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
+.|++|++|++.++.... ....+| ...|.+++|+||++ |++++.|++|++|+++
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 689999999999876433 446789 89999999999998 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-63 Score=598.41 Aligned_cols=555 Identities=22% Similarity=0.343 Sum_probs=468.9
Q ss_pred CCCCCCCCccccccccccCCCccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeee
Q 001396 291 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 370 (1086)
Q Consensus 291 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~ 370 (1086)
+..|||....+..-.. .....+.+...+++++|.+|++.|++++|||||+ +||+|+.|++|+|||. +++.+..
T Consensus 21 ~~a~spdg~~las~~~-d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~---- 93 (577)
T 2ymu_A 21 GVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT---- 93 (577)
T ss_dssp EEEECTTSSCEEEEET-TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE----
T ss_pred EEEECCCCCEEEEEeC-CCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE----
Confidence 5678887665433211 1222333456688999999999999999999998 5899999999999996 5665544
Q ss_pred eeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcE
Q 001396 371 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 450 (1086)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l 450 (1086)
+.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+|++.
T Consensus 94 ---------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-- 152 (577)
T 2ymu_A 94 ---------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ-- 152 (577)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--
T ss_pred ---------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--
Confidence 77899999999999999999999999999999976543 224678999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
.+++++.++.+++|+. .+........|...|.++++.+ ++.+|++++.||.|++||. +.+....+..+...+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 153 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEE
Confidence 7899999999999994 5566777788999999999854 6789999999999999995 4566777888999999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 610 (1086)
|+|++++|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++||. +++.+..+
T Consensus 229 ~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~ 299 (577)
T 2ymu_A 229 FSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL 299 (577)
T ss_dssp ECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred ECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEE
Confidence 9999999999886 677999995 567788888877 89999999999999999999999999996 45667777
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCC
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 690 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~ 690 (1086)
..+ ...|.+++|+|+++++++++.|+.|++|+.... .+..+.
T Consensus 300 ~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~----------------------------------- 341 (577)
T 2ymu_A 300 TGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLT----------------------------------- 341 (577)
T ss_dssp CCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC-----------------------------------
T ss_pred ecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEe-----------------------------------
Confidence 655 446899999999999999999999999997643 121111
Q ss_pred CcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCccccc
Q 001396 691 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 770 (1086)
Q Consensus 691 d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 770 (1086)
+|...+.+++|+|+++.+++++.+|.+++|+....
T Consensus 342 -----------------------------------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------- 376 (577)
T 2ymu_A 342 -----------------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------- 376 (577)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------
Confidence 15567888999999999999999999999974321
Q ss_pred ccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCC
Q 001396 771 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 849 (1086)
Q Consensus 771 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 849 (1086)
.+.... +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 377 -------------~~~~~~----~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d 437 (577)
T 2ymu_A 377 -------------LLQTLT----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D 437 (577)
T ss_dssp -------------EEEEEE----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------EEEEec----CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-C
Confidence 122211 3788999999999999999998 799999995 5788889999999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccC
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 929 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 929 (1086)
+++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... + .++.+.+|..
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~- 509 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS- 509 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS-
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC-
Confidence 999999999999999996 4778889999999999999999999999999999999999654 2 3444555554
Q ss_pred CCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 930 APSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 930 ~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
.|++++|+|||++||+ +.|+.|++||. +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus 510 --~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 --SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 7999999999999998 67899999996 5777766 568999999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=665.83 Aligned_cols=619 Identities=14% Similarity=0.176 Sum_probs=515.3
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS 666 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence 3456789999999999999998 589999999999999999988765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++..++++|+.|+.|++||+.+++++..+.+|.
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~ 743 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence 999999999999999999999987665 67899999999999997655589999999999999999999999999999
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------------CCceEEEEEecCCCEEEEEeeCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+.|++++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++
T Consensus 744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---- 817 (1249)
T 3sfz_A 744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---- 817 (1249)
T ss_dssp SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence 9999999965 6779999999999999999988766554322 23678899999999999987
Q ss_pred CceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 547 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.+.+||..++..+..+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..|. ..|.+++|+
T Consensus 818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s 891 (1249)
T 3sfz_A 818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS 891 (1249)
T ss_dssp -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence 5579999999998888776 444 899999999999999999999999999999999999888664 469999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
|+++++++++.||.|++|++.+......... .......+ .+++..++.......+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence 9999999999999999999764322111110 00111111 13344445555555555
Q ss_pred eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCce
Q 001396 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 785 (1086)
Q Consensus 706 vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 785 (1086)
++....... . ..+...+.+++++|+++.+++++.+|.+++|++.... ..
T Consensus 948 ~~~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~ 996 (1249)
T 3sfz_A 948 LIAGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF 996 (1249)
T ss_dssp EEEESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred EEecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence 555332111 0 1134679999999999999999999999999875432 12
Q ss_pred eeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 786 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 786 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
... . +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++++.||.|++
T Consensus 997 ~~~--~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 997 SSG--V--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp EEC--C--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred eec--c--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence 221 1 4888999999999999999998 7999999999988764 557899999999999 66 5678999999999
Q ss_pred EEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 865 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 865 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++ .+....+|.. .|.+++|+|||++
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence 9999999999999999999999999999999999999999999998855 3445556554 7999999999999
Q ss_pred EEE-EeCCeEEEEEcCCccceecc--------ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccc
Q 001396 945 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1015 (1086)
Q Consensus 945 l~~-~~d~~i~vwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~ 1015 (1086)
|++ +.||.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+..
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~--- 1216 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT--- 1216 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC---
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec---
Confidence 999 57899999999999887764 256899999999999999999885 8999999999988766541
Q ss_pred cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 1016 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
+.. ...+++|+| |+.+|++++.||.|++|++.+
T Consensus 1217 -----~~~--~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1217 -----NGT--NLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp -----SSC--CCCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred -----cCC--cccEEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 122 234688999 789999999999999999853
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-64 Score=603.29 Aligned_cols=573 Identities=11% Similarity=0.108 Sum_probs=456.8
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
..+.+.+.+++|+|||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 88 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence 34577889999999999999997 4699999998876554 6889999999999999999 8999999999999999
Q ss_pred CCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCC-EEE
Q 001396 467 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF 539 (1086)
Q Consensus 467 ~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~ 539 (1086)
.+++ ....+.+|.++|.+++|+| ++++|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 7654 4567889999999999955 77899988865 3677776 4556667788999999999999987 588
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----C
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G 614 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~ 614 (1086)
+++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+... +
T Consensus 165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~ 237 (611)
T 1nr0_A 165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237 (611)
T ss_dssp EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence 8876 7789999999999999999888 89999999999999999999999999999999988887421 3
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccc---cceeeeEEccCCCceeccccCCeeeecCCCCCC
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 691 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d 691 (1086)
+...|.+++|+|++++|++++.|++|++||+.+++.+..+..+. .....+. .+
T Consensus 238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 293 (611)
T 1nr0_A 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT 293 (611)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence 44579999999999999999999999999999887776654321 1111111 24
Q ss_pred cccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccc
Q 001396 692 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 771 (1086)
Q Consensus 692 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 771 (1086)
++.+++++.|+.+++|+...... .....+|...|.+++|+|+|+.+++++.|+.|++|++....
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~------~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~---------- 357 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSI------DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI---------- 357 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------
T ss_pred CCEEEEEeCCCcEEEEeCCCCCc------ceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc----------
Confidence 77899999999999999653221 11123588999999999999999999999999999875432
Q ss_pred cCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEE---EcCCCCCeEEEEEcCC
Q 001396 772 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH 848 (1086)
Q Consensus 772 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~ 848 (1086)
+.... ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+|
T Consensus 358 ------------~~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 421 (611)
T 1nr0_A 358 ------------SNRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA- 421 (611)
T ss_dssp ------------EEECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred ------------eeeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence 11111 11488899999999888655555589999999876532110 001234567899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCcc
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 928 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 928 (1086)
+++++++++ ++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... +.. .+|.
T Consensus 422 dg~~~~~~~-~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~- 491 (611)
T 1nr0_A 422 DGDIAVAAC-YKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP- 491 (611)
T ss_dssp TSSCEEEEE-SSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS-
T ss_pred CCcEEEEEe-CceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC-
Confidence 787777664 67899998 344 55555 88899999999999999999999999999998754321 222 2333
Q ss_pred CCCCceEEEEecCCCEEEE-EeCCeEEEEEcCC-ccceec-cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 929 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 929 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
..|.+++|||||++|++ +.|++|++|++.+ ++.... ...+|...|.+++|||||++|++++.|++|++||+.++.
T Consensus 492 --~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 492 --AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred --CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 37999999999999999 6889999999987 665544 344599999999999999999999999999999999875
Q ss_pred eee-eeccccccCCCCc-cCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1006 VQC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1006 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
... ... .+ | .. ...+++|+| ++. |++++.||+|++|+++
T Consensus 570 ~~~~~~~------~~-h~~~--~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHPIIIK------GA-HAMS--SVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCCEEET------TS-STTS--CEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred cccchhh------cc-Cccc--CeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 321 111 01 2 22 345899999 566 9999999999999983
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-61 Score=583.39 Aligned_cols=559 Identities=11% Similarity=0.156 Sum_probs=485.5
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC----ceeeeeeeeeeeccccceeeeeeeecCCCcc-EEEEEEC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS 399 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s 399 (1086)
..|.+.|.+++|||||++ ||+++ ++.|+|||+.++ +.... +.+|... |.+++|+
T Consensus 15 ~~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s 73 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS 73 (615)
T ss_dssp CCCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred CCccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence 468889999999999995 77777 789999999988 65544 7889999 9999999
Q ss_pred C--CCCEEEEEeCCCEEEEEEecCCC-----ccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCC
Q 001396 400 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT 468 (1086)
Q Consensus 400 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~ 468 (1086)
| |+++||+|+.||.|+|||+.+++ .......+..|...|.+++|+|+++ ++++++.+ +.|++|| +
T Consensus 74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence 9 99999999999999999997651 1122336778999999999999999 78888877 6888887 7
Q ss_pred CceeEEeecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCceeEEecCCCC---ceEEEEEecC-CCEEEEEee
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT 543 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-~~~l~~~~~ 543 (1086)
++.+..+.+|...|.+++|++ ++. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 788999999999999999965 444 899999999999999999999999998888 9999999999 999999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEE-e---cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC--CC
Q 001396 544 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP 617 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~ 617 (1086)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ..
T Consensus 228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 678999999999999888 5 555 899999999 999999999999999999999999988876521 12
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+.++.|+ +++++++++.|+.|++|++.+++.+..+.+|...|.++++ |. +++
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~ 352 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS 352 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence 45677775 8999999999999999999999899999999999998887 51 788
Q ss_pred ccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCcee
Q 001396 698 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 777 (1086)
Q Consensus 698 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 777 (1086)
++.|+.+++|++. .+. ..|...|.+++| +++..+++++.||.+++|++....
T Consensus 353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~---------------- 404 (615)
T 1pgu_A 353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE---------------- 404 (615)
T ss_dssp EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence 9999999999976 111 458899999999 667889999999999999865432
Q ss_pred cCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe
Q 001396 778 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 857 (1086)
Q Consensus 778 ~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 857 (1086)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++
T Consensus 405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~ 463 (615)
T 1pgu_A 405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL 463 (615)
T ss_dssp -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence 1125778999999999999888999999999999988887 88899999998 67999999
Q ss_pred C-CCeEEEEEcCCceeE-EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCC-CccCCCCce
Q 001396 858 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET 934 (1086)
Q Consensus 858 ~-dg~v~iwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~ 934 (1086)
. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++ .+....+ |.. .|.
T Consensus 464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~ 535 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN 535 (615)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence 9 999999999988766 7788899999999999999999999999999999999865 3344444 443 799
Q ss_pred EEEEec----------CCCEEEE-EeCCeEEEEEcCCc-cceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 935 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 935 ~~~~s~----------dg~~l~~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
+++|+| ++++|++ +.|+.|++||+.++ +++.. +.+|...|++++|+|||+ |++++.||+|++|++.
T Consensus 536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999 9999999 57899999999998 55554 678999999999999999 9999999999999987
Q ss_pred CC
Q 001396 1003 NL 1004 (1086)
Q Consensus 1003 ~~ 1004 (1086)
.+
T Consensus 614 ~~ 615 (615)
T 1pgu_A 614 LE 615 (615)
T ss_dssp --
T ss_pred cC
Confidence 53
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=572.26 Aligned_cols=621 Identities=11% Similarity=0.089 Sum_probs=461.5
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
...+|.+.|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+| |
T Consensus 12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g 69 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-G 69 (902)
T ss_dssp EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-T
T ss_pred cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-C
Confidence 3469999999999999998 69999999999999998776543 224788999999999 8
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----------
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------- 472 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~---------- 472 (1086)
++||+++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 899999999999999999987665 343 678999999999999 8999999999999999988764
Q ss_pred -EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------------------CCceEEEEEec
Q 001396 473 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA 533 (1086)
Q Consensus 473 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s~ 533 (1086)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 234679999999999764 34689999999999 9999998887777655 35799999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeE--Ee---ccc----------ccCCceEEEEEec----CC-CEEEEEECC
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFDT----AK-DQILAAGDD 593 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~~----~~-~~l~~~s~d 593 (1086)
+|++|++++. |+.|++||+++++.+.. +. .|. .+...|.+++|++ ++ ..+++|+.+
T Consensus 222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999986 77899999999887654 21 121 1235799999964 43 456667665
Q ss_pred -----CcEEEEEcC------------------CCeeEEEEcCCCCCCCCceEEEec----------CCCEEEEEECCCcE
Q 001396 594 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI 640 (1086)
Q Consensus 594 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i 640 (1086)
+.+.+|++. +++....+... ....+..+.+.+ ++..+++++.|+.|
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 378999852 22334444321 123467777755 34578999999999
Q ss_pred EEEECCCCCeee-------eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 641 KILETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 641 ~iw~~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
++|++.++.... .+..|...|+++++++. ..++|+.....
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~ 423 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA 423 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhc
Confidence 999998774432 23455566777666521 12334422111
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 793 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 793 (1086)
.... ..+..+|...+.+++|+|+++.+++++.||+|++||+....... ...+... ... ....
T Consensus 424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~-----l~~-~~~~ 485 (902)
T 2oaj_A 424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN-----LSR-TLNK 485 (902)
T ss_dssp TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE-----HHH-HTTC
T ss_pred ccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee-----chh-hcCC
Confidence 0000 11224577778889999999999999999999999987653210 0000000 000 0011
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCc---------------------------------------------
Q 001396 794 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF--------------------------------------------- 827 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~--------------------------------------------- 827 (1086)
+|...|.+++|+|||++||+++ ||+|+||++.++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 4888999999999999999998 799999999866
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-----Eec-cccCCeEEEEEe-----CCC---C
Q 001396 828 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---N 893 (1086)
Q Consensus 828 ~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~v~~l~~s-----pdg---~ 893 (1086)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++|+|| ||| +
T Consensus 566 ~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 34678889999999999999 88 99999999999999999877653 343 899999999999 886 8
Q ss_pred EEEEEeCCCcEEEEEC---CCCceeeeeeeeccCCCccC--CCCceEEE-Ee----------------------cCCCEE
Q 001396 894 ILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMTL--APSETHIQ-FH----------------------KDQTRF 945 (1086)
Q Consensus 894 ~l~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-~s----------------------~dg~~l 945 (1086)
+|++++.|++|++||+ .+++.. ..+.++... .++|..++ |+ ++|..|
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred EEEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence 9999999999999999 554422 222222211 13566666 66 455544
Q ss_pred EEEeCCeEEEEEcCCccceeccccCCccCEEEE---E------EeCCCCEEEEEECCCcEEEEEcCCCceeeeecccccc
Q 001396 946 LLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1016 (1086)
Q Consensus 946 ~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~ 1016 (1086)
++ .+..++||++.++++.+.. .+|...+.++ . |+++|..|++++.||+|++|++++++.+..+......
T Consensus 719 ~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~ 796 (902)
T 2oaj_A 719 IT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPI 796 (902)
T ss_dssp EE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCC
T ss_pred EE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccc
Confidence 44 4889999999999998876 4566677776 5 7899999999999999999999999999888732211
Q ss_pred CCCCccCcccceEEEECCCCCCEEEEEeC
Q 001396 1017 RPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1045 (1086)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 1045 (1086)
. .-+....+|.+ +|+.|.-.+.
T Consensus 797 ~------~~~~~~~~~~~-~G~~~~~~~~ 818 (902)
T 2oaj_A 797 A------AKYITESSVLR-NGDIAIRVSE 818 (902)
T ss_dssp C------HHHHTTCEECT-TSCEEEECSS
T ss_pred c------cccccceEEcC-CCCEEEEeCh
Confidence 1 11122345666 5675554433
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=609.19 Aligned_cols=588 Identities=16% Similarity=0.190 Sum_probs=498.2
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+.+|.+.|.+++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+|+ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 377999999999999999999999999999999999987655 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999988778889999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccc----------ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++.|++||+.+++....+.... .....+.+++|+|+++.+++++ ++.+.+||+.++.....+...
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~- 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG- 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence 7789999999998877665321 1123688999999999999987 689999999999988877532
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
+...+.+++|+|+++++++++.||.|++|++.++..+..+.+|...|.+++|+ |+++.
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~ 896 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS 896 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCE
Confidence 23568999999999999999999999999999999999999999999999996 77889
Q ss_pred ceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCC
Q 001396 695 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 774 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 774 (1086)
+++++.|+.+++|+.......... .......+.+.+++..+++....+.+.++....
T Consensus 897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 953 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT--------------- 953 (1249)
T ss_dssp EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESS---------------
T ss_pred EEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCc---------------
Confidence 999999999999997633221111 122334566777777777777776666665332
Q ss_pred ceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEE
Q 001396 775 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 853 (1086)
Q Consensus 775 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l 853 (1086)
+..... +...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|
T Consensus 954 -------~~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 1018 (1249)
T 3sfz_A 954 -------GQIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTL 1018 (1249)
T ss_dssp -------CCEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCE
T ss_pred -------ceEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEE
Confidence 111111 456799999999999999998 69999999999999999999999999999999 89999
Q ss_pred EEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCc
Q 001396 854 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 933 (1086)
Q Consensus 854 asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 933 (1086)
++++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++. ...+.+|.. .|
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~v 1088 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERDFTCHQG---TV 1088 (1249)
T ss_dssp EEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEEEECCSS---CC
T ss_pred EEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEEEcccCC---cE
Confidence 99999999999999998876 456799999999999976 678899999999999998663 233344443 79
Q ss_pred eEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 934 THIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 934 ~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
.+++|+|||+++++ +.|+.|++||+.+++++.. +.+|...|++++|||||++|++++.||+|++||+.+++.+..+.+
T Consensus 1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecc
Confidence 99999999999998 5889999999999998876 568999999999999999999999999999999999988866532
Q ss_pred ccccCC-CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 1013 TAYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 1013 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
...... ..|.. .+.+++|+| |+.+|++++ |.|++||+.....
T Consensus 1168 ~~~~~~~~~~~~--~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1168 ISVEEGTATHGG--WVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp CC-------CCS--CCCEEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred ccccccccccCc--eEEEEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 221111 11223 345899999 789998885 9999999976554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=552.85 Aligned_cols=555 Identities=11% Similarity=0.108 Sum_probs=468.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC----CccccceEecccccc-EeEEEecC--CCCcEEEEEEeCC
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 458 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~v~~s~--d~~~l~l~s~~~d 458 (1086)
...|.+.|.+++|||||++||+++ ++.|+|||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 5443 68899999 99999999 999 89999999
Q ss_pred CcEEEEeCCCC--------ceeEEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEEecCCCCce
Q 001396 459 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 526 (1086)
Q Consensus 459 ~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~i 526 (1086)
+.|++||+.++ +.+..+..|...|.+++|++ ++.+|++++.+ +.|++|| ..+....+..+...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 67788889999999999954 77899999988 6888886 667788888999999
Q ss_pred EEEEEecCCC-EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC---ceEEEEEecC-CCEEEEEECCCcEEEEEc
Q 001396 527 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 527 ~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~ 601 (1086)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 7888775 7789999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCeeEEEE-c---CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccc----cceeeeEEccCCCce
Q 001396 602 NKVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVT 673 (1086)
Q Consensus 602 ~~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~ 673 (1086)
.+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-------
T ss_pred CCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-------
Confidence 999999888 3 33 3468999999 99999999999999999999988877776653 33333333
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
+++.++++++.++.+++|++....... ...+|...|.+++| |+ +++++.||.++
T Consensus 307 ----------------~~~~~l~~~~~~g~i~~~d~~~~~~~~------~~~~~~~~v~~~~~-~~---l~~~~~dg~i~ 360 (615)
T 1pgu_A 307 ----------------TGNGRIISLSLDGTLNFYELGHDEVLK------TISGHNKGITALTV-NP---LISGSYDGRIM 360 (615)
T ss_dssp ----------------EETTEEEEEETTSCEEEEETTEEEEEE------EECCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred ----------------CCCCeEEEEECCCCEEEEECCCCcEEE------EEeCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence 368889999999999999976532211 11348889999999 88 89999999999
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 832 (1086)
+|++. ++. .+|...|.+++| +++..+++++ |+.+++|++.+++...
T Consensus 361 ~w~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~- 407 (615)
T 1pgu_A 361 EWSSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS- 407 (615)
T ss_dssp ETTTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-
T ss_pred EEEch-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-
Confidence 99854 011 148889999999 5566666666 8999999987654322
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG 911 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~ 911 (1086)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+
T Consensus 408 ------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~ 476 (615)
T 1pgu_A 408 ------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD 476 (615)
T ss_dssp ------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTE
T ss_pred ------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCC
Confidence 778999999 88888877 78999999999999988887 88999999999 899999999 99999999997
Q ss_pred CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeC--------
Q 001396 912 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-------- 982 (1086)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-------- 982 (1086)
++... ....++.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 477 ~~~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 477 LEVSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEEEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred ccccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence 54211 34444443 7999999999999999 57899999999999998875544999999999999
Q ss_pred --CCCEEEEEECCCcEEEEEcCCC-ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 983 --DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 983 --dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
|+++|++++.||+|++||+.++ +.+..+. .|. -.+.+++|+| ++. |++++.||.|++|++..
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~--~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHK--DGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--------SST--TCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCceechhhh--------cCc--cceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 5665544 122 2355889999 677 99999999999999853
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=554.02 Aligned_cols=594 Identities=9% Similarity=0.042 Sum_probs=436.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..+|...|.+++|+||+++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45899999999999999999999999999999988765432 235788999999999 77 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-----------EEecCCCCceEEEEEecC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 534 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 534 (1086)
+.+++++..+. |...|++++|++ ++.+|++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 778999999954 6789999999999999999887653 123557789999999996
Q ss_pred C-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc---------------cccCCceEEEEEecCCCEEEEEECCCcEEE
Q 001396 535 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 535 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 598 (1086)
+ ..+++++. ++.| +||+++++.+..+..+ ..|...|.+++|+|++++|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777664 6789 9999999999888766 122367999999999999999999999999
Q ss_pred EEcCCCeeEEEEcC-----CC-----------CCCCCceEEEec----CC-CEEEEEECC-----CcEEEEECCC-----
Q 001396 599 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 647 (1086)
Q Consensus 599 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~----- 647 (1086)
||+.+++++..... +. +...|.+++|++ ++ .++++|+.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888531
Q ss_pred -------------CCeeeecc-ccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 648 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 648 -------------~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
......+. .+...+..+.+.+..... +.+ ..++..+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~----------~~g--~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY----------FAG--CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH----------HHH--TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC----------cCC--CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11122221 233445555444311000 000 1345577888889999999974221
Q ss_pred Cccc-cccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCC
Q 001396 714 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792 (1086)
Q Consensus 714 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 792 (1086)
.... .........|...|+++++++... .+|+..... . +... ..+
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l-- 431 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLL-- 431 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSC--
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Ccc--
Confidence 1100 000111123557788888865332 234321100 0 0000 012
Q ss_pred CCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEE----EE--Ec-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001396 793 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 860 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~lasg~~dg 860 (1086)
.+|...+..++|+||++++++++ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|+.||
T Consensus 432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 24777788899999999999998 899999999876421 11 11 7888999999999 999999999999
Q ss_pred eEEEEEcCCc---------------------------------------------eeEEEeccccCCeEEEEEeCCCCEE
Q 001396 861 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL 895 (1086)
Q Consensus 861 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~v~~l~~spdg~~l 895 (1086)
+|+|||+.++ +++..+.+|.+.|++|+||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 9999999876 2467888999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCceeeeeeeeccC-CCccCCCCceEEEEe-----cCC---CEEEE-EeCCeEEEEEc---CCcc
Q 001396 896 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 962 (1086)
Q Consensus 896 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~l~~-~~d~~i~vwd~---~~~~ 962 (1086)
|+|+.|++|+|||+.+........+..+. +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999876533211223343 5554 89999999 886 78888 68899999999 7888
Q ss_pred ceeccccCC-----ccCEEEEE-Ee----------------------CCCCEEEEEECCCcEEEEEcCCCceeeeecccc
Q 001396 963 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1014 (1086)
Q Consensus 963 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~ 1014 (1086)
+...+ .+| .++|.+++ |+ ++|..|+++ +..|+||++.+++.......
T Consensus 667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 77663 344 47787777 76 455555544 77899999999988766531
Q ss_pred ccCCCCccCcccceEE---E------ECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 1015 YLRPTTSCLHVYPHAI---A------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 1015 ~~~~~~~~~~~~~~~~---~------~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
......++ . |++ ++..|++++.||+|++|+++.-+.
T Consensus 742 --------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 742 --------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp --------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred --------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 11222233 4 667 688999999999999999977664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=486.20 Aligned_cols=559 Identities=14% Similarity=0.175 Sum_probs=430.1
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...++|.+|++.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence 35678899999999999999998 589999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 477 (1086)
+|+|++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++||+.++ .....+.+
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999999999987655 6778999999999999999 8999999999999999987 66788899
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEec--CCCEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 554 (1086)
|...|.+++|+|. ++..|++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++|
T Consensus 139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~ 213 (814)
T 3mkq_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (814)
T ss_dssp CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 9999999999652 56799999999999999999888777766555 7899999999 9999999876 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 632 (1086)
|..+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence 999999999998887 899999999999999999999999999999999999887664 4689999999987 455
Q ss_pred EEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc-------
Q 001396 633 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE------- 705 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~------- 705 (1086)
++ .++.+.+|++...... +.+ +|+++.+++++.+....
T Consensus 289 ~~-~~~~~~~~~~~~~~~~------------~~~----------------------~~~g~~~~~~~~~~~~~~~~~~~~ 333 (814)
T 3mkq_A 289 SG-FDNGFTVLSLGNDEPT------------LSL----------------------DPVGKLVWSGGKNAAASDIFTAVI 333 (814)
T ss_dssp EE-ETTEEEEEECSCCSCC------------EEE----------------------CSSSEEEEECCTTSCTTCEEEEEC
T ss_pred EE-eCCCEEEEEcCCCCce------------eEE----------------------CCCCCEEEECcccccceeeeeeec
Confidence 55 4667889987755332 222 24555555544433211
Q ss_pred --eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCC
Q 001396 706 --VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 783 (1086)
Q Consensus 706 --vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 783 (1086)
.|+.............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 334 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~--------------------- 389 (814)
T 3mkq_A 334 RGNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN--------------------- 389 (814)
T ss_dssp CSCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE---------------------
T ss_pred ccccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc---------------------
Confidence 12222111111111111 22456788999999999888887 89999998542110
Q ss_pred ceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCC---CEEEEEeCC
Q 001396 784 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDD 859 (1086)
Q Consensus 784 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~d 859 (1086)
.+...+.+++|+||++++++++ +|.|++|+. +.+|...+.+++|+| ++ .+|++++.|
T Consensus 390 ----------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d 450 (814)
T 3mkq_A 390 ----------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSD 450 (814)
T ss_dssp ----------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEET
T ss_pred ----------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecC
Confidence 1345678999999999999997 699999963 344777889999999 77 578888999
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEE------eCCCcEEEEECCC---------------Cceeeee
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCR 918 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~------s~dg~i~iwd~~~---------------~~~~~~~ 918 (1086)
+.|++||+.+++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +......
T Consensus 451 ~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (814)
T 3mkq_A 451 GFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFD 527 (814)
T ss_dssp TEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEE
T ss_pred CEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhhee
Confidence 9999999999999999998875 89999999999999 6666555553210 0000011
Q ss_pred eeeccCCCccCCCCceEEEEecCCCEEEEEe-CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEE
Q 001396 919 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 997 (1086)
Q Consensus 919 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~ 997 (1086)
.+... ...+.+..|. +..++... .+.+..+. .++... .......+..+.|.+++..++....++.+.
T Consensus 528 ~~~~~------~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 595 (814)
T 3mkq_A 528 VLYEL------SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVY 595 (814)
T ss_dssp EEEEE------CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEE
T ss_pred eeeEe------ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEE
Confidence 11111 1235566664 34444433 34444432 222111 112345666777889999999999999999
Q ss_pred EEEcCCCc
Q 001396 998 IHEASNLE 1005 (1086)
Q Consensus 998 vWd~~~~~ 1005 (1086)
+|+++...
T Consensus 596 ~~~l~~~~ 603 (814)
T 3mkq_A 596 GYEISLEV 603 (814)
T ss_dssp EEECCHHH
T ss_pred EEEECcHH
Confidence 99987543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=472.84 Aligned_cols=570 Identities=14% Similarity=0.153 Sum_probs=427.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|||||++||+++.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++++.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987655 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
+.+++.+..+.+|.+.|++++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999965 6779999999999999999987 55667888999999999999 8889999886
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec--CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 7789999999888887777654 47899999999 99999999999999999999999999888664 46899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc-eeccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA 700 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~ 700 (1086)
++|+|+++++++++.||.|++||..+++....+..+...+.+++++ |++..+ ++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999997 455533 56666
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecccee-EEeeccCCccccCcccccccCCceecC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
++.+.+|++.. ....+.++|+|+.+++++.+... .++... ....|+.
T Consensus 292 ~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEEV 339 (814)
T ss_dssp TTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCCC
T ss_pred CCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------ccccccc
Confidence 77788887542 12346788999988877665321 111000 0011222
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 780 ~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
..+............+...+.+++|+|+|++++++++|.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 2222111111111135667899999999999999999999999987665433 34677999999 89999999999
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCC---CEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEE
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 936 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 936 (1086)
|.|++|+ .+.+|...+.+++|+||| ++|++++.|+.|++||+.+++ .+.....+. ..+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence 9999995 345688889999999998 689999999999999999865 333343332 289
Q ss_pred EEecCCCEEEEE------eCCeEEEEEcCCccceecccc-------CCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 937 QFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 937 ~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~-------~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
+|||||++|+++ .++.+.+|....+.....+.. +.......+. +- +..+.++..++.+.+|....
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~s~~w~~~~~i~~t~~ 552 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY-EL-SESITSGKWVGDVFIFTTAT 552 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE-EE-CSCCSEEEEETTEEEEECTT
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee-Ee-ccEEEeeEEeCCEEEEEcCC
Confidence 999999999997 666777665443221111000 0000111110 00 11122333344455554433
Q ss_pred CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1004 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
+.... +..............++ .+.|.+ ++..++....++.+..|.+.
T Consensus 553 ~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~d~~~~~~~~~l~ 600 (814)
T 3mkq_A 553 NRLNY-FVGGKTYNLAHYTKEMY--LLGYLA-RDNKVYLADREVHVYGYEIS 600 (814)
T ss_dssp SEEEE-EETTEEEEEEECSSCCE--EEEEEG-GGTEEEEECTTCCEEEEECC
T ss_pred CeEEE-EeCCeeEEEEECCccEE--EEEEEe-cCCEEEEEcCCCCEEEEEEC
Confidence 32211 11000000000012233 344556 57889999999999999975
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=406.00 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=267.7
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
..|.+|.++|++++|+|+++ +|++|+.||+|+|||+.+++.... +.+|...|.+++|+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~ 161 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS 161 (410)
T ss_dssp CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence 34789999999999999998 599999999999999999987765 7799999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcc
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
|++||+|+.|++|+|||+.++++++ .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 9999999999999999999887665 5779999999999999999 8999999999999999999999999999999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC--------------------CCEEEEE
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC 541 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------~~~l~~~ 541 (1086)
|.+++++ +++.+|++++.|++|++||+.+......+..|...|.+++|+|+ |.+++++
T Consensus 237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999985 47789999999999999999999999999999999999999996 6789998
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||+.++.++..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|. ..|.+
T Consensus 315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~ 385 (410)
T 1vyh_C 315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS 385 (410)
T ss_dssp ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence 86 7789999999999999999988 899999999999999999999999999999999999988764 46999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEC
Q 001396 622 ICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
++|+|++.+|++|+.|++|++|+.
T Consensus 386 l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=362.47 Aligned_cols=294 Identities=15% Similarity=0.237 Sum_probs=266.1
Q ss_pred ceeeeeccCCCCceEeeecCC----CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 394 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spd----g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 394 (1086)
.+.+.+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++..... .+.+|...|.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~ 84 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVV 84 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEE
Confidence 445667899999999999985 44 6999999999999999877543221 1779999999
Q ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 395 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 395 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+++++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999987655 5678889999999999999 899999999999999999999999
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
+..|...|.+++|++ ++.+|++++.||.|++||+++++....+..+...|.+++|+|++++|++++. ++.|++|
T Consensus 160 ~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 999999999999954 7789999999999999999999999999999999999999999999999986 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 634 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 634 (1086)
|+++++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+. ..|.+++|+|++++|+++
T Consensus 234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence 999999999999888 899999999999999999999999999999999999987664 469999999999999999
Q ss_pred ECCCcEEEEECC
Q 001396 635 ANENRIKILETP 646 (1086)
Q Consensus 635 ~~dg~i~iw~~~ 646 (1086)
+.|+.|++||..
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=366.08 Aligned_cols=299 Identities=17% Similarity=0.240 Sum_probs=269.1
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
+....++|.+|.+.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~ 112 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMAC 112 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEE
Confidence 3466788999999999999999998 599999999999999999887654 55688999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCc---cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+|+|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+++++++.
T Consensus 113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp EECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEE
Confidence 9999999999999999999999875421 223346778999999999999999 79999999999999999999999
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.+|...|.++++++++++.+|++|+.||+|++||+++++....+..|...|.+++|+|+++++++++. ++.|++
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~l 266 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRL 266 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEE
Confidence 9999999999999998878889999999999999999999999999999999999999999999999986 778999
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
||+++++.+..+..+. +...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++
T Consensus 267 wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 267 YDLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp EETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEE
T ss_pred EECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEE
Confidence 9999988877766433 23578999999999999999999999999999999988887664 46999999999999999
Q ss_pred EECCCcEEEEE
Q 001396 634 IANENRIKILE 644 (1086)
Q Consensus 634 ~~~dg~i~iw~ 644 (1086)
++.|++|++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=365.02 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=266.6
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
+....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~ 103 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC 103 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence 3456788999999999999999998 599999999999999999987765 66799999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCc-cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+|+|+|++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+
T Consensus 104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999999987642 233346779999999999999875 889999999999999999999999
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+|.+.|.+++|++ ++.++++|+.||+|++||++++.....+..|...|.+++|+|+++++++++. ++.|++||
T Consensus 181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence 99999999999965 6789999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+++++.+..+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++++
T Consensus 255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence 99998877765322 23579999999999999999999999999999999999888664 4699999999999999999
Q ss_pred CCCcEEEEE
Q 001396 636 NENRIKILE 644 (1086)
Q Consensus 636 ~dg~i~iw~ 644 (1086)
.|+.|++||
T Consensus 332 ~D~~i~iWd 340 (340)
T 1got_B 332 WDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEC
T ss_pred CCccEEecC
Confidence 999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=354.69 Aligned_cols=293 Identities=18% Similarity=0.310 Sum_probs=258.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...++|.+|.+.|++++|||+|+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 45678999999999999999998 599999999999999999987765 6689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 477 (1086)
+|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999988 45577899
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-CCCCceEEEEEec--CCCEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~iw 554 (1086)
|...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999764 45799999999999999998877766554 4557888999987 7789999986 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~ 632 (1086)
|+++++++..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+..+. ..+.+++|+|++. +++
T Consensus 214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence 999999999999988 899999999999999999999999999999999999987653 4588999999875 577
Q ss_pred EEECCCcEEEEECCC
Q 001396 633 VIANENRIKILETPE 647 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~ 647 (1086)
+|+.|| +.+|++..
T Consensus 289 sg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEETTE-EEEEECC-
T ss_pred EecCCc-eEEEEecc
Confidence 776654 67777654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=353.61 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=260.4
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+..+|.+|.+.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence 4567899999999999999977447999999999999998754322111 11237799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|||++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+. ++++..+.+|
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence 9999999999999999999999987655 6789999999999999999 89999999999999975 6778889999
Q ss_pred CcceEEEeecccC----CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 479 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 479 ~~~v~~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
...|.++++.+.. ++..+++++.|+.|++||+...+....+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw 223 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW 223 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence 9999999997643 4568999999999999999999888899999999999999999999999986 7789999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC------CCCCCceEEEecCC
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG 628 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~ 628 (1086)
|+.+++.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|
T Consensus 224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 298 (319)
T 3frx_A 224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298 (319)
T ss_dssp ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence 99999999888764 589999999999998888765 59999999988877765331 13457799999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 001396 629 TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~~~~~ 648 (1086)
++|++|+.||.|++|++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=369.25 Aligned_cols=306 Identities=17% Similarity=0.254 Sum_probs=266.8
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
..+.++|.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 4577889999999999999999985 99999999999999999987765 668999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCc----cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976431 1223357799999999999998654 69999999999999999999988
Q ss_pred Ee-----ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 474 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 474 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+ .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 87 679999999999643 567999999999999999984 4667788899999999999999999999986
Q ss_pred ceeEEEEeCCCCeeeeEEecccc----cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC--CCCCCCCce
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR 621 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 621 (1086)
|+.|++||+++++.+..+..+.. +...|.+++|+|+++++++|+.||.|++||+.+++....+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 77899999999999888876541 123489999999999999999999999999999998887732 234557999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
++|+|+|++|++|+.|++|++|++...+
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999999988653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=350.21 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=263.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|+||+++||+|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 78999999999999999999999999999999999887554 5778999999999999999 899999999999999
Q ss_pred CCCCc----eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 466 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 466 ~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
+.++. ....+.+|.+.|.++.|.+. + .+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 98763 45678899999999999653 3 59999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||++++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 7789999999999999999888 8999999999999999999999999999999998888775554456899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|+|++|++|+.|+.|++||..++..+..+.+|...|.+++|+ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999996 789999999999
Q ss_pred Cccceee
Q 001396 702 NKSEVEK 708 (1086)
Q Consensus 702 ~~i~vw~ 708 (1086)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=364.33 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=267.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|..+|++++|+|++.+||+|+.||+|+|||+.+++..+ .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 66899999999999999999999999999999999987665 6889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++++..+.+|...|.+++|++ ++.+|++++.|++|++||++++.....+..|...+.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecC--------------------CCEEEEEECCCcEEEEEcCCCe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6789999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeec
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 685 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 685 (1086)
++..+..|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999988664 468999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCcccceeccccCccceeee
Q 001396 686 EDPKEDVKPEISVEAENKSEVEKP 709 (1086)
Q Consensus 686 ~~~s~d~~~l~s~~~d~~i~vw~~ 709 (1086)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67889999999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=351.91 Aligned_cols=307 Identities=15% Similarity=0.228 Sum_probs=251.2
Q ss_pred cceeeeeccCCC-CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 318 KTVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 318 ~~~~~~l~~h~~-~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
..++++|.+|.+ .|++++|||||+ +||+|+.|++|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 357788999988 999999999998 599999999999999988764422 11246899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeE
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTY 473 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~---~~~ 473 (1086)
+|+|+|++||+|+.|++|+|||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23346889999999999999999 89999999999999998764 456
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
.+.+|...|.+++|+| ++.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 7889999999999965 667999999999999999987653 4578889999999999999999999986 7789
Q ss_pred EEEeCCCC---------------eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe----eEE---E
Q 001396 552 VEWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LLT---T 609 (1086)
Q Consensus 552 ~iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~----~~~---~ 609 (1086)
++||.... +++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+. ... .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 296 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence 99996322 223344442 24789999999999999999999999999987642 111 1
Q ss_pred EcCCCCCCCCceEEEecCC-CEEEEEECCCcEEEEECCCCCeee
Q 001396 610 IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
....++...|.+++|+|++ .+|++++.||+|++|+..+.+...
T Consensus 297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1122345679999999987 599999999999999999876543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=346.54 Aligned_cols=288 Identities=16% Similarity=0.246 Sum_probs=264.0
Q ss_pred ecCCCccEEEEEECCC----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6689999999999985 67999999999999999987653 22335789999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++|+++++.....+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999954 77899999999999999999999998898899999999999999999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..+. ..|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence 86 6789999999999999999887 899999999999999999999999999999999998887664 46899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999996 788899999999
Q ss_pred Cccceeee
Q 001396 702 NKSEVEKP 709 (1086)
Q Consensus 702 ~~i~vw~~ 709 (1086)
+.|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=340.37 Aligned_cols=295 Identities=18% Similarity=0.310 Sum_probs=261.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
....++.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 45678899999999999999998 599999999999999999887654 6789999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
..+|.+++|++ ++.+|++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999999955 67899999999999999999988776654 45567999999999999999886 7789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE--
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-- 635 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-- 635 (1086)
+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998877333334444445778899999999999999999999999988664 4689999999999999997
Q ss_pred CCCcEEEEECC
Q 001396 636 NENRIKILETP 646 (1086)
Q Consensus 636 ~dg~i~iw~~~ 646 (1086)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=357.54 Aligned_cols=319 Identities=15% Similarity=0.210 Sum_probs=230.5
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
+.+..+.....|++....+ ..|...|.+++|+|||++|++++.+. +++||- .++
T Consensus 20 ~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v~ 73 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SIW 73 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EEE
T ss_pred EecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eEE
Confidence 4444456678888653222 24888999999999999999998743 244431 233
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEE----EEcCCCCCeEEEEEcCCCCC
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~~ 851 (1086)
+|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| +++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 152 (357)
T 4g56_B 74 VFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGT 152 (357)
T ss_dssp EESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSS
T ss_pred EEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCC
Confidence 44444433222221212247888999999999988877779999999999887643 3457999999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 930 (1086)
+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++.... + ....+.
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~--- 226 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD--- 226 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC---
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc---
Confidence 999999999999999999999999999999999999999885 789999999999999988653221 1 111222
Q ss_pred CCceEEEEecCC-CEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCC-CEEEEEECCCcEEEEEcCCCcee
Q 001396 931 PSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 931 ~~v~~~~~s~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.||+|+|||+.+++++
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 368999999985 56777 5789999999999998876 56899999999999987 57999999999999999999877
Q ss_pred eeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCC
Q 001396 1008 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
..+. |.. .+.+++|+|.|+.+|++++.||+|++|+++..+.
T Consensus 306 ~~~~---------H~~--~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 306 RDLS---------HRD--FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EECC---------CSS--CEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EECC---------CCC--CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 5432 233 3458999997789999999999999999976553
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=354.59 Aligned_cols=294 Identities=13% Similarity=0.148 Sum_probs=239.5
Q ss_pred ccCCCCceEeeecCCCceEEEEEec------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..|...|++++|||||+ +||+|+. |+.|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 57999999999999998 5899987 67889998887765432111 14468899999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCcccc-ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|++|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998875432 224558999999999999999 899999999999999999999999999
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iw 554 (1086)
|...|++++|++..+ .++++++.||+|++||+++++....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999976533 47899999999999999988776544 3456679999999985 56777765 6779999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 632 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 632 (1086)
|+++++.+..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+. +...|.+++|+| ++.+|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEE
Confidence 999999999999888 899999999987 578899999999999999998887653 345699999998 899999
Q ss_pred EEECCCcEEEEECCCC
Q 001396 633 VIANENRIKILETPES 648 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~ 648 (1086)
+++.||+|++|++...
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=347.23 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=239.7
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccce-eeeeeeecCCCccEEEEEECCCCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
..|...|.+++|||||+ +|++++ |+++++||... ..|+...... .........|...|.+++|+||+
T Consensus 27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 34666799999999998 577777 78889997321 1111110000 00000122356789999999985
Q ss_pred EEEEEeCCCEEEEEEecCCCccccc-eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
+|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 6889999999999999998865432 23558999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--CCCCceEEEEEecC-CCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
++++|++.. ..+|++++.|++|++||+++++....+. .+...+.+++|+|+ ++++++++. ++.|++||++++
T Consensus 173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence 999997643 2588999999999999999988877664 34557899999995 567777775 778999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE 637 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d 637 (1086)
+++..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+.++++.. +..| ...|.+++|+|+++ +|++++.|
T Consensus 248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETT
T ss_pred cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCC
Confidence 9999999988 899999999998 578899999999999999988654 4444 45799999999886 67789999
Q ss_pred CcEEEEECCCC
Q 001396 638 NRIKILETPES 648 (1086)
Q Consensus 638 g~i~iw~~~~~ 648 (1086)
++|++|++.+.
T Consensus 322 ~~v~~w~v~~~ 332 (344)
T 4gqb_B 322 HQVVHHVVPTE 332 (344)
T ss_dssp SCEEEEECCC-
T ss_pred CeEEEEECCCC
Confidence 99999999865
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=342.05 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.9
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|...|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77999999999999999999999999999999998876544 5678899999999999999 899999999999999
Q ss_pred CCCC------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec--CCCE
Q 001396 466 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 537 (1086)
Q Consensus 466 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~ 537 (1086)
+... .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34577888999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 7789999999999999998887 899999999999999999999999999999998888776555445
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccccee
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 697 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 697 (1086)
.+.+++|+|++++|++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999996 78999999
Q ss_pred ccccCccceee
Q 001396 698 VEAENKSEVEK 708 (1086)
Q Consensus 698 ~~~d~~i~vw~ 708 (1086)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=353.74 Aligned_cols=327 Identities=15% Similarity=0.218 Sum_probs=269.3
Q ss_pred cCCCccEEEEEECCCCC-EEEEEeCCCEEEEEEe----cCCCccc---cceEecc----------ccccEeEEEecCCCC
Q 001396 387 RDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCK 448 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~~~~----------h~~~v~~v~~s~d~~ 448 (1086)
..|...|.+++|+|+|+ +||+|+.||.|++||+ .+++.+. ....+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 8876200 1112222 688999999999999
Q ss_pred cEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCc---
Q 001396 449 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--- 525 (1086)
Q Consensus 449 ~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--- 525 (1086)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+++....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 899999999999999 78899999999999999999955 6779999999999999999999888888777766
Q ss_pred ------------eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC
Q 001396 526 ------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 593 (1086)
Q Consensus 526 ------------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 593 (1086)
+.+++|++++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCC
Confidence 89999999866 555554 6789999999998888887776 788888888888888888888
Q ss_pred CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCce
Q 001396 594 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
|.|++||+.+++.+..+.
T Consensus 269 ~~i~i~d~~~~~~~~~~~-------------------------------------------------------------- 286 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFY-------------------------------------------------------------- 286 (425)
T ss_dssp SCEEEECSSSBSCSEEEC--------------------------------------------------------------
T ss_pred CEEEEEECCCCccceEec--------------------------------------------------------------
Confidence 888888776541111000
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeE
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 753 (1086)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~ 832 (1086)
+|...|.+++|+|++ ++++++ ++.|++||+.+++.+..
T Consensus 287 ----------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 287 ----------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp ----------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred ----------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence 144456677777777 666665 68888888888888888
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------eEEEeccccC--CeEEEEEeC
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSD 890 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~v~~l~~sp 890 (1086)
+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|
T Consensus 326 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp EECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred cccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 888999999999999 89999999999999999999988 8899999977 999999999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 001396 891 ALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 891 dg~~l~s~s~dg~i~iwd~~ 910 (1086)
++++|++++.||.|++|++.
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEecCceEEEEeec
Confidence 99999999999999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=356.77 Aligned_cols=341 Identities=13% Similarity=0.187 Sum_probs=282.9
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEec----CCCceeeeeeeeeeeccccceeee-eeeecCCCccEEEEEEC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~s 399 (1086)
..|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+. .++. .....+|...|.+++|+
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR---HPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE---CCCCCC------CBCEEEEEEC
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc---ccccccccccCCCCceEEEEEc
Confidence 3566899999999999834899999999999999 88873211000 00000 0000 00122378899999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
|++++||+++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..+.
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 191 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKE 191 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence 9999999999999999999 4444443 6778999999999999999 89999999999999999999999998888
Q ss_pred cc---------------eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 480 AP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 480 ~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.. +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|+++++++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 267 (425)
T 1r5m_A 192 TGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD- 267 (425)
T ss_dssp --------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-
T ss_pred cCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-
Confidence 77 888998753 36999999999999999999998899999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
++.|++||+.+++.+..+.+|. ..|.+++|+|++ ++++++.||.|++||+.+++.+..+..+. ..+.+++|
T Consensus 268 ---d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~ 338 (425)
T 1r5m_A 268 ---DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRI 338 (425)
T ss_dssp ---TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEE
T ss_pred ---CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEE
Confidence 6779999999999999998877 899999999999 99999999999999999999998888654 36899999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCC--------------------eeeecccccc--ceeeeEEccCCCceeccccCCee
Q 001396 625 NKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------- 403 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN--------------- 403 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC---------------
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc---------------
Confidence 9999999999999999999999877 7788888866 88888885
Q ss_pred eecCCCCCCcccceeccccCccceeeee
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+++++++++.|+.+++|++.
T Consensus 404 -------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 -------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------TTSSEEEEEESSSCCEEEECC
T ss_pred -------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=345.66 Aligned_cols=296 Identities=13% Similarity=0.164 Sum_probs=226.0
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
+...|.+++|+|||+.+++++ ++++++|+... .+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 77888887321 11111100000000000002567899999999
Q ss_pred CCCEEEEEeCCeEEEEEccCceEEE----EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC
Q 001396 807 NDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 882 (1086)
Q Consensus 807 dg~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 882 (1086)
|+.+++.+.||+|+|||+.+++.+. .+.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 9765544448999999999876543 3458999999999999 8999999999999999999999999999999999
Q ss_pred eEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC-CCEEEE-EeCCeEEEEEcC
Q 001396 883 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 959 (1086)
Q Consensus 883 v~~l~~spdg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~ 959 (1086)
|++++|+|++. +|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +.+|++ +.|+.|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 99999999984 789999999999999998653321 111 1111 25889999996 456777 578999999999
Q ss_pred CccceeccccCCccCEEEEEEeCCC-CEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCC
Q 001396 960 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1038 (1086)
Q Consensus 960 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1038 (1086)
+++++.. +.+|...|++++|+||| ++|++|+.||+|+|||+.++++.. +. .|.. .+.+++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~--~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRD--FVRDATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSS--CEEEEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCC--CEEEEEEeCCCCe
Confidence 9999887 56899999999999998 579999999999999999987653 22 1333 3458999996556
Q ss_pred EEEEEeCCCcEEEEccCCC
Q 001396 1039 QFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1039 ~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+|++++.||+|++|+++..
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=339.02 Aligned_cols=297 Identities=17% Similarity=0.201 Sum_probs=235.1
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeee-cC-CCccEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNR 395 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~ 395 (1086)
.+++++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++...... .+ .+ |...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEE
Confidence 3567889999999999999998 5999999999999999876422110 13 34 9999999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCC----ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC-C-
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-G- 469 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~-~- 469 (1086)
++|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. +
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999996432 1223346789999999999999999 899999999999999943 2
Q ss_pred --ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC--ceeEEecCCCCceEEEEEecC--CCEEEEEee
Q 001396 470 --SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGT 543 (1086)
Q Consensus 470 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~ 543 (1086)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... +....+..|...|.+++|+|+ +.+|++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 46778899999999999965 6679999999999999998766 466788899999999999998 778999886
Q ss_pred CCCCceeEEEEeCCCC--------eeeeEEec-ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee--EEEEcC
Q 001396 544 SKEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA 612 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~ 612 (1086)
++.|++||+.++ .....+.+ |. ..|.+++|++++ +|++++.||.|++||..+++. .....
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~- 290 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA- 290 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-
Confidence 778999998765 23334433 44 899999999765 899999999999999988743 33321
Q ss_pred CCCCC-CCceEEEec--CCCEEEEEECCCcEEEEECCC
Q 001396 613 GGGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 613 ~~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
..+.. .|.+++|+| ++++|++++.||+|++|++..
T Consensus 291 ~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 22233 689999999 789999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=342.20 Aligned_cols=302 Identities=17% Similarity=0.276 Sum_probs=245.9
Q ss_pred cceeeeeccCCCCceEeee-----cC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 318 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~-----sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
..+..+|.+|++.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCC
Confidence 3567789999999999999 77 887 6999999999999999865432100 001123789999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+. +..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GEC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCc
Confidence 99999999999999999999999999999987655 6789999999999999999 89999999999999987 444
Q ss_pred eEEee---cCCcceEEEeecccCC--------ccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 472 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 472 ~~~~~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
..... +|...|.+++|++... +.+|++++.||.|++|| ........+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEE
Confidence 44443 7899999999976532 26899999999999999 445566678889999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEE--EEcC-----
Q 001396 541 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDA----- 612 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~----- 612 (1086)
++. ++.|++||+.. ......+. +. ..|.+++|+|++.++++ +.|+.|++||+.+++... .+..
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 986 77899999954 44444443 23 57999999999887654 557889999998876543 3321
Q ss_pred ----CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 613 ----GGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 613 ----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 133456889999999999999999999999997653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=333.42 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=242.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|+|||++||+|+.||+|++||+.+++.++ .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999987655 6778999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEec-CCCEEEEEee
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-d~~~l~~~~~ 543 (1086)
+.+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 667999999999999999988744 457888999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec--CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 7789999998887766665433 36789999986 67899999999999999999999999998764 46899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEcc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 668 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p 668 (1086)
++|+|++++|++++.||+|++||..+++....+..+...+.+++++|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=346.06 Aligned_cols=303 Identities=15% Similarity=0.232 Sum_probs=248.0
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
+|.+.|++++|||||++ ||+|+ +++++||++.+|+.+.......-. ..............+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECCCCCEE
Confidence 69999999999999984 88876 689999999999877542110000 0000000011112344569999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
|+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886554 6789999999999999999 89999999999999999999888876 66779999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
++++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98653 6789999999999999999988776655 467789999999999999999986 77899999876
Q ss_pred C------------eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 559 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 559 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
. .+...+.+|. ..|.+++|+|++.+|++|+.|+.|++||+.+++.+..+..|. ..|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence 3 3445666776 889999999999999999999999999999999999888764 4689999886
Q ss_pred ------CCCEEEEEECCCcEEEEECCC
Q 001396 627 ------NGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 627 ------~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
++++|++++.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=351.57 Aligned_cols=290 Identities=15% Similarity=0.166 Sum_probs=257.1
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999987554 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-----cCCCCceEEEEEec
Q 001396 466 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 533 (1086)
Q Consensus 466 ~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 533 (1086)
+.+.. ....+.+|.+.|.++.|.+. ++..|++++.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87542 34667899999999999765 3457999999999999999999887766 56778899999987
Q ss_pred -CCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 534 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 534 -d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++++++++. ++.|++||++ .++.+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 7789999998 557788888887 899999999999999999999999999999999988876
Q ss_pred CCCC-----CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec----cccccceeeeEEccCCCceeccccCCee
Q 001396 612 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 612 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++|+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234789999999999999999999999999988877666 6788899999996
Q ss_pred eecCCCCCCcccceeccccCccceeeee
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+|+++++++.|++|++|++.
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECC
T ss_pred -------CCCCEEEEeeCCCCEEEEecC
Confidence 789999999999999999975
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=380.27 Aligned_cols=523 Identities=13% Similarity=0.060 Sum_probs=378.3
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
+...+.+.+|||+ + ||.++. +.|.+|++.+|+... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4557899999964 4 555554 789999998887543 667999999999999999999
Q ss_pred EEeCC------CEEEEEEecCCCccccceEeccccccE-------eEEEecCCCCcEEEEEEeCC------CcEEEEeCC
Q 001396 407 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 467 (1086)
Q Consensus 407 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~ 467 (1086)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999988762 2 467888888 9999999998 67777754 468888887
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEc------------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
+++.. .+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77653 333332 33556754 5 7887753 345677754444555556788889999999988
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
..++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+. ++.|++||+.... +..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence 44444432 34455665432 33344444443 356679999999988874 8999999995544 33444321
Q ss_pred ---------CCCCCceEEEe-cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 615 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 615 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
+...+..++|+ |||+++++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877553221 11
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCccccccccCCccccc-ceEEEEEecCCceEEEeeccceeE-EeeccCCcc
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 762 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-vw~~~~~~~ 762 (1086)
.+.. .+..++|+ ||+.++.++.++.+. +|+....
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-- 369 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-- 369 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--
Confidence 0223 56778889 998888888776666 6665432
Q ss_pred ccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeE
Q 001396 763 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 841 (1086)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 841 (1086)
. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 370 --------------------~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 370 --------------------K-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp --------------------C-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred --------------------C-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 1 111 11 2667899999999999999988 58999999999998888878989999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 842 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 842 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
+++||| ||++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887644 99999999887 677888988899999999999999999988888887543
Q ss_pred Cceeee-----eeeec-----------------------cCCC-------ccCCCCceEEEEecCCCEEEE---------
Q 001396 912 WGIQTC-----RSLQT-----------------------PDGV-------MTLAPSETHIQFHKDQTRFLL--------- 947 (1086)
Q Consensus 912 ~~~~~~-----~~~~~-----------------------~~~~-------~~~~~~v~~~~~s~dg~~l~~--------- 947 (1086)
...... ..+.. ..+. ....+.+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00000 0000 001135788999999987875
Q ss_pred ---E--eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCc
Q 001396 948 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 948 ---~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
+ ....+.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999988875332 2 568899999999999999866 89999998887
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=335.73 Aligned_cols=289 Identities=14% Similarity=0.181 Sum_probs=247.9
Q ss_pred CCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 327 h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
|.++|.+++|||||+. ++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 4568999999999984 77777767666665544332221 447999999999999999999
Q ss_pred EEeCCCEEEEEEecCCCccccceEec--cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc--eeEEeecCCcce
Q 001396 407 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 482 (1086)
Q Consensus 407 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 482 (1086)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655544444 7999999999999999 89999999999999999887 667788899999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6789999999999999999999988899999999999999999999999986 778999999999988
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEE
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 642 (1086)
..+.. . ..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77753 3 689999999999999999999999999999887653 3333 456899999999999999999999999
Q ss_pred EECCCCCee
Q 001396 643 LETPESNSV 651 (1086)
Q Consensus 643 w~~~~~~~~ 651 (1086)
|++.+++.+
T Consensus 292 ~~~~~~~~~ 300 (337)
T 1gxr_A 292 WRTPYGASI 300 (337)
T ss_dssp EETTTCCEE
T ss_pred EECCCCeEE
Confidence 999877544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=358.14 Aligned_cols=353 Identities=13% Similarity=0.185 Sum_probs=274.8
Q ss_pred CCCceEeeecCCCceEEEEE----------eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~g----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...|.+++|||+|+.+||+| +.|+.|+|||+.+++.... + ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34799999999998679999 8899999999998863211 0 0235889999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCc-cccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCc-----
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS----- 470 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~----- 470 (1086)
|+|++++||+|+.||.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1233367799999999999999 66 79999999999999999887
Q ss_pred -eeE---EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------CCceEEEEEecCC-CEEE
Q 001396 471 -RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLF 539 (1086)
Q Consensus 471 -~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~d~-~~l~ 539 (1086)
... .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 34679999999999764 2579999999999999999999888888776 6789999999997 5788
Q ss_pred EEeeCCCCceeEEEEeCCCC-eeeeEEe-cccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCC
Q 001396 540 SCGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 616 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 616 (1086)
+++.++ .++.|++||++++ ..+..+. +|. ..|.+++|+| ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-- 305 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG-- 305 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--
Confidence 877522 1238999999986 6667777 666 8999999999 89999999999999999999999999988664
Q ss_pred CCCceEEEecCC-CEEEEEECCCcEEEEECCCCCeeeeccc--cccceeeeEEccCCCcee---------------cccc
Q 001396 617 PENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIA 678 (1086)
Q Consensus 617 ~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~~---------------~~~~ 678 (1086)
..|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.....+ ....
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence 468999999998 8999999999999999987754332211 000000011111100000 0111
Q ss_pred CCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 679 ~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
...++| +|+|+++++++.|+.|++|++.
T Consensus 386 ~~~~~~----s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 386 SPAAHW----AFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCEE----ETTTEEECBCTTSSCBCCBCCC
T ss_pred ccceEE----eeCCeEEEEeCCCCeEEEEEec
Confidence 113344 7999999999999999999976
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=336.07 Aligned_cols=303 Identities=18% Similarity=0.260 Sum_probs=260.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 4567899999999999999985337999999999999999887644321 12237899999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeec
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG 477 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~ 477 (1086)
+|||++|++++.|+.|++|+...+.... ....+...+..+.++++++ .+++++.|+.+++||+...... ....+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998876444 4567888899999999999 7999999999999998766543 44577
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
|...+..++|++.....++++++.|+.|++||+++.+....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988877789999999999999999999999999999999999999999999999986 7789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-------CCCCCCCceEEEecCCCE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-------GGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~ 630 (1086)
+++.+..+..+ ..+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|++
T Consensus 246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99999888764 4899999999864 56677799999999999888777643 234557899999999999
Q ss_pred EEEEECCCcEEEEECCCCC
Q 001396 631 LAVIANENRIKILETPESN 649 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~ 649 (1086)
|++|+.||.|++||+.+|.
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 9999999999999998774
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=328.62 Aligned_cols=297 Identities=21% Similarity=0.270 Sum_probs=252.7
Q ss_pred eecCCCccEEEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc--ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 385 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 388999999999999965 89999999999999999754321 23346789999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecC------C
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 535 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------~ 535 (1086)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...+.+++|+|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999955 67799999999999999996 4566778889999999999985 4
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 237 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-- 237 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence 47888876 7789999999999999999888 89999999999999999999999999999999999888765
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 358999999999999988765 5999998865444333211000
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccC
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
....+...+.+++|+|||++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999998653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=326.44 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=260.9
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 378999999999999999999999999999999999887554 6789999999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
|+.+++++..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6679999999999999999999999999999999999999999999999986
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 6789999999998887775433 46899999999999999999999999999999999998887654333334445
Q ss_pred e-cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc--cc
Q 001396 625 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 701 (1086)
Q Consensus 625 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d 701 (1086)
+ +++.++++++.||.|++||+.+++.+..+.+|...|.+++++ |++.++++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678899999999999999999999999999999999999996 6677788875 69
Q ss_pred Cccceeeee
Q 001396 702 NKSEVEKPL 710 (1086)
Q Consensus 702 ~~i~vw~~~ 710 (1086)
++|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999854
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=366.85 Aligned_cols=529 Identities=10% Similarity=0.016 Sum_probs=374.3
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC------CCcEE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 462 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~ 462 (1086)
+...+.+.+||| +.||+++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456788999995 58888876 68999999887633 4678999999999999999 5665543 34799
Q ss_pred EEeCCCCceeEEeecCCcce-------EEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 463 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|.+|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99988876 67788898888 8899965 66677777754 3577788766554333222 23467
Q ss_pred EEecCCCEEEEEeeCCC--------CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 530 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
+|+| | +++++..+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777642211 12234455433223445556666 89999999998 56667788899999987
Q ss_pred CC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 602 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 602 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
.. +.....+..+. .+...+|+|||+.++.+. ++.|++|+.... .+..+..+...
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~-------------------- 286 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLE-------------------- 286 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCC--------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCccc--------------------
Confidence 53 44444554433 357789999999998874 789999998432 22222110000
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEe-cCCceEEEeeccceeEEeeccC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 759 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~vw~~~~ 759 (1086)
... .| ..+...+.+++|+ |||+.++.++ ++.+.+|+...
T Consensus 287 ---------------------~~~-~~-----------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 287 ---------------------SPE-DR-----------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ---------------------BCC-SE-----------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ---------------------ccc-cc-----------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 000 00 0144567889999 9999888877 77888877543
Q ss_pred CccccCcccccccCCceecCCCCCceeeecCCCCCCCC-CeeEEEeecCCCEEEEEeC-CeEE-EEEccCceEEEEEcCC
Q 001396 760 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 836 (1086)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l~~~~d-g~i~-iwd~~~~~~~~~~~~~ 836 (1086)
. . ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++... +..|
T Consensus 327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~ 377 (1045)
T 1k32_A 327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN 377 (1045)
T ss_dssp S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC
T ss_pred C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC
Confidence 2 1 111 11 2455 78899999 9999999885 6688 88998776544 4477
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC----------cEEE
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 906 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg----------~i~i 906 (1086)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 899999999999999999999998888878999999999999999999887654 8999
Q ss_pred EECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccc----------------------
Q 001396 907 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC---------------------- 963 (1086)
Q Consensus 907 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~---------------------- 963 (1086)
||+.+++. .....+.. .+..++|+|||++|+. +.++...+|+......
T Consensus 457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 99998541 12222222 4778999999999988 4445555554321111
Q ss_pred --------------------eeccccCCccCEEEEEEeCCCCEEEE-------------EECCCcEEEEEcCCCceeeee
Q 001396 964 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 964 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~s-------------~~~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
....+..|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 00112346688999999999987875 123457888999888754222
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
. .+.+++|+| ||+.|++++.+ .|++|++....
T Consensus 608 ~--------------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N--------------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E--------------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c--------------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234688999 79999998876 89999996543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.21 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=248.9
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEecccc------------------ccEeEEEecCCCCc
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 449 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~v~~s~d~~~ 449 (1086)
+|...|.+++|||||++||+|+ ++.++||++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987654 333332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 450 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 450 l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66799999999999999999988776665 44578999
Q ss_pred EEec-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 530 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 530 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
+|+| +++++++++. ++.|++||+.++..+..+... ..|...|.+++|+|++++|++++.|+.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 678999999999888776311 123389999999999999999999999999999764
Q ss_pred e------------eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 605 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 605 ~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
. +...+..| ...|.+++|+|++.+|++++.|+.|++||..++..+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 3 33444444 446899999999999999999999999999999999999999999999999864332
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
.|++.++++++.|++|++|++..
T Consensus 367 ----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 367 ----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----------------CCCCCEEEEECCCCcEEECcccc
Confidence 57899999999999999999763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.87 Aligned_cols=294 Identities=16% Similarity=0.202 Sum_probs=246.5
Q ss_pred ecCCCc-cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 386 VRDPGV-SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~-~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+.+|.. .|.+++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+|+ +|++|+.|++|++|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW 88 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence 778887 999999999999999999999999999998764333323468999999999999999 89999999999999
Q ss_pred eCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecCCCEEE
Q 001396 465 DAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 465 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
|+.++ +++..+.+|...|.+++|++ ++.+|++++.|++|++||++.... ...+..|...|.+++|+|++++|+
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence 98877 45788999999999999965 678999999999999999987643 456778889999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC-------------
Q 001396 540 SCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV------------- 604 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~------------- 604 (1086)
+++. ++.|++||..+++ ....+.+|. ..|.+++|+|++++|++++.|++|++|+....
T Consensus 167 s~s~----d~~i~~w~~~~~~~~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 167 SASY----DDTVKLYREEEDDWVCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp EEET----TSCEEEEEEETTEEEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred EEeC----CCcEEEEEecCCCEEEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 9986 6789999998875 346677777 89999999999999999999999999996321
Q ss_pred --eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCe---------eeeccccccceeeeEEccCCCce
Q 001396 605 --QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 605 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~ 673 (1086)
+++..+... +...|.+++|+|++..|++++.|+.|++|+...... .....+|...|.+++|+
T Consensus 240 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~------ 312 (345)
T 3fm0_A 240 SWKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN------ 312 (345)
T ss_dssp EEEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC------
T ss_pred ccceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe------
Confidence 233344331 335689999999999999999999999999875421 12345788999999997
Q ss_pred eccccCCeeeecCCCCCCc-ccceeccccCccceeeeeecC
Q 001396 674 GAGIANGSVSVNEDPKEDV-KPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~-~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
|++ .++++++.|++|++|+.....
T Consensus 313 ----------------p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 313 ----------------PKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp ----------------SSSTTEEEEEETTSCEEEEEECC--
T ss_pred ----------------CCCceEEEEcCCCCcEEEEEecCCC
Confidence 455 479999999999999986433
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=322.86 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=232.3
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888887 99999999987 8999999999999999875 4455553322455799999999999999999
Q ss_pred CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCc
Q 001396 636 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 715 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~ 715 (1086)
.|++|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975321000
Q ss_pred cccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCC
Q 001396 716 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 795 (1086)
Q Consensus 716 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 795 (1086)
. ... . ... + .+|
T Consensus 95 -------------~---------~~~-~-----------------------------------------~~~--~--~~h 106 (330)
T 2hes_X 95 -------------F---------EMD-L-----------------------------------------LAI--I--EGH 106 (330)
T ss_dssp -------------C---------CCE-E-----------------------------------------EEE--E--C--
T ss_pred -------------c---------cce-e-----------------------------------------EEE--E--cCC
Confidence 0 000 0 000 0 026
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEEccC----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 796 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
...|.+++|+|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 77788888888888888887 68888888832 356778899999999999999 8999999999999999999876
Q ss_pred --eeEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCce---eeeeeeeccCC-CccCCCCceEEEEecCC
Q 001396 871 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 871 --~~~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~~s~dg 942 (1086)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678899999999999999999 77999999999999999875321 11123333333 44 379999999877
Q ss_pred CEEEEEeCCeEEEEEcCCcc--ceeccccCCcc-CEEEEEEeC--CCCEEEEEECCCcEEEEEcCC
Q 001396 943 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 943 ~~l~~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
.++..+.|+.|++|+..+++ .......+|.. .|.+++|+| ++++|++|+.||+|++||+..
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 44444789999999998774 34344467876 999999999 789999999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=345.16 Aligned_cols=350 Identities=12% Similarity=0.115 Sum_probs=284.8
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
+.+++++|+|+|++ |++|+.||.|++||+.+++.... +.+| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 34668999999996 89999999999999988765532 3344 455666899999999999
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
+.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876544 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCceeEEecC---CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
+ ++.+|++++.||.|++||+++++....+.. +...+.++++.+++...+ .
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence 5 678999999999999999999888887764 455777887776543210 1
Q ss_pred ecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCcEEEEE
Q 001396 566 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 644 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~ 644 (1086)
..+ ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ +|++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 112 267888999999999999999999999999999888777542 234689999999999 999999999999999
Q ss_pred CCCCCe-eeeccc-cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc-c-
Q 001396 645 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-L- 720 (1086)
Q Consensus 645 ~~~~~~-~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~- 720 (1086)
+.++.. +..+.. +...+.++.+ ++++++++++.|+.+++|++.......... .
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 666665 5556666644 457789999999999999987532221110 0
Q ss_pred -ccCCcccccceEEEEEecCCc---eEEEeeccceeEEeecc
Q 001396 721 -LLPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 758 (1086)
Q Consensus 721 -~~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~vw~~~ 758 (1086)
......+...|.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 001134778899999999999 89999999999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=343.45 Aligned_cols=347 Identities=12% Similarity=0.111 Sum_probs=282.9
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999999877655 23445 4455667899999 89999999999999999999
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
....+.+|...|.+++|++ ++.+|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 9998899999999999965 6779999999999999999999999999999999999999999999999986 678
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
|++||+.+++.+..+..+..+...+.+++|.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999999877667889999988765332 001 11245788999999999
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|++++.||.|++||+.++.....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~------------------------------------------------------- 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLP------------------------------------------------------- 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEcc-------------------------------------------------------
Confidence 9999999999999987653221110
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecC
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 790 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 790 (1086)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEeecCCC-EEEEEe-CCeEEEEEccCceE-EEEEcC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001396 791 TDSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 791 ~~~~~~~~v~~l~~s~dg~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 866 (1086)
.+|...|.+++|+|++. ++++++ ||.|++||+.+++. +..+.. |...|.++.+. ++++|++++.||.|++|+
T Consensus 287 --~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 287 --SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp --CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEE
T ss_pred --cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEe
Confidence 01555677777777777 777776 57888888877643 555555 66778888654 577999999999999999
Q ss_pred cCCc---------eeEEEeccccCCeEEEEEeCCCC---EEEEEeCCCcEEEEECCC
Q 001396 867 ARSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 867 ~~~~---------~~~~~l~~h~~~v~~l~~spdg~---~l~s~s~dg~i~iwd~~~ 911 (1086)
+.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9873 22334567899999999999999 788888899999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=348.27 Aligned_cols=384 Identities=12% Similarity=0.133 Sum_probs=288.7
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeee-cCCCccEEEEEECC-CCCEEEEEeC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYS 410 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp-dg~~las~~~ 410 (1086)
...|+|+++. +++++ .|+ .+|+.+.. + .+|.+.|.+++|+| ++++||+|+.
T Consensus 32 ~~~f~~~~~~-~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~ 84 (437)
T 3gre_A 32 YKEFGPIQEI-VRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSD 84 (437)
T ss_dssp CGGGCCCCCC-CCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred hhhcCCcccc-ccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecC
Confidence 3468999985 66554 377 45555543 4 78999999999999 9999999999
Q ss_pred CCEEEEEEecC---CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC---CCceeEEeecCCcceEE
Q 001396 411 KHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 411 d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~ 484 (1086)
||+|+|||+.+ +...+....+ +|...|.+++|+|+++ +|++++.|++|++||+. +++.+..+.+| .+..
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~ 159 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRK 159 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEE
T ss_pred CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEE
Confidence 99999999987 5534333333 5999999999999999 89999999999999994 78877777766 6777
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE--EecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
+.+++.. +...+.++. +++++.++++++. ++.|++||+++++.+
T Consensus 160 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 160 INLKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERL 205 (437)
T ss_dssp EEGGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeee
Confidence 7775531 122334444 6689999999986 778999999999999
Q ss_pred eEEec--ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe----cCCCEEEEEEC
Q 001396 563 RTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIAN 636 (1086)
Q Consensus 563 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~ 636 (1086)
..+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ +++.+|++++.
T Consensus 206 ~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 206 QIIENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEEccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcC
Confidence 99988 55 8999999999999999999999999999999999988863322 358899655 46889999999
Q ss_pred CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcc
Q 001396 637 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 716 (1086)
Q Consensus 637 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~ 716 (1086)
||.|++||+.+++.+..+.++...+..+.+.|
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 313 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP------------------------------------------------ 313 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSC------------------------------------------------
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecc------------------------------------------------
Confidence 99999999999888877776665554333332
Q ss_pred ccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCC
Q 001396 717 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 796 (1086)
Q Consensus 717 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 796 (1086)
+++.+ .+.. +.+..|.
T Consensus 314 ----------------------~~~~l----~~~~--------------------------------------~~~~~~~ 329 (437)
T 3gre_A 314 ----------------------IEKGL----EELN--------------------------------------FCGIRSL 329 (437)
T ss_dssp ----------------------BCSSG----GGCC--------------------------------------CCCCCSG
T ss_pred ----------------------ccccc----ccce--------------------------------------ecccccC
Confidence 21111 0000 0001267
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCC---CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 872 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 872 (1086)
..|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+..
T Consensus 330 ~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~ 399 (437)
T 3gre_A 330 NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHS 399 (437)
T ss_dssp GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC------
T ss_pred CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccc
Confidence 789999999 778888887 8999999999999888888754 3456667776 55555443 33344455
Q ss_pred EEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEE
Q 001396 873 ISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 873 ~~~l~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd 908 (1086)
......|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 400 ~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5666779999999999998 78999999999999995
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=360.45 Aligned_cols=300 Identities=18% Similarity=0.251 Sum_probs=253.9
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.....|.+|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~ 438 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVL 438 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEE
Confidence 344578999999999999998755799999999999999987543211 011227799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~--- 475 (1086)
+|+|++|++|+.|++|+|||+.+++..+ .+.+|...|.+++|+|+++ .|++|+.|++|++||..........
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCC
Confidence 9999999999999999999999987655 6789999999999999999 7999999999999997654333222
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+|...|.+++|+++.....+++++.|++|++||++..+....+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd 589 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWD 589 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEE
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 46889999999987655578999999999999999999999999999999999999999999999986 77899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC-----------------CCC
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPE 618 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~ 618 (1086)
+.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...
T Consensus 590 ~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 590 LAEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp TTTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred CCCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999988776543 5799999999988777665 56699999999998887753211 113
Q ss_pred CceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 619 NPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+++|+|+|++|++|+.||.|++|++.
T Consensus 665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 5689999999999999999999999975
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=323.15 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=266.2
Q ss_pred cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 433 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 433 ~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
.|.++|.+++|+|||+ +++++..++.+.+|+...........+|...|.+++|++ ++.+|++++ ||.|++||+.+
T Consensus 7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence 3567899999999999 787777777777776665555555557999999999954 778999998 99999999987
Q ss_pred Ccee---EEec--CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCC
Q 001396 513 LGAR---VDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 513 ~~~~---~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
.... ..+. .+...+.+++|+|+++++++++. ++.|++||+.+++ ....+..+. ..+.+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK 154 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence 6532 2222 67889999999999999999886 6789999999887 556666666 8899999999999
Q ss_pred EEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeE
Q 001396 586 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
++++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++++++++.|+.|++||+.+++....+
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------- 221 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------- 221 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence 99999999999999999999998887653 46899999999999999999999999998754221110
Q ss_pred EccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEE
Q 001396 666 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 745 (1086)
Q Consensus 666 ~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 745 (1086)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEc
Q 001396 746 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV 824 (1086)
Q Consensus 746 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~ 824 (1086)
.+...+.+++|+|+++++++++ ++.|++||+
T Consensus 222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 0233466777777777777776 577888888
Q ss_pred cCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 001396 825 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904 (1086)
Q Consensus 825 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i 904 (1086)
.+++.. .+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus 254 ~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 254 NKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 776653 5677899999999999 8999999999999999999999887554 488999999999999999999999999
Q ss_pred EEEEC
Q 001396 905 FVWDV 909 (1086)
Q Consensus 905 ~iwd~ 909 (1086)
++|++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=332.93 Aligned_cols=328 Identities=16% Similarity=0.223 Sum_probs=281.1
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+.|.+|.+.|.. +++++|+ +|++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR 168 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence 34678999987643 3566787 599999999999999999988765 77899999999997
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|.
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 239 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV 239 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence 6799999999999999999987655 678999999999996 45 79999999999999999999999999999
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..|.++++ ++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.++
T Consensus 240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~ 309 (445)
T 2ovr_B 240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG 309 (445)
T ss_dssp SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence 99999988 5678999999999999999999999999999999999998 8899999986 677999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC-CCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
+.+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||
T Consensus 310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 382 (445)
T 2ovr_B 310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG 382 (445)
T ss_dssp CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence 9999998887 788887774 6799999999999999999999999887532 34568888885 67999999999
Q ss_pred cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccc
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 718 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~ 718 (1086)
.|++||+.+++.+..+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~------------------------------------------------------------- 401 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTL------------------------------------------------------------- 401 (445)
T ss_dssp EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence 9999999988766544210
Q ss_pred ccccCCcccccceEEEEEecCCceEEEeeccce----eEEeeccC
Q 001396 719 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 759 (1086)
Q Consensus 719 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~vw~~~~ 759 (1086)
....+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00125667888999999998888888887 88888764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.00 Aligned_cols=288 Identities=20% Similarity=0.224 Sum_probs=240.5
Q ss_pred eecCCCccEEEEEE-----CC-CCCEEEEEeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEE
Q 001396 385 LVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s 454 (1086)
.+.+|.+.|.+++| ++ |+++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 48899999999999 77 9999999999999999999865421 22346789999999999999999 8999
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec---CCCCceEEEEE
Q 001396 455 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAY 531 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~ 531 (1086)
|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999965 678999999999999999974 3333332 56778999999
Q ss_pred ecCC----------CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 532 SANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 532 s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
+|++ .++++++. ++.|++|| .+++....+.+|. ..|.+++|+|++++|++|+.||.|++||+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9987 68888886 77899999 4567777888877 89999999999999999999999999999
Q ss_pred C-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee--ecc-----------ccccceeeeEEc
Q 001396 602 N-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSVN 667 (1086)
Q Consensus 602 ~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~~ 667 (1086)
. .......+... ..|.+++|+|++.+++++ .|+.|++|++.+..... .+. +|...+.+++|+
T Consensus 243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 4 44444444322 248999999999888755 57789999998765433 222 456667777775
Q ss_pred cCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 668 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 668 p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
|+|+++++++.|+.|++|++..
T Consensus 319 ----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 319 ----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred ----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 7899999999999999999764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=334.11 Aligned_cols=305 Identities=17% Similarity=0.230 Sum_probs=267.2
Q ss_pred cceeeeeccCCCCc-eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 318 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V-~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
.....+|.+|.+.| .++.| +++ +|++|+.||+|++||+.+++.+.. +.+|.+.|.++
T Consensus 111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l 168 (464)
T 3v7d_B 111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL 168 (464)
T ss_dssp CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence 34567889999886 55555 556 599999999999999999987765 77899999999
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCce---
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR--- 471 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~~--- 471 (1086)
+|+|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ +++ ++++|+.|++|++||+.++..
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~ 242 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence 999998 99999999999999999987554 6789999999999994 556 899999999999999988763
Q ss_pred --------------------eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEE
Q 001396 472 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 531 (1086)
Q Consensus 472 --------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 531 (1086)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...+.+++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 4567889999988843 5679999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+|+++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999986 6789999999999999999888 899999997 5799999999999999999988776664
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeee-ccccccceeeeEEc
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 667 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~ 667 (1086)
.. ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 32 3467889999999999998 89999999999998875 67788889888885
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=347.00 Aligned_cols=332 Identities=11% Similarity=0.152 Sum_probs=273.1
Q ss_pred ccccEeEEEecCCCCcEEEEEE----------eCCCcEEEEeCCCCc---eeEEeecCCcceEEEeecccCCccEEEEEE
Q 001396 434 HVGNVNDLAFSAPCKQISVITC----------GDDKTIKVWDAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500 (1086)
Q Consensus 434 h~~~v~~v~~s~d~~~l~l~s~----------~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 500 (1086)
+...|.+++|+|+++. +++++ +.|+.|++||+.++. .+..+ .|...|.+++|++ ++.+|++++
T Consensus 11 ~~~~v~~~~~sp~g~~-~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIP-LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH--NNKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSC-EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS--SSSCEEEEE
T ss_pred hhhhcceEeeCCCCCC-EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC--CCCeEEEEc
Confidence 3346889999999875 78888 889999999999886 44444 5899999999954 678999999
Q ss_pred cCCeEEEEEcCC----CceeEEecCCCCceEEEEEecC-CCEEEEEeeCCCCceeEEEEeCCCCe------eeeEEeccc
Q 001396 501 VDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQ 569 (1086)
Q Consensus 501 ~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~ 569 (1086)
.||.|++||+.. ......+..|...|.+++|+|+ ++++++++. ++.|++||+.+++ ....+....
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----NGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS----SSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC----CCeEEEEECCCCcccccccccccccccc
Confidence 999999999988 3467788889999999999998 889999876 6789999999886 333332222
Q ss_pred ccCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC----CCCCceEEEecCC-CEEEEEECCC---cE
Q 001396 570 LQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNG-TLLAVIANEN---RI 640 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~-~~l~~~~~dg---~i 640 (1086)
.+...|.+++|+|+ +.++++++.||.|++||+.+++.+..+..+.. ...+.+++|+|++ .++++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 23489999999999 78999999999999999999999988876531 3568999999997 6899999998 89
Q ss_pred EEEECCCCC-eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 641 KILETPESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 641 ~iw~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
++||+.++. ....+
T Consensus 243 ~~~d~~~~~~~~~~~----------------------------------------------------------------- 257 (416)
T 2pm9_A 243 LIWDLRNANTPLQTL----------------------------------------------------------------- 257 (416)
T ss_dssp CEEETTSTTSCSBCC-----------------------------------------------------------------
T ss_pred EEEeCCCCCCCcEEe-----------------------------------------------------------------
Confidence 999877531 00000
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
. .+|...|
T Consensus 258 -----------------------------------------------------------------------~-~~~~~~v 265 (416)
T 2pm9_A 258 -----------------------------------------------------------------------N-QGHQKGI 265 (416)
T ss_dssp -----------------------------------------------------------------------C-SCCSSCE
T ss_pred -----------------------------------------------------------------------e-cCccCce
Confidence 0 0166678
Q ss_pred eEEEeec-CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCC-CEEEEEeCCCeEEEEEcCCceeEEEe
Q 001396 800 PCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN-NVIAIGMDDSTILIYNARSSEVISKL 876 (1086)
Q Consensus 800 ~~l~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~-~~lasg~~dg~v~iwd~~~~~~~~~l 876 (1086)
.+++|+| ++++|++++ ||.|++||+.+++.+..+..|...|.+++|+| ++ ++|++++.||.|++||+.+++.....
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 8888888 888888887 78999999999999999999999999999999 66 89999999999999999876543222
Q ss_pred c-----------------------------------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 877 E-----------------------------------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 877 ~-----------------------------------~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
. .|..++.+++|+|||++|++++.|++|+||++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1 1677888999999999999999999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=330.07 Aligned_cols=298 Identities=15% Similarity=0.138 Sum_probs=250.2
Q ss_pred cceeeeeccCCCCceEeeecCCC-ceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg-~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
....+.+.+|.+.|++++|+|+| + +||+|+.||.|+|||+.+++...... ..+|...|.++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~ 124 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM 124 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence 45677889999999999999999 6 69999999999999999887665311 34799999999
Q ss_pred EECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 397 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 397 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+|+| ++.+|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33443323344568899999999999 8999999999999998 68889999
Q ss_pred ecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCC----CceeEEecCCCCceEEEEEec-CCCEEEEEeeCCCCce
Q 001396 476 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES 549 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~ 549 (1086)
.+|...|.+++|++ ++. +|++++.|+.|++||+++ ......+ .+...+.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 99999999999965 556 899999999999999998 4444444 6888999999999 9999999986 77
Q ss_pred eEEEEeCCCCeeeeEEeccccc--------------CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
.|++||+.+++....+.++... ...+..++|+|++++ +++.||.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 8999999999888887765311 123444666677666 777999999999999999999987654
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
...+..++|+|++++|++++ |+.|++|++++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677789999999999997 89999999874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=350.16 Aligned_cols=341 Identities=10% Similarity=0.058 Sum_probs=250.8
Q ss_pred eeeeeccCCCCceEeeecCCC---------ceEEEE-------------------EeccCcEEEEecCCCceeeeeeeee
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV 371 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg---------~~lla~-------------------gs~dg~v~iwd~~~~~~~~~~~~~~ 371 (1086)
+..++. +.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~---- 199 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK---- 199 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence 333444 56789999999986 5 4565 446788999999887643210
Q ss_pred eeccccceeeeeeeecCCCccEEEEEECCC------CCEEEEEeCCCEEEEEEecCCCcc--------ccceEecccccc
Q 001396 372 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN 437 (1086)
Q Consensus 372 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~ 437 (1086)
...+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... .....+.+|...
T Consensus 200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 0114568899999999997 579999999999999999877532 123367899999
Q ss_pred EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc-eeEEeecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcCCCce
Q 001396 438 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA 515 (1086)
Q Consensus 438 v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~ 515 (1086)
|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++++..++++ .+|++++.|++|++||+++.+.
T Consensus 269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 9999999864 69999999999999999874 45678999999999954335566 7999999999999999988776
Q ss_pred eEEecCCC--CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC
Q 001396 516 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 593 (1086)
Q Consensus 516 ~~~~~~~~--~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 593 (1086)
...+..+. ..+.+++|+|+++.+++++. ++.|++||++++..+..+.+|. ..|.+++|+|++++|++|+.|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence 55554443 35789999999999988875 6689999999999888888887 999999999999999999999
Q ss_pred CcEEEEEcCCCeeEEEEcCC---CCCCCCceEEEecCCCEEEEEECCCcEEEEECC-CCCeeeeccccccceeeeEEccC
Q 001396 594 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
|+|++||+..+ .+...... .....+..++|+|+++.+. ... .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999998654 22111100 0111356889999998553 222 23344333 45677788899999999999864
Q ss_pred CCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 670 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
+ +.+..+++|+.+|.|++|++.
T Consensus 495 ~-------------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 495 S-------------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp T-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred C-------------------CccHHHHhhccCceEEEEEcc
Confidence 2 236689999999999999976
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=330.92 Aligned_cols=296 Identities=12% Similarity=0.125 Sum_probs=257.7
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCc------eeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
.+.+++.+|.+.|++++|+| + +|++|+.||.|+|||+.+++ .+.. +.+|...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~ 64 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG 64 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence 45677899999999999999 4 59999999999999999987 3332 6689999
Q ss_pred EEEEEECCC----C---CEEEEEeCCCEEEEEEecCCCcccc--ceEeccc-----cccEeEEEec----CCCCcEE-EE
Q 001396 393 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAH-----VGNVNDLAFS----APCKQIS-VI 453 (1086)
Q Consensus 393 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h-----~~~v~~v~~s----~d~~~l~-l~ 453 (1086)
|.+++|+|+ | ++|++++.|+.|++||+.+++.... ...+..| ...|.+++|+ |+++ + |+
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence 999999999 9 9999999999999999999875100 2256778 5899999999 9999 7 99
Q ss_pred EEeCCCcEEEEeCCC------CceeE-----Eee-------cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce
Q 001396 454 TCGDDKTIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 515 (1086)
Q Consensus 454 s~~~d~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~ 515 (1086)
+++.|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence 999999999999998 77777 774 4899999999965 66 999999999999999999988
Q ss_pred eEEecC---C---CCceEEEEEecCCCEEEEEeeCCCCc---eeEEEEeCCCCeeeeEEec-------------ccccCC
Q 001396 516 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHN 573 (1086)
Q Consensus 516 ~~~~~~---~---~~~i~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~ 573 (1086)
...+.. + ...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. .
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 292 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---S 292 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---S
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---C
Confidence 888888 7 889999999999999999986 5 8899999999999999988 66 8
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc------CC-------------CCCCCCceEEEecCC------
Q 001396 574 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG------ 628 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~------ 628 (1086)
.|.+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence 99999999999999999999999999999999999988 43 014569999999998
Q ss_pred ----CEEEEEECCCcEEEEECCCC
Q 001396 629 ----TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 629 ----~~l~~~~~dg~i~iw~~~~~ 648 (1086)
++|++++.||.|++|++.++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=320.14 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=260.1
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
....|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3456889999999999999998 599999999999999999987765 77899999999999
Q ss_pred CCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCc----
Q 001396 400 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS---- 470 (1086)
Q Consensus 400 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~~---- 470 (1086)
|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999987665 343 888999999999999 88889888 999999988664
Q ss_pred -------eeEEeecCCc--ceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 471 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 471 -------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...+.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3455566766 899999965 667999999999999999998 6777788889999999999999999999
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC--------------cEEEEEcCCCee
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL 606 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~ 606 (1086)
++. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.
T Consensus 236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 986 77899999999999888873 3 6899999999999999999888 899999999999
Q ss_pred EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
+..+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99988664 469999999999999999999999999998653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=312.91 Aligned_cols=293 Identities=20% Similarity=0.272 Sum_probs=257.1
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.++.++|.+|.+.|++++| |++++ |++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 4677889999999999999 99984 89999999999999988876654 557899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999877655555578899999999999 556 799999999999999 7888889999
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999763 557999999999999999 4455556665 788999999999999 777765 778999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.+++.+..+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~ 285 (313)
T 3odt_A 213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS 285 (313)
T ss_dssp TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence 9999999999887 899999999999 69999999999999999999999988664 3689999999998 667999
Q ss_pred CCcEEEEECCCCCeee
Q 001396 637 ENRIKILETPESNSVD 652 (1086)
Q Consensus 637 dg~i~iw~~~~~~~~~ 652 (1086)
||.|++|++.+++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999775544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=323.30 Aligned_cols=300 Identities=12% Similarity=0.209 Sum_probs=251.0
Q ss_pred ccceeeeeccCCCCceEeeecCCCceEEEEEec---cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccE
Q 001396 317 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 393 (1086)
Q Consensus 317 p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 393 (1086)
|....+.+.+|.+.|.+++|+|++++++++|+. ||.|+|||+.+++..... ..+|...|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v 68 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI 68 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence 445566778999999999999999878888887 999999999998765431 22588999
Q ss_pred EEEEECCC---CCEEEEEeCCCEEEEEEecCCC-ccccceEeccccccEeEEE------ecCCCCcEEEEEEeCCCcEEE
Q 001396 394 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 394 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~------~s~d~~~l~l~s~~~d~~i~i 463 (1086)
.+++|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v 143 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV 143 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence 99999999 7999999999999999999887 333 6789999999995 578898 8999999999999
Q ss_pred EeCCCCc-eeEEeecCCc----ceEEEeec--ccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec---
Q 001396 464 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--- 533 (1086)
Q Consensus 464 wd~~~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--- 533 (1086)
||+.+++ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++.+.... ..+...+.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence 9999987 7888876665 78888842 245778999999999999999998876444 55677999999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe-----cccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCC---
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV--- 604 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~--- 604 (1086)
+++++++++. ++.|++||+++++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 9999999976 7789999999887776665 665 8999999999998 7999999999999999854
Q ss_pred ----------------eeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCcEEEEECCCCC
Q 001396 605 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 649 (1086)
Q Consensus 605 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 649 (1086)
+.+..+..+ ...|.+++|+|++++|+ +++.|+.|++|++.+..
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 345555555 45699999999999998 79999999999998653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=325.74 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=270.8
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ ++ ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887533 355579999999999999999999987665 678999999999998 45 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+++....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 358999999999999999999999999999999999998 7889999886
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.|++||+.+++.+..+.+|. ..|.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 6789999999999999998887 89999999 788999999999999999999999988876543 4555555
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 626 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998765433322110
Q ss_pred eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCce
Q 001396 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 785 (1086)
Q Consensus 706 vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 785 (1086)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEE-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 786 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 786 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
..|...|.+++++ +.++++++ ||.|++||+.+++.+..+ ..+...|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155567777774 56788877 788999999999888887 46778999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001396 860 ST----ILIYNARS 869 (1086)
Q Consensus 860 g~----v~iwd~~~ 869 (1086)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=342.25 Aligned_cols=350 Identities=10% Similarity=0.047 Sum_probs=242.8
Q ss_pred CCccEEEEEECCCC---------CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC
Q 001396 389 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 459 (1086)
Q Consensus 389 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~ 459 (1086)
+.+.|.+|+|+|++ ++||+|+.++. + ...+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 56899999999987 79999986642 0 01368888 799999999
Q ss_pred cEEEEeCCCCcee----EEeecCCcceEEEeeccc----CCccEEEEEEcCCeEEEEEcCCCce-----------eEEec
Q 001396 460 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 520 (1086)
Q Consensus 460 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~ 520 (1086)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887753 456778899999999886 3467999999999999999976542 23567
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEecccccCCceEEE--EEecCC-CEEEEEECCCcE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 596 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i 596 (1086)
.+...|.+++|++++ .|++|+. |+.|++||++++. +...+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999864 7888876 7889999999774 445677877 899999 578887 899999999999
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecc
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 676 (1086)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999988766665443222478999999999999999999999999987765544443
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
|...|.+++|+|+|+.+++++.||+|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 455666677777777777777777777776
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEcc-CceEEEEEcC
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 835 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~ 835 (1086)
.....+ ....+. ....+...+..++|+|+++.+.. .+.+.+|+.. ++..+..+.+
T Consensus 426 ~~~~~~---------------~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRLL---------------HGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSSTT---------------TCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred chHhhc---------------cccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence 532210 000000 00002224668899999985533 2233344433 5677888999
Q ss_pred CCCCeEEEEEcCCC---CCEEEEEeCCCeEEEEEcCC
Q 001396 836 PSPTATSLAFNPHD---NNVIAIGMDDSTILIYNARS 869 (1086)
Q Consensus 836 ~~~~i~~l~~s~~d---~~~lasg~~dg~v~iwd~~~ 869 (1086)
|...|.+++|+| + +.++|+|+.||.|+||++..
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 6 45999999999999999873
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=322.41 Aligned_cols=344 Identities=15% Similarity=0.201 Sum_probs=272.5
Q ss_pred eEEecCCCCce-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 516 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 516 ~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
...+..|...+ .++.+ +++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++ .+++|+.||
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTS
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCC
Confidence 34566676664 54444 6789999986 7789999999999999999888 999999999987 999999999
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEe--cCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCc
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 672 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 672 (1086)
+|++||+.+++.+..+..+. ..|.+++|+ ++++++++++.|+.|++||+.+............
T Consensus 184 ~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------------- 248 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD------------- 248 (464)
T ss_dssp CEEEEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-------------
T ss_pred CEEEEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-------------
Confidence 99999999999999888664 468999998 5789999999999999999987643322110000
Q ss_pred eeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecccee
Q 001396 673 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 752 (1086)
Q Consensus 673 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 752 (1086)
...+.+.+++...+
T Consensus 249 ----------------------------------------------------------~~~~~~~~~~~~~~-------- 262 (464)
T 3v7d_B 249 ----------------------------------------------------------YPLVFHTPEENPYF-------- 262 (464)
T ss_dssp ----------------------------------------------------------SSEEESCGGGCTTE--------
T ss_pred ----------------------------------------------------------cceEeeccCCCeEE--------
Confidence 00000111110000
Q ss_pred EEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEE
Q 001396 753 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL 831 (1086)
Q Consensus 753 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~ 831 (1086)
... +. +|...+.++ ++++.++++++ ||.|++||+.+++.+.
T Consensus 263 --------------------------------~~~--~~--~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 263 --------------------------------VGV--LR--GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp --------------------------------EEE--EC--CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred --------------------------------EEE--cc--CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 000 00 256666655 68899999998 7999999999999999
Q ss_pred EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 832 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 832 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.+.+|...|.+++|+| +++++++|+.||.|++||+.+++++..+.+|...|.+++|+ +++|++++.||.|++||+.+
T Consensus 305 ~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 9999999999999999 89999999999999999999999999999999999999997 58999999999999999998
Q ss_pred CceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 912 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
+.... ..... ..+..++|++++++++++.|+.|++||+.+++.+.....+|...|.+++|+ ++.++++++
T Consensus 382 ~~~~~----~~~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~ 451 (464)
T 3v7d_B 382 YSRKF----SYHHT-----NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE 451 (464)
T ss_dssp CCEEE----EEECT-----TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred Cceee----eecCC-----CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence 65322 11111 257789999999999998899999999999999988777899999999997 445566666
Q ss_pred CCCcEEEEEc
Q 001396 992 VDGTLSIHEA 1001 (1086)
Q Consensus 992 ~Dg~v~vWd~ 1001 (1086)
.||.+.+|-+
T Consensus 452 ~~g~~~i~~l 461 (464)
T 3v7d_B 452 KDGQSFLEIL 461 (464)
T ss_dssp ETTEEEEEEE
T ss_pred eCCeEEEEEe
Confidence 7776665543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.25 Aligned_cols=295 Identities=16% Similarity=0.218 Sum_probs=248.4
Q ss_pred eeeccCCCCceEeeecCC---CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 322 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spd---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence 345599999999999984 44456666667899999999887765311 1113347889999999
Q ss_pred CCC----CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 399 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 399 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
+|+ |++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| +++ +|++++.|+.|++||+.+++.+.
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~ 152 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA 152 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence 999 6799999999999999999987655 5779999999999999 777 89999999999999999999998
Q ss_pred Ee---ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe----------------------------cCC
Q 001396 474 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP 522 (1086)
Q Consensus 474 ~~---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----------------------------~~~ 522 (1086)
.+ .+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+
T Consensus 153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 88 78999999999965 6789999999999999999876543322 237
Q ss_pred CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--------------eeEEecccccCCceEEEEEecC--CCE
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ 586 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~ 586 (1086)
...|.+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM 301 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence 8899999998 778998876 77899999988744 66677766 88999999999 999
Q ss_pred EEEEECCCcEEEEEcCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 587 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
|++++.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999875 44466666545679999999999999999999999999975
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=310.08 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=250.3
Q ss_pred ecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCCCccc--cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 386 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++... ....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 6899999999999999998765422 3346789999999999999999 899999999999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCC--CEEE
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANG--RRLF 539 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~--~~l~ 539 (1086)
+|+...+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999888888888888888754 66799999999999999987665543 456677889999998875 4566
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
+++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+. .+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---II 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eE
Confidence 6664 6789999999999999999887 899999999999999999999999999999999998887653 48
Q ss_pred ceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc
Q 001396 620 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 699 (1086)
Q Consensus 620 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 699 (1086)
.+++|+|++.++ +++.|+.|++||+.++..+..+..+..
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999988655 556789999999987765544432110
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 760 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 760 (1086)
......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237788999999999999999999999999987654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=327.86 Aligned_cols=272 Identities=12% Similarity=0.177 Sum_probs=210.8
Q ss_pred ccceeeee-ccCCCCceEeeecC-CCceEEEEEeccCcEEEEecCC---CceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 317 PKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 317 p~~~~~~l-~~h~~~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
...++..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +..... ....+|..
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~~ 112 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCSS 112 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECSS
T ss_pred cceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCCC
Confidence 35677788 89999999999999 998 599999999999999977 432110 00114899
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEec---CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
.|.+++|+|++++|++|+.||+|++||+. +++..+ .+.+| .+..+.|+|++
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------- 166 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------- 166 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS---------------------
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc---------------------
Confidence 99999999999999999999999999995 554333 33444 67777777643
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--CCCceEEEEEecCCCEEEEEeeCCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. +...|.+++|+|++++|++++.
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--- 234 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--- 234 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET---
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC---
Confidence 23334455544566888999999999999999999999888887 7789999999999999999986
Q ss_pred CceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEe----cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC------
Q 001396 547 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG------ 615 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~------ 615 (1086)
++.|++||+++++.+..+. .+. ..|.+++|+ +++.++++++.||.|++||+.+++.+..+..+..
T Consensus 235 -dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 235 -RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp -TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred -CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence 6789999999999998886 555 689999665 4677999999999999999999999988875532
Q ss_pred ------------------CCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 616 ------------------LPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 616 ------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
...|.+++|+ ++++|++++.|+.|++||+.+++
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 1224455555 44555555555555555555443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.32 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=239.6
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
..+...+|...|+|++|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|.+|+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN 173 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence 3455678999999999999654479999999999999998876543211 56899999999999
Q ss_pred C-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 400 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 400 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
| ++.+|++|+.||+|+|||++++. +........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h 249 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH 249 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence 8 78999999999999999998754 222222233455688999999999 89999999999999975 5677888999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
...|.+++|++.. ..++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++||
T Consensus 250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd 324 (435)
T 4e54_B 250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS 324 (435)
T ss_dssp SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence 9999999997653 3488999999999999998766543 33467789999999999999999986 77899999
Q ss_pred CCCCeeeeEEeccccc---CCceEEEEEecCCCEEEEEE------------CCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 556 ESEGAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
+.+++....+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~ 403 (435)
T 4e54_B 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS 403 (435)
T ss_dssp SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence 9999888777665411 11233456777777776654 34679999999999988875432 34567
Q ss_pred eE-EEecCCCEEEEEECCCcEEEEECCCCCe
Q 001396 621 RI-CFNKNGTLLAVIANENRIKILETPESNS 650 (1086)
Q Consensus 621 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 650 (1086)
++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus 404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 404 SLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 76 6999999999876 78999999998754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=313.46 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=172.3
Q ss_pred CCCCeeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 795 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999988665 6899999999999999886 778899999999 99999999855 57777777776
Q ss_pred eEE--EeccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 872 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 872 ~~~--~l~~h~~~v~~l~~spdg~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++........ ......++.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 553 4457899999999999999999999887 688899887553322 2223334443 79999999999999
Q ss_pred EE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 946 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 946 ~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||||+.|++|+|||++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 588999999999999998878899999999999999999999999999999999754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=316.42 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=247.7
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCc--eeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+..|.++|++++|+|+|+ +||+|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 58999999999999999886 4433 6689999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---e-EEeec
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG 477 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~---~-~~~~~ 477 (1086)
+++|++++.|+.|++||+.+++.... ..+..|...|.+++|+|+++ ++++++.|+.|++||+.++.. . .....
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 99999999999999999988764332 23567999999999999999 899999999999999998873 2 33367
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcC------------------CCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
|...|.+++|++ ++.+|++++.||.|++||+. .......+..+...+.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66799999999999999953 5667778888889999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC--CeeE----------
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL---------- 607 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~---------- 607 (1086)
+++. ++.|++||+.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 7789999999999999999877 899999999999877777 999999999988 5311
Q ss_pred ----------------------------EEEcCCCCCCCCceEEEe-cCC---CEEEEEECCCcEEEEECCCC
Q 001396 608 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 648 (1086)
Q Consensus 608 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 648 (1086)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1445578999866 566 99999999999999998754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=314.03 Aligned_cols=298 Identities=16% Similarity=0.234 Sum_probs=247.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
..+|.+.+.+..+++++.. +++++.|+.|+|||+.+++..... ...|...|.+++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGS 147 (401)
T ss_dssp CTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSS
T ss_pred CCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCC
Confidence 3478777666555555555 667778999999999999876541 224889999999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCceeEEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v 482 (1086)
+||+|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++++.|+.|++||+. .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999987655 677999999999994 45 89999999999999999 567788899999999
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999965 6789999999999999999999999999999999999999998765554331 123778999999999998
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcE
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 640 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 640 (1086)
..+.. . ..+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|
T Consensus 298 ~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 298 NTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 88864 3 5899999999999999954 8999999999998776665433445679999999999999999999999
Q ss_pred EEEECCCCCeeeec
Q 001396 641 KILETPESNSVDAA 654 (1086)
Q Consensus 641 ~iw~~~~~~~~~~~ 654 (1086)
++|++.+++.+...
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999988665543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=309.64 Aligned_cols=288 Identities=12% Similarity=0.143 Sum_probs=259.5
Q ss_pred eeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 384 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
..+.+|...|.+++|+|+|++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3488999999999999999999999999999999999987655 6789999999999999999 8999999999999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCc-----------eeEEecCCCC--c
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLG-----------ARVDYDAPGL--G 525 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~-----------~~~~~~~~~~--~ 525 (1086)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+.... ....+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999988 889999999955 67899999999 999999987654 2233344444 8
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 77899999998 78888888877 89999999999999999999999999999999
Q ss_pred eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--------------cEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 605 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 605 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++|+
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 3589999999999999999988 89999999999999999999999999996
Q ss_pred CceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 671 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
|+++++++++.|+.+++|++..
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECcc
Confidence 7889999999999999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=325.84 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=227.4
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC--ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+..|.++|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence 345667999999999998 5999999999999999987 44432 7789999999999999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc---eeEEeec-
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG- 477 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~---~~~~~~~- 477 (1086)
+++||+++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999999999999873444446778999999999999999 79999999999999999887 4778888
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC------------------CceeEEecCCCCceEEEEEecCCCEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
|...|.+++|++ ++.+|++++.|+.|++||+.. ......+ .+...|.+++|+|++++|+
T Consensus 145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 999999999965 678999999999999999853 3334445 7888999999999999999
Q ss_pred EEeeCCCCceeEEEEeCCCCee----eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe----------
Q 001396 540 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------- 605 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------- 605 (1086)
+++. ++.|++||+.+++. +..+.+|. ..|.+++|+|++++|++++.++.+ +|+.....
T Consensus 222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T 3dwl_C 222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG 293 (377)
T ss_dssp EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence 9986 77899999999987 77888877 899999999999988888766655 66654211
Q ss_pred -----------------------------eEEEEcC-----------CCCCCCCceEEEecC-CC---EEEEEECCCcEE
Q 001396 606 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK 641 (1086)
Q Consensus 606 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~ 641 (1086)
....... ..+...|.++++.+. +. .+++++.||.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 0000000 014456888886653 33 699999999999
Q ss_pred EEEC
Q 001396 642 ILET 645 (1086)
Q Consensus 642 iw~~ 645 (1086)
+||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=314.88 Aligned_cols=299 Identities=11% Similarity=0.118 Sum_probs=232.2
Q ss_pred CCceEeeecCCCceEEEEEeccC-------cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVG-------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
-+|++++|+|||+ +||+|+.|. .|+||++..+.......+ .......+.+|+..|.+++++
T Consensus 15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~-- 82 (365)
T 4h5i_A 15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS-- 82 (365)
T ss_dssp SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--
T ss_pred CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--
Confidence 3899999999998 688887543 599999987654321111 111222377899999888774
Q ss_pred CCEEEEE-----------eCCCEEEEEEecCCCccccc-e-----EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 402 GSLLGVA-----------YSKHIVQLYAYHGGSDARQQ-L-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 402 g~~las~-----------~~d~~i~iwd~~~~~~~~~~-~-----~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+..+++| +.|+.+++|++.++...... . ....+...+.+++|||||+.+.+++++.|++|+||
T Consensus 83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence 5566665 35778999999876432111 1 12234566899999999996556677789999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE--ecCCCCceEEEEEecCCCEEEEEe
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
|+++++++..+. |...|.+++|+ +||.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++++++
T Consensus 163 d~~~~~~~~~~~-~~~~V~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 163 DPSDLTEKFEIE-TRGEVKDLHFS--TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEEC--TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred ECCCCcEEEEeC-CCCceEEEEEc--cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999886 78889999995 477899998855 566666666665543 345677899999999999999998
Q ss_pred eCCCCceeEEEEeCCCCee----eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEE-cCCCCCC
Q 001396 543 TSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLP 617 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~ 617 (1086)
.++.....+++|+...+.. ...+.+|. ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred cCCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 8666566889999877654 33455555 89999999999999999999999999999999999876 445 45
Q ss_pred CCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 618 ENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.|.+++|+|||++|++++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 6999999999999999999999999999754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.81 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=240.9
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcC-----------CCCC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 616 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 616 (1086)
..+++|+...++....+.+|. ..|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 346778888888888888877 9999999999 999999999999999999998765443321 1244
Q ss_pred CCCceEEEec-CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 617 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 617 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
..|.+++|+| ++.++++++.||.|++||+.++.....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5689999999 77899999999999999987653222111
Q ss_pred eeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCc
Q 001396 696 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 775 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 775 (1086)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCceeeecCCCCCCCCCeeEEEeec---CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC
Q 001396 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 776 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~---dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 851 (1086)
+...+.++++++ ++.++++++ +|.|++||+.+++.+..+..|...|.+++|+| +++
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 122333444444 445777776 68899999999988899999999999999999 665
Q ss_pred -EEEEEeCCCeEEEEEcCCce-eEEEe---------------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 001396 852 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 852 -~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 79999999999999998765 33444 57899999999999999999999999999999998664
Q ss_pred eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 915 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
.............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|++++|+|||++|++++.||
T Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 32111111111111 122333344456666668999999999999998887 568999999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 995 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 995 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
.|++||+.+++.+....... ....+.|.....+...+.+|.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998875443111 1122333345677788899999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=311.01 Aligned_cols=291 Identities=16% Similarity=0.252 Sum_probs=245.0
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
..+.|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 47889999875 588876 8999999999998775422 567889999999999999999999
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeecCCcceEEEeec
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 488 (1086)
.||+|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 678999999998885 45 8999999999999998864 4567889999999999985
Q ss_pred ccCCccEEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecCCCE-EEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 489 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 489 ~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
+ ++.++++++.|+.+++|+...++. ......+...|.+++|+|++.. +++++. ..|+.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4 678999999999999999987653 4566778889999999997654 444443 337899999999999998
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
.+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+.+|. ..|.+++|+|+|++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 78999999999999999998764 4699999999999999999999999
Q ss_pred EEECCCCCeeeecccc
Q 001396 642 ILETPESNSVDAAGVL 657 (1086)
Q Consensus 642 iw~~~~~~~~~~~~~~ 657 (1086)
+||+.+..+......+
T Consensus 390 iWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 390 LWRCFELDPARRRERE 405 (420)
T ss_dssp EECCSCSSCC------
T ss_pred EEECCCCCccchhhhc
Confidence 9999876555444433
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=300.07 Aligned_cols=254 Identities=13% Similarity=0.157 Sum_probs=211.6
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC--ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.+.|.+++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~s 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDWA 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEEC
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEec
Confidence 45789999999999999998 5999999999999999754 33332 78999999999998
Q ss_pred CC--CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce--eE
Q 001396 400 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--TY 473 (1086)
Q Consensus 400 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~~--~~ 473 (1086)
|+ |++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ..
T Consensus 63 ~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 63 HPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp CGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred CCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeee
Confidence 74 899999999999999999987522 23357789999999999998 77 899999999999999987642 46
Q ss_pred EeecCCcceEEEeecccC-----------CccEEEEEEcCCeEEEEEcCCCc----eeEEecCCCCceEEEEEecCC---
Q 001396 474 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG--- 535 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d~--- 535 (1086)
.+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 778999999999998752 35799999999999999998766 445778899999999999995
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++|++++. |+.|++||+.++.. .........+...|.+++|+|++++|++++.||.|++|+..
T Consensus 220 ~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 220 SYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEEEC----CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 78999886 77899999887431 11121111224789999999999999999999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=314.15 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=243.1
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEecCC-CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCE
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 630 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 630 (1086)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 44555666777788877 999999999999 899999999999999999998888887655566799999999 7899
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|++++.|+.|++||+.+. .+..+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998732 1110000
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecC
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 790 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 790 (1086)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001396 791 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 791 ~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~ 868 (1086)
..++...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001456788889999999998887 689999998 5778888889999999999999 777 99999999999999999
Q ss_pred C----ceeEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeec--cCCCcc-------CCCCce
Q 001396 869 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET 934 (1086)
Q Consensus 869 ~----~~~~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~ 934 (1086)
+ +..+..+ +|.+.|.+++|+| ++++|++++.|+.|++||+.+++......... ...+.. ..+.+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5666666 6999999999999 99999999999999999998866432211110 001111 002344
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCccceeccccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC
Q 001396 935 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~ 1003 (1086)
.++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666666666 2257899999999999998875532 467788889999999999997 99999999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=311.92 Aligned_cols=344 Identities=12% Similarity=0.076 Sum_probs=256.0
Q ss_pred cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 520 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
..+..+|.+++|+|+++++++++. ++.|++||+.+++ .+..+.+|. ..|.+++|+|+++++++++.||.|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAY 77 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEE
Confidence 457789999999999999999875 7789999999987 888888877 8999999999999999999999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
+||+.+++.........+...+.+++|+|++++|++++.|+.|++|++...........
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------------------- 136 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH--------------------- 136 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---------------------
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee---------------------
Confidence 99999998776665545556799999999999999999999999999876532111000
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
....|...|.+++|+|++..+++++.||.+++|++
T Consensus 137 ---------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 137 ---------------------------------------------IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp ---------------------------------------------ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ---------------------------------------------eecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 00114556777777777777777777777777765
Q ss_pred cCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC
Q 001396 758 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS 837 (1086)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~ 837 (1086)
..... .... .. .+.+. ...+++.+..+..|.
T Consensus 172 ~~~~~-----------------~~~~-----------~~--------~~~~~-------------~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 172 YIKEV-----------------EERP-----------AP--------TPWGS-------------KMPFGELMFESSSSC 202 (372)
T ss_dssp CCTTT-----------------SCCC-----------CC--------BTTBS-------------CCCTTCEEEECCCCS
T ss_pred ccccc-----------------cccc-----------cc--------ccccc-------------ccchhhheEecCCCC
Confidence 43210 0000 00 00000 134567778888899
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC--Ccee
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--WGIQ 915 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~--~~~~ 915 (1086)
..|.+++|+| ++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|+++ .|+.|++|++.. +.
T Consensus 203 ~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~-- 278 (372)
T 1k8k_C 203 GWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK-- 278 (372)
T ss_dssp SCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE--
T ss_pred CeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce--
Confidence 9999999999 89999999999999999999999999999999999999999999988877 899999999987 43
Q ss_pred eeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEE---EcCCccce------eccccCCccCEEEEEEe-CCC-
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY---EAEELTCL------KQWFPISSVPISQATFS-CDC- 984 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw---d~~~~~~~------~~~~~~h~~~v~~l~fs-~dg- 984 (1086)
...+.....+.. . ..+....+.+| +.. +... ..+..+|...|++++|. ++|
T Consensus 279 -~~~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~ 340 (372)
T 1k8k_C 279 -LSFGGRLDVPKQ------S----------SQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 340 (372)
T ss_dssp -EEECCCCCCC------------------------CHHHHHHHCCCC-C---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred -EEEeeccCcccc------c----------hhhhcchhhhhhhcccc-cccccCccccccccccccCCcceeEEecCCCc
Confidence 122222222111 0 11122334444 322 2222 33345899999999855 677
Q ss_pred --CEEEEEECCCcEEEEEcCCCcee
Q 001396 985 --RMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 985 --~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
.+|++++.||+|++|++.+++.+
T Consensus 341 ~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 341 KCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp SCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ceeeEEEecCCCceEEEEecChhHh
Confidence 99999999999999999886543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=323.72 Aligned_cols=303 Identities=12% Similarity=0.113 Sum_probs=231.0
Q ss_pred eeEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEECCCc
Q 001396 562 KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENR 639 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~ 639 (1086)
.....+|. ..|++++|+| +++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+
T Consensus 112 ~~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred cccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 34445555 7899999999 46689999999999999999887766666556667899999998 7899999999999
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
|++||+.++... .+
T Consensus 189 v~iwd~~~~~~~-~~----------------------------------------------------------------- 202 (435)
T 4e54_B 189 TRLQDFKGNILR-VF----------------------------------------------------------------- 202 (435)
T ss_dssp EEEEETTSCEEE-EE-----------------------------------------------------------------
T ss_pred EEEeeccCCcee-EE-----------------------------------------------------------------
Confidence 999997643110 00
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
...+ .+...+
T Consensus 203 ----------------~~~~------------------------------------------------------~~~~~~ 212 (435)
T 4e54_B 203 ----------------ASSD------------------------------------------------------TINIWF 212 (435)
T ss_dssp ----------------ECCS------------------------------------------------------SCSCCC
T ss_pred ----------------eccC------------------------------------------------------CCCccE
Confidence 0000 133456
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE---
Q 001396 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--- 875 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--- 875 (1086)
.+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|++||+.+++....
T Consensus 213 ~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~ 291 (435)
T 4e54_B 213 CSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY 291 (435)
T ss_dssp CCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred EEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence 7789999999999998 7999999986 4566778889999999999995556899999999999999988765433
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-------
Q 001396 876 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------- 948 (1086)
Q Consensus 876 l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------- 948 (1086)
..+|...|++++|+|||++|++++.||.|+|||+.+++........... . .....+....|+|++.+++++
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-H-FQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC-C-CSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc-c-cccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 3579999999999999999999999999999999987643321111100 0 000123345566666666553
Q ss_pred ------eCCeEEEEEcCCccceeccccCCccCEEEE-EEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 949 ------HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 949 ------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
.++.|++||..+++.+..+..+|...|.++ +|+|||.+|++|+ |++|+||++.+++..
T Consensus 370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999887 6999999999875 889999999988754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=312.47 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.3
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc------eeEEecCCCCceEEEEEecC----C---CEE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 538 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----~---~~l 538 (1086)
...+.+|.+.|++++|++ .+|++++.||.|++||+...+ ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999965 599999999999999999987 67788899999999999999 9 999
Q ss_pred EEEeeCCCCceeEEEEeCCCCee-----eeEEeccccc--CCceEEEEEe----cCCCE-EEEEECCCcEEEEEcCC---
Q 001396 539 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 603 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~--- 603 (1086)
++++. ++.|++||+.+++. +..+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99886 67799999998887 7888877322 3799999999 99999 99999999999999998
Q ss_pred ---CeeEE-----EEcC-----CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 604 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 604 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
++.+. .+.. ..+...+.+++|+|++ ++++++.|+.|++||+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66555 5543 3334568999999999 999999999999999875432211110
Q ss_pred CceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc
Q 001396 671 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 750 (1086)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 750 (1086)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCC---CCCeeEEEeecCCCEEEEEe-C---CeEEEEE
Q 001396 751 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI 823 (1086)
Q Consensus 751 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~v~~l~~s~dg~~l~~~~-d---g~i~iwd 823 (1086)
. .+| ...|.+++|+|++++|++++ + |.|++||
T Consensus 226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 0 014 66788999999999999887 6 8999999
Q ss_pred ccCceEEEEEcC-------------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec------cc-----
Q 001396 824 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH----- 879 (1086)
Q Consensus 824 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h----- 879 (1086)
+.+++.+..+.. |...|.+++|+| ++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 999999999988 999999999999 89999999999999999999999999999 88
Q ss_pred ----------cCCeEEEEEeCCC----------CEEEEEeCCCcEEEEECCCC
Q 001396 880 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 880 ----------~~~v~~l~~spdg----------~~l~s~s~dg~i~iwd~~~~ 912 (1086)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999874
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=331.96 Aligned_cols=211 Identities=18% Similarity=0.303 Sum_probs=184.3
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-----ceeEEeecCCcceEEEeecccCCccEEEEEEcCCe
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 504 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 504 (1086)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 57799999999999998654 8999999999999998764 34578899999999999954 7789999999999
Q ss_pred EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCC
Q 001396 505 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 505 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999999999999999999999999999999986 7789999987655444433333345889999999987
Q ss_pred --CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 585 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 585 --~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 579999999999999999999998888664 469999999999999999999999999988653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=312.21 Aligned_cols=317 Identities=11% Similarity=0.030 Sum_probs=248.2
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
+.-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-- 64 (588)
T ss_dssp CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence 34456999999999998 699999999999 7555432 45899999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc----
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA---- 480 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---- 480 (1086)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |..
T Consensus 65 -----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 4555555554332211 12 5688999999999999 799999999999999544 667777 766
Q ss_pred -ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-------eEEe----cCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 481 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 481 -~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.|.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. |
T Consensus 130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D 201 (588)
T 2j04_A 130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N 201 (588)
T ss_dssp TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence 499999954 788999999999999999998753 3454 5567799999999999 666654 7
Q ss_pred eeEEEEeCCCCeee---eEEe-cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 549 SFLVEWNESEGAIK---RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~---~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
+.|++||+.++... +++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++......+ +...+..++|
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~ 273 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL 273 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence 78999999987743 4564 554 899999999 58888887 69999999998887544433 3457999999
Q ss_pred --ecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 625 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 625 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+|++..+++++.+|+ ++|.... +++ +|++..+++. |+
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~ 312 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK 312 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence 999999999999999 9999771 223 4777777775 89
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeec
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 748 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 748 (1086)
++++|+..... +. ...+...|.+++|+|||+.+++++.
T Consensus 313 ~v~lW~~~g~~------l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 313 KFKKWSTIWNE------FN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHTTTTTTS------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEEECCCCc------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 99999864322 11 1113567999999999998887765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=297.21 Aligned_cols=252 Identities=17% Similarity=0.298 Sum_probs=213.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~i 463 (1086)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++. .+....+.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 77899999999999999999999999999999997542 1233478899999999999864 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecC-----
Q 001396 464 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 534 (1086)
Q Consensus 464 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 534 (1086)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEeeCCCCceeEEEEeCCCCe----eeeEEecccccCCceEEEEEecCC---CEEEEEECCCcEEEE
Q 001396 535 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 599 (1086)
Q Consensus 535 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw 599 (1086)
+++|++++. ++.|++||+++++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 7789999998765 556777777 899999999984 789999999999999
Q ss_pred EcCCCe--e-EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 600 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 600 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
|+.++. . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998743 1 22332233345689999999999999999999999999763
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=291.64 Aligned_cols=297 Identities=16% Similarity=0.262 Sum_probs=243.9
Q ss_pred Cccceeeeec--cCCC--CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 316 FPKTVAQTLI--EGSS--SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 316 ~p~~~~~~l~--~h~~--~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
+|....++|. +..+ ..++|+||+++ +||+|. |++|+|||+.+|+.+.... +.+|..
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~ 68 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGE 68 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTC
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCC
Confidence 3444445554 3332 35789999987 578775 8999999999999876422 567889
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-c
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S 470 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~ 470 (1086)
.|.+++|+|+|++||+|+.||+|++||+++++.++ .+.+|...+.++.+. +. .+++++.++.+++|+..++ .
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSC
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCce
Confidence 99999999999999999999999999999997665 677999988876654 55 7999999999999998876 4
Q ss_pred eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 471 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 471 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
.+..+.+|...+..+.+.+ ++.++++++.||.|++||+.+++. ......+...+.+++++|++..++.... +.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~ 218 (318)
T 4ggc_A 142 HVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GT 218 (318)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CT
T ss_pred eEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cC
Confidence 5677889999999999854 667999999999999999987653 3455667788999999998765553322 23
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
.++.|++||............. ..+..+.|+|+++.+++++ .|+.|++||+.+++++..+..|. ..|.+++|
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~ 292 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTM 292 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEE
T ss_pred CCCEEEEEecccccccccccce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEE
Confidence 3778999999988776665543 5899999999999988765 79999999999999999998764 46999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC
Q 001396 625 NKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
+|+|++|++++.||+|++||+.+.
T Consensus 293 spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 293 SPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999998754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=310.16 Aligned_cols=347 Identities=14% Similarity=0.129 Sum_probs=247.8
Q ss_pred ceeeeeccCCCCceEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.....+.+|.+.|++++|+| +|+ +||+|+.||.|+|||+.+++.......... .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence 45567789999999999999 998 599999999999999999876653221100 0000011246999999999
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC---CCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 398 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 398 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
|+| ++.+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 78899999999999999999987554 22 47788999999884 44 78999999999999999999999
Q ss_pred EeecCCcceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCc-eeEEe---------------cCCCCceEEEEEecCCC
Q 001396 474 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLG-ARVDY---------------DAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~-~~~~~---------------~~~~~~i~~~~~s~d~~ 536 (1086)
.+.+|...|.+++|++ ++. ++++++.||.|++||++... ....+ ..+...|.+++|+|+++
T Consensus 181 ~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 181 ILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 9999999999999965 444 69999999999999998765 23333 45677899999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc--cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus 259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9999986 67799999999887655543321 11222223333445677788889999999999999999998664
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
..|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ......
T Consensus 335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~ 388 (408)
T 4a11_B 335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA 388 (408)
T ss_dssp --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence 46999999999999999999999999999988766544322211 1111 123445
Q ss_pred ceeccccCccceeeee
Q 001396 695 EISVEAENKSEVEKPL 710 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~ 710 (1086)
+.+.+.++.+++|+..
T Consensus 389 ~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 389 WSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------
T ss_pred ecccCccCceeecCCc
Confidence 5677788999999753
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.98 Aligned_cols=331 Identities=10% Similarity=0.035 Sum_probs=249.3
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
.-...|.+++|+|||+++|+++. |++|+ |...++.+ .+|. ..|.+++|+|+| .++.+.+|+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~l---~gh~---~~v~~V~FsPdg-------~~~~~~~~~ 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKDI---NCNS---KNLFHVKEFPLE-------FENKLDFEL 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSCC---SSBG---GGTEEEEEECCC-------CCCTTTTSC
T ss_pred HhhccEEEEEECCCCCEEEEEcC----Cceee--ccccccee---cCCC---ccEEEEEECCCC-------CcceEEEEe
Confidence 34468899999999999999986 77888 75555443 5666 899999999998 455555555
Q ss_pred cCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
.+. ...+.... ...|.+++|||+|.+||+++.||.|++|+... .+..+. |...+
T Consensus 74 ~~~---~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~------------------- 127 (588)
T 2j04_A 74 AQQ---NGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL------------------- 127 (588)
T ss_dssp CCS---SCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS-------------------
T ss_pred CCC---ceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc-------------------
Confidence 432 22232122 45799999999999999999999999999543 222111 11100
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 760 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 760 (1086)
....+.+++|||||+.|++++.||+|++|++..+
T Consensus 128 ----------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 128 ----------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp ----------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred ----------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 1345889999999999999999999999987653
Q ss_pred ccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceE---EEEE-cCC
Q 001396 761 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPP 836 (1086)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~-~~~ 836 (1086)
.... +++ ..+.+......+|...|.+++|+||| +++++.|++|++||+.++.. .+++ .+|
T Consensus 162 ~l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 162 SENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp TTTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred cccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccc
Confidence 2100 000 00122211122488899999999999 55555689999999988773 3566 478
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEECCCCce
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~--spdg~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
...|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|+++++||+ ++|..+.
T Consensus 226 ~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--- 297 (588)
T 2j04_A 226 RRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--- 297 (588)
T ss_dssp SSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---
T ss_pred cCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---
Confidence 8899999999 37899887 699999999988874444489999999999 999999999999999 9999872
Q ss_pred eeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 915 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 ---------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ---------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ---------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988775 9999999976554 332 333 77899999999999999886
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=304.44 Aligned_cols=294 Identities=17% Similarity=0.223 Sum_probs=246.5
Q ss_pred eeecCCCccEEEEEECCC----CCEEEEEeCCCEEEEEEecCCCccccceEec--cccccEeEEEecCC----CCcEEEE
Q 001396 384 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI 453 (1086)
Q Consensus 384 ~~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d----~~~l~l~ 453 (1086)
.+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+.....+. .|...|.+++|+|+ ++ +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346789999999999984 4566666677799999999887665443332 26688999999999 55 899
Q ss_pred EEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe---cCCCCceEEEE
Q 001396 454 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA 530 (1086)
Q Consensus 454 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~ 530 (1086)
+|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++++....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 9999999999999999999999999999999999652 5679999999999999999998888887 67888999999
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec-------------------------ccccCCceEEEEEecCCC
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~ 585 (1086)
|+|+++++++++. ++.|++||+++++....+.. ...+...|.+++|+ ++
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 9999999999986 67899999998776544432 00133889999999 67
Q ss_pred EEEEEECCCcEEEEEcCCCee--------------EEEEcCCCCCCCCceEEEecC--CCEEEEEECCCcEEEEECCCCC
Q 001396 586 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
++++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999999987643 5666655 346899999999 9999999999999999999875
Q ss_pred ee----eecccc--ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 650 SV----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 650 ~~----~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.. ..+.+| ...|.+++|+ |+++++++++.|+.|++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 43 366666 6889988886 788999999999999999964
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=312.34 Aligned_cols=301 Identities=13% Similarity=0.203 Sum_probs=233.9
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC------------ccE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV 393 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 393 (1086)
.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCce
Confidence 4677999999999998 5999999999999999987631100000 000112266888 889
Q ss_pred EEEEECCCC--CEEEEEeCCCEEEEEEecCCCcccc------------------------------------c-eEeccc
Q 001396 394 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDARQ------------------------------------Q-LEIDAH 434 (1086)
Q Consensus 394 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~~------------------------------------~-~~~~~h 434 (1086)
.+++|+|++ .+|++++.|++|++||+.+++.... . ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 8999999999999999987443100 0 113589
Q ss_pred cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC-CceeE-------EeecCCcceEEEeecccCCc-cEEEEEEcCCeE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 505 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i 505 (1086)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 54 799999999999
Q ss_pred EEEEcCCCce----eEEecCCCC------------ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEecc
Q 001396 506 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 568 (1086)
Q Consensus 506 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 568 (1086)
++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998886 677777775 899999999999999886 36799999997 8888899887
Q ss_pred cccCC------------ceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----------------------
Q 001396 569 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 613 (1086)
Q Consensus 569 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------- 613 (1086)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 614 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 614 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.....|..++|+|++++||+++.++ +.+|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998875 7777644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=300.16 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=206.4
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 400 (1086)
.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++..... ..+.+|...|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence 34679999999999999998 599999999999999988753221 11779999999999987
Q ss_pred -CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce---eEE
Q 001396 401 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 474 (1086)
Q Consensus 401 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~~---~~~ 474 (1086)
++++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999987422 23357799999999999998 66 799999999999999987642 355
Q ss_pred eecCCcceEEEeecccC---------------CccEEEEEEcCCeEEEEEcCCC---ceeEEecCCCCceEEEEEecCC-
Q 001396 475 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANG- 535 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~d~- 535 (1086)
+.+|...|.+++|++.. ++.+|++++.|++|++||++.. .....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 1468999999999999999755 3455678899999999999987
Q ss_pred ---CEEEEEeeCCCCceeEEEEeCCCCe----eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001396 536 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602 (1086)
Q Consensus 536 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 602 (1086)
++|++++. |+.|++||+.+.. ....+..|. ..|.+++|+|++++|++++.|++|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 7789999987631 223445555 899999999999999999999999999976
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=289.24 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=247.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|.+.|.+++| |++++||+|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP 87 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence 7899999999999 999999999999999999998876544 5678999999999999999 899999999999999
Q ss_pred CCCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEec-CCCEEEEE
Q 001396 466 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSC 541 (1086)
Q Consensus 466 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~ 541 (1086)
+... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++|+| ++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 8754 667888999999999998 346999999999999999 6667778888999999999998 99999999
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEec-ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
+. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..+.
T Consensus 162 ~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~ 229 (313)
T 3odt_A 162 SA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY 229 (313)
T ss_dssp ET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEE
T ss_pred EC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEE
Confidence 86 67799999 5666677776 44 8999999999987 9999999999999999999999988664 4699
Q ss_pred eEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 621 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
+++|+|++ .+++++.||.|++||+.+++....+..|...+.+++++ |+++ +++++.
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~~ 285 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGSS 285 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEET
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEeC
Confidence 99999999 58899999999999999999999999999999999996 5666 667899
Q ss_pred cCccceeeeeecC
Q 001396 701 ENKSEVEKPLFAR 713 (1086)
Q Consensus 701 d~~i~vw~~~~~~ 713 (1086)
|+.+++|++....
T Consensus 286 dg~i~iw~~~~~~ 298 (313)
T 3odt_A 286 DNLVRIFSQEKSR 298 (313)
T ss_dssp TSCEEEEESCGGG
T ss_pred CCcEEEEeCCCCc
Confidence 9999999987543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=300.85 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=242.1
Q ss_pred eecCCCccEEEEEECCCCCEEE-EEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCC---CCcEEEEEEeC
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 457 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d---~~~l~l~s~~~ 457 (1086)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ ++ ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 4678999999999999996555 5555 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEeCCCCc-eeEEeecCCcceEEEeecc----cCCccEEEEEEcCCeEEEEEcCCCc-eeEEecCCCC----ceE
Q 001396 458 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 527 (1086)
Q Consensus 458 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~i~ 527 (1086)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5678899999999999999999887 5666655444 788
Q ss_pred EEE----EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec---CCCEEEEEECCCcEEEEE
Q 001396 528 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 528 ~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iwd 600 (1086)
+++ |+|+++++++++. ++.|++||+++++.... ..+. ..|.+++|+| ++.++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7889999999986 67899999999987544 4444 7999999999 999999999999999999
Q ss_pred cCCCeeEEEEc---CCCCCCCCceEEEecCCC-EEEEEECCCcEEEEECCCC-------------------Ceeeecccc
Q 001396 601 MNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGVL 657 (1086)
Q Consensus 601 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~ 657 (1086)
+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+ ..+..+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 98876654443 112345699999999998 8999999999999998854 245567778
Q ss_pred ccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce-eccccCccceeeee
Q 001396 658 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 710 (1086)
Q Consensus 658 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~vw~~~ 710 (1086)
...|.+++|+ |++++++ +++.|+.+++|++.
T Consensus 321 ~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 321 TQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 8888888886 7788888 89999999999976
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=297.53 Aligned_cols=287 Identities=9% Similarity=0.055 Sum_probs=242.9
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
....+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCC
Confidence 34568999999999999998 589999999999999988772111 0014479999999999999
Q ss_pred CC-EEEEEeCCCEEEEEEe-cCCCccccceEecc--ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC---------
Q 001396 402 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--------- 468 (1086)
Q Consensus 402 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~--------- 468 (1086)
++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ .+++++.|+.|++||+.+
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence 99 9999999999999999 87753 25678 999999999999 77 899999999999999988
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-Cc--eeEEecCCCCceEEEEEec-CCCEEEEEeeC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LG--ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 544 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~--~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~ 544 (1086)
++++..+. |...|.+++|++ ++ +++++.|+.|++||++. .. .......+...+.+++|+| +++++++++.
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~- 214 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI- 214 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence 88777777 899999999964 43 99999999999999988 44 3345556777999999999 9999999986
Q ss_pred CCCceeEEEEeCCCC------eeeeEEecccc------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 545 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
++.|++|+.+.+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence 778999999887 77888887751 124899999999999999999999999999999999988876
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCc-EEEEE
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANENR-IKILE 644 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~ 644 (1086)
+. ...|.+++ |++++|++++.||. .+.+.
T Consensus 292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence 51 23578888 99999999999998 55444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=304.28 Aligned_cols=278 Identities=21% Similarity=0.312 Sum_probs=241.5
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
..+|...|.|++| +|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++| +++
T Consensus 129 ~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~ 184 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DER 184 (435)
T ss_dssp CCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSS
T ss_pred ccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCC
Confidence 3567778999887 677 599999999999999999987765 7789999999999 889
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee---EEeecCCc
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGA 480 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~ 480 (1086)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.. ..+.+|..
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred EEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence 99999999999999999987655 6789999999999974 4 7999999999999999988776 67889999
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.|.++++ ++.++++++.||.|++||+++++....+..+...+.++++ +++++++++. ++.|++||+.+++
T Consensus 258 ~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~ 327 (435)
T 1p22_A 258 AVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGA 327 (435)
T ss_dssp CEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCC
T ss_pred cEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCC
Confidence 9999998 4569999999999999999999999999999999999988 4789999886 6789999999999
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe---------eEEEEcCCCCCCCCceEEEecCCCEE
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLL 631 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l 631 (1086)
.+..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.+|
T Consensus 328 ~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l 398 (435)
T 1p22_A 328 CLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQI 398 (435)
T ss_dssp EEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCE
T ss_pred EEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEE
Confidence 999999887 89999998 78899999999999999998766 677777654 46899999 78899
Q ss_pred EEEECCCcEEEEECCCCCee
Q 001396 632 AVIANENRIKILETPESNSV 651 (1086)
Q Consensus 632 ~~~~~dg~i~iw~~~~~~~~ 651 (1086)
++++.||.|++||+.+....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EECCSSSEEEEEC-------
T ss_pred EEEeCCCEEEEEECCCCCCc
Confidence 99999999999999876443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=301.09 Aligned_cols=281 Identities=19% Similarity=0.237 Sum_probs=243.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
....|+||+++ +||+|. |++|+|||+.+|+..+.. .+.+|...|++|+|+|+|+ +|++|+.|++|++||++++++
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 46789999864 777775 899999999999865532 4567888999999999999 899999999999999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
+..+.+|...+.++++ ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 346999999999999999887554 4577889999999999999999999986 678
Q ss_pred EEEEeCCCCee----eeEEecccccCCceEEEEEecCCCEE-EE--EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 551 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 551 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
+++|+..+++. +.....+. ..|.+++|+|++..+ ++ |+.|++|++||+.++++...+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987653 34455555 899999999987654 44 3479999999999999999887654 478999
Q ss_pred EecCCCEEEEEE--CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 624 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 624 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
|+++++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ |+|+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999996 789999999999
Q ss_pred CccceeeeeecC
Q 001396 702 NKSEVEKPLFAR 713 (1086)
Q Consensus 702 ~~i~vw~~~~~~ 713 (1086)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999976443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-31 Score=296.81 Aligned_cols=294 Identities=17% Similarity=0.207 Sum_probs=243.1
Q ss_pred CccceeeeeccCCCCceEeeecCC---CceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spd---g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
.|...++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|..
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~ 87 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG 87 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence 355677888999999999999999 57 699999999999999998 444311 1667999
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEe--cCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| +++++ ++++++.|+.|++||+.++
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence 99999999999999999999999999999887543 5679999999999 88888 8999999999999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--CCCCceEEEEEecCCCE----EEEEee
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT 543 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~----l~~~~~ 543 (1086)
+.+..+..+. .+.++.+. ...+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 9999998665 56666553 2378999999999999998876554332 23446677777766654 788775
Q ss_pred CCCCceeEEEEeCCCC---eeeeEEecccc---------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 544 SKEGESFLVEWNESEG---AIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
++.|++||+... ..+..+.+|.. +...|.+++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 778999999987 56677777661 01169999999999999999999999999999999999887
Q ss_pred CCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
.+. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 313 ~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 313 QLD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 653 46999999999999999999876555543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=300.78 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=242.7
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-CCCEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 407 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 407 (1086)
....+++++|+...++++|+.||.|+|||+........ ....+.+|...|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35678999999876677789999999999966432210 0112678999999999999 9999999
Q ss_pred EeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe--ecCCcc
Q 001396 408 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP 481 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 481 (1086)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233467899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-cCCCCc-eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 482 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
|.+++|++ ++.+|++++.||.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 99999965 7789999999999999999998888877 666664 899999999999988832 223889999999987
Q ss_pred ee-eeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcCCCee-EEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 560 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 560 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
+. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .
T Consensus 256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 65 3333321 1367999999999999975 55799999999998874 445544434457999999999988764 5
Q ss_pred CCcEEEEECCCCC
Q 001396 637 ENRIKILETPESN 649 (1086)
Q Consensus 637 dg~i~iw~~~~~~ 649 (1086)
++.+++|++.++.
T Consensus 332 ~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 332 CEIARFYKLHERK 344 (402)
T ss_dssp TEEEEEEEEETTE
T ss_pred ceeEEEEEcCCCc
Confidence 6799999998753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=310.70 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=198.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCC--CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
.|.++|.+++|+|||++||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 36789999999999999999999999999999987 4443 5779999999999999999 799999999999999
Q ss_pred CCCCc---eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecC-CCCceEEEEEecCCCEE
Q 001396 466 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 466 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~-~~~~i~~~~~s~d~~~l 538 (1086)
+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987 6778889999999999965 677999999999999999998773 556666 88999999999999999
Q ss_pred EEEeeCCCCceeEEEEeCC------------------CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEE
Q 001396 539 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 600 (1086)
++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++||
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99986 6779999985 34455555 555 8999999999999999999999999999
Q ss_pred cCCCee----EEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 601 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 601 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 5666655 3468999999999999998877666 66654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=293.96 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=205.5
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 462 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~ 462 (1086)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 37789999999999999999999999999999999887531 23367899999999999864 67 799999999999
Q ss_pred EEeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce---eEEecCCCCceEEEEEecC---
Q 001396 463 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 534 (1086)
Q Consensus 463 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 534 (1086)
+||+++++ .+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999998876688999999999999999987643 2345667778999999997
Q ss_pred --------------CCEEEEEeeCCCCceeEEEEeCCCC---eeeeEEecccccCCceEEEEEecCC----CEEEEEECC
Q 001396 535 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 593 (1086)
Q Consensus 535 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d 593 (1086)
+++|++++. ++.|++||+..+ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 778999999765 4556677766 899999999986 789999999
Q ss_pred CcEEEEEcCCC---e-eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 594 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 594 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
++|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11223323 34689999999999999999999999999763
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=291.53 Aligned_cols=307 Identities=10% Similarity=0.104 Sum_probs=228.2
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC-
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 400 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 400 (1086)
+.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++...... ...+.+|...|.+++|+|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASP 68 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCG
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCC
Confidence 45789999999999999998 5999999999999999987533211 112678999999999999
Q ss_pred -CCCEEEEEeCCCEEEEEEecCCCcc------ccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 401 -DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 401 -dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
|+++|++|+.||.|++||+.+++.. +....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.+++.
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTC
T ss_pred CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHH
Confidence 6999999999999999999987431 234467789999999999999 88 899999999999999999887
Q ss_pred eEEee-------------cCCcceEEEeeccc-CCccEEEEEEcCCeEEEEEcCCCce--eEEecCCCCceEEEEEecCC
Q 001396 472 TYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 472 ~~~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~ 535 (1086)
+..+. .|...+.+++|++. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI 226 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence 65443 58889999999764 1367999999999998888877765 55677888899999999998
Q ss_pred ----CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE----ECCCcEEEEEcCCCeeE
Q 001396 536 ----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQLL 607 (1086)
Q Consensus 536 ----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~~ 607 (1086)
++|++++. ++.|++||+.++.......... .........+....+..+ .....+.+|+....+.+
T Consensus 227 ~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 227 GRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299 (351)
T ss_dssp SCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEEE
T ss_pred CCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccEE
Confidence 78999886 7789999998775544433332 333334444443333333 34455677777777778
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
..+..|. ..|.+++|+|++++|++++.||.|++|++.++..+..+.
T Consensus 300 ~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 300 SEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 8877654 469999999999999999999999999999876655443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-30 Score=280.33 Aligned_cols=277 Identities=19% Similarity=0.253 Sum_probs=237.5
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
..+|+||+++ +||+| .|++|+|||+.++++++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5779999987 77776 5899999999999876533 4567889999999999999 8999999999999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCce-eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887654 4567888999999999999999999986 7789
Q ss_pred EEEeCCCCeee----eEEecccccCCceEEEEEecCCCEEE---EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 552 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 552 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
++||+.+++.. .....+. ..|.++.++|++..++ +++.++.|++||............. ..+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred eEEECCCCcccccceeeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence 99999887543 2333333 7899999999876544 4568899999999998887776544 34789999
Q ss_pred ecCCCEEEEEE--CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 625 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 625 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999996 7899999999999
Q ss_pred ccceeeee
Q 001396 703 KSEVEKPL 710 (1086)
Q Consensus 703 ~i~vw~~~ 710 (1086)
+|++||+.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=293.85 Aligned_cols=284 Identities=15% Similarity=0.160 Sum_probs=242.5
Q ss_pred cCCCcc--EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 387 RDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 387 ~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
.+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 355544 55566665 56888889999999999998765422 224889999999999999 89999999999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
|+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||++ .......+..+...|.+++|+|+++++++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998 34699999999999999999 45567788889999999999999999999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EE--CCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+.
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~ 307 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVT 307 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEE
T ss_pred ----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEE
Confidence 6789999999999998888877 89999999998765555 44 6999999999999999888644 3589
Q ss_pred eEEEecCCCEEEEEE--CCCcEEEEECCCCCeee--eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 621 RICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++++ |++++++
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~ 365 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRILS 365 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEEE
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEEE
Confidence 999999999999954 89999999999865443 466888889888886 7889999
Q ss_pred eccccCccceeeeeec
Q 001396 697 SVEAENKSEVEKPLFA 712 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~ 712 (1086)
+++.|+.+++|++...
T Consensus 366 s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSEEEEEECCC-
T ss_pred EEeCCCcEEEEECCCC
Confidence 9999999999998643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-30 Score=291.47 Aligned_cols=259 Identities=13% Similarity=0.150 Sum_probs=216.3
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC--ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
+++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+.. +.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEE
Confidence 4567899999999999999998 5899999999999999843 33322 778999999999
Q ss_pred ECCC--CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--e
Q 001396 398 WSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--R 471 (1086)
Q Consensus 398 ~spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~--~ 471 (1086)
|+|+ +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ ++ ++++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 999999999999999999987621 23357789999999999999 88 89999999999999999874 3
Q ss_pred eEEeecCCcceEEEeecccC-----------CccEEEEEEcCCeEEEEEcCCCce----eEEecCCCCceEEEEEecC--
Q 001396 472 TYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN-- 534 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~d-- 534 (1086)
...+.+|...|.+++|++.. ++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999997642 578999999999999999987653 3466778899999999999
Q ss_pred -CCEEEEEeeCCCCceeEEEEeCCCCeee--eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 535 -GRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 535 -~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
+++|++++. ++.|++||+.++... ........+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 899999886 678999999987422 1222222234889999999999999999999999999998543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-30 Score=300.13 Aligned_cols=254 Identities=14% Similarity=0.226 Sum_probs=208.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------cccceEecccc------------ccEeEEEecCCC
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC 447 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~v~~s~d~ 447 (1086)
.|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. .+....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999998762 11234677898 889999999998
Q ss_pred --CcEEEEEEeCCCcEEEEeCCCCcee---------------------------------------EE-eecCCcceEEE
Q 001396 448 --KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSL 485 (1086)
Q Consensus 448 --~~l~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~ 485 (1086)
. .+++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998765432 12 36799999999
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEE--------ecCCCCceEEEEEecCC-CEEEEEeeCCCCceeEEEEeC
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
+|++ ++.+|+++ .|+.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9965 67799998 899999999985443332 45778899999999999 99999986 678999999
Q ss_pred CCCee----eeEEecccc---------cCCceEEEEEecCCCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCC----
Q 001396 557 SEGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE---- 618 (1086)
Q Consensus 557 ~~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 618 (1086)
++++. +..+.++.. +...|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 677877660 0128999999999999999999 9999999997 888888876643111
Q ss_pred ---------CceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 619 ---------NPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 619 ---------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=291.09 Aligned_cols=256 Identities=17% Similarity=0.298 Sum_probs=218.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~i 463 (1086)
+.+|...|.+++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 77899999999999999999999999999999998432 1233367899999999999987 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEec------
Q 001396 464 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 533 (1086)
Q Consensus 464 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 533 (1086)
||+.+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999776437899999999999999998874 4456678888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCCe----eeeEEecccccCCceEEEEEecC---CCEEEEEECCCcEEEE
Q 001396 534 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 599 (1086)
Q Consensus 534 -------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 599 (1086)
++.++++++. ++.|++||++++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 6679999998764 445566666 89999999999 8999999999999999
Q ss_pred EcCCCe---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 600 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 600 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++......
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 999874 2333333334557899999999999999999999999999865433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=293.53 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=239.5
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987655 67899999999999 677 8999999999999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee---EEecCCCCceEEEEEecCCCEEEEEee
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 349999999999999999987765 567788889999998 7889999986
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++.|++||+.+++.+..+.+|. ..|.++.++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 7789999999999999999887 889999884 6799999999999999999999999988664 4588888
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCC---------eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 624 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78899999999999999987655 677788888888777663 677
Q ss_pred ceeccccCccceeeeeecC
Q 001396 695 EISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~~~~ 713 (1086)
+++++.||.|++|++....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEECCSSSEEEEEC-----
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=287.54 Aligned_cols=290 Identities=17% Similarity=0.148 Sum_probs=239.1
Q ss_pred ecCCCccEEEEEECCC---CCEEEEEeCCCEEEEEEecC-CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcE
Q 001396 386 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 461 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i 461 (1086)
+.+|.+.|.+++|+|+ |++||+|+.||.|+|||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 44331 35778999999999999999 89999999999
Q ss_pred EEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 462 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 462 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999777788999999999999999999998888777665 455555554 466666
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE----EEEEECCCcEEEEEcCCC---eeEEEEcCCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 614 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~ 614 (1086)
+. ++.+.+|++............ .....+.++.+.++... +++++.||.|++||+... .....+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhccc-cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 667999999876543332221 12355667777666554 999999999999999987 4556665543
Q ss_pred CC----------CCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 615 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 615 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCcccceeccccCccceeeee
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|+++++++++.|+..+.|+..
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 788999999999877777644
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=282.41 Aligned_cols=285 Identities=10% Similarity=0.000 Sum_probs=240.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..+|.+.|.+++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5689999999999999999999999999999999987632223356689999999999999872 378899999999999
Q ss_pred C-CCCceeEEeec--CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC---------CceeEEecCCCCceEEEEEec
Q 001396 466 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 466 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 533 (1086)
+ .+++. ..+.+ |...|.+++|++ +.+|++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999976 57999999999999999987 55555555 777899999999
Q ss_pred CCCEEEEEeeCCCCceeEEEEeCCC-Ceee--eEEecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCCC-----
Q 001396 534 NGRRLFSCGTSKEGESFLVEWNESE-GAIK--RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 604 (1086)
Q Consensus 534 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~----- 604 (1086)
++ +++++. ++.|++||+++ +... .....+. ..+.+++|+| +++++++++.||.|++|+++..
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 67899999988 5432 2333334 7899999999 9999999999999999999887
Q ss_pred -eeEEEEcCCCC-------CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccc-ccceeeeEEccCCCceec
Q 001396 605 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 605 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 675 (1086)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776533 336899999999999999999999999999999999999888 88887776 2
Q ss_pred cccCCeeeecCCCCCCcccceeccccCc-cceeee
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 709 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~vw~~ 709 (1086)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5788999999998 766663
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=280.97 Aligned_cols=294 Identities=11% Similarity=0.121 Sum_probs=221.5
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 461 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i 461 (1086)
++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47899999999999999999999999999999999976432 33446779999999999999 578 89999999999
Q ss_pred EEEeCCCC---------ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------------
Q 001396 462 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------------- 519 (1086)
Q Consensus 462 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------- 519 (1086)
++||+.++ +.+..+.+|...|.+++|++..++.+|++++.||.|++||+++.+....+
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 55788889999999999977533789999999999999999887644322
Q ss_pred cCCCCceEEEEEecC---CCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCC----CEEEEE
Q 001396 520 DAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 590 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 590 (1086)
..+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|. ..|.+++|+|++ ++|+++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 145668999999997 899999886 67788888777765 55566666 899999999998 799999
Q ss_pred ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE----ECCCcEEEEECCCCCeeeeccccccceeeeEE
Q 001396 591 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 591 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 666 (1086)
+.||.|++||+.++......... .........++....++.+ .....+.+|+......+..+.+|...|.+++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 99999999999876554433222 1122333334433333333 33445566666666778888899999999999
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
+ |+++++++++.|+.|++|++..
T Consensus 315 s----------------------~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 315 N----------------------LTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp C----------------------SSSCCEEEEETTSCEEEEEECT
T ss_pred c----------------------CCCCEEEEecCCCcEEEEecCc
Confidence 6 7788999999999999999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=285.22 Aligned_cols=300 Identities=12% Similarity=0.011 Sum_probs=235.0
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCc---eeeeeeeeeeecccc-----------------------------
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------- 377 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~----------------------------- 377 (1086)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccccc
Confidence 799999999998 46655 46899999999998 4432 221100
Q ss_pred -----------ceeeeeeeecCCCccEEEEEECCCCCEE-EEEeCCCEEEEEEec--CCCccccceEeccccccEeEEEe
Q 001396 378 -----------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAF 443 (1086)
Q Consensus 378 -----------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~v~~ 443 (1086)
..........+|...|.+++|+|+|++| |+|+.||.|+|||+. +++.+.... ...|...|.+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISI 157 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEE
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEE
Confidence 0000111234677789999999999996 889999999999999 777665321 1367789999999
Q ss_pred cCCCCcEEEEEEeCCCcEEEEeCCCCceeE----EeecCCcceEEEeeccc-CCccEEEEEEcCCeEEEEEcCCCceeEE
Q 001396 444 SAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD 518 (1086)
Q Consensus 444 s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 518 (1086)
+|+++ +|++++.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.++.....
T Consensus 158 sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 158 AEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp CTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred cCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 99999 89999999999999999887654 78899999999999774 2277999999999999999999888776
Q ss_pred -ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc----------------------ccCCce
Q 001396 519 -YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSV 575 (1086)
Q Consensus 519 -~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v 575 (1086)
+..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....|
T Consensus 236 ~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 236 WLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp ECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred eecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 55788999999999 9999999986 7789999999999888886431 123578
Q ss_pred EEEEEecCCCEEEEEE-CCCcEEEEEc--CCC---eeEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCcEEEE
Q 001396 576 SVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKIL 643 (1086)
Q Consensus 576 ~~~~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw 643 (1086)
..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 9999999999999998 8999999999 565 666677655 35899999996533333332 4557888
Q ss_pred ECCC
Q 001396 644 ETPE 647 (1086)
Q Consensus 644 ~~~~ 647 (1086)
.+..
T Consensus 388 ~~~~ 391 (450)
T 2vdu_B 388 EYNL 391 (450)
T ss_dssp EEET
T ss_pred EEEc
Confidence 7653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-28 Score=273.39 Aligned_cols=280 Identities=11% Similarity=0.102 Sum_probs=229.2
Q ss_pred ceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE-EEEeCCCEEEEEEe
Q 001396 341 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 419 (1086)
Q Consensus 341 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 419 (1086)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35899999999999999999987764 4445 458999999999987 56678999999999
Q ss_pred cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EE
Q 001396 420 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 498 (1086)
Q Consensus 420 ~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 498 (1086)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9987655 344443 8999999999994 3456667899999999999998888754 4678899854 56666 78
Q ss_pred EEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEE
Q 001396 499 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 578 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 578 (1086)
++.++.|++||+.+++....+..+ ..+..++|+|+++.++..+. .++.|++||+.+++.+..+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999998887777654 45689999999998865432 2678999999999888777643 578999
Q ss_pred EEecCCCEEEEEE---CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCcEEEEECCCCCeeeec
Q 001396 579 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 579 ~~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 68999999999999988887653 36889999999988 56678999999999998887776
Q ss_pred ccccc
Q 001396 655 GVLSD 659 (1086)
Q Consensus 655 ~~~~~ 659 (1086)
..+..
T Consensus 283 ~~~~~ 287 (391)
T 1l0q_A 283 AVGKN 287 (391)
T ss_dssp ECSSS
T ss_pred ECCcC
Confidence 65544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-29 Score=276.39 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=217.0
Q ss_pred eeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 320 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 320 ~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
.++++..|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 4456689999999999999998 588888765 789999887665431 11257889999
Q ss_pred CCCCEEE-EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC-ceeEEeec
Q 001396 400 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 477 (1086)
Q Consensus 400 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 477 (1086)
+++.+++ +++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987665 343 66799999999864 33333 789999999998 77777665
Q ss_pred CCcceEEEeecccCCccEEEE--EEcCCeEEEEEcCCCc----------------eeEEecCCCCceEEEEEecCCCEEE
Q 001396 478 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 334445544 35555 5899999999998765 2677889999999999999999999
Q ss_pred EEeeCCCCcee-EEEEeCCCCeeeeEEe-c-ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE--EEE----
Q 001396 540 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTI---- 610 (1086)
Q Consensus 540 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~---- 610 (1086)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+... ..+
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 777 9999999999999998 5 66 89999999999999999999999999999765321 111
Q ss_pred --------------cCC-CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 611 --------------DAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 611 --------------~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
... ........++|+++++.+++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 000 11122467999999999999999999999987643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=279.89 Aligned_cols=285 Identities=13% Similarity=0.150 Sum_probs=233.8
Q ss_pred ccEEEEEECCCCCEEE-EEeCCCEEEEEEecCCC-ccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCC
Q 001396 391 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 391 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
.....++++|+...++ +++.+|.|+||++.... .......+.+|.+.|.+++|+| +++ +|++|+.|++|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 57889999999996543 2233445779999999999999 787 89999999999999999
Q ss_pred CC-------ceeEEeecCCcceEEEeecccCCc-cEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCCCE
Q 001396 468 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 468 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~ 537 (1086)
++ +++..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+++....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67889999999999999965 44 59999999999999999999988888 788999999999999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEE-ecccccCCceEEEEEecCCCEEEEE---ECCCcEEEEEcCCCee-EEEEcC
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 612 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~ 612 (1086)
|++++. ++.|++||+++++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 778999999999999888 6666 2348999999999999998 7999999999998764 333332
Q ss_pred CCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCe-eeecccc--ccceeeeEEccCCCceeccccCCeeeecCCC
Q 001396 613 GGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDP 688 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~~--~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~ 688 (1086)
. +...+.+++|+|+++++++++ .|+.|++|++.++.. +..+..+ ...+.+++|+
T Consensus 265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2 234589999999999997555 699999999998874 4444443 4778888886
Q ss_pred CCCcccceeccccCccceeeee
Q 001396 689 KEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 689 s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|++.++++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 56666665 45689999976
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=249.69 Aligned_cols=294 Identities=14% Similarity=0.125 Sum_probs=207.5
Q ss_pred cEeEEEec-CCCCcEEEEEEeCCCcEEEEeCCCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC
Q 001396 437 NVNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512 (1086)
Q Consensus 437 ~v~~v~~s-~d~~~l~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 512 (1086)
.+.++-|- +..+.+.+++++ ..+|++|+..++ ++++++.+|..+|..+.+.|+.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35566663 445566788888 568999999999 8999999999999999997754332222111
Q ss_pred CceeEEecCCCCceEEEEEecC----CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEE
Q 001396 513 LGARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 588 (1086)
Q Consensus 513 ~~~~~~~~~~~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 588 (1086)
..+...|.+++++|| ++.+++++. .+.+|++.+++ .+.
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~ 149 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVS 149 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEE
Confidence 234457889999999 999998763 36667543333 333
Q ss_pred EEE--CCCcEEEEEc-CCCeeEEEEcCCCCCCCCceEEEec---CCCEEEEEECCCcEEEEECCCCCeeeecccccccee
Q 001396 589 AAG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 662 (1086)
Q Consensus 589 ~~s--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~ 662 (1086)
+++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+..+.+|..
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--- 224 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--- 224 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc---
Confidence 322 4777777777 34666666666644 578899999 789999999999999999999988877754322
Q ss_pred eeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCce
Q 001396 663 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 742 (1086)
Q Consensus 663 ~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 742 (1086)
+...+.+++|+|+|+.
T Consensus 225 ----------------------------------------------------------------~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 225 ----------------------------------------------------------------YQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------------------------------------------------------------CCCEEEEEEETTEE
T ss_pred ----------------------------------------------------------------ceeeeEEEEECCCCCE
Confidence 1224667889999887
Q ss_pred EEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEE
Q 001396 743 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISL 821 (1086)
Q Consensus 743 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~i 821 (1086)
+++++.+.. +| .+++++ |++|++
T Consensus 241 lvs~s~~~~--~w------------------------------------------------------~laSGs~D~tIkl 264 (356)
T 2w18_A 241 FIVLSHPCA--KE------------------------------------------------------SESLRSPVFQLIV 264 (356)
T ss_dssp EEEEC--------------------------------------------------------------------CCEEEEE
T ss_pred EEEeccCCC--cc------------------------------------------------------eeeccCCCcEEEE
Confidence 777664311 11 345665 688999
Q ss_pred EEccCceEEEEE-----cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeE-EEEEeCCCCEE
Q 001396 822 YIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNIL 895 (1086)
Q Consensus 822 wd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~-~l~~spdg~~l 895 (1086)
||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 999999887765 356555544444 367999999999999999999999999999988765 58999999999
Q ss_pred EEEeCCCcEEEEEC
Q 001396 896 VSSGGDAQIFVWDV 909 (1086)
Q Consensus 896 ~s~s~dg~i~iwd~ 909 (1086)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-27 Score=267.35 Aligned_cols=328 Identities=11% Similarity=0.130 Sum_probs=254.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EEEEcCCeEEEEEcCCCceeEEecCCCCceEEE
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 529 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 529 (1086)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788999999999999999999999987754 78899854 66665 677799999999999988877776655 89999
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEE-EEEECCCcEEEEEcCCCeeEE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~ 608 (1086)
+|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999876653 2578999999999988887754 468999999999988 577789999999999999988
Q ss_pred EEcCCCCCCCCceEEEecCCCEE-EEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCC
Q 001396 609 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 687 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~ 687 (1086)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778899999987542211100
Q ss_pred CCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcc
Q 001396 688 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 767 (1086)
Q Consensus 688 ~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 767 (1086)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe----CCeEEEEEccCceEEEEEcCCCCCeEEE
Q 001396 768 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 843 (1086)
Q Consensus 768 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 843 (1086)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122355677778877777664 5789999999999888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccccCCeE---EEE------------EeCCC----------CEEEE
Q 001396 844 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLV------------FSDAL----------NILVS 897 (1086)
Q Consensus 844 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~---~l~------------~spdg----------~~l~s 897 (1086)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+.+. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999988877655421 123 32221 23556
Q ss_pred EeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 898 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 898 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
.+.|..+++|++..+.... . .-....|+++|.|.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6678899999998765211 0 1224679999998876
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=305.75 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=213.0
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..++.+|.+.|++++|+|+|++ |++|+.||+|+|||+.++..... ..+.+|.+.|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 4568999999999999999985 89999999999999985432211 12778999999999999
Q ss_pred C--CCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEEEeCCCCc--eeEE
Q 001396 401 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS 474 (1086)
Q Consensus 401 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~iwd~~~~~--~~~~ 474 (1086)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ ++ .+++|+.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 223357789999999999999 88 89999999999999998873 4567
Q ss_pred eecCCcceEEEeecccC-----------CccEEEEEEcCCeEEEEEcCCCc----eeEEecCCCCceEEEEEecC---CC
Q 001396 475 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR 536 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d---~~ 536 (1086)
+.+|...|.+++|++.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999997642 57899999999999999998874 44567788999999999999 89
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeee--eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 678999999886421 1112222234889999999999999999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=278.91 Aligned_cols=255 Identities=16% Similarity=0.253 Sum_probs=213.9
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCC----------ceeeeeeeeeeeccccceeeeeeeecCCCc
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----------QKLFIRNFKVWDIGACSMLFKTALVRDPGV 391 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 391 (1086)
..+.+|.+.|++++|+|++..+||+|+.||.|+|||+.+. ..+. .+.+|..
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~~ 182 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQK 182 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCSS
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCCC
Confidence 4556899999999999985457999999999999999862 2222 2678999
Q ss_pred cEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCcc----ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 392 SVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 392 ~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
.|.+++|+|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||+
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDT 261 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEET
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEEC
Confidence 999999999998 9999999999999999885432 223456789999999999995444 8999999999999999
Q ss_pred CCC---ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEecCCCCceEEEEEecCCC-EEEEE
Q 001396 467 VTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSC 541 (1086)
Q Consensus 467 ~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~ 541 (1086)
.++ +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ +++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp TCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 987 5778888999999999997642 23799999999999999998 456778888999999999999996 57777
Q ss_pred eeCCCCceeEEEEeCCC--------------CeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEcCCC
Q 001396 542 GTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 604 (1086)
+. ++.|++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus 341 ~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 341 GT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp ET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 65 67899999987 24455555555 8899999999999 8899999999999999754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-27 Score=268.96 Aligned_cols=355 Identities=14% Similarity=0.090 Sum_probs=261.6
Q ss_pred CCccEEEEEECCCCCEEEEEeCC-CEEEEEEecCCCccccceEeccccccEeEEE---ecCCCCcEEEE-----------
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 453 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~---~s~d~~~l~l~----------- 453 (1086)
....|..+.++|....++..... ...+++.. .....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443211 11222221 1223455666 77776643222
Q ss_pred -EEeCCC--cEEEEeCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-----EecCCC
Q 001396 454 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 523 (1086)
Q Consensus 454 -s~~~d~--~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-----~~~~~~ 523 (1086)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 223344 4444554445 5566666554 455888865 66788888889999999999888776 344677
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcC
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 602 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~ 602 (1086)
..+.+++|+++++++++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++++++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 79999999999999999875 6789999999999998888766 8899999999999886655 79999999999
Q ss_pred CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE--------CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 603 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 603 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888876543 378999999999999887 3566667766543111100
Q ss_pred ccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEE
Q 001396 675 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 754 (1086)
Q Consensus 675 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 754 (1086)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-e-CCeEEEEEccCceEEEE
Q 001396 755 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 832 (1086)
Q Consensus 755 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~-dg~i~iwd~~~~~~~~~ 832 (1086)
.+...+.+++|+|+++.+++. + ++.|++||+.+++.+..
T Consensus 300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 012245567888888765444 3 68899999999888887
Q ss_pred EcCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEE
Q 001396 833 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 897 (1086)
Q Consensus 833 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s 897 (1086)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence 76 677899999999 8888888876 579999999999999888864 57999999999999998
Q ss_pred EeC-CCcEEEEECCC
Q 001396 898 SGG-DAQIFVWDVDG 911 (1086)
Q Consensus 898 ~s~-dg~i~iwd~~~ 911 (1086)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=305.46 Aligned_cols=254 Identities=17% Similarity=0.299 Sum_probs=215.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCC--CCcEEEEEEeCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 463 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d--~~~l~l~s~~~d~~i~i 463 (1086)
+.+|.+.|.+++|+|+|++||+|+.||+|+|||+.++.. .....+.+|.++|++++|+++ ++ ++++|+.||+|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 779999999999999999999999999999999985432 233467899999999999988 77 8999999999999
Q ss_pred EeCCCCc--eeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEec------
Q 001396 464 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 533 (1086)
Q Consensus 464 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 533 (1086)
||+.+++ .+..+.+|...|.+++|++..++..+++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999776447899999999999999998873 4556678888999999999
Q ss_pred -------CCCEEEEEeeCCCCceeEEEEeCCCC----eeeeEEecccccCCceEEEEEecC---CCEEEEEECCCcEEEE
Q 001396 534 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 599 (1086)
Q Consensus 534 -------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw 599 (1086)
+++.+++++. ++.|++||++++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 678999999877 5556667766 89999999999 8999999999999999
Q ss_pred EcCCCeeE---EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCC
Q 001396 600 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 649 (1086)
Q Consensus 600 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 649 (1086)
|+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99986421 112222344568999999999999999999999999998653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=270.78 Aligned_cols=300 Identities=12% Similarity=0.047 Sum_probs=229.6
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccce--EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
..+.+++|+|++.++++++.++.|++||+.+++..+... .+.+|...|.+++|+++++ ++++++.|+.|++||+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888889999999999987654211 2457889999999999998 899999999999999999
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEE-EEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC-
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 546 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~- 546 (1086)
++.+..+..|...+.+++|++ ++..++ +++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 556664 555899999999998877766655 446899999999999998875321
Q ss_pred ---CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 547 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 547 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.++ +++.++.|++||+.+++....+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998777653 33 5788999999998665 5689999999999999988888643 347899
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccC
Q 001396 623 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 702 (1086)
+|+|+++++++++.+.. .....++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876320 01122344445555
Q ss_pred ccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeec-cceeEEeecc
Q 001396 703 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 758 (1086)
Q Consensus 703 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~ 758 (1086)
.+++||....+.... + .....+.+++|+|+|+.+++++. ++.+++|+++
T Consensus 382 ~v~~~d~~~~~~~~~--~-----~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEF--W-----EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEE--E-----ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEE--e-----cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 555555432111100 0 02345788899999998887765 8999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=265.38 Aligned_cols=299 Identities=13% Similarity=0.135 Sum_probs=216.4
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|...|.+++|||||++||+|+.++ ++|||+.+++... ..+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----SQEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----EEECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----eeecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 567999999999999999999998776 7899998765432 122235888999998884 346778889999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEEEEeeC
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+.+++++..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 3 34443 5889999999887 44443333 445566777 66766522
Q ss_pred CCCceeEEEEeCCCCe----------------eeeEEecccccCCceEEEEEecCCCEEEEEECCCc-EEEEEcCCCeeE
Q 001396 545 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 607 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~ 607 (1086)
..++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++|+.|++ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 126789999999875 267778877 99999999999999999999998 999999999999
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee--eeccc-----cccceeeeEEccCCCceeccccCC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
..+....+...|.+++|+|++++|++++.|++|++||+...... ..+.. .....+++....... .......
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 309 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC 309 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence 99873212456999999999999999999999999999865321 11111 001111111000000 0011113
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
.+++ +++++.+++++.||.+++|++...+
T Consensus 310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 4555 7889999999999999999987543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=270.05 Aligned_cols=255 Identities=16% Similarity=0.310 Sum_probs=214.9
Q ss_pred eeeecCCCccEEEEEECCC-CCEEEEEeCCCEEEEEEecCC-------CccccceEeccccccEeEEEecCCCCcEEEEE
Q 001396 383 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 383 ~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s 454 (1086)
.....+|.+.|.+++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEE
Confidence 3346679999999999997 789999999999999999862 112344467899999999999999886 6999
Q ss_pred EeCCCcEEEEeCCCCce-------eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC---ceeEEecCCCC
Q 001396 455 CGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGL 524 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~ 524 (1086)
|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 99999999999988432 4667789999999999764 4579999999999999999987 46667778889
Q ss_pred ceEEEEEecCCC-EEEEEeeCCCCceeEEEEeCCC-CeeeeEEecccccCCceEEEEEecCCC-EEEEEECCCcEEEEEc
Q 001396 525 GCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 601 (1086)
Q Consensus 525 ~i~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~ 601 (1086)
.+.+++|+|++. ++++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.||.|++||+
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 999999999998 5777765 77899999997 56788888877 8999999999985 5888999999999999
Q ss_pred CC--------------CeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCcEEEEECCCC
Q 001396 602 NK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 648 (1086)
Q Consensus 602 ~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 648 (1086)
.. .+.+.....+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 87 2445555444 44699999999999 9999999999999998753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=270.60 Aligned_cols=272 Identities=10% Similarity=0.053 Sum_probs=214.2
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
...+.+|++ ++++|+.||+|++||+.+++.+... . ...|.+++|+|+ +++++.|+
T Consensus 41 ~~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~ 95 (343)
T 3lrv_A 41 NKSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCN 95 (343)
T ss_dssp CSSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTT
T ss_pred hhhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCC
Confidence 345567786 6999999999999999999877641 1 356778889998 99999999
Q ss_pred EEEEEEec---------CCCccccceEeccccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEee-cCCc
Q 001396 413 IVQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGA 480 (1086)
Q Consensus 413 ~i~iwd~~---------~~~~~~~~~~~~~h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~ 480 (1086)
+|++|+.. +++.++. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+.... .|..
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 171 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDV 171 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSC
T ss_pred eEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCC
Confidence 99999765 3332221 1226778999999999 999 89999999999999999999877664 4556
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-EEecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
.|.+++|++ ++.+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|+|.+|++++. +.|++||+++
T Consensus 172 ~i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~ 244 (343)
T 3lrv_A 172 EYSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRK 244 (343)
T ss_dssp CCCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTS
T ss_pred ceEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCC
Confidence 899999965 7789999999999999999999887 77777 8899999999999999999983 2799999999
Q ss_pred CeeeeEEecccccCCce--EEEEEecCCCEEEEEEC-CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec---CCCEEE
Q 001396 559 GAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLA 632 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~ 632 (1086)
++.+..+..+..+...+ .+++|+|++++|++++. |+.|++|++.+....... ..+..++|++ +...++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMD 318 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeE
Confidence 88766655432222334 36999999999999998 999999999765433332 1245677777 888999
Q ss_pred EEECCCcEEEEECC
Q 001396 633 VIANENRIKILETP 646 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~ 646 (1086)
+++.|+.+.++-..
T Consensus 319 ~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 319 VVCGDGGIAAILKT 332 (343)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEecCCceEEEEec
Confidence 99999999887543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-27 Score=243.72 Aligned_cols=285 Identities=14% Similarity=0.068 Sum_probs=197.1
Q ss_pred ceEeeecC-CCceEEEEEeccCcEEEEecCCC---ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 331 PMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 331 V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
+.++-|-. ..+.+.+.......|++|+..++ +.+++ +.+|+.+|..++|+||..-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 45555543 34444444444589999999998 66654 556777777777777654433
Q ss_pred EEeC--CCEEEEEEecCC---CccccceEeccccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeC-CCCceeEEeecC
Q 001396 407 VAYS--KHIVQLYAYHGG---SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA-VTGSRTYSFEGH 478 (1086)
Q Consensus 407 s~~~--d~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~-~~~~~~~~~~~h 478 (1086)
...- =..-.|+-+.-. +.+.+...-.+|...|..+ ++++ ++.+++ .|+.|++|++ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 3211 011111111110 1111111123444445443 4554 444433 5899999998 558888888899
Q ss_pred CcceEEEeecc-cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC---ceEEEEEecCCCEEEEEee--------CCC
Q 001396 479 GAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGT--------SKE 546 (1086)
Q Consensus 479 ~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d~~~l~~~~~--------~~~ 546 (1086)
...++.++|++ ..++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|+++++++. ++.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999988 66789999999999999999999999888876443 5778899999999876542 234
Q ss_pred CceeEEEEeCCCCeeeeEEe-----cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 547 GESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
.++.|++||..+++.+..+. +|. ..+.+..+ ++..+++++.|++|+|||+.+++++.++..|.. ..+..
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs~ 331 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWSF 331 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEEE
Confidence 58899999999999887653 333 44444444 378899999999999999999999999986643 12446
Q ss_pred EEEecCCCEEEEEECCCcEEEEEC
Q 001396 622 ICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
++|+|||++|++|+.|++|+|||.
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 899999999999999999999985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=273.11 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=219.2
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEec--------------------------------------
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 432 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 432 (1086)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899999999977666 57789999999988211111222
Q ss_pred ----------------cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC--CCceeEEee--cCCcceEEEeecccCC
Q 001396 433 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN 492 (1086)
Q Consensus 433 ----------------~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~ 492 (1086)
+|.+.|.+++|+|+++. ++++++.|+.|++||+. +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34457999999999993 24899999999999999 898888886 5678999999955 7
Q ss_pred ccEEEEEEcCCeEEEEEcCCCceeE----EecCCCCceEEEEEecC---CCEEEEEeeCCCCceeEEEEeCCCCeeeeE-
Q 001396 493 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT- 564 (1086)
Q Consensus 493 ~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~- 564 (1086)
+.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 7899999999999999998776543 56678889999999999 999999986 67799999999988877
Q ss_pred EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----------------------CCCCCCce
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR 621 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~ 621 (1086)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+..
T Consensus 237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 44666 899999999 9999999999999999999999988887632 11235789
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEEC--CCC---CeeeeccccccceeeeEEcc
Q 001396 622 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP 668 (1086)
Q Consensus 622 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~p 668 (1086)
++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++++|
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 99999999999999 8999999999 555 556666666 7788888875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=265.29 Aligned_cols=279 Identities=9% Similarity=0.055 Sum_probs=214.1
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
..+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 42 ~~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~-------- 104 (343)
T 3lrv_A 42 KSMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN-------- 104 (343)
T ss_dssp SSSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT--------
T ss_pred hhhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC--------
Confidence 34556777 89999999999999999999988886 566777877654 99999999999998643
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe-cccccCCceEEEEEec--CCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~ 597 (1086)
.+.+||..+++.+..+. +|. ..|.+++|+| +++++++++.||+|+
T Consensus 105 -----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 105 -----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp -----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEE
T ss_pred -----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 37788988888776665 443 7899999999 999999999999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee-eeccccccceeeeEEccCCCceecc
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~~~~ 676 (1086)
+||+.+++.......+.. ..+.+++|+|++.++++|+.||.|++||+.++... ..+..
T Consensus 153 ~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-------------------- 211 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-------------------- 211 (343)
T ss_dssp EEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--------------------
T ss_pred EEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--------------------
Confidence 999999998766644322 35899999999999999999999999998865322 11100
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC-
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP- 835 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~- 835 (1086)
+|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..
T Consensus 212 -------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 212 -------------------------------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp -------------------------------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCC
T ss_pred -------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeeccc
Confidence 155667777777777777777766777777776655444332
Q ss_pred --CCCCe--EEEEEcCCCCCEEEEEeC-CCeEEEEEcCCceeEEEeccccCCeEEEEEeC---CCCEEEEEeCCCcEEEE
Q 001396 836 --PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVW 907 (1086)
Q Consensus 836 --~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp---dg~~l~s~s~dg~i~iw 907 (1086)
|...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +.+.+++++.||.+.++
T Consensus 255 ~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp BC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred ccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 22333 4799999 8999999998 999999999766443332 5678889998 88999999999999988
Q ss_pred ECCC
Q 001396 908 DVDG 911 (1086)
Q Consensus 908 d~~~ 911 (1086)
-...
T Consensus 330 ~~~~ 333 (343)
T 3lrv_A 330 LKTN 333 (343)
T ss_dssp EECS
T ss_pred EecC
Confidence 6554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=269.17 Aligned_cols=342 Identities=10% Similarity=0.091 Sum_probs=257.5
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc--CCCeeE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 607 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~ 607 (1086)
+++|++..++++.. ++.|.+||..+++++.++.... .+..++|+|+++++++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888887777764 6789999999999999988544 3889999999999999999999999999 889988
Q ss_pred EEEcCCCCCCCCceEEEec----CCCEEEEEEC-CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCee
Q 001396 608 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 682 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~ 682 (1086)
..+.... .+..++|+| ||+++++++. +++|.+||..+++.+..+..+...+....+.
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~--------------- 277 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH--------------- 277 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence 8887432 368999999 9999999885 8999999999887776554221100000000
Q ss_pred eecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEE-eeccceeEEeeccCCc
Q 001396 683 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRND 761 (1086)
Q Consensus 683 ~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~-~~~dg~i~vw~~~~~~ 761 (1086)
....+.++.+++++..+++ ...++.|.+|++....
T Consensus 278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 1236788999998766554 4567899998875432
Q ss_pred cccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcC----
Q 001396 762 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 835 (1086)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~---- 835 (1086)
. +....+ .+...+..++|+|||++++++. +++|.+||+.+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110001 1344567899999999887765 68999999999999988864
Q ss_pred CCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------ceeEEEeccccCCeEEEEEeCCCCEEEEEe-------C
Q 001396 836 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 900 (1086)
Q Consensus 836 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-------~ 900 (1086)
|.+....+ ++|+++.+++++. .|++|.+||+.+ .+++.++.+|.+.+..++|+|||++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 54444443 5774577888876 689999999998 899999999999899999999999999987 2
Q ss_pred CCcEEEEECCCCceeeeeeeecc--CCCccCCCCceEEEEecCCCEEEEE------eCCeEEEEEcCCccceeccc
Q 001396 901 DAQIFVWDVDGWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 968 (1086)
Q Consensus 901 dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~ 968 (1086)
+++|.|||+.+++... ..+... .+.......+..++|+|||+.|.++ .++.|.|||.++++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999877441 122110 0001111368999999999999874 26899999999999887644
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-26 Score=265.63 Aligned_cols=346 Identities=11% Similarity=0.091 Sum_probs=246.9
Q ss_pred eecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeec-CCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 335 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 335 ~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
+|+|+++ ++++++.|++|.+||..+++++.. +. ++. +..++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899996 789999999999999999998765 33 343 889999999999999999999
Q ss_pred EEEEEe--cCCCccccceEeccccccEeEEEecC----CCCcEEEEEEe-CCCcEEEEeCCCCceeEEeecCCcceEEEe
Q 001396 414 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 414 i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~----d~~~l~l~s~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 486 (1086)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776554 444 445689999999 999 566665 589999999999999888764322111111
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee--E
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 564 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 564 (1086)
++ +...+..+.++|++..+++... +++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence 11 1124667788887777665542 36678889888765443 2
Q ss_pred EecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE-EecC-CCEEEEEE-CCCcE
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 640 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 640 (1086)
+. +. ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 32 22 5678899999999887665 68999999999999998887432111112233 4677 55556554 57899
Q ss_pred EEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccc
Q 001396 641 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 720 (1086)
Q Consensus 641 ~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 720 (1086)
.+|+..+.. |..
T Consensus 396 ~v~d~~~~~-------~~~------------------------------------------------------------- 407 (543)
T 1nir_A 396 SLIGTDPKN-------HPQ------------------------------------------------------------- 407 (543)
T ss_dssp EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence 999987520 000
Q ss_pred ccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCee
Q 001396 721 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 800 (1086)
Q Consensus 721 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 800 (1086)
+...+ +.+.. .+...+.
T Consensus 408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~ 424 (543)
T 1nir_A 408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL 424 (543)
T ss_dssp ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence 00000 00000 1334456
Q ss_pred EEEeecCCCEEEEEe--------CCeEEEEEccCceEE-EEE--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001396 801 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D 858 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~ 858 (1086)
.++++||+++|+++. +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 688889998888876 468999999988876 443 35577899999999 788877653 4
Q ss_pred CCeEEEEEcCCceeEEEecccc
Q 001396 859 DSTILIYNARSSEVISKLEGHS 880 (1086)
Q Consensus 859 dg~v~iwd~~~~~~~~~l~~h~ 880 (1086)
|+.|.|||..+++++.+++.+.
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCTT
T ss_pred CCeEEEEECCCceEEEeecCCC
Confidence 7999999999999999988643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-28 Score=271.62 Aligned_cols=275 Identities=7% Similarity=-0.015 Sum_probs=181.0
Q ss_pred eeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 400 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-- 400 (1086)
....|...+....++++++ +||+|+.|++|+|||+.+++......+ ..+.||.+.|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~ 148 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVY 148 (393)
T ss_dssp ECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEcccc
Confidence 3445666667777778886 699999999999999999876543211 23789999999999998
Q ss_pred ------CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 401 ------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 401 ------dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++....
T Consensus 149 ~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 149 SADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp CTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC----
T ss_pred ccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccc
Confidence 89999999999999999998876544 46689999999999999865 799999999999999999988766
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEe-cCCCEEEEEeeCCCCceeEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~i 553 (1086)
...+.......++.... ...........+...+.++.|+ +|++.+++++. ++.+++
T Consensus 225 ~~~~~~~~~~~~~s~~~-------------------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~v 281 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNT-------------------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLR 281 (393)
T ss_dssp ------CSCCCSEEEES-------------------GGGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEE
T ss_pred ccccCCcccceEEeccc-------------------ccceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEE
Confidence 65444333222221111 1111111223566678888887 79999999876 778999
Q ss_pred EeCCCCeeeeEEecccccCCceEE------------------EEEec--CCCEEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSV------------------VHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~------------------~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
||+.++.....+..+. ..+.. ..|+| ++.++++|+.||.|++||+.+++....+..+
T Consensus 282 wd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~ 358 (393)
T 4gq1_A 282 WNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL 358 (393)
T ss_dssp EEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC
T ss_pred EECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 9999887766665544 22222 22333 2335666889999999999999888777655
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 614 GGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 359 ~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 359 G--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp S--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred C--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 4 3699999999999999998776 555554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=265.99 Aligned_cols=324 Identities=13% Similarity=0.079 Sum_probs=203.6
Q ss_pred eecCCCceEEEEEeccCcEEEEecCCCce-----eeeeeeeeeecccccee-----eeeeeecCCCccEEEEEECCCCCE
Q 001396 335 DFHPVQHTLLLVGTNVGDTGLWDVNSGQK-----LFIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 335 ~~spdg~~lla~gs~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
..+|++..++++|. ++.|.+|+...... ........|........ ........|...+....+++++.+
T Consensus 25 ~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T 4gq1_A 25 SQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLF 103 (393)
T ss_dssp TTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEE
T ss_pred CCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCE
Confidence 33666666666664 68899998643211 11111222221110000 001123345555666666778889
Q ss_pred EEEEeCCCEEEEEEecCCCccc--cceEeccccccEeEEEecC--------CCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~--------d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||+.++.++..
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeee
Confidence 9999999999999999886533 2224679999999999998 777 899999999999999999998888
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEE
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 554 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iw 554 (1086)
+.+|..+|.+++|+|. +..+|++++.||+|++||+.+++.......+........+++
T Consensus 182 ~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~--------------------- 239 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL--------------------- 239 (393)
T ss_dssp EEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE---------------------
T ss_pred ecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec---------------------
Confidence 8899999999999764 335899999999999999988766554433222111111111
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC----------------CC
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----------------LP 617 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----------------~~ 617 (1086)
+...........+|. ..+.++.|+ ++++.+++++.|+++++||+..++....+..+.. ..
T Consensus 240 ~~~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 240 NTLPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp ESGGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred ccccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence 111111111223344 778888887 8999999999999999999988776555433211 01
Q ss_pred CCceEEEec--CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 618 ENPRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 618 ~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
......++| ++.++++|+.||.|++||..++........|...|.+++|+ |||++|
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs----------------------pdG~~L 374 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH----------------------QDGSHL 374 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC----------------------TTSSEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc----------------------CCCCEE
Confidence 122334444 34466778889999999999998888888899999999996 788999
Q ss_pred eeccccCccceeee
Q 001396 696 ISVEAENKSEVEKP 709 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~ 709 (1086)
++++.+| +.+|++
T Consensus 375 A~as~~G-v~lvrL 387 (393)
T 4gq1_A 375 AIATEGS-VLLTRL 387 (393)
T ss_dssp EEEESSE-EEEEEE
T ss_pred EEEeCCC-eEEEEE
Confidence 9887655 555554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=255.61 Aligned_cols=306 Identities=9% Similarity=0.033 Sum_probs=241.4
Q ss_pred CCCceEeeecCCCceEEEEEe----ccC----cEEEEec--CCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
...|...+|++.|..++++|+ .|| +|+|||+ .+++++.... +.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence 357899999999987788887 357 8999999 9998774322 556777777777
Q ss_pred ECC--------------CCCEEEEEeCC------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC
Q 001396 398 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 398 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677777654 799999998543 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEE-EEEcCCe--EEEEEcCCCceeEEecCCCCceEEEEE
Q 001396 458 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY 531 (1086)
Q Consensus 458 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~ 531 (1086)
++ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 5667888999999955 677777 6666654 99999988665 456667778999999
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---CcEEEEEcCCCeeEE
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT 608 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~ 608 (1086)
+|||++|++++. .++...|++||+.+++.. .+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++..
T Consensus 275 spdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 275 FPDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp CTTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred CCCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 999999998874 233558999999888643 333333 678899999999999987754 58999999998774
Q ss_pred EEcCCCCCCCCceEEEecCCCEEEEEECCC---cEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 609 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
.+..+. .+.+++|+|+|++|++++.++ .|++|++. +.....+..+...|.+++|+|..
T Consensus 349 ~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 349 VLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 343332 588999999999999988877 79999987 55667788899999999999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-24 Score=261.96 Aligned_cols=303 Identities=13% Similarity=0.073 Sum_probs=214.9
Q ss_pred CCCceEeeecCCCceEEEEEec-cC-----cEEEEecCCCceeeeeeeeeeec-----cccceeeeeeeecCCCccEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDI-----GACSMLFKTALVRDPGVSVNRV 396 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~-dg-----~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~V~~l 396 (1086)
...|.+++|||||++ |++++. |+ .|.+||+.+++............ ...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 347999999999996 777776 88 89999999998654321100000 0000000000000001348899
Q ss_pred EECCCCCEEEEEeCCCEEEEEEecCCC--ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 397 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 397 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 233 3567888899999999999 677776 56999999999877655
Q ss_pred eecCCcc----------------eEEEeecccCCccEEEEEEcCC---------------------------------eE
Q 001396 475 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 505 (1086)
Q Consensus 475 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~i 505 (1086)
...+... +.+++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 366777 55788899988776 78
Q ss_pred EEEEcCC-CceeEEec--CCCCceEEEEEecCCCEEEEEee-CCCCceeEEEEeCCCCeeeeEEecccccCC---ceEEE
Q 001396 506 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 578 (1086)
Q Consensus 506 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~ 578 (1086)
.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||+.+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8999988 76554433 35567899999 99999997764 23346789999999998877776654 12 45688
Q ss_pred EEecCCCEEEEEECCCcEEEEEcC-CCeeEEEEcCCCCCCCCceE-EEecCCCEEEEEEC-CC--cEEEEECC
Q 001396 579 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 646 (1086)
Q Consensus 579 ~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~ 646 (1086)
+|+|||+.+++++.+|.++||.+. ++. ...+..+ ...+..+ .|+|+|+.++..+. ++ .+++|++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988888999988888775 344 5555443 2346666 59999998765554 44 78888865
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-24 Score=241.00 Aligned_cols=306 Identities=13% Similarity=0.115 Sum_probs=228.8
Q ss_pred cccEeEEEecCCCCcEEEEEEe----CCC----cEEEEeC--CCCcee--EEeecCCcceEEEeeccc------------
Q 001396 435 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 490 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~------------ 490 (1086)
...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356788899999886 676776 567 8999999 999987 558899988888776542
Q ss_pred CCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 491 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 491 ~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 114466666654 7999999975 44556666778999999999999999988532 2468999999998875 4
Q ss_pred EecccccCCceEEEEEecCCCEEE-EEECCCc--EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CC--
Q 001396 565 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-- 638 (1086)
Q Consensus 565 ~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-- 638 (1086)
+..+. ..+.+++|+|||++|+ +++.++. |++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 99999998876 344333 245789999999999988876 34
Q ss_pred cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccc
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 718 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~ 718 (1086)
.|++||+.++.... +
T Consensus 292 ~i~~~d~~~~~~~~-l---------------------------------------------------------------- 306 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-I---------------------------------------------------------------- 306 (415)
T ss_dssp EEEEEETTSSCCEE-C----------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-E----------------------------------------------------------------
Confidence 45555554331100 0
Q ss_pred ccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCC
Q 001396 719 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 798 (1086)
Q Consensus 719 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 798 (1086)
. .+...
T Consensus 307 ------------------------------------------------------------------------~--~~~~~ 312 (415)
T 2hqs_A 307 ------------------------------------------------------------------------T--WEGSQ 312 (415)
T ss_dssp ------------------------------------------------------------------------C--CSSSE
T ss_pred ------------------------------------------------------------------------e--cCCCc
Confidence 0 02234
Q ss_pred eeEEEeecCCCEEEEEe-C---CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCce
Q 001396 799 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 871 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~ 871 (1086)
+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. +.
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 55677788888777765 2 47999999988774 455454 899999999 899998888777 89999997 56
Q ss_pred eEEEeccccCCeEEEEEeCCCC
Q 001396 872 VISKLEGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 872 ~~~~l~~h~~~v~~l~~spdg~ 893 (1086)
....+.+|.+.|.+++|+|.-.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEeeCCCCCCcCCccccccc
Confidence 6788899999999999999643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=253.97 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=235.5
Q ss_pred cccEeEEEecCCCCcEEEEEEeC-CC-----cEEEEeCCCCceeEEeecCCc------------------------ceEE
Q 001396 435 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGA------------------------PVYS 484 (1086)
Q Consensus 435 ~~~v~~v~~s~d~~~l~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~ 484 (1086)
...+.+++|+|||+ .|++++. |+ .|++||+.+++....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 899999999998777765543 2777
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 888 557889998886 999999998873 3445556667899999999999999886 347999999998776
Q ss_pred eEEecccc-------------cCCceEEEEEecCCCEEEEEECCC---------------------------------cE
Q 001396 563 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 596 (1086)
Q Consensus 563 ~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~s~dg---------------------------------~i 596 (1086)
+....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 55443320 001147799999999999987665 78
Q ss_pred EEEEcCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-----CCcEEEEECCCCCeeeeccccccceeeeEEccCC
Q 001396 597 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 597 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.+++.......+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET------------- 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence 9999988 876554332123345788999 99999987764 345666766654322111100
Q ss_pred CceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc
Q 001396 671 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 750 (1086)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 750 (1086)
.+
T Consensus 332 -----------------------------------------------------------------------------~~- 333 (741)
T 2ecf_A 332 -----------------------------------------------------------------------------SP- 333 (741)
T ss_dssp -----------------------------------------------------------------------------CS-
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred eeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEcc-Cce
Q 001396 751 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 828 (1086)
Q Consensus 751 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~-~~~ 828 (1086)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0001233567788887666665 4666666554 344
Q ss_pred EEEEEcCCCCCeEEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-ceeEEEeccccCCeEEEEEeCCCCEEEEEeCC--
Q 001396 829 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 901 (1086)
Q Consensus 829 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~v~iwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-- 901 (1086)
...+..+...+..+ +|+| +++.|+ +++.++ .++||++.. +.....+.. ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 66777777888887 5999 776664 555555 899999874 555667765 6678999999999998876544
Q ss_pred --CcEEEEECCCC
Q 001396 902 --AQIFVWDVDGW 912 (1086)
Q Consensus 902 --g~i~iwd~~~~ 912 (1086)
..+.+|+..+.
T Consensus 448 ~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 448 TPPQIELFRANGE 460 (741)
T ss_dssp EEEEEEEEETTSC
T ss_pred CCCeEEEEEcCCC
Confidence 46889998654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=258.55 Aligned_cols=310 Identities=9% Similarity=0.079 Sum_probs=223.6
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc---cEEEEEECCCCCEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 406 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 406 (1086)
.+.+++|||||++ +++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 5788999999984 666 6889999999999986543 445554 499999999999999
Q ss_pred EEeCC---------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 407 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 407 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
+++.+ +.+++||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7899999999875 22223345666699999999999 5777764 7999999999988776655
Q ss_pred CCcce------------------EEEeecccCCccEEEEEEcCC----------------------------------eE
Q 001396 478 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 505 (1086)
Q Consensus 478 h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i 505 (1086)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67788 55788898887653 79
Q ss_pred EEEEcCCCceeEEecCC------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce----
Q 001396 506 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 575 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 575 (1086)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999988765555543 45789999999999987776544456789999999998877665432 1333
Q ss_pred EEEEEecCCCEEEE--EECCC------cEEEEE-cCCCee--EEEEcCCCCCCCCce-EEEecCCCEEEEEECC---CcE
Q 001396 576 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 640 (1086)
Q Consensus 576 ~~~~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 640 (1086)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 344441 3333321 122333 6899999999877665 789
Q ss_pred EEEECCCCC--eeeeccc---cccceeeeEEccCC
Q 001396 641 KILETPESN--SVDAAGV---LSDNLRKLSVNPIS 670 (1086)
Q Consensus 641 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~p~~ 670 (1086)
++|++.... ....+.. +...+..++|+|++
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 999986432 2333332 34556667776443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-23 Score=252.84 Aligned_cols=386 Identities=11% Similarity=0.077 Sum_probs=254.6
Q ss_pred ceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC---------Cc
Q 001396 525 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 595 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~ 595 (1086)
...+++|+|||+++++ +. ++.|++||+.+++....+..+......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997655 32 5689999999999888877665211258999999999999998764 78
Q ss_pred EEEEEcCCCeeEEEEcC-CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCcee
Q 001396 596 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 674 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 674 (1086)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++........+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999886 33332 222334788999999999999987 799999998775544332211110
Q ss_pred ccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ceeE
Q 001396 675 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 753 (1086)
Q Consensus 675 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 753 (1086)
+..|.. -|-.+ ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999888765 4566
Q ss_pred EeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEE
Q 001396 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 833 (1086)
Q Consensus 754 vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~ 833 (1086)
+|++.... + .+...+..+.|+++|.. ..+..|++||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 66543210 0 02234678888888863 22357999999998866666
Q ss_pred cCC------CCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCceeEEEecc-ccCCeE----EEEEeCCCCEEEE-
Q 001396 834 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS- 897 (1086)
Q Consensus 834 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~v~----~l~~spdg~~l~s- 897 (1086)
..+ ...+.+++||| ||++|++... +..|++||+.+++....+.. |.+.+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 35899999999987766654 334443 7899999998775
Q ss_pred -EeCCC------cEEEEE-CCCCceeeeeeeeccCCCccCCCCceE-EEEecCCCEEEE-EeC---CeEEEEEcCCcc--
Q 001396 898 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 962 (1086)
Q Consensus 898 -~s~dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~~-~~d---~~i~vwd~~~~~-- 962 (1086)
...++ .|.+|| ..++.... ......+.. .+.. ++|||||+.|+. +.+ +.+++|++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45677 466677 33332000 011111222 2444 699999999986 444 679999987432
Q ss_pred ceeccccC--CccCEEEEEEeCCCCEEEEEECC-C--cEEEEEcCCCceeeee
Q 001396 963 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 963 ~~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~D-g--~v~vWd~~~~~~~~~~ 1010 (1086)
....+... |...+..++|||||++|+..... . .+.+++..++..+..+
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23322222 66778999999999988865432 2 2445666566554443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-22 Score=217.38 Aligned_cols=280 Identities=10% Similarity=0.057 Sum_probs=206.3
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-CC
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 412 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 412 (1086)
..|++++++++++++.++.|.+||..+++.+.. ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777778899999999999999999987754 22344556 9999999997777665 88
Q ss_pred EEEEEEecCCCc-cccceEeccccccEeEEEecCCCCcEEEEEEeCC-C--cEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 413 IVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 413 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 4455666665699999999 56655444 3 8999999999998887654 446888885
Q ss_pred ccCCccEE-EEEEcCCe-EEEEEcCCCceeE----EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee-
Q 001396 489 AKENIHFI-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 561 (1086)
Q Consensus 489 ~~~~~~~l-~s~s~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~- 561 (1086)
+ +|+++ ++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 5 66544 45556688 9999988654432 22234456789999999998776653 266899999999988
Q ss_pred --eeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCee--EEEEcCC----CC-CCCCceEEEecCCCEE
Q 001396 562 --KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLL 631 (1086)
Q Consensus 562 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l 631 (1086)
+..+... ..+..++|+|+++++++++ .++.|.+||+.+++. +..+... .. ......++|+|+|++|
T Consensus 212 ~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 212 TLLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp EEEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ceeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 6666643 4678899999999887765 578899999999887 4443322 11 1112458999999988
Q ss_pred EEEEC-CCcEEEEECCCC
Q 001396 632 AVIAN-ENRIKILETPES 648 (1086)
Q Consensus 632 ~~~~~-dg~i~iw~~~~~ 648 (1086)
++++. ++.|.+|++...
T Consensus 288 ~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 288 FISANISRELKVFTISGK 305 (331)
T ss_dssp EEEETTTTEEEEEETTSC
T ss_pred EEecCCCCcEEEEEecCC
Confidence 77665 569999999864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-21 Score=214.47 Aligned_cols=274 Identities=11% Similarity=0.086 Sum_probs=213.5
Q ss_pred CCceEeeecCCCceEEEEEec------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 329 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
..+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999975444433 6789999999998775421 12347789999999
Q ss_pred CEEEEE-eCCCEEEEEEecCCCccccceEeccccc---------cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee
Q 001396 403 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472 (1086)
Q Consensus 403 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~ 472 (1086)
++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 966655 5578999999999876553 333322 278899999999532222246889999999999999
Q ss_pred EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC----CCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 473 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 473 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
..+..+...+..++|+ +++.++++++.++.|.+||..+++....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 8887666668888885 4777899999999999999999887766654 3446788999999998877753 25
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 627 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 627 (1086)
+.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 789999999999888877533 25689999999777766 68999999999999988887543 3689999999
Q ss_pred CCEEEEEECCC
Q 001396 628 GTLLAVIANEN 638 (1086)
Q Consensus 628 ~~~l~~~~~dg 638 (1086)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99888776654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-21 Score=236.61 Aligned_cols=238 Identities=9% Similarity=-0.008 Sum_probs=166.8
Q ss_pred EEEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-ccceEecccc-----------------ccEeEEEecCCCCcEEEEE
Q 001396 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~v~~s~d~~~l~l~s 454 (1086)
+..+.|+ |..+++++.++ | +||+.+++.+ +. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457787 66777777888 8 9999998763 32 22332 46999999999 5 3443
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-----CceeEEecCCCCc----
Q 001396 455 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 525 (1086)
Q Consensus 455 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~---- 525 (1086)
+. ++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 6999999998887654 44567778888885 477788884 789999999988 6665544333332
Q ss_pred ----------eEEEEEecCCCEEEEEeeC-----------------------------CCCceeEEEEeCCCCeeeeEEe
Q 001396 526 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 526 ----------i~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
+.+++|+|||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988732 1246789999999988655443
Q ss_pred cccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeEEEEc-CC--CCCCCCceEEEec--CCCEEEEEEC
Q 001396 567 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AG--GGLPENPRICFNK--NGTLLAVIAN 636 (1086)
Q Consensus 567 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~v~~s~--~~~~l~~~~~ 636 (1086)
.. .+...+..++|+|||++|++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..
T Consensus 253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 21 1236789999999999999987665 89999999983333332 11 1111246789999 9988888888
Q ss_pred CCcEEEEECC
Q 001396 637 ENRIKILETP 646 (1086)
Q Consensus 637 dg~i~iw~~~ 646 (1086)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8877777654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=209.79 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=194.1
Q ss_pred CceEEEEEeccCcEEEEecC-CCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001396 340 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 417 (1086)
Q Consensus 340 g~~lla~gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~~i~iw 417 (1086)
+++++++++.|+.|.+||+. +++..... ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 34566676889999999995 34322111 12366789999999999999998876 899999
Q ss_pred Eec--CCCccccceEeccccccEeEEEecCCCCcEEEEE-EeCCCcEEEEeCC---CCceeEEeecCCcceEEEeecccC
Q 001396 418 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 418 d~~--~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s-~~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
++. +++. .....+..+. .+.+++|+|+|+ .+++ +..++.|.+||+. +++.+..+..+ ..+.+++|+ +
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~ 138 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--P 138 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--T
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--C
Confidence 998 5442 2222343333 789999999999 4544 4458899999994 44455555543 457788885 4
Q ss_pred CccEEEEEE-cCCeEEEEEcCC-CceeE----EecC-CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC--Cee-
Q 001396 492 NIHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI- 561 (1086)
Q Consensus 492 ~~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~- 561 (1086)
++.++++++ .++.|++||+.. ++... .... ....+..++|+|+++++++++. .++.|.+||+.. ++.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence 667777777 899999999987 44322 2222 3447888999999998876652 266899999953 433
Q ss_pred -eeEEeccc---ccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcC--C--CeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 562 -KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 562 -~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
........ .....+..++|+|++++++++. .++.|.+||+. + .+.+..+..+. .+..++|+|+|++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLI 292 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEE
Confidence 22222111 1123567899999999888654 78999999998 3 34444554432 278999999999988
Q ss_pred EEE-CCCcEEEEECC
Q 001396 633 VIA-NENRIKILETP 646 (1086)
Q Consensus 633 ~~~-~dg~i~iw~~~ 646 (1086)
+++ .++.|.+|++.
T Consensus 293 ~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 293 AAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTTCEEEEEEEE
T ss_pred EecCCCCeEEEEEEc
Confidence 888 57999999554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=238.69 Aligned_cols=324 Identities=9% Similarity=0.073 Sum_probs=220.6
Q ss_pred EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCC-----------------cceEEEeecccCCccEEEEE
Q 001396 438 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 438 v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 499 (1086)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|++ |+ .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG--RG-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT--TT-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC--CC-eEEEE
Confidence 5567888 55 466677777 8 9999999873 4443443 4689999966 43 44444
Q ss_pred EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-----CeeeeEEecccc----
Q 001396 500 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 570 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~---- 570 (1086)
.++.|++||+.+++.... ..+...+.+++|+|||++|+++. ++.|++||+.+ ++..+.......
T Consensus 99 -~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 459999999988765443 34456688899999999999864 56899999998 776554443330
Q ss_pred -------cCCceEEEEEecCCCEEEEEE---------------------------------CCCcEEEEEcCCCeeEEEE
Q 001396 571 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 571 -------~~~~v~~~~~~~~~~~l~~~s---------------------------------~dg~i~iwd~~~~~~~~~~ 610 (1086)
+...+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001247899999999999987 4567999999998865544
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEECCC-----cEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeec
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 685 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 685 (1086)
....+...+..++|+|||++|++++.++ .|.+||..++.....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3323334578999999999999887665 77777776542111110
Q ss_pred CCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccC
Q 001396 686 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 765 (1086)
Q Consensus 686 ~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 765 (1086)
.....
T Consensus 302 -----------------------------------------------------------~~~~~---------------- 306 (706)
T 2z3z_A 302 -----------------------------------------------------------VETDK---------------- 306 (706)
T ss_dssp -----------------------------------------------------------EEECS----------------
T ss_pred -----------------------------------------------------------EccCC----------------
Confidence 00000
Q ss_pred cccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec--CCCEEEEEe-CCeEEEEEcc-CceEEEEEcCCCCCeE
Q 001396 766 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTAT 841 (1086)
Q Consensus 766 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~ 841 (1086)
.....+..++|+| ||+++++++ ++.++||++. +++.+..+..+...+.
T Consensus 307 ----------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 307 ----------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp ----------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred ----------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 0111234567888 888777765 5777777765 6677777777777787
Q ss_pred E-EEEcCCCCCEEEEEe-CCC----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEECCC
Q 001396 842 S-LAFNPHDNNVIAIGM-DDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDG 911 (1086)
Q Consensus 842 ~-l~~s~~d~~~lasg~-~dg----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d----g~i~iwd~~~ 911 (1086)
. ++|+| +++.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|++||+.+
T Consensus 359 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 6 89999 777665544 444 67777887765 34444 67779999999999998876443 4699999988
Q ss_pred Cc
Q 001396 912 WG 913 (1086)
Q Consensus 912 ~~ 913 (1086)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 65
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=206.34 Aligned_cols=205 Identities=10% Similarity=0.164 Sum_probs=143.6
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEEc---cCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-c
Q 001396 798 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 870 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~ 870 (1086)
.+..++|+|+|+++++++ ++.|.+||+ .+.+....+.. ...+.+++|+| +++++++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 578999998 44455555553 34688999999 888777777 899999999987 6
Q ss_pred eeEE----Eecc-ccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCC--CceeeeeeeeccCCCccCCCCceEEEEecCC
Q 001396 871 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 871 ~~~~----~l~~-h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 942 (1086)
+... .+.. ....+.+++|+|++++|++++ .++.|.+|+++. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2232 334788999999999776554 789999999954 4332222333222111111246689999999
Q ss_pred CEEEEE--eCCeEEEEEcC--Cc--cceeccccCCccCEEEEEEeCCCCEEEEEE-CCCcEEEEEcC--CCce
Q 001396 943 TRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEAS--NLEV 1006 (1086)
Q Consensus 943 ~~l~~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~-~Dg~v~vWd~~--~~~~ 1006 (1086)
++|+++ .++.|.+||+. ++ +.+.. ...+. .+..++|+|||++|++++ .|+.|.+|+++ +++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 988863 57899999998 33 33333 22223 388999999999988887 57999999554 5644
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-20 Score=207.63 Aligned_cols=279 Identities=10% Similarity=0.058 Sum_probs=208.1
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc-cEEEEEECCCCCEEEE-EeCCCEEEEEEec
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH 420 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~las-~~~d~~i~iwd~~ 420 (1086)
++++++.++.|.+||+.+++.+.... .++.. .+..++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 58899999999999999998775421 12222 4788999999987654 5567899999999
Q ss_pred CCCccccceEecc---ccccEeEEEecCCCCcEEEEEEe------------CCCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 421 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 421 ~~~~~~~~~~~~~---h~~~v~~v~~s~d~~~l~l~s~~------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98765432 1111 233678899999999 555554 579999999999988887764 4557778
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc-----------------
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE----------------- 548 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~----------------- 548 (1086)
+|+ +++.+|+++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+... +.
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP 214 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence 884 466777777 68999999998887766654431 11237899998776544211 11
Q ss_pred ----eeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 549 ----SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 549 ----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
..|.+||+.+++.. ...... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|
T Consensus 215 ~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp GGEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 15799999998775 322211 12578899999999999988 7999999999999888876543 3689999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 625 NKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
+|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999998999999999999887766653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-20 Score=205.38 Aligned_cols=279 Identities=13% Similarity=0.089 Sum_probs=203.4
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeeccccccceee
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 663 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 663 (1086)
+++++++.++.|++||+.+++.+..+........+..++|+|+|+.++++ ..++.|.+||+.+++.+..+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 47889999999999999999998888754311126889999999876554 45789999998876544322100000
Q ss_pred eEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceE
Q 001396 664 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 743 (1086)
Q Consensus 664 ~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 743 (1086)
.+
T Consensus 79 --------------------------------------------------------------~~---------------- 80 (337)
T 1pby_B 79 --------------------------------------------------------------ER---------------- 80 (337)
T ss_dssp --------------------------------------------------------------EE----------------
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE---------
Q 001396 744 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 814 (1086)
Q Consensus 744 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--------- 814 (1086)
...+..++|+|||++++++
T Consensus 81 ----------------------------------------------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 81 ----------------------------------------------------VKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp ----------------------------------------------------EECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred ----------------------------------------------------cccccceEECCCCCEEEEEecccccccc
Confidence 0012234555555555554
Q ss_pred ----eCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeC
Q 001396 815 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 890 (1086)
Q Consensus 815 ----~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp 890 (1086)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~ 183 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQP 183 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCC
Confidence 358899999999998887764 45678899999 88877777 68899999999998877765441 11237899
Q ss_pred CCCEEEEEeCCC------------------------cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEE
Q 001396 891 ALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 946 (1086)
Q Consensus 891 dg~~l~s~s~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 946 (1086)
||+.++..+.++ .|.+||+.+++... ..+.. +. ..+..++|+|||++++
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTRAF 256 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSEEE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCEEE
Confidence 998776554332 46899999876541 11111 11 2477899999999998
Q ss_pred EEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 947 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 947 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++||+.+++.+..+.
T Consensus 257 ~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 257 GA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ee-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 88 79999999999887765443 3467899999999999999999999999999999988876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-20 Score=201.86 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=143.8
Q ss_pred EEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCCce-eEE
Q 001396 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-RVD 518 (1086)
Q Consensus 441 v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~~~ 518 (1086)
..|.++++. ++++++.++.|.+||+.+++.+..+..+...+ .++|++ +++++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 456677665 68888899999999999999988887776667 888854 6666666555 89999999998887 556
Q ss_pred ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-ECCCc-E
Q 001396 519 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHV-I 596 (1086)
Q Consensus 519 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~-i 596 (1086)
+..+..+..+++|+|+|+++++... ..+...|.+||+.+++.+..+.... ....++|+|+|++++++ ..++. |
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEEEETTTTEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEEecCCCceE
Confidence 6555555555999999999994432 2122389999999999888776543 56899999999876665 56688 9
Q ss_pred EEEEcCCCeeE-----EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 001396 597 KIWDMNKVQLL-----TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPES 648 (1086)
Q Consensus 597 ~iwd~~~~~~~-----~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~ 648 (1086)
.+|++.....+ ..+.. ......++|+|+|+++++++ .++.|.+||+.++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEEEECCCCcEeecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99998764332 12211 12367899999998666555 5788999987755
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=202.67 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=196.8
Q ss_pred ccEEEEEECCCCCEEEEEeC-------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 391 VSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
..+..++|+|||++|++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. ++++...++.|.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEEE
Confidence 56889999999999988874 56899999999876553 22 2345788999999995 4556667899999
Q ss_pred EeCCCCceeEEeecCCcc---------eEEEeecccCCccEEEEEE--cCCeEEEEEcCCCceeEEecCCCCceEEEEEe
Q 001396 464 WDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 532 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s 532 (1086)
||..+++.+..+..+... +..++|++ ++.++++++ .++.|.+||..+.+....+......+..++|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 999999998888765432 67788854 666666665 48899999999988888777566668889999
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-cCCceEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeeEEEE
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTI 610 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~ 610 (1086)
|+|++++++.. ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..+
T Consensus 194 ~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 194 SEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp TTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999998864 66799999999998888765221 2356888999999998887765 499999999999998888
Q ss_pred cCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeee
Q 001396 611 DAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 653 (1086)
Q Consensus 611 ~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 653 (1086)
.... ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus 270 ~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 270 AAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp ECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 7543 25799999999776666 689999999987755443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-21 Score=205.76 Aligned_cols=257 Identities=14% Similarity=0.115 Sum_probs=188.1
Q ss_pred EEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecC-CCc
Q 001396 346 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 424 (1086)
Q Consensus 346 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~ 424 (1086)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44568999999999887653 334788999999999999999986 77999999998 765
Q ss_pred cccceEeccc-cccEeEEEecCCCCcEEEEEEe--CCCcEEE--EeCCCCceeEEeecCCcceEEEeecccCCccEEE-E
Q 001396 425 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 498 (1086)
Q Consensus 425 ~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s~~--~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s 498 (1086)
.. ....| ...+.+++|+|||+ .+++++ .++...| |+..+++ ...+..+. .+..++|++ +++.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46889999999999 677777 3344444 5555554 44554443 488888854 666666 7
Q ss_pred EEcCCeEEEEEcCCC-ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEecccccCCceE
Q 001396 499 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 576 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 576 (1086)
++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++.. ++.+.+|++. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445566667789999999999998877631 3346666654 344555666555 6788
Q ss_pred EEEEecCCCEEEEEECC-----------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 577 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999988765 569999999887644433222234578899999999998887653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=232.77 Aligned_cols=377 Identities=12% Similarity=0.043 Sum_probs=243.8
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC---------CCcEEE
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 598 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i 598 (1086)
+++|+|||++++++ . ++.|++||..+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999665543 2 567999999999988777765411124889999999999998876 789999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc-ccccceeeeEEccCCCceeccc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++....... ++..
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------ 152 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------------------
Confidence 999998873111111 2478899999999999986 6899999998775433211 0000
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ceeEEee
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWR 756 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~ 756 (1086)
.+..|..+ .++.- .-.....+++|||||+.|+.++.+ +.+.+|.
T Consensus 153 ----------------~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 153 ----------------KIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp ----------------TEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEE
T ss_pred ----------------CeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEE
Confidence 00000000 00000 001223578999999999988765 4555554
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEE---E--
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI---L-- 831 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~---~-- 831 (1086)
+.... . .+...+..+.+...|.. .....|++||+.+++.. .
T Consensus 198 ~~~~~--------------------~-----------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 198 YSYYG--------------------D-----------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp EEECC--------------------S-----------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECC
T ss_pred eeccC--------------------C-----------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEcc
Confidence 32110 0 02223445555554431 11347999999987642 1
Q ss_pred ---EEcCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCceeEEEe----ccccCCeE-----EEEEeCC
Q 001396 832 ---TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDA 891 (1086)
Q Consensus 832 ---~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd----~~~~~~~~~l----~~h~~~v~-----~l~~spd 891 (1086)
.+.+|...+.+++||| |++++++.... ..|.+|| +.+++....+ .+|.+.+. .++||||
T Consensus 244 ~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1235777899999999 78887775433 2588999 8888776666 46777776 8999999
Q ss_pred CCEEEE--EeCCC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeC-----CeEEEEEcCC-
Q 001396 892 LNILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE- 960 (1086)
Q Consensus 892 g~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~~i~vwd~~~- 960 (1086)
|+.|+. ...+| .|.+||+.+++.. .+ ..+. ..+..+.++ +++.|+. +.+ +...+|.+..
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~---~l--t~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAI---QI--TSGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCE---EC--SCSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceE---ec--ccCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 996654 44555 5677777665421 11 1111 146778888 8888877 443 6788887753
Q ss_pred -ccc-eecc---ccCCccCEEEEEEeCCCCEEEEE-ECC--CcEEEEEcCCCceeeeec
Q 001396 961 -LTC-LKQW---FPISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 961 -~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~s~-~~D--g~v~vWd~~~~~~~~~~~ 1011 (1086)
+.. ...+ +.+|...+..+.||+||++++.. +.+ ..+.+||+.+++....+.
T Consensus 393 ~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 393 SYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 1211 22366788899999999877744 333 468999998888655444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=223.66 Aligned_cols=272 Identities=12% Similarity=0.072 Sum_probs=198.4
Q ss_pred CCCceEeeecCCCceEEEEEec-cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEECCCCCEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL 405 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 405 (1086)
..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +++
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 458999999999996 666665 9999999997766543 34454 68999999999 777
Q ss_pred EEEeC---CCEEEEEEecC--CCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 406 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 406 as~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++++. +....||.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence 77765 45566766654 22112 222222 34467899999875666666555 4599999987665554333
Q ss_pred ceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 481 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
.+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 666774 578899988877 78999999887765 55667778899999999999995433 33458999999
Q ss_pred CCCeeeeEEecccccCCceEEEE--------EecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
.+++.. .+.++. ..+..++ |+|||..+++++.++.+++|++ ++..... ...+.+++|+ ++
T Consensus 226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg 293 (582)
T 3o4h_A 226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RG 293 (582)
T ss_dssp TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TT
T ss_pred CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CC
Confidence 998877 666554 5555566 9999988888999999999999 6655421 1347789999 99
Q ss_pred CEEEEEECCCc---EEEEECC
Q 001396 629 TLLAVIANENR---IKILETP 646 (1086)
Q Consensus 629 ~~l~~~~~dg~---i~iw~~~ 646 (1086)
+++++++.+.+ +.+|+..
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTC
T ss_pred EEEEEEcCCCCCCeEEEEcCC
Confidence 99888877644 5556554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=196.92 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=181.8
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCC-CceeeeeeeeeeeccccceeeeeeeecCC-CccEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRV 396 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l 396 (1086)
.....+..|...|.+++|||||++ |++++ ++.|.+||+.+ ++.... ..+| ...|.++
T Consensus 32 ~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~ 90 (297)
T 2ojh_A 32 RKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNNDH 90 (297)
T ss_dssp TEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSCC
T ss_pred CceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccce
Confidence 344556778889999999999995 67665 78999999998 765532 3334 4788999
Q ss_pred EECCCCCEEEEEe--CCCEEEEEEe--cCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC-CCce
Q 001396 397 VWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSR 471 (1086)
Q Consensus 397 ~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~-~~~~ 471 (1086)
+|+|||++|++++ .++...||.+ .+++ .. .+..+ ..+..++|+||++. ++++++.|+.++||++. .+..
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCc
Confidence 9999999999998 3344555554 4443 22 23333 34899999999994 34477889999999853 2334
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcC-CCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC---
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--- 546 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--- 546 (1086)
...+..+...+.+++|++ ++..|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.
T Consensus 165 ~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp EEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 566777888999999955 667777665 59999999987 45556666777778999999999999998876432
Q ss_pred ----CceeEEEEeCCCCeeeeEE--ecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 547 ----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 547 ----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 2467999999988664433 3545 7888999999999998877543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=194.06 Aligned_cols=247 Identities=12% Similarity=0.142 Sum_probs=169.9
Q ss_pred CCCCeeEEEeecCCCEEEEEe---CCeEEEEEccCce--EEEEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001396 795 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 868 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 868 (1086)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567899999999444443 3789999998766 3444455677888999999 888888877 77999999996
Q ss_pred -Cc--eeEEEecc---------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeeeeeeeccCCCccCCCCceE
Q 001396 869 -SS--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 935 (1086)
Q Consensus 869 -~~--~~~~~l~~---------h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 935 (1086)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++......+....+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333321 12348899999999977777778899999998 444332222222222 24678
Q ss_pred EEEecCCCEEEEE--eCCeEEEEEcCC--ccceec-cccCC------ccCEEEEEEeCCCCEE-EEEECCCcEEEEEcCC
Q 001396 936 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASN 1003 (1086)
Q Consensus 936 ~~~s~dg~~l~~~--~d~~i~vwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l-~s~~~Dg~v~vWd~~~ 1003 (1086)
++|+|||++++++ .++.+.+|++.. ++.... ..... ...+..++|+|||++| ++...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 567899999874 442111 01111 1458899999999987 4555689999999973
Q ss_pred C---ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-CcEEEEccCCCC
Q 001396 1004 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPG 1058 (1086)
Q Consensus 1004 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d-g~v~vw~~~~~~ 1058 (1086)
. ..+..+. . ....+..++|+| |+++|++++.+ +.|.+|++....
T Consensus 272 ~g~~~~~~~~~------~----~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 272 DGHLTLIQQIS------T----EGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp GGCEEEEEEEE------C----SSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCcEEEeEEEe------c----CCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCC
Confidence 3 2232222 1 112356899999 78888887765 899999775443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=228.34 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=198.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc---cEEEEEECCCCCEEEEE
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~ 408 (1086)
..++|+|||+ +++++ .|++|++||+.+|+.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 3789999996 46654 589999999999986543 333333 48999999999999998
Q ss_pred eC---------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecC
Q 001396 409 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 478 (1086)
Q Consensus 409 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h 478 (1086)
+. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. ++.|++||+.+++..... .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998752101 12 24688999999999 566665 789999999988765432 233
Q ss_pred Ccce-----------------EEEeecccCCccEEEEEEcCC----------------------------------eEEE
Q 001396 479 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 507 (1086)
Q Consensus 479 ~~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~v 507 (1086)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 3222 36777 55888999988653 7889
Q ss_pred EEcCCCcee--EE------ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe----CCCCeeeeEE----eccccc
Q 001396 508 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 571 (1086)
Q Consensus 508 wd~~~~~~~--~~------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 571 (1086)
||+.+++.. .. +..+...+..++|+||++.+++..........|++|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999887652 12 2246667899999999887776544334456799999 8888776655 3444
Q ss_pred CCceE-----EEEEecCCCEEEE--EECCC--cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----
Q 001396 572 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 637 (1086)
Q Consensus 572 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 637 (1086)
..+. .+.|+|||+.++. ...+| .|++||+.+++ ...+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4555 7899999997655 33555 57777877766 3344322 2236677777 88888777765
Q ss_pred CcEEEEECCC
Q 001396 638 NRIKILETPE 647 (1086)
Q Consensus 638 g~i~iw~~~~ 647 (1086)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888888764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-19 Score=202.77 Aligned_cols=309 Identities=10% Similarity=0.014 Sum_probs=203.5
Q ss_pred ccCCCccceeeeeccCCCCceE-----eeecCCCceEEEEEeccCc--EEEEecCCCceeeeeeeeeeeccccceeeeee
Q 001396 312 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 384 (1086)
Q Consensus 312 ~~~~~p~~~~~~l~~h~~~V~~-----~~~spdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1086)
++.......+..|..|...+.. .+|||||++|+.++..++. |.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 3444445666777777766665 8999999974444443674 88889988876542
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEE--ecCCCCcEEEEE--------
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT-------- 454 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~--~s~d~~~l~l~s-------- 454 (1086)
..+|...+..++|||||++|++++.++.|++||+.+++... .+..+...+.... +++|++ .++.
T Consensus 76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~ 149 (388)
T 3pe7_A 76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW 149 (388)
T ss_dssp -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence 34555556578899999999999999999999999987543 2334444444343 489998 4543
Q ss_pred --------------EeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCc
Q 001396 455 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG 514 (1086)
Q Consensus 455 --------------~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~ 514 (1086)
.+.+..|.+||+.+++.. .+..+...+..++|+|. ||..|+..+.+ ..|.++|.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 224578999999998754 44456777888888541 66778777653 367778876655
Q ss_pred eeEEecCCC-CceEEEEEecCCCEEEEEeeCC-CCceeEEEEeCCCCeeeeE--EecccccCCceEEEEEecCCCEEEEE
Q 001396 515 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA 590 (1086)
Q Consensus 515 ~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~ 590 (1086)
......... ..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|||+.|+..
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence 443333332 3577899999999887665432 2234599999999875332 22210000001123699999988764
Q ss_pred ---------ECCCcEEEEEcCCCeeEEEEcCCCCCC--------CCceEEEecCCCEEEEEEC-CCcEEEEECC
Q 001396 591 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 646 (1086)
Q Consensus 591 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 646 (1086)
..+..|++||+.+++............ .+..++|+|||+.|+..+. ++...+|.+.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456789999999987654433322100 3678899999998887764 6666666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-19 Score=216.67 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=186.9
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCc-----cEEEEEECCCCC
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS 403 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 403 (1086)
.....++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence 3567899999997 57776 89999999999986543 444543 234589999999
Q ss_pred EEEEEeCC---------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 404 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 404 ~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+||+++.+ +.+.+||+.+++... +..|.+.+..++|||||+ .|+.+. |+.|++||+.+|+..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence 99999876 567799999987543 567788899999999999 566664 78999999988875532
Q ss_pred -eecCCcce-----------------EEEeecccCCccEEEEEEcCCe-EEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 475 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 475 -~~~h~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 22332222 23566 568889988876655 8888764221100 123355667777766
Q ss_pred CEEEEEeeCCCCceeEEEEeCCC---Ce--eeeEEeccc---ccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK 603 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~ 603 (1086)
.. .....|++||+.+ ++ ....+.... .+...+..++|+|||+.++... .+..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 1244699999998 73 222333210 1236789999999998766643 234799999998
Q ss_pred Ce----eE--EEE--cCCCCCCC---CceEEEecCCCEEE-EEEC-C--CcEEEEECCCCC
Q 001396 604 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 649 (1086)
Q Consensus 604 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~ 649 (1086)
++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|.+|+..++.
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 87 21 111 22221111 23789999999887 6654 3 357777776543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-17 Score=184.95 Aligned_cols=310 Identities=12% Similarity=0.120 Sum_probs=196.1
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeC--CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC----CcEEEEEcCC--C
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 604 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~--~ 604 (1086)
+...+++.++....+++.|++|++ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 344566666554444566777755 5565543333233 677889999999999998876 7999998875 4
Q ss_pred eeE--EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCe
Q 001396 605 QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 681 (1086)
Q Consensus 605 ~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~ 681 (1086)
+.. ....... .....+++ ++++++++. .++.|.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------- 138 (361)
T ss_dssp EEEEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-------------------------
T ss_pred cEEEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce-------------------------
Confidence 433 2332222 23455666 788777776 578899999864322211100
Q ss_pred eeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCc
Q 001396 682 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 761 (1086)
Q Consensus 682 ~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 761 (1086)
. +...+. +
T Consensus 139 ----------------------------------------------------~-~~~~g~--------~----------- 146 (361)
T 3scy_A 139 ----------------------------------------------------V-IEFKGS--------G----------- 146 (361)
T ss_dssp ----------------------------------------------------E-EECCCC--------C-----------
T ss_pred ----------------------------------------------------e-EEccCC--------C-----------
Confidence 0 000000 0
Q ss_pred cccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCce-------E---
Q 001396 762 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T--- 829 (1086)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~-------~--- 829 (1086)
. .+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 147 ---------------------~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 147 ---------------------P------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp ---------------------S------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred ---------------------C------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 0 00001233467788888888776665 5788888876432 1
Q ss_pred ---EEEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcee--EEEe---ccccCCeEEEEEeCCCCEEEEEeC
Q 001396 830 ---ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGG 900 (1086)
Q Consensus 830 ---~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~v~~l~~spdg~~l~s~s~ 900 (1086)
......+......++|+| +++++++++ .++.|.+|++.+++. +..+ ..+...+..++|+|||++|+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 122233456678999999 888877776 689999999997754 2323 334456789999999999877665
Q ss_pred C--CcEEEEECC--CCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeEEEEEc--CCccceeccccCCc
Q 001396 901 D--AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISS 972 (1086)
Q Consensus 901 d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~h~ 972 (1086)
+ +.|.+|+++ ++.......+.. + ..+..++|+|||++|+++ .++.+.+|++ .+++........+.
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~ 351 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKV 351 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEEC
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeC
Confidence 4 899999996 334322222222 1 247799999999999885 4678999654 46665543223345
Q ss_pred cCEEEEEEe
Q 001396 973 VPISQATFS 981 (1086)
Q Consensus 973 ~~v~~l~fs 981 (1086)
..+.++.|.
T Consensus 352 ~~p~~v~~~ 360 (361)
T 3scy_A 352 DKPVCLKFV 360 (361)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEc
Confidence 678888886
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-18 Score=187.87 Aligned_cols=300 Identities=13% Similarity=0.130 Sum_probs=197.9
Q ss_pred ecCCCceEEEEEec----cCcEEEEec--CCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 336 FHPVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 336 ~spdg~~lla~gs~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
..+... .+.+|+. ++.|.+|++ .+|+..... .. +...+..++|+|||++|++++
T Consensus 9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN 68 (361)
T ss_dssp GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence 344444 4666654 467888876 455543220 11 557788899999999999998
Q ss_pred CC----CEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe------ec-
Q 001396 410 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG- 477 (1086)
Q Consensus 410 ~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~------~~- 477 (1086)
.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ .+
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 75 79999999863 223333334445566778888 7773 3444446889999999754433211 11
Q ss_pred -------CCcceEEEeecccCCccEEEEEE-cCCeEEEEEcCCCce-------------eEEecCCCCceEEEEEecCCC
Q 001396 478 -------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-------------RVDYDAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 478 -------h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~~~~s~d~~ 536 (1086)
+...+.+++|+ ++|+++++++ .++.|++|+++.... .............++|+|||+
T Consensus 146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 12234778885 4777665554 589999999886542 122233445678999999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECC--CcEEEEEcC--CCe--eEE
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLT 608 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--g~i~iwd~~--~~~--~~~ 608 (1086)
+++++.. .++.|.+||+.+++. +..+.....+......++|+|||++|+++..+ +.|.+|++. +++ .+.
T Consensus 224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~ 300 (361)
T 3scy_A 224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG 300 (361)
T ss_dssp EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence 8887763 266799999987754 33333333223456899999999999777654 899999996 454 344
Q ss_pred EEcCCCCCCCCceEEEecCCCEEEEEE-CCCcEEEEECC--CCCeeeec-cccccceeeeEE
Q 001396 609 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV 666 (1086)
Q Consensus 609 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~ 666 (1086)
.+.. + ..+..++|+|+|++|++++ .++.|.+|++. +++..... ..+...+.|+.|
T Consensus 301 ~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 301 YQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 4443 2 3468999999999998888 57899996554 55544333 223345556555
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-18 Score=187.36 Aligned_cols=251 Identities=11% Similarity=0.132 Sum_probs=172.9
Q ss_pred CCccEEEEEECCCCCEEEEEeC---CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCCcEEEE
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVW 464 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~~i~iw 464 (1086)
+...+..++|+|||+ |++++. ++.|++|++.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 446678899999999 555544 68999999987653 33334456778899999999999 566666 78999999
Q ss_pred eCC-CCc--eeEEeec---------CCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCceeE--EecC-CCCceEE
Q 001396 465 DAV-TGS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARV--DYDA-PGLGCTR 528 (1086)
Q Consensus 465 d~~-~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~--~~~~-~~~~i~~ 528 (1086)
|+. +|. .+..+.. +...+.+++|++ +++++++...++.|++|++. .+.... .... .......
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 986 333 2333321 122477888855 66667777778999999998 333222 2222 3346788
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCC--Ceee--eEEecccc---cCCceEEEEEecCCCEEEE-EECCCcEEEEE
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 600 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd 600 (1086)
++|+|||++++++.. .++.|.+|++.. ++.. ..+..... ....+..++|+|+|++|++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 256788998774 5432 22222220 0135888999999998855 56789999999
Q ss_pred cCC---CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-CcEEEEEC--CCCCe
Q 001396 601 MNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILET--PESNS 650 (1086)
Q Consensus 601 ~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~--~~~~~ 650 (1086)
+.. .+.+..+..++ ..+..++|+|||++|+++..+ +.|.+|++ .+++.
T Consensus 269 ~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 973 24455555432 246899999999999888765 89999955 44543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=212.66 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=176.4
Q ss_pred CccEEEEEECCCCCEEEEEeC-CCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeC---CCcEEEE
Q 001396 390 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 464 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~---d~~i~iw 464 (1086)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+..++|+|| + ++++++. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 467999999999999999887 999999999776543 244555 68999999999 5 6776664 4555665
Q ss_pred eCCC---CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 465 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 465 d~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
.+.. +... .+..+. .+...+|++++++..+++++.++. .+||+.+++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 4432 3322 443222 344567777766555665555555 499998877655443333 789999999999988
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC--cEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||++|+++..++ .|++||+.+++.. .+..+ ...+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence 765444478999999988765 555555 7789999999999999888888 8999999998877 54433 2335
Q ss_pred ceEE--------EecCCCEEEEEECCCcEEEEEC
Q 001396 620 PRIC--------FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 620 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999999999999999999998
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=191.66 Aligned_cols=283 Identities=11% Similarity=0.062 Sum_probs=194.8
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE-EeC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYS 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~ 410 (1086)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888886 689999999999999999987654211 12125778999999997654 456
Q ss_pred CCEEEEEEecCCCccccceEec-cc-----cccEeEEEecCCCCcEEEEEEeCC------------CcEEEEeCCCCce-
Q 001396 411 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR- 471 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~v~~s~d~~~l~l~s~~~d------------~~i~iwd~~~~~~- 471 (1086)
++.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999998875542 22 22 23478999999999 56666644 8999999998543
Q ss_pred --eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCC------------------------c
Q 001396 472 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 525 (1086)
Q Consensus 472 --~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------------------~ 525 (1086)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 334577888854 666 55544 4499999998887665543320 2
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE-EecccccCCceEEEEEec-CCCEEEEEECCCcEEEEEcCC
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
...+++++++........ ....+..+|..+++.... +... ...+..++|+| ++++++++ ++.|++||+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence 344666665532211110 011233366665543211 1112 35788999999 99999888 88999999999
Q ss_pred CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc
Q 001396 604 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 604 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
++.+..+.... .+.+++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus 285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99888876543 36789999999999888889999999999887766554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-19 Score=199.26 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE-
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 406 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 406 (1086)
...++.+++++++. ++++|+.++ ++||+...-..... . ..+.. ....+.......|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK-P--GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC-T--TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc-c--ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 588888877 89988642111000 0 00000 000001111224677899999999999999
Q ss_pred ---EEeCCCEEEEEEecCC--------CccccceEeccccccEeEEEecCC-CCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 407 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 407 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~v~~s~d-~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222223456689999999999998 56 899999999999999999987777
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC-------CCceEEEEEecCCCEEEEEeeCC--
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK-- 545 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~~-- 545 (1086)
..+|...|.+++|++ +|.+|++|+.||+|++||.+ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999965 67899999999999999998 4444444333 22789999999998887655322
Q ss_pred -CCceeEEEEeCCCC
Q 001396 546 -EGESFLVEWNESEG 559 (1086)
Q Consensus 546 -~~~~~i~iwd~~~~ 559 (1086)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11235899998764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-18 Score=206.16 Aligned_cols=380 Identities=12% Similarity=0.031 Sum_probs=242.0
Q ss_pred eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce--EEEEEecCCCEEEEEECC---------C
Q 001396 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 594 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g 594 (1086)
..+++|+|||++++++ ++.|++||+.+++....+.++......+ ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988885 4579999999999888888776222223 448899999999998875 5
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc-ccccceeeeEEccCCCce
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 673 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~ 673 (1086)
.+.+||+.+++... +..+ ...+..++|||||+.||.+. ++.|++|+..++....... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999998654 3222 23578999999999999885 5899999998765432111 00000
Q ss_pred eccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-cee
Q 001396 674 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 752 (1086)
Q Consensus 674 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 752 (1086)
+..+.. -.+|.-+ -......+.|||||+.|+.++.| +.+
T Consensus 156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 000000 0000000 01223467899999999988765 447
Q ss_pred EEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccC---ce-
Q 001396 753 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 828 (1086)
Q Consensus 753 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~---~~- 828 (1086)
.+|++..... +. .+...+..+.+.+.|..- ....|.+||+.+ ++
T Consensus 196 ~~~~~~~~~~-------------------~~----------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-------------------ES----------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-------------------TT----------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-------------------CC----------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 7776532110 00 133445667777766421 123689999998 73
Q ss_pred -EEEEEc------CCCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCce----eE--EEe--ccccCCeE-----
Q 001396 829 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 884 (1086)
Q Consensus 829 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~v~----- 884 (1086)
....+. ++...+..++|+| |+++++.... +..|++||+.+++ +. ..+ .+|.+.|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 223343 3677899999999 7887665533 3479999999887 22 222 45665554
Q ss_pred EEEEeCCCCEEE-EEeC-C--CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeC-----C--e
Q 001396 885 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 952 (1086)
Q Consensus 885 ~l~~spdg~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~--~ 952 (1086)
.++|||||+.|+ ..+. + ..|++||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 6654 3 46888898875522 2223322 244443 355777766 432 2 4
Q ss_pred EEEEEcCCccceeccc---cCCccCEEEEEEeCCCCEEEEEECC---CcEEEEEcCCCceeeeec
Q 001396 953 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~s~~~D---g~v~vWd~~~~~~~~~~~ 1011 (1086)
|+..++..+.....+. .+....+..+.|||||++++..... ..+.+++..+++.+..+.
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 5555655544321222 1234678899999999987755543 368888988887654443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=202.56 Aligned_cols=270 Identities=12% Similarity=0.113 Sum_probs=185.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCce----------EEEE-----EcCCCCCeEEEEEcCCCCCEEE----EE
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 856 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 856 (1086)
...+..+++++++.++++++...+++|+..... .+.. ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 445789999999999999986559998764210 1111 112556799999999 889999 78
Q ss_pred eCCCeEEEEEcCCc--------e---eEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeeccC
Q 001396 857 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924 (1086)
Q Consensus 857 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 924 (1086)
+.|+.|++||+.++ + .+..+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++.. +....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 88999999999765 2 24667789999999999998 89999999999999999998632 11222
Q ss_pred CCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccc------cCCccCEEEEEEeCCCCEEEE-EECCCc-
Q 001396 925 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------PISSVPISQATFSCDCRMVFT-SFVDGT- 995 (1086)
Q Consensus 925 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~s-~~~Dg~- 995 (1086)
+|.. .|.+++|+|+|++|++ +.|+.|++||.+ ++....+. ..|...|.+++|++++.++++ ++.||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 3333 6999999999999999 578999999998 44433221 123458999999999988764 334433
Q ss_pred -----EEEEEcCCCcee-----eeeccccccCCCCccCcccceEEEECCCCCCEEEEEe-CCCcEEEEccCCCCCCCCCC
Q 001396 996 -----LSIHEASNLEVQ-----CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEPNEPGDTWAVL 1064 (1086)
Q Consensus 996 -----v~vWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~ 1064 (1086)
+++|++...... ..+....+-. + ........+.+.+ +.+++++++ ..+.|.++.....+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~-~--~~r~~~~~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGS-C--TERQHHYYLSYIE-EWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCC-C--SSSCCCEEEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCC-C--CCcCcceeeehhc-cCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 899999865321 1111111100 0 1111122344446 455555554 45668999887766678766
Q ss_pred CcccccCCCCCCCCc
Q 001396 1065 PPDEIVGDQPTSTSE 1079 (1086)
Q Consensus 1065 ~p~~~~~~~~~~~~~ 1079 (1086)
...|..+++-+.+.+
T Consensus 342 ~~~d~~ra~lP~~~~ 356 (434)
T 2oit_A 342 LLEDSSRAELPVTDK 356 (434)
T ss_dssp EECGGGCCBCCBCTT
T ss_pred eccccccccccCCCC
Confidence 666666665555544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=186.18 Aligned_cols=307 Identities=10% Similarity=0.002 Sum_probs=198.2
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
..++.++++++.++.|++||..+++....+..+. ..+..++|+|+|+++++... .++.|++||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4467789999999999999999988776665443 25778999999997766542 2668999999999888777643
Q ss_pred ccc---CCceEEEEEecCCCEEEEEECC------------CcEEEEEcCCCee---EEEEcCCCCCCCCceEEEecCCCE
Q 001396 569 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 569 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
... ...+..++|+|+++++++++.+ +.|.+||+.+++. +.....+. .+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-
Confidence 200 1237889999999999998865 8999999988543 34443332 478899999999
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
+++++ +.|.+||..+++....+....... + . ......+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~----------------------------~----~--~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNR----------------------------K----G--YSAPDVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCC----------------------------T----T--BCCCBCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCC----------------------------c----c--ccCccceeeecCC
Confidence 55554 449999999887665443211000 0 0 0000112233211
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccce-eEEeeccCCccccCcccccccCCceecCCCCCceeeec
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV-HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 789 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 789 (1086)
.... .......+++++++........... +..++.... .+..++.
T Consensus 205 ~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~---------- 250 (349)
T 1jmx_B 205 SPRH------------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG------------KTHTQEF---------- 250 (349)
T ss_dssp CTTC------------EEEEEEEEEEC-------CCCEEEEEEEEEETTTC------------CEEEEEE----------
T ss_pred Ccce------------eEEeeeeeeecCCCcCCccccccceeEEEEeccCC------------cEEeccc----------
Confidence 0000 0012334556655432211111111 111221111 1111111
Q ss_pred CCCCCCCCCeeEEEeec-CCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001396 790 TTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 868 (1086)
Q Consensus 790 ~~~~~~~~~v~~l~~s~-dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~ 868 (1086)
. .+...+..++++| |+++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|.+||+.
T Consensus 251 -~--~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 251 -A--DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp -E--ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred -c--cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEEecc
Confidence 0 1345678999999 99999988 89999999999998888763 34567999999 78777778889999999999
Q ss_pred CceeEEEeccc
Q 001396 869 SSEVISKLEGH 879 (1086)
Q Consensus 869 ~~~~~~~l~~h 879 (1086)
+++.+..+...
T Consensus 325 ~~~~~~~~~~~ 335 (349)
T 1jmx_B 325 TLEKVKNIKLP 335 (349)
T ss_dssp TTEEEEEEECS
T ss_pred ccceeeeeecC
Confidence 99988877644
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-18 Score=190.99 Aligned_cols=294 Identities=11% Similarity=0.020 Sum_probs=199.6
Q ss_pred ecCCCccEEE-----EEECCCCCEEEEEeC-CC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC
Q 001396 386 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457 (1086)
Q Consensus 386 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~ 457 (1086)
+..|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 6667666666 899999999999987 66 48888998886543 2345555666789999999 7888888
Q ss_pred CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE----------------------cCCeEEEEEcCCCce
Q 001396 458 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 515 (1086)
Q Consensus 458 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------------------~dg~i~vwd~~~~~~ 515 (1086)
++.|++||+.+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999999877777777666656555567887777432 346799999988765
Q ss_pred eEEecCCCCceEEEEEec-CCCEEEEEeeCCC--CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC
Q 001396 516 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 516 ~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
.... .+...+..++|+| ||+.|+.+..... ....|+++|..++.......... ...+....|+|||+.|+..+.
T Consensus 181 ~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 4433 3455688999999 9999988775321 14478899987665433322211 125778899999998866442
Q ss_pred -CC----cEEEEEcCCCeeEEEEcCCCC--C-CCCceEEEecCCCEEEEE---------ECCCcEEEEECCCCCeeeecc
Q 001396 593 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 593 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
++ .|++||+.+++.......... . .....++|+|||+.|+.. ..+..|.+||+.+++. ..+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 336 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA 336 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence 22 399999999875433222210 0 012335799999988864 4466899999988654 3333
Q ss_pred cccc-----------ceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecc-ccCccceeeee
Q 001396 656 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEKPL 710 (1086)
Q Consensus 656 ~~~~-----------~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~-~d~~i~vw~~~ 710 (1086)
.+.. .+..++| +|||+.++..+ .++...+|.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~----------------------spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSF----------------------TPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEE----------------------CTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCcccccccccccCCCCccC----------------------CCCCCEEEEEecCCCceeEEEEE
Confidence 3322 2333333 57887776544 56777788765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-17 Score=184.91 Aligned_cols=249 Identities=9% Similarity=0.086 Sum_probs=169.7
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEEcc-CceEEEEEcC-CCCCeEEEEEcCCCCC--EEEEEe-------------CC
Q 001396 797 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------DD 859 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~lasg~-------------~d 859 (1086)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46778999999999988885699999997 7776543321 112356689999 788 455553 68
Q ss_pred CeEEEEEcC-CceeEEEec----cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECC-CCceeeeeeeeccCCCccCCCC
Q 001396 860 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 932 (1086)
Q Consensus 860 g~v~iwd~~-~~~~~~~l~----~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 932 (1086)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466554443 24567999999999998887664 6789999998 66543222222111 01 24
Q ss_pred ceEEEEecCCCEEEEEe--CCeEEEEEcC--Cccce------ecccc---CCcc------CEEEEE-EeCCCCEEEEEEC
Q 001396 933 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCL------KQWFP---ISSV------PISQAT-FSCDCRMVFTSFV 992 (1086)
Q Consensus 933 v~~~~~s~dg~~l~~~~--d~~i~vwd~~--~~~~~------~~~~~---~h~~------~v~~l~-fs~dg~~l~s~~~ 992 (1086)
+..++|+|||++|+++. ++.+.+|++. +++.. ..+.. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998753 5789999875 45532 11111 2222 588999 9999999887764
Q ss_pred CC------cEEEEEcC-CCceeeeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCC-CcEEEEccCCC
Q 001396 993 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1057 (1086)
Q Consensus 993 Dg------~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~d-g~v~vw~~~~~ 1057 (1086)
+. +|.+|+++ +|++........... ..+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 566543211000000 12335678884 57889888865 89999998643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-17 Score=178.57 Aligned_cols=297 Identities=10% Similarity=0.108 Sum_probs=202.6
Q ss_pred CCCceEEEEE-----eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC--
Q 001396 338 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 410 (1086)
Q Consensus 338 pdg~~lla~g-----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 410 (1086)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 3666644443 2378999999999987654 3334444 8999999999999862
Q ss_pred --------CCEEEEEEecCCCccccceEecc---ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEE-ee
Q 001396 411 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 476 (1086)
Q Consensus 411 --------d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~~~~-~~ 476 (1086)
++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.. +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 56899999998876654322111 234567899999999 455544 368999999999988877 54
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-------EecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
.. +. ..+.+.+.. ...+++.+.||.+.+|++....... .+.....+ ..+.+++++..++..+. ++
T Consensus 150 ~~-~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AA-GC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GT-TE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CC-Cc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 32 21 223344432 3678889999999999986533222 11222222 23345678877776654 45
Q ss_pred eEEEEeCCCCee--eeEEeccc---c----cCCceEEEEEecCCCEEEEEEC-----------CCcEEEEEcCCCeeEEE
Q 001396 550 FLVEWNESEGAI--KRTYQGLQ---L----QHNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 550 ~i~iwd~~~~~~--~~~~~~~~---~----~~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~ 609 (1086)
.++++|+..+.. ...+.... . .......++|+|++++++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 799999875532 22221100 0 0011223789999998887643 34799999999999999
Q ss_pred EcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC--CeeeeccccccceeeeEEccCC
Q 001396 610 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 670 (1086)
Q Consensus 610 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~p~~ 670 (1086)
+..+. +..++|+|||++|+++.. +.|.+||..++ +.+..+......-..+++.|++
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98664 689999999999998887 99999999999 8887765555556667776543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-17 Score=179.99 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=173.7
Q ss_pred CCccEEEEEECCCCCEEEEEeCCCEEEEEEec-CCCccccceEeccccccEeEEEecCCCCcEEEEEEe-----------
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 456 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~----------- 456 (1086)
....+..++|+|||++|++++.+ .|.+|++. +++.... .....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999999888 89999997 7654321 111111 236679999999853455553
Q ss_pred --CCCcEEEEeCC-CCceeEEee----cCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcC-CCceeE--Eec--CCC
Q 001396 457 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 523 (1086)
Q Consensus 457 --~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~--~~~--~~~ 523 (1086)
.++++.+|++. +|+....+. .+...+.+++|+ +||++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 576654443 245678889885 4777777765 46899999998 555432 233 235
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC--CCeeee---EEecccc----cCC------ceEEEE-EecCCCEE
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 587 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l 587 (1086)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988753 24578888654 565432 2222110 011 478999 99999998
Q ss_pred EEEECC-C-----cEEEEEcC-CCeeEEE---EcCCCCCCCCceEEEec---CCCEEEEEECC-CcEEEEECCCC
Q 001396 588 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 648 (1086)
Q Consensus 588 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 648 (1086)
+++..+ + .|.+|++. +++.... .... ......++|+| ||++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876532 2 89999996 6665432 2222 12357899999 89999999864 89999998765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=187.01 Aligned_cols=295 Identities=10% Similarity=-0.014 Sum_probs=192.6
Q ss_pred cceeeeeccCCCC-----ceEeeecCCCceEEEEEeccC--cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC
Q 001396 318 KTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390 (1086)
Q Consensus 318 ~~~~~~l~~h~~~-----V~~~~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 390 (1086)
...++.|..+... +..++|||||++++++...++ .|.+||+.+++... +..+.
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~~ 79 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEGK 79 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCSS
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecCC
Confidence 3444555554333 889999999997555554433 68888998887543 22232
Q ss_pred cc-EEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeE-------------------EEecCCCCcE
Q 001396 391 VS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQI 450 (1086)
Q Consensus 391 ~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------v~~s~d~~~l 450 (1086)
.. ...++|||||++|++++.++.|++||+.+++... ....+...... ++|+|+++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~- 155 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW- 155 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc-
Confidence 33 3347899999999999999999999999876432 12223332222 356788874
Q ss_pred EEEEE-----eCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEe
Q 001396 451 SVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 451 ~l~s~-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~ 519 (1086)
++.. ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+.........
T Consensus 156 -~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 156 -EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp -HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred -eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3332 45678999999998865544 46677888888552 45566665543 36888888765543333
Q ss_pred cCC-CCceEEEEEecCCCEEEEEeeCC-CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEec-CCCEEEEEE-----
Q 001396 520 DAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----- 591 (1086)
Q Consensus 520 ~~~-~~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----- 591 (1086)
... ...+..++|+|||++|+..+... ...+.|++||+.+++....... . ... +.|+| +++++++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC--
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcce
Confidence 321 23578899999999888775432 1225599999998876543322 1 123 88999 999888754
Q ss_pred -----------CCCcEEEEEcCCCeeEEEEcCCCCC--------CCCceEEEecCCCEEEEEEC-CCcEEEEEC
Q 001396 592 -----------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKILET 645 (1086)
Q Consensus 592 -----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 645 (1086)
.++.|++||+.+++........... ..+..++|+|+|+.|+..+. ++...+|.+
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999999888754333222110 02466899999998887775 455555543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-16 Score=173.62 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=211.1
Q ss_pred CccEEEEEE------cCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee------CCCCceeEEEEeCCCC
Q 001396 492 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 559 (1086)
Q Consensus 492 ~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~ 559 (1086)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455665553 4789999999988877776665444 8999999999998863 1223567999999999
Q ss_pred eeeeEEecccc---cCCceEEEEEecCCCEEEEEEC--CCcEEEEEcCCCeeEEE-EcCCCCCCCCceEEEecCC-CEEE
Q 001396 560 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 632 (1086)
Q Consensus 560 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 632 (1086)
+.+..+..... +......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 98888764320 1135677899999999999864 68999999999998887 65432 2335677765 6788
Q ss_pred EEECCCcEEEEECCC-CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeee
Q 001396 633 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 711 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~ 711 (1086)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111100
Q ss_pred cCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCC
Q 001396 712 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791 (1086)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 791 (1086)
.. ..+.+++++..++..+.++.+.++++....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011124455555555666777777764322100 001111100000 000
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEe------------CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001396 792 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 859 (1086)
Q Consensus 792 ~~~~~~~v~~l~~s~dg~~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 859 (1086)
-.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0011122378999988877653 2379999999999999998776 99999999 8889998886
Q ss_pred CeEEEEEcCCc--eeEEEeccccCCeEEEEEeCCCC
Q 001396 860 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 893 (1086)
Q Consensus 860 g~v~iwd~~~~--~~~~~l~~h~~~v~~l~~spdg~ 893 (1086)
+.|.+||..++ +.+.++..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877778889999999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-14 Score=165.29 Aligned_cols=321 Identities=13% Similarity=0.152 Sum_probs=215.3
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcC--CCeeEEEEcCCCCCCCCceEEEe
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
++.|.++|..+++.+..+... ..+..+.|+|||+++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 678999999999999888753 357789999999999999999999999996 8888887765432 4789999
Q ss_pred ----cCCCEEEEEEC-CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccc
Q 001396 626 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 700 (1086)
Q Consensus 626 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 700 (1086)
|||++++++.. ++++.++|..+.+.+..+......+
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~--------------------------------------- 289 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY--------------------------------------- 289 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT---------------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc---------------------------------------
Confidence 69998888765 5899999988765554332100000
Q ss_pred cCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCC
Q 001396 701 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 780 (1086)
Q Consensus 701 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1086)
++.
T Consensus 290 --------------------------------------~~~--------------------------------------- 292 (567)
T 1qks_A 290 --------------------------------------DEQ--------------------------------------- 292 (567)
T ss_dssp --------------------------------------TTC---------------------------------------
T ss_pred --------------------------------------ccc---------------------------------------
Confidence 000
Q ss_pred CCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEE--EEEcCCCCCeEEEEEcCCCCCEEEEE
Q 001396 781 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIG 856 (1086)
Q Consensus 781 ~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg 856 (1086)
. . .....+..+.+++++..+++.. .|.|.++|..+.+.+ ..+ ........+.|+| ++++++++
T Consensus 293 --~-~--------~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va 359 (567)
T 1qks_A 293 --E-Y--------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITA 359 (567)
T ss_dssp --C-E--------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEE
T ss_pred --c-c--------cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEE
Confidence 0 0 0011334455555544443332 366777776654322 222 2334567889999 78877665
Q ss_pred e-CCCeEEEEEcCCceeEEEecc-----ccCCeEEEEEeCCCCE-EEEEe-CCCcEEEEECCCCc-----eeeeeeeecc
Q 001396 857 M-DDSTILIYNARSSEVISKLEG-----HSKRVTGLVFSDALNI-LVSSG-GDAQIFVWDVDGWG-----IQTCRSLQTP 923 (1086)
Q Consensus 857 ~-~dg~v~iwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~-l~s~s-~dg~i~iwd~~~~~-----~~~~~~~~~~ 923 (1086)
. .++.|.++|+.+++++..+.- |.+.-.. .++|++.. +++.. .++.|.++|..+.. .+....+...
T Consensus 360 ~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 360 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence 5 578999999999988776653 4332222 26887544 44543 46899999998732 1112233322
Q ss_pred CCCccCCCCceEEEEecCCCEEEEEe--------CCeEEEEEcCCc-----cce-eccc-------cCCccCEEEEEEeC
Q 001396 924 DGVMTLAPSETHIQFHKDQTRFLLVH--------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSC 982 (1086)
Q Consensus 924 ~~~~~~~~~v~~~~~s~dg~~l~~~~--------d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~ 982 (1086)
.+ .-..+.++|++++|.+.. .+.|.|+|+.+. ... ..+. ..-..++..+.|++
T Consensus 439 g~------g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 439 GG------GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp CS------CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred CC------CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 11 224578999999998853 358999999877 211 1111 11246889999999
Q ss_pred CCCEEEEEE-----CCCcEEEEEcCCCceeeeec
Q 001396 983 DCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 983 dg~~l~s~~-----~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
||+.+..+. .++.|.|+|..+++++.++.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 999877663 37899999999999998886
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-16 Score=187.96 Aligned_cols=293 Identities=10% Similarity=0.002 Sum_probs=194.6
Q ss_pred eeccCCCCceEeeecCCCceEEEEE--eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEE------
Q 001396 323 TLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN------ 394 (1086)
Q Consensus 323 ~l~~h~~~V~~~~~spdg~~lla~g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------ 394 (1086)
.+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~ 77 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEY 77 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGT
T ss_pred HHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCcccccccccc
Confidence 4678999999999999875 35555 4578899999654443332 445555555
Q ss_pred ---EEEEC--CCCCE-EEEEeC-CCEEEEEEec--C-CCccccceEecc-----ccccEeEEEecCCCCcEEEEEEeCC-
Q 001396 395 ---RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD- 458 (1086)
Q Consensus 395 ---~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~v~~s~d~~~l~l~s~~~d- 458 (1086)
..+|+ |||++ ||.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~ 151 (662)
T 3azo_A 78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEF 151 (662)
T ss_dssp CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEE
T ss_pred CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecc
Confidence 55565 99999 887754 4566666665 3 43 22 2444 677899999999999 67766665
Q ss_pred ---------CcEEEEeCCC------CceeEEee-cCCcceEEEeecccCCccEEEEEEcCC--------eEEEEEcC-CC
Q 001396 459 ---------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-SL 513 (1086)
Q Consensus 459 ---------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg--------~i~vwd~~-~~ 513 (1086)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.++ .|++||+. ++
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 5899999988 44 45555 56667777777 55888998887653 79999998 45
Q ss_pred ---ceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC-----ceEEEEEecCCC
Q 001396 514 ---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAKD 585 (1086)
Q Consensus 514 ---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~ 585 (1086)
........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++.
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 229 RFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp CEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred cccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 333344444678899999999995555433 3345789999877776544443221000 156788999999
Q ss_pred EEEEEECCCcEEEE--EcCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCC--cEEEEECCCCCee
Q 001396 586 QILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 651 (1086)
Q Consensus 586 ~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~ 651 (1086)
.+++++. +.+++| |+.+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.++++.+++..
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 9999988 999999 555565 55555442 234444 1444443 33444454 4555566666543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-14 Score=162.34 Aligned_cols=246 Identities=11% Similarity=0.008 Sum_probs=160.0
Q ss_pred CCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEE
Q 001396 338 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 417 (1086)
Q Consensus 338 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 417 (1086)
|.+ +++++...+++|.++|..+++.+.... ....+..++|||||+++++++.++.|.+|
T Consensus 165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~~i~--------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 165 LEN-LFSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp GGG-EEEEEETTTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCc-eEEEEeCCCCeEEEEECCCCeEEEEEe--------------------CCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence 444 467888889999999999998876421 22456799999999999999999999999
Q ss_pred Eec--CCCccccceEeccccccEeEEEec----CCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC
Q 001396 418 AYH--GGSDARQQLEIDAHVGNVNDLAFS----APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 418 d~~--~~~~~~~~~~~~~h~~~v~~v~~s----~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
|+. +++.+. .+.... ....++|+ |||++ ++++...+++|.|+|..+.+.+..+......+....+++
T Consensus 224 D~~~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p-- 296 (567)
T 1qks_A 224 DLWMKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP-- 296 (567)
T ss_dssp ETTSSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES--
T ss_pred ECCCCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC--
Confidence 996 665444 333322 35789999 69995 455556679999999999988877652211000000000
Q ss_pred CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 571 (1086)
...+..+..++++..++.... ..+.|.++|..+.+.........
T Consensus 297 -------------------------------~~rva~i~~s~~~~~~vv~~~---~~g~v~~vd~~~~~~~~v~~i~~-- 340 (567)
T 1qks_A 297 -------------------------------EPRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA-- 340 (567)
T ss_dssp -------------------------------CCCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--
T ss_pred -------------------------------CCceEEEEEcCCCCEEEEEec---CCCeEEEEecCCCccceeeeeec--
Confidence 112334555555554443321 25567777766543222111111
Q ss_pred CCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcC-CCCCCCCceEE-EecCCCEEEEEE--CCCcEEEEECC
Q 001396 572 HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC-FNKNGTLLAVIA--NENRIKILETP 646 (1086)
Q Consensus 572 ~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~-~s~~~~~l~~~~--~dg~i~iw~~~ 646 (1086)
......+.|+|++++++++. .++.|.++|+.+++.+..+.. ......-.... ++|++..+.+.+ .++.|.+++..
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 14567889999999988765 678999999999998888765 22111112333 578755554433 35789998877
Q ss_pred C
Q 001396 647 E 647 (1086)
Q Consensus 647 ~ 647 (1086)
+
T Consensus 421 ~ 421 (567)
T 1qks_A 421 P 421 (567)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-15 Score=166.97 Aligned_cols=262 Identities=9% Similarity=0.103 Sum_probs=177.8
Q ss_pred CceEeeecCCCceEEEEE--------eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 330 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
.+...++ ||++++.+. ..++.|.+||+.+++... + ..+..++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5667777 898755442 225779999998876432 2 46788999999
Q ss_pred CCEEEEEeCC---C--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-------------------
Q 001396 402 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 457 (1086)
Q Consensus 402 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------------------- 457 (1086)
|++||+++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988653 3 47888888775433 223334 999999999994 554442
Q ss_pred --------CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC-------eEEEEEcCCCceeEEecCC
Q 001396 458 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 522 (1086)
Q Consensus 458 --------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~~ 522 (1086)
...|.+||+.+++.+..+.. . .+..++|+ +|| +++++..++ ...+|.+++++ ...+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC
Confidence 25799999999887555554 3 67778885 477 777776542 44555555333 3333223
Q ss_pred CCceEEEEEecCCCEEEEEeeCCC----CceeEEEEeCCCCeeeeEEecccccCCceEE-EEEecCCCEEEEEECCCcEE
Q 001396 523 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 523 ~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~ 597 (1086)
..+..+ +|||+.|+..+.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 444443 999999988764321 245789999 565544444433 66775 8999 88 888899999999
Q ss_pred EEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcE-EEEECC
Q 001396 598 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 646 (1086)
Q Consensus 598 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 646 (1086)
+| +.+++....... ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 886665444432 23578899999 677777777665 777765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=175.57 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=166.3
Q ss_pred EEEEEECCCCCEEEEEeCC---CEEEEEEecCCCccccceEeccccccE-eEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 393 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
+.+++|||||++||.+... ..|.+||+.+++... +..+...+ ..+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 6788999999999887543 478899998876432 33333333 3488999999 788888888999999999
Q ss_pred CceeEEeecCCcceEE---Eee--------------cccCCccEEEEE-----EcCCeEEEEEcCCCceeEEecCCCCce
Q 001396 469 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 526 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~---~~~--------------~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~i 526 (1086)
++.......+...... +++ ..++++..++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876666545443222 111 123344444433 35668999999887665444 345578
Q ss_pred EEEEEec-CCCEEEEEeeCCCC--ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEE
Q 001396 527 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 598 (1086)
Q Consensus 527 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~i 598 (1086)
..+.|+| +++.|+..+..... ...|++||+.+++......... ...+..+.|+|+|++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642110 1579999987765433322111 1357889999999988876543 44999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEE----------------CCCcEEEEECCCCCe
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 650 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~ 650 (1086)
||+.+++......... .. ++|+| +|+++++++ .++.|.+||+.++..
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887654433221 23 89999 999888765 347899999987653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-15 Score=160.92 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=184.9
Q ss_pred CCceEeeecCCCceEEEEEecc------------------------CcEEEEecCCCceeeeeeeeeeeccccceeeeee
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 384 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1086)
+.|.+++++|+|+ ++++.+.+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4799999999998 67777766 47999999888865420
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC-ccccceEe---------ccccccEeEEEecC-CCCcEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 453 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~v~~s~-d~~~l~l~ 453 (1086)
-.++-..+..++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12455678999999999988888889999999986542 222 23 24455789999999 677 677
Q ss_pred EEe-CCCcEEEEeCCCCceeEEeecCC----------cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec--
Q 001396 454 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 520 (1086)
Q Consensus 454 s~~-~d~~i~iwd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-- 520 (1086)
+.+ .++.|++|| .+|+.+..+.... .....+++.++ .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 7788877774322 33788888542 26788888889999999998777776663
Q ss_pred CCCCceEEEEEecCCCEEEEEee---CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGT---SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.....+..++|+| +..+...+. .......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 444443321 112245799999999999888753222336789999999997777778899999
Q ss_pred EEEcCC
Q 001396 598 IWDMNK 603 (1086)
Q Consensus 598 iwd~~~ 603 (1086)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-15 Score=160.76 Aligned_cols=245 Identities=12% Similarity=0.086 Sum_probs=182.2
Q ss_pred CCCeeEEEeecCCCEEEEEeCC-------------------------eEEEEEccCceEEEEEc-CCCCCeEEEEEcCCC
Q 001396 796 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 849 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 849 (1086)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+-.....+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887643 69999999999887765 3446789999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCce-eEEEe---------ccccCCeEEEEEeC-CCCEEEEEe-CCCcEEEEECCCCceeee
Q 001396 850 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 917 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~v~~l~~sp-dg~~l~s~s-~dg~i~iwd~~~~~~~~~ 917 (1086)
++++++...++.|++||..... .+..+ .++......++++| ++.++++.+ .++.|++|+.+. ....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence 8899988889999999986542 45555 34556789999999 888888886 689999999544 3221
Q ss_pred eeeecc-C------CCccCCCCceEEEEecC-CCEEEE-EeCCeEEEEEcCCccceeccc-cCCccCEEEEEEeCCCCEE
Q 001396 918 RSLQTP-D------GVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 918 ~~~~~~-~------~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l 987 (1086)
.+... . +.. .....++++|+ |.++++ ..++.|++|+..+|+.+..+. ..+...+..++|+| |..+
T Consensus 180 -~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~ 254 (329)
T 3fvz_A 180 -QWGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLF 254 (329)
T ss_dssp -EECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEE
T ss_pred -EeccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEE
Confidence 11111 0 111 24789999999 555555 367889999999888877653 34567889999999 4333
Q ss_pred EEE-------ECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCC
Q 001396 988 FTS-------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056 (1086)
Q Consensus 988 ~s~-------~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1056 (1086)
++. ..+..|++|++.+++.+..+.... .....+..++++| ++.++++...++.|++|++..
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 333 344589999999999987764211 1223567899999 678888888999999999854
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-14 Score=153.63 Aligned_cols=242 Identities=10% Similarity=0.100 Sum_probs=175.9
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcC------CCCCeEEEEEc-CCCCCEEEEEeC-CCeEEEE
Q 001396 795 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 865 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw 865 (1086)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 455688999999999887765 6899999987 666666642 33578999995 5 7777776643 8899999
Q ss_pred EcCCceeEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 866 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 866 d~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||...... ..+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE---EEeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677776664 3456789999999999888888889999999764221 112111 111 24789999999997
Q ss_pred EEEE-eCCeEEEEEcCCccceeccc-cCCccCEEEEEEeCCCCEEEEEECCC-cEEEEEcCCCceeeeeccccccCCCCc
Q 001396 945 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1021 (1086)
Q Consensus 945 l~~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~~~Dg-~v~vWd~~~~~~~~~~~~~~~~~~~~~ 1021 (1086)
+++. .++.|.+||.. ++.+..+. .++...+..++++++|.++++...++ .|.+|+. .++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 55444432 22346789999999999888887776 9999995 56666665421
Q ss_pred cCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1022 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1022 ~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.....+.+++++| +++++++ +.|++|++|++....
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1122466899999 6776665 789999999986543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=176.89 Aligned_cols=249 Identities=10% Similarity=-0.000 Sum_probs=176.5
Q ss_pred ecCCCccEEEEEECCCCCEEEEE--eCCCEEEEEEecCCCccccceEeccccccEe---------EEEec--CCCCcEEE
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 452 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~v~~s--~d~~~l~l 452 (1086)
+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 66788999999999887777777 558899999975444333 4556666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEeCC--CCceeEEeec-----CCcceEEEeecccCCccEEEEEEcC----------CeEEEEEcCC--
Q 001396 453 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDS-- 512 (1086)
Q Consensus 453 ~s~~-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~-- 512 (1086)
+..+ .+..|.+|++. ++.....+.. |...+..++|+ +||+.|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4433 35677777765 2044556655 66778888885 577899988877 5899999987
Q ss_pred ----CceeEEec-CCCCceEEEEEecCCCEEEEEeeCCC----CceeEEEEeCC-CC---eeeeEEecccccCCceEEEE
Q 001396 513 ----LGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVH 579 (1086)
Q Consensus 513 ----~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~ 579 (1086)
+.. ..+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.
T Consensus 173 ~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~ 248 (662)
T 3azo_A 173 AADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAE 248 (662)
T ss_dssp TTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEE
T ss_pred cccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceE
Confidence 443 4444 45567888999999999998875432 13689999999 57 4444444434 6889999
Q ss_pred EecCCCEEEEEECCC--cEEEEEcCCCeeEEEEcCCCCC------CCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 580 FDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 580 ~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+|||+.+++++.++ .|++||+.+++.......+... ..+..++|+|++++++++.. +.+++|.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777788 5666777677655443322211 11467899999999999988 99999844
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-10 Score=139.97 Aligned_cols=585 Identities=9% Similarity=0.017 Sum_probs=339.5
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|+++.-.++|. |-.|+.+| +..||-.+ . +.|...... . -.-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGN--MWFATYDG-VNKYDGYA---F-----TVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSC--EEEEETTE-EEEECSSC---E-----EEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCC--EEEeecCc-CcccCCCc---e-----EEEeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 3799999999996 34566655 56666322 1 111110000 0 000236799999999987655 5
Q ss_pred eCCCEEEEEEecCCCccccceEeccccc----cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC-Ccc-e
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 482 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~-v 482 (1086)
+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.+..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 5566 899998775422 1221111 288898888887 333 444 55899998776533211111 112 6
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
.++... .++ .|..++.++-|..|+..+.+..... ......|.++...++|.+.+.... .-+..||..+++.
T Consensus 176 ~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred EEEEEC--CCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence 776653 344 4555676656888987765543321 123456888888888876665421 1288999887765
Q ss_pred eeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----CCCCCCceEEEecCCCEEE
Q 001396 562 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 562 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~ 632 (1086)
....... ......|.++...++|.. ..|+.+ -|.+||..++......... -....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4332211 112356999998888764 445555 5899998887654432211 1123577888888886 55
Q ss_pred EEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeec
Q 001396 633 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 712 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~ 712 (1086)
+|+.++-|..|+..+.... .+.. . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 5677677887765433111 0000 0 00
Q ss_pred CCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCC
Q 001396 713 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792 (1086)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 792 (1086)
+.......|.++...++|... .++.++-+..|+...... ..+....+. .. ..
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~--- 402 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RG--- 402 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCE------------EEECCC--------C---
T ss_pred ----------CCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cC---
Confidence 000023468888888888744 455555566665432211 001000000 00 00
Q ss_pred CCCCCCeeEEEeecCCC-EEEEEeCCeEEEEEccCceEEEEEc----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001396 793 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 867 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~ 867 (1086)
-....|.+++..++|. +.+...++.+.+||..+++...... .....|.++...+ ++++.+ |+.+ -+.+||.
T Consensus 403 -l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 403 -IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp -CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred -CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 0245789999999998 5554446789999998876544322 1345789999988 676655 4444 5899998
Q ss_pred CCceeEEEecc------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecc-CCCccCCCCceEEEEec
Q 001396 868 RSSEVISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 868 ~~~~~~~~l~~------h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~ 940 (1086)
.+++....... +...|.++...++|++.+... .| |..|+..++.. . +... .........|.++...+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~ 552 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEAS 552 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEECT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEECC
Confidence 87765332211 235799999999998877554 44 88899877543 1 1100 00001113688999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCccceec-cccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCC
Q 001396 941 DQTRFLLVHETHLAIYEAEELTCLKQ-WFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1018 (1086)
Q Consensus 941 dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~ 1018 (1086)
+|.+.+.+.. .+..||..+++...- ...+ ....|.++...++|.+.+++ . +-+..|+..++... .+....-++.
T Consensus 553 ~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~ 628 (795)
T 4a2l_A 553 NGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQS 628 (795)
T ss_dssp TSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSC
T ss_pred CCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCcc
Confidence 9997776654 788999877654321 0111 14568899999999877755 4 45778898876543 3332222222
Q ss_pred CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1019 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1019 ~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
. .+...++...+ +| .|..|+.+|-+ .++.
T Consensus 629 ~----~f~~~~~~~~~-~G-~l~~g~~~Gl~-~~~p 657 (795)
T 4a2l_A 629 N----QFNTASYCRTS-VG-QMYFGGINGIT-TFRP 657 (795)
T ss_dssp S----CEEEEEEEECT-TS-CEEEEETTEEE-EECG
T ss_pred c----cCccCceeECC-CC-eEEEecCCceE-EEcH
Confidence 1 22224566666 44 46667777754 4443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-14 Score=150.92 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=178.5
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE-CCCCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 403 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~ 403 (1086)
.+|-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+..+++ .+++.
T Consensus 26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~ 90 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD 90 (286)
T ss_dssp TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence 35556899999999997 68888888999999987 554432110 0001245567899999 57887
Q ss_pred EEEEEeC-CCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee--cCC
Q 001396 404 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG 479 (1086)
Q Consensus 404 ~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~ 479 (1086)
++++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. .+.
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 7776643 78999999 4555443 232 3445789999999998 7787778899999994 567666664 344
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--CCceEEEEEecCCCEEEEEeeCCCCce-eEEEEeC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE 556 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~-~i~iwd~ 556 (1086)
..+..+++. +++.++++.+.++.|++||.. ++....+... ...+..++++++|+++++... ++ .|.+||.
T Consensus 164 ~~p~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~ 236 (286)
T 1q7f_A 164 EFPNGVVVN--DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ 236 (286)
T ss_dssp SSEEEEEEC--SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred CCcEEEEEC--CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence 568888885 467777777889999999974 3444445433 256889999999988877653 43 7999995
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 604 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 604 (1086)
+++.+..+..+. ....+..++++|+|+.+++ +.++.|++|++...
T Consensus 237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566667776543 1234789999999976555 67999999998653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-10 Score=144.08 Aligned_cols=535 Identities=8% Similarity=0.029 Sum_probs=320.6
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|.++...++|.. -.|+. +.+..||..+++...- ... .......|.++...++|.+.+..
T Consensus 88 n~I~~i~~d~~g~l--WigT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t 148 (795)
T 4a2l_A 88 DISRIVKTDSQGRV--WIGTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST 148 (795)
T ss_dssp SCEEEEEECTTSCE--EEEES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred cceeEEEECCCCCE--EEEeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence 47999999999973 34455 4589999887653321 000 00000118888888888766544
Q ss_pred eCCCEEEEEEecCCCccccceEeccc-ccc-EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecCCcceEEE
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 485 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 485 (1086)
.+ .+.+||..+++..... .++ ... |.++...+++. +..++.++.+..||..+++..... ..+...|.++
T Consensus 149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 44 4899998765422110 011 123 88888888886 334565556999998777654321 1234567777
Q ss_pred eecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC-------CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 486 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
... .++ .|..++.++-+..||..+.+....... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGT 291 (795)
T ss_dssp EEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTT
T ss_pred EEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCC
Confidence 653 344 455566555588898776554332221 235689999998888666542 1 288999887
Q ss_pred CeeeeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC--C--CCCCCceEEEecCCCE
Q 001396 559 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 630 (1086)
Q Consensus 559 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 630 (1086)
+......... ......|.++...++|. |..|+.++-|..|+..++......... . ....|.++...++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 7654332211 11236799999988875 666777788999988765433221111 0 123477888888776
Q ss_pred EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 631 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
|.+|+.++-|..|+..++......... ...
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~---------------------------------~~~----------------- 399 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQE---------------------------------DES----------------- 399 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCC---------------------------------CCc-----------------
Confidence 555777777888887654321110000 000
Q ss_pred ecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecC
Q 001396 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 790 (1086)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 790 (1086)
. . ......|.++...++|..+.+++.++-+..++...+.. ..+.....
T Consensus 400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~-------- 447 (795)
T 4a2l_A 400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS-------- 447 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence 0 0 00234578888888887455555555566666433211 11110000
Q ss_pred CCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 791 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 791 ~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
......|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-|..
T Consensus 448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 01345789999999998777665 5688999887765433211 236789999998 776666 444 45889
Q ss_pred EEcCCceeEEEec-------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEE
Q 001396 865 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 937 (1086)
Q Consensus 865 wd~~~~~~~~~l~-------~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 937 (1086)
||..+++. .+. .....|.++...++|++.+... .| |..||..++... ......+... ..|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~---~~~~~~gl~~--~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK---RYNTTNGLPN--NVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE---EECGGGTCSC--SCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE---EeCCCCCCch--hheEEEE
Confidence 99887765 222 1345799999999998777554 35 888998775432 2222222222 3588899
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCccceecccc--CC-ccCE--EEEEEeCCCCEEEEEECCCcEEEEEcC
Q 001396 938 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--IS-SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 938 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~--~h-~~~v--~~l~fs~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
..++|.+.+++ ++.|..|+..+++... +.. +- ...+ .++...++|.+++ |+.+|. ..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGINGI-TTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEE-EEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCce-EEEcHH
Confidence 99999877766 5668888987665432 111 11 1222 5677788887666 667774 445543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-14 Score=153.51 Aligned_cols=274 Identities=10% Similarity=0.027 Sum_probs=188.9
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|.+++|+|++.. ++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 36889999999975 6666778899999 2333222 44566778999999999988888
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEee--cCCcce
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 482 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~~--~h~~~v 482 (1086)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||.++++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876432 1224567899999999998 66766655 689999988877654443 244568
Q ss_pred EEEeecccCCccEEEEEEc------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 483 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
..+++.+ ++.++++... .+.|..+|....+.... ......+..++|+|+|+.++.+.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 6666666543 24555555544333222 222335788999999997765542 1457999998
Q ss_pred CC-CeeeeEEe-----cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC----CCCCceEEEec
Q 001396 557 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 626 (1086)
Q Consensus 557 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 626 (1086)
.+ +.....+. ... ....+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 63 33332211 111 0136788999999988888778899999998 5666666654321 11478999999
Q ss_pred CCCEEEEEECCC
Q 001396 627 NGTLLAVIANEN 638 (1086)
Q Consensus 627 ~~~~l~~~~~dg 638 (1086)
+++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 988887766654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-14 Score=170.13 Aligned_cols=250 Identities=10% Similarity=-0.009 Sum_probs=176.6
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCC-----EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 460 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-- 460 (1086)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+ ....+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence 4556789999999999999876543 899999999875542 12 222367899999999 5666666655
Q ss_pred --------------EEEEeCCCCcee--EEeec--CCcceEEEeecccCCccEEEEEEc-----CCeEEEEEcCC-----
Q 001396 461 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 512 (1086)
Q Consensus 461 --------------i~iwd~~~~~~~--~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~----- 512 (1086)
|++|++.++... ..+.. |...+..+.| ++||++|+.++. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999888632 22232 4555777777 557788887765 67899999986
Q ss_pred -Cc-eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEE
Q 001396 513 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 588 (1086)
Q Consensus 513 -~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~ 588 (1086)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++.. .+.+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 42 34444444444444 58899999888775443467899999988742 34444443 013678889997777777
Q ss_pred EEECCCc--EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 589 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 589 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+++..||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888875 566787778877777655 334677889999877664432 4789999998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=148.80 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=178.2
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+..+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~ 76 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL 76 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence 3345556666688999999999867889999999999999887 322 3346678999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEE----e-------------CCCc
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITC----G-------------DDKT 460 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~----~-------------~d~~ 460 (1086)
+|+|+++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.
T Consensus 77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence 99999888877778999999988764321111111 123567899999998 67763 2 1345
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-CCce---eEEecCCCCceEEEEEecCCC
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR 536 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~d~~ 536 (1086)
|..++.. ++ +..+..+......++|+ +++..+++.+.++.|.+|++. .+.. ...+......+..++++++|+
T Consensus 155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence 6666654 44 44455566777889884 466777777888999999987 3333 223333445567899999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEE-ecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
+.++. .+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+.++
T Consensus 231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 77665 2359999986 77777777766 5 889999 5888999998875 455566665543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-14 Score=170.56 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=173.3
Q ss_pred cCCCCceEeeecCCCceEEEEEec-cC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTN-VG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~-dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
+|...+..++|||||++ ||.++. +| .|++||+.+|+.+.. . + ....+..++|||
T Consensus 122 ~~~~~~~~~~~SPDg~~-la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wsp 180 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEY-FAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTH 180 (710)
T ss_dssp TSCEEEEEEEECTTSSE-EEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECT
T ss_pred CCCEEEEEEEECCCCCE-EEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEe
Confidence 45557889999999996 554444 33 899999999987642 1 1 112366799999
Q ss_pred CCCEEEEEeCCCE----------------EEEEEecCCCcccc-ceEeccccccEeEEEecCCCCcEEEEEEeC-----C
Q 001396 401 DGSLLGVAYSKHI----------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D 458 (1086)
Q Consensus 401 dg~~las~~~d~~----------------i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-----d 458 (1086)
||+.|+.++.++. |++|++.+++.... ......|...+..++|+|||+. |+..+. +
T Consensus 181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~ 258 (710)
T 2xdw_A 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPV 258 (710)
T ss_dssp TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSC
T ss_pred CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCc
Confidence 9999999987765 99999988763211 1112235566889999999995 444432 5
Q ss_pred CcEEEEeCCC------Cc-eeEEeecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCce--eEEecCCC--
Q 001396 459 KTIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG-- 523 (1086)
Q Consensus 459 ~~i~iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~--~~~~~~~~-- 523 (1086)
..|++||+.+ +. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 7899999987 54 466676676666543 433 55566655543 3699999987642 23333333
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-E---CCCcEEEE
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-G---DDHVIKIW 599 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s---~dg~i~iw 599 (1086)
..+..++|++++.++++... ++...|++||+.+|+.++.+..+. ..+..+.++|+++.++.. + ..++|+.|
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CeEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 36788999877766666654 335678899987888777777655 778899999998877643 2 45789999
Q ss_pred EcCCCe
Q 001396 600 DMNKVQ 605 (1086)
Q Consensus 600 d~~~~~ 605 (1086)
|+.+++
T Consensus 411 d~~tg~ 416 (710)
T 2xdw_A 411 DLTKEE 416 (710)
T ss_dssp ETTSSS
T ss_pred ECCCCc
Confidence 998877
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-09 Score=130.18 Aligned_cols=592 Identities=13% Similarity=0.085 Sum_probs=337.7
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|+++.-.++|. |=.|+.+| +..||-.+ . +.|....... .. ..-....|.++...++|..|-.|
T Consensus 19 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGF--LWFATEEG-LNKFDGTR---F-----ITYYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEECSSS---E-----EEECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCC--EEEccCCc-CccccCCc---e-----EEEEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence 4799999999996 44556655 66677432 1 1111100000 00 00013569999999988845567
Q ss_pred eCCCEEEEEEecCCCccccceE-ecc---ccccEeEEEecC--CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-----
Q 001396 409 YSKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG----- 477 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~-~~~---h~~~v~~v~~s~--d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 477 (1086)
+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.|..+|..+++... +..
T Consensus 84 t~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~ 159 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVPA 159 (781)
T ss_dssp ESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCTT
T ss_pred eCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCcccC
Confidence 7774599999887542210000 000 123688888877 665 4445545568899987765432 321
Q ss_pred -CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-------CCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 478 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 478 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
....|.++... .++ .|..++.++-|..||..+.+...... .....|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 12456766653 344 56667777668889877654432211 1235688898888888766542 2
Q ss_pred eEEEEeCCCCeeeeEEecc----cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc-------CC-----
Q 001396 550 FLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG----- 613 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~----- 613 (1086)
-+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 3899998777654322211 11235788998887764 6667765678999988765432211 10
Q ss_pred CCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 614 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
-....|.++...++|. |-+|+.++-|..++........ ... . +..
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~----------------------~~~- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------S----------------------PTQ- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------------------C-
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------C----------------------ccc-
Confidence 1123477788888776 5566666677777765432111 100 0 000
Q ss_pred cceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccC
Q 001396 694 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 773 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 773 (1086)
. .+.......|.++...++|... .++.++-+..|+......
T Consensus 355 ---------------------~------~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~----------- 395 (781)
T 3v9f_A 355 ---------------------M------NESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA----------- 395 (781)
T ss_dssp ---------------------C------CSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE-----------
T ss_pred ---------------------c------ccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE-----------
Confidence 0 0000023457888888888744 445444466665432110
Q ss_pred CceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc--CCCCCeEEEEEcCCCCC
Q 001396 774 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNN 851 (1086)
Q Consensus 774 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~ 851 (1086)
..+.. ........|.+++..++|.+.+...++.+..++..+++...... .....|.++...+ +++
T Consensus 396 -~~~~~-----------~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~ 462 (781)
T 3v9f_A 396 -IYNKE-----------NRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK 462 (781)
T ss_dssp -ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE
T ss_pred -EEccC-----------CCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC
Confidence 00000 00014567889999888887775556778899988776543322 1346799999887 665
Q ss_pred EEEEEeCCCeEEEEEcCCceeEEEeccc-----cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCC
Q 001396 852 VIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 926 (1086)
Q Consensus 852 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 926 (1086)
+.+ |+. +-|..||..+++........ ...|.++...++|++.+.....| |..||..++.... +....+.
T Consensus 463 lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l 536 (781)
T 3v9f_A 463 IWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF 536 (781)
T ss_dssp EEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTTC
T ss_pred EEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC
Confidence 544 565 55899998876543322212 45799999999998777544355 7788887654222 2222221
Q ss_pred ccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecc-ccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 927 MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW-FPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 927 ~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~-~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
. ...|.++...++|.+.+++..|-+..||..+++...-- ..+ ....|.++...++|.+.++ +..| |..++..++
T Consensus 537 ~--~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 537 C--SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKK 612 (781)
T ss_dssp S--CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTT
T ss_pred C--CCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCC
Confidence 1 24688999999999887766444488888766532210 111 1346788888989987664 4555 777888766
Q ss_pred ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1005 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
... .+....-++.. .....++...+ +| .|..|+.+|- ..++.
T Consensus 613 ~~~-~~~~~dGl~~~----~f~~~~~~~~~-~G-~l~~g~~~Gl-~~f~p 654 (781)
T 3v9f_A 613 CFY-TYDHSNNIPQG----SFISGCVTKDH-NG-LIYFGSINGL-CFFNP 654 (781)
T ss_dssp EEE-EECGGGTCCSS----CEEEEEEEECT-TS-CEEEEETTEE-EEECS
T ss_pred ceE-EecccCCcccc----ccccCceEECC-CC-EEEEECCCce-EEECh
Confidence 543 33322222221 12234566666 44 4666778874 44554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-13 Score=148.56 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=152.9
Q ss_pred CeeEEEeecCCCEEEEEeC----Ce--EEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC------------
Q 001396 798 AVPCFALSKNDAYLFSASG----GV--ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD------------ 859 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~d----g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d------------ 859 (1086)
.+..++|||||++|+..++ +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 4678999999999998862 33 888888888776555433 3 99999999 88888877632
Q ss_pred ---------------CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC-------cEEEEECCCCceeee
Q 001396 860 ---------------STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA-------QIFVWDVDGWGIQTC 917 (1086)
Q Consensus 860 ---------------g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg-------~i~iwd~~~~~~~~~ 917 (1086)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78899999999 877776542 3455555443321
Q ss_pred eeeeccCCCccCCCCceEEEEecCCCEEEE-EeC--------CeEEEEEcCCccceeccccCCccCEEE-EEEeCCCCEE
Q 001396 918 RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE--------THLAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMV 987 (1086)
Q Consensus 918 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l 987 (1086)
.+... . .+..+ ||||++|+. +.+ ..|.+|| +++. ..+..+|...+.. +.|+ || ++
T Consensus 212 -~l~~~---~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 212 -KMFEK---V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp -EEEEE---E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred -EeccC---c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 22111 1 23333 999999887 422 3577888 5554 3345566778886 9999 98 99
Q ss_pred EEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE-EEEccC
Q 001396 988 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV-YVIEPN 1055 (1086)
Q Consensus 988 ~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v-~vw~~~ 1055 (1086)
++++.++.+++| +.+++...... . .....+++|+| ..+++++.++.. .+|.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~------~-----~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAK------G-----RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEEC------S-----SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCceEEEec------C-----CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999999 88665532221 0 12345678887 577777777765 777764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=168.36 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=167.4
Q ss_pred cCCCccEEEEEECCCCCEEEEE-----eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc-
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT- 460 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~- 460 (1086)
.+|...+..++|||||++||.+ +.+.+|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3566789999999999999954 34568999999998754110 11111 126899999999 6777777765
Q ss_pred ------------EEEEeCCCCce----eEEeecCCcceEEEeecccCCccEEEEEEcCC----eEEEEEcCCCceeEEec
Q 001396 461 ------------IKVWDAVTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 461 ------------i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~ 520 (1086)
|++|++.++.. +.....|...+..+.| ++||++|+.++.++ .|.+|+..++... .+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence 99999998873 2333345567778887 45778888777665 6666765444433 333
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee---eeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.+...+....+ ++|+ ++..+.....+..|++||+.++.. ...+..+. ...+..++|+ ++..+++...|+..+
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 33344455555 6777 655543333468899999988753 33333321 2467888888 667778888899888
Q ss_pred EEEcC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 598 IWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 598 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88665 455555555432 234667888999987774433 4789999998775
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-13 Score=148.77 Aligned_cols=278 Identities=10% Similarity=-0.016 Sum_probs=191.5
Q ss_pred ccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccc
Q 001396 349 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 428 (1086)
Q Consensus 349 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 428 (1086)
.+++|.+||..+++..... +... . -.........+++. ++++.++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRA------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHH------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhhh------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999998865421 0000 0 00122446677774 455555666678999999999886653
Q ss_pred eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC-----cceEEEeecccCCccEEEEEE-cC
Q 001396 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD 502 (1086)
Q Consensus 429 ~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~d 502 (1086)
+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 32 345688999999985 66666579999999999999887776433 14456666 2 334444443 48
Q ss_pred CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC------ceeEEEEeCCCCeeeeEEecccccCCceE
Q 001396 503 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS 576 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 576 (1086)
+.|.++|..+.+....+... .....++++|+|++++++..+... .+.|.++|..+++....+.... .....
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~ 228 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS 228 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence 99999999998877666543 345678999999977766432110 2689999999998887775432 13688
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEE----ECCCcEEEEECCCCCee
Q 001396 577 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV 651 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~ 651 (1086)
.++++|++++++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+
T Consensus 229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 9999999999988765 89999999887642111111123467899999 45555555 568899999998 7777
Q ss_pred eecc
Q 001396 652 DAAG 655 (1086)
Q Consensus 652 ~~~~ 655 (1086)
..+.
T Consensus 306 ~~i~ 309 (328)
T 3dsm_A 306 DEFY 309 (328)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-12 Score=140.49 Aligned_cols=204 Identities=13% Similarity=0.065 Sum_probs=143.3
Q ss_pred eeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEE
Q 001396 799 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 874 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 874 (1086)
...++|+|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34688999999888775 47899999999999998864321 233443 667777888899999999876 55433
Q ss_pred Eecccc----CCeE-EEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeeeeeecc------CCCccCCCCceEEEEecCC
Q 001396 875 KLEGHS----KRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 875 ~l~~h~----~~v~-~l~~s-pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg 942 (1086)
....+. .++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+..+ .+... +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 221121 2222 24664 6775554 56689999999987543222222211 11111 245568899999
Q ss_pred CEEEEEe-----------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEE-ECCCcEEEEEcCCCceeee
Q 001396 943 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1009 (1086)
Q Consensus 943 ~~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~-~~Dg~v~vWd~~~~~~~~~ 1009 (1086)
+.+.+.. .+.|.++|+++++.+..+..+ .++.++.|++|++ +|+++ ..++.|.|+|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 256999999999999887664 4788999999997 66665 4589999999999999988
Q ss_pred ec
Q 001396 1010 IL 1011 (1086)
Q Consensus 1010 ~~ 1011 (1086)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 87
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-13 Score=139.04 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=180.0
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccEEEEEECCCCCEEEEEeCCCEEEEEEecC
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 421 (1086)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|+.||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 689999999999999999998865 33343 4688999999999998 35778999999 6
Q ss_pred CCccccceEeccc-cccEeEEEecCCCCcEEEEEEeC-CCcEEEEeCCCCceeEEeecC------CcceEEEeecccCCc
Q 001396 422 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 493 (1086)
Q Consensus 422 ~~~~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s~~~-d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~ 493 (1086)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+... ......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 77555 34443 34688999999999 7787776 778888884 88888776521 122333343 5678
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc--
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 571 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 571 (1086)
.++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 88888776653 4556788899999988764 457999999999999888754311
Q ss_pred -CCceEEEEEecCCCEEEEEECC--------CcEEEEEc-CCCeeEEEEcCCCCCCCCceEE
Q 001396 572 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 572 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
...+..+...++|..+++.... +..+++.+ .+++.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1337788889999888776421 23355555 4777777776655544455543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-12 Score=141.38 Aligned_cols=246 Identities=8% Similarity=-0.029 Sum_probs=169.7
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
......+.++...+.+++|+|+|+ +++++..++.|.+||..+++.... ...+...+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK 93 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence 445566777777889999999998 688888889999999988875432 223557899999
Q ss_pred ECCCCCEEEEEeCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCC
Q 001396 398 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV 467 (1086)
Q Consensus 398 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~ 467 (1086)
|+|+|+++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~ 170 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD 170 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence 99999988887666 68999999887643211 1113445799999999998 5665543 3567777766
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEE-EEEEcCCeEEEEEcCCC-ceeEE------ecCC-CCceEEEEEecCCCEE
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL 538 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~d~~~l 538 (1086)
+++... +..+...+..++|+ +++..+ ++.+.++.|.+||+... ..... .... ...+..++++++|++.
T Consensus 171 ~~~~~~-~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 171 FRTVTP-IIQNISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp SCCEEE-EEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CCEEEE-eecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence 555433 32333456778884 466655 45556899999999642 22111 1111 2467889999999977
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccc---cCCceEEEEEecCCCEEEEEECCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
++... ++.|.+||. +++.+..+..... +...+.+++|+|+++.|+.++.++
T Consensus 248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 76643 457999998 5666666654430 011688999999988887766554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-12 Score=138.68 Aligned_cols=281 Identities=12% Similarity=0.004 Sum_probs=187.2
Q ss_pred eecCCCceEEEEEe-ccC---cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe-
Q 001396 335 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 409 (1086)
Q Consensus 335 ~~spdg~~lla~gs-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 409 (1086)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 44578876444432 223 889999999987653 2222233 899999999999885
Q ss_pred ---------CCCEEEEEEecCCCccccceEec--c---ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeE
Q 001396 410 ---------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 410 ---------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~~~ 473 (1086)
.++.|.+||..+.+.+.... +. . +......++|+|||++ |+.++ .++.|.++| ++++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999999876554321 11 0 0123457999999994 55444 257899999 9999887
Q ss_pred E-eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec-----CCCCc-eEEEEEecCCCEEEEEeeCCC
Q 001396 474 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 474 ~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
+ +.... . +.+.+.. ...+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~~-~---~~~~~~~-~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSPT-C---YHIHPGA-PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCCc-e---EEEEeCC-CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 64322 1 2333332 246677888999999999 666553221 11112 233566777666554443
Q ss_pred CceeEEEEeCCCCe--eeeEEeccc-------ccCCceEEEEEecCCCEEEEEEC----------CCcEEEEEcCCCeeE
Q 001396 547 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 607 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~ 607 (1086)
.+.+.+.|..++. .+..+.... ........+.++|++++++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4578999987553 222222110 00123445789999998888653 357999999999999
Q ss_pred EEEcCCCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeee
Q 001396 608 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 653 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~ 653 (1086)
..+.... ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9987543 368999999999 777776 489999999999988766
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-13 Score=145.03 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=195.0
Q ss_pred EeeecCCCceEEEEEec----cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 333 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
.....||+++++++-.. ++.|.+.|..+++.+..... | ..+ . +++||||++|+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v------------------G-~~P-~-va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG------------------G-FLP-N-PVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE------------------C-SSC-E-EEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC------------------C-CCC-c-EEECCCCCEEEEE
Confidence 45668999976665543 68999999999998865221 2 223 4 9999999999877
Q ss_pred e----------CCCEEEEEEecCCCccccceEecc-----ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCce
Q 001396 409 Y----------SKHIVQLYAYHGGSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR 471 (1086)
Q Consensus 409 ~----------~d~~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~ 471 (1086)
. .++.|.+||..+++.+..+. +.. .......++|+|||++ ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 35789999999987665432 111 0124567999999995 44443 378999999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-CceeEEec----CCCCce-EEEEEe-cCCCEEEEEeeC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGC-TRMAYS-ANGRRLFSCGTS 544 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~----~~~~~i-~~~~~s-~d~~~l~~~~~~ 544 (1086)
+.++..... .. +.|. ..+.+++.+.||.+.+.++.. ++...... ....++ ....|. ++|++++...
T Consensus 173 v~tI~v~g~---~~-~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPDC---YH-IFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCSE---EE-EEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCCc---ce-eecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 988854321 11 1222 335677888999999999876 34322111 111222 224564 6776665433
Q ss_pred CCCceeEEEEeCCCCe--eeeEEecc-------cccCCceEEEEEecCCCEEEEEEC----------CCcEEEEEcCCCe
Q 001396 545 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ 605 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~ 605 (1086)
.+.|++.|..++. .+..+.-. .........+++++++++++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 4579999987654 33333200 000123445778999999988642 2579999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeeeccc
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..+++.+..+..
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 999987653 368999999997 666654 489999999999988877764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-11 Score=133.57 Aligned_cols=285 Identities=11% Similarity=0.053 Sum_probs=194.6
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
+..+...+.+++++++|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|.
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE 69 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence 345556899999999998 56665557899999988 543321 0 223457899999999999
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE-eecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v 482 (1086)
+.++...++.|..||.. ++ +... .+......+..+++.++|+ ++++...++.|.+||. +++.... ...+...+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEEEETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEeCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 88887778889999976 33 2211 2223455789999999998 6777767889999998 6654432 23344567
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 561 (1086)
..+++. +++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|.+||. +++.
T Consensus 144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI 215 (299)
T ss_dssp EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence 888874 46667777667889999998 4444332 3334456889999999997666432 457999998 6664
Q ss_pred eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 562 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
.. +... .....+.+++++++|+..++...++.|.+||. +++. ..+....+...+.++++ ++|.+.++.. .+.+.
T Consensus 216 ~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 216 TE-FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred EE-EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 33 3221 12357889999999886665557889999998 4543 33332232345788999 8887666554 56777
Q ss_pred EEECCCC
Q 001396 642 ILETPES 648 (1086)
Q Consensus 642 iw~~~~~ 648 (1086)
.++..+.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7776643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.3e-12 Score=137.94 Aligned_cols=203 Identities=10% Similarity=0.011 Sum_probs=141.5
Q ss_pred eEEEeecCCCEEEEEe---CCeEEEEEccCceEEEE-EcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001396 800 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 875 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 875 (1086)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|++.+.+++.+.||.+.++|. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 3688999999998876 36799999 99998887 65322 24555645567777888999999999 8876633
Q ss_pred ec-----cccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCC----ccCCCCceEEEEecCCCEE
Q 001396 876 LE-----GHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 876 l~-----~h~~~v-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l 945 (1086)
.. ....++ ....+++++..++..+..+.+.+.|+.+........+...... .........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776655556788999999976542221222211110 0000224458899999988
Q ss_pred EEEe-----------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceeeee
Q 001396 946 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 946 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
.+.. .+.|.++|..+++.+..+..+ .....+.|+|||+ .++++. .++.|.|||+.+++.++++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7742 257999999999998876543 3688999999999 677776 4899999999999999774
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=143.59 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=183.6
Q ss_pred ccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecC
Q 001396 700 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 779 (1086)
Q Consensus 700 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1086)
.++++.++|..+.+....................+++. +++.+++...++.|.+||...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-------------------- 73 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT-------------------- 73 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc--------------------
Confidence 46788888876433221110000011112345667764 455555556678888876543
Q ss_pred CCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEE-eCCeEEEEEccCceEEEEEcCCC-----CCeEEEEEcCCCCCEE
Q 001396 780 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 853 (1086)
Q Consensus 780 ~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 853 (1086)
++.+.... .......++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 74 --~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 74 --FKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --CCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --cEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33233221 23567889999999655555 37899999999999887776433 14556777 4 66666
Q ss_pred EEEe-CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCC----------CcEEEEECCCCceeeeeeeec
Q 001396 854 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 922 (1086)
Q Consensus 854 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~ 922 (1086)
++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6654 4889999999999988877643 345789999999988877655 789999998866432 2222
Q ss_pred cCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceec-cccCCccCEEEEEEeC-CCCEEEEE----ECCCcE
Q 001396 923 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 996 (1086)
Q Consensus 923 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~s~----~~Dg~v 996 (1086)
..+ .....++|+||+++|.++.. .|.+||..+++.... +...+......++++| ++..+++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14689999999999988654 999999998876432 2222246789999999 55555555 568899
Q ss_pred EEEEcCCCceeeeec
Q 001396 997 SIHEASNLEVQCRIL 1011 (1086)
Q Consensus 997 ~vWd~~~~~~~~~~~ 1011 (1086)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99888876
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=141.52 Aligned_cols=238 Identities=11% Similarity=0.063 Sum_probs=169.2
Q ss_pred ecCCCccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 386 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
+..+.....+++|+|+|+ +++++..++.|.+||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445566788999999998 7778888899999999886 33 3556777899999999998 67777667899999
Q ss_pred eCCCCceeEEeecCC----cceEEEeecccCCccEEEEEEc-----------------CCeEEEEEcCCCceeEEecCCC
Q 001396 465 DAVTGSRTYSFEGHG----APVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~ 523 (1086)
|..+|+......... ..+..+++ +++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 998888654432221 23556777 457777777321 2345555443 3344444555
Q ss_pred CceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC-CCee---eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEE
Q 001396 524 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 599 (1086)
Q Consensus 524 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw 599 (1086)
.....++|+|+|+.+++... ++.|++|++. ++.. ...+.. ....+..++++++|+..++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 66789999999999854432 5679999986 5554 333422 23567789999999865555 7899999
Q ss_pred EcCCCeeEEEEcCCCCCCCCceEEE-ecCCCEEEEEECCCcEEEEECCCC
Q 001396 600 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 600 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
|.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 986 777777765533 788999 58999999988764 445555544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-09 Score=129.22 Aligned_cols=536 Identities=11% Similarity=0.042 Sum_probs=310.3
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC--CCCEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 407 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las 407 (1086)
.|.++...++|+. |-.|+.++.+..||..+++...- .. ... .. ..-....|.++.... +|.+ ..
T Consensus 67 ~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~l-wi 132 (781)
T 3v9f_A 67 ELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGL-WV 132 (781)
T ss_dssp CEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEE-EE
T ss_pred ccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCE-EE
Confidence 6899999998872 33466665799999887664321 00 000 00 000124688998887 6654 44
Q ss_pred EeCCCEEEEEEecCCCccccceEec------cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-----
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----- 476 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~----- 476 (1086)
++.++.|..||..+++... +. -....|.++...++|. +..+..++-+..||..+++...-..
T Consensus 133 ~t~~~gl~~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 205 (781)
T 3v9f_A 133 CTYYRGIEYLDIATGKFTH----YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNP 205 (781)
T ss_dssp EESSSCEEEEETTTTEEEE----ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-----
T ss_pred EECCCCeeEEECCCCeEEe----eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCc
Confidence 5534448889987654221 11 1134588888887776 4446666568999987765432111
Q ss_pred --cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------cCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 477 --GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 477 --~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.....|.++.. +.++. |..++.+ -+.+||..+....... ......|.++...++|.+.+...
T Consensus 206 ~~l~~~~i~~i~~--d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~----- 276 (781)
T 3v9f_A 206 NSLPGNDVRCIYK--DTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE----- 276 (781)
T ss_dssp ---CCSSEEEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----
T ss_pred ccCCCCceeEEEE--cCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----
Confidence 11345777765 44544 4455555 6888987655433211 12345688999888887655432
Q ss_pred ceeEEEEeCCCCeeeeEEe-----------cccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc-----
Q 001396 548 ESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----- 611 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----- 611 (1086)
.+-|.++|..++....... ........|.++...++|. |..|+.++-|..++..++.......
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 1238889987765432221 0112236789999888875 6667777778999987654332211
Q ss_pred --CCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCC
Q 001396 612 --AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 689 (1086)
Q Consensus 612 --~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s 689 (1086)
..-....|.+++..++|. |.+|+.++-|..|+..++... .+..
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~--------------------------------- 400 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE--------------------------------- 400 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC-----------------------------------
T ss_pred ccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC---------------------------------
Confidence 111123477788777776 455665666888876532110 0000
Q ss_pred CCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc
Q 001396 690 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 769 (1086)
Q Consensus 690 ~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 769 (1086)
+ .......|.++...++|...+ ++.++.+..++....
T Consensus 401 ~---------------------------------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--------- 437 (781)
T 3v9f_A 401 N---------------------------------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK--------- 437 (781)
T ss_dssp ------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC---------
T ss_pred C---------------------------------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC---------
Confidence 0 000234577787777777444 555444555543221
Q ss_pred cccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCC-----CCCeEEEE
Q 001396 770 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLA 844 (1086)
Q Consensus 770 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~ 844 (1086)
. +...... ......|.++...++|.+.+... +.+..+|..+++........ ...|.+++
T Consensus 438 -------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 438 -------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp -------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred -------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence 1 1111000 01346788999988887666554 67889998876554333222 46789999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeee
Q 001396 845 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 921 (1086)
Q Consensus 845 ~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 921 (1086)
..+ ++++.+ |+.++-+..||..+++...-... ....|.++...++|.+.++.. +|.|..||..+++.. ...
T Consensus 502 ~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~---~~~ 575 (781)
T 3v9f_A 502 QDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ---VFQ 575 (781)
T ss_dssp ECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE---EEC
T ss_pred EcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE---Ecc
Confidence 988 776655 55544488899877654332111 235689999999998777554 775488888765422 222
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccc--cC---CccCEEEEEEeCCCCEEEEEECCCcE
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PI---SSVPISQATFSCDCRMVFTSFVDGTL 996 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~---h~~~v~~l~fs~dg~~l~s~~~Dg~v 996 (1086)
...+... ..|.++...++|.+.+++.. .|..++..++.... +. .+ ..-...++...+||.+++ |+.+| +
T Consensus 576 ~~~gl~~--~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l 649 (781)
T 3v9f_A 576 RKEGLPN--THIRAISEDKNGNIWASTNT-GISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-L 649 (781)
T ss_dssp GGGTCSC--CCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-E
T ss_pred ccCCCCC--ceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc-e
Confidence 2222221 35788999999987777644 47778877654322 11 11 112235677788887666 66788 4
Q ss_pred EEEEcC
Q 001396 997 SIHEAS 1002 (1086)
Q Consensus 997 ~vWd~~ 1002 (1086)
..++-.
T Consensus 650 ~~f~p~ 655 (781)
T 3v9f_A 650 CFFNPD 655 (781)
T ss_dssp EEECSC
T ss_pred EEEChh
Confidence 445543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=167.28 Aligned_cols=249 Identities=9% Similarity=-0.069 Sum_probs=163.6
Q ss_pred cCCCCceEeeecCCCceEEEEEe----ccCcEEEEecCCCcee-eeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGT----NVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs----~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
+|...+..++|||||++|+.+.+ .+.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 56667999999999997444433 3457999999999865 21 0 1111 125799999
Q ss_pred CCCEEEEEeCCCE-------------EEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCCC----cEE
Q 001396 401 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 462 (1086)
Q Consensus 401 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~----~i~ 462 (1086)
||+.|++++.+.. |++|++.++.... .......|...+..++|+|||+. |+..+.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988765 9999999876321 11122345567899999999995 44444344 677
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE---cCCeEEEEEcCCCce---eEEecCC-CCceEEEEEecCC
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 535 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~d~ 535 (1086)
+||..+++ ...+..+...+....+ . ++.+++... .++.|.+||+.++.. ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~--~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA--W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE--E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe--c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77766664 4455556555555554 2 444444443 358899999987653 3333333 4567888888 66
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 606 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 606 (1086)
.++++... ++...|.++++. ++..+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666654 234456666654 44555555432 25677888999998777432 347899999998774
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=137.47 Aligned_cols=222 Identities=8% Similarity=-0.018 Sum_probs=165.7
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCe
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 883 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v 883 (1086)
.++.|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456677776 7999999999999999998766 5789999999 888888 45788999999 899999988653 478
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeecc-CCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCC
Q 001396 884 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 960 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~ 960 (1086)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .++. .....+++.++|.++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7777777764 333222222111 1111 135567889999999984 67899999998
Q ss_pred ccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001396 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1040 (1086)
Q Consensus 961 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1040 (1086)
|+.+.++.. ...+.++.+.++|..+++++.++.|..+|..+|+.+.++..... +.. .-..+..++..+ +++++
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 888776443 24556678899999999998888999999999999988863221 111 113456677777 67777
Q ss_pred EEEe
Q 001396 1041 AVGL 1044 (1086)
Q Consensus 1041 ~~~~ 1044 (1086)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7663
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=160.43 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=164.5
Q ss_pred CCCccEEEEEECCCCCEEEEEeCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCc--
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 460 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~-- 460 (1086)
+|...+..++|||||++||.++.+ .+|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999875431 122223468999999 8 4555555443
Q ss_pred ------------EEEEeCCCCce--eEEeec--CCcceEEEeecccCCccEEEEEEcCC-----eEEEEEcCCC--ceeE
Q 001396 461 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 517 (1086)
Q Consensus 461 ------------i~iwd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~--~~~~ 517 (1086)
|++|++.++.. ...+.. +...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999988763 223332 3335777777 56888888877554 8999999876 3133
Q ss_pred EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEecccccCCceEEEEEecCCCEEEEEECCCc
Q 001396 518 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 595 (1086)
Q Consensus 518 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 595 (1086)
.+..+....... ++|+|+.|+..+..+.....|++||+.++ +....+..+. ..+..+.++ ++..+++...++.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 333333344444 35999999888765444678999999885 3333443333 456677777 5566777888888
Q ss_pred EEEEEcC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 596 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 596 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
.++|.+. ++.....+..+. ...+..++++|+++.++.... .++|++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777654 455566665432 234677889999876664322 4789999998764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-11 Score=128.04 Aligned_cols=279 Identities=10% Similarity=0.079 Sum_probs=190.8
Q ss_pred cccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 727 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 727 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
+...+.++++.++|..+++...++.+.+|+.. .. ....... .....+..+++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-----------------------~~~~~~~--~~~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-----------------------ITEYPLP--TPDAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-----------------------EEEEECS--STTCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-----------------------eEEecCC--cccCceeeEEECC
Confidence 34578999999999977776667888887644 21 1111111 1345688999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCceE-EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-EeccccCCe
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRV 883 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~v 883 (1086)
+|.++++.. ++.|..|+.. ++. ...+......+.++++.+ +++++++...++.|..||. +++... .+..+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888776 6889999986 333 222223456789999999 8888887777889999998 555433 233355678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCcc
Q 001396 884 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 962 (1086)
Q Consensus 884 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~ 962 (1086)
.++++.++|+++++...++.|..||. +++... +..... . ..+..++++++|++.++. .++.|.+|+. +++
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~-~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP-A---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST-T---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC-C---CcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 99999999998888777888999998 544322 111111 1 247899999999977765 4678999998 666
Q ss_pred ceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001396 963 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1042 (1086)
Q Consensus 963 ~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1042 (1086)
........+...+.+++++++|.++++...++.|..||. ++... .+. .+.. ...+.++++ + ++.++++
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~----~~~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK----SAEPHGICF-D-GETIWFA 282 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS----SCCEEEEEE-C-SSCEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC----CCccceEEe-c-CCCEEEE
Confidence 433223335678999999999997776657789999998 45432 222 1111 123567777 6 5666555
Q ss_pred EeCCCcEEEEccCC
Q 001396 1043 GLTNGEVYVIEPNE 1056 (1086)
Q Consensus 1043 ~~~dg~v~vw~~~~ 1056 (1086)
.. .+.|..++...
T Consensus 283 ~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 283 ME-CDKIGKLTLIK 295 (299)
T ss_dssp ET-TTEEEEEEEC-
T ss_pred ec-CCcEEEEEcCc
Confidence 44 67777777643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=138.05 Aligned_cols=240 Identities=8% Similarity=-0.042 Sum_probs=166.7
Q ss_pred CceEeeecCCCceEEE-EEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 330 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla-~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 678999999997 566 556778999999766543211 11233567889999999966665
Q ss_pred eCCCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEee
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 487 (1086)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2335689999999998 6777777889999986655443322233345677887
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
. +++.++++...++.|.+||................+..++++++|...++... ++.|.+||..+.........
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 5 46667777777899999998776554433333357889999999976666543 55699999876543322112
Q ss_pred ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
. ...+.+++++++|+.+++...++.|+++++...+
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 2568899999999877888889999999987654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=137.10 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=143.8
Q ss_pred eEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-
Q 001396 800 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 875 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~- 875 (1086)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||++.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3568899999888875 36899999999999988874321 334443456677777888888888866655432
Q ss_pred ---eccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc-c---CCCCceEEEEecCCCEEEE
Q 001396 876 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 876 ---l~~h~~~v-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~s~dg~~l~~ 947 (1086)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... . .......++++||++++.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999988888888899999999765432211111110000 0 0012334799999998877
Q ss_pred Ee-----------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceeeee
Q 001396 948 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 948 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
.. ++.|.+.|..+.+.+..+..+ .....+.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999999999886543 3588999999999 888887 5899999999999999887
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-12 Score=134.44 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.4
Q ss_pred cEEEEEECCCCCEEE-EEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 392 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 392 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
...+++++++|++++ +...++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 778999999999777 44678899999986654221 1123335688999999998 566655 8899999976554
Q ss_pred eeEEee-cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 471 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 471 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335678888854 6677777778899999976554443322233346788999999986666543 55
Q ss_pred eEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCC
Q 001396 550 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 629 (1086)
Q Consensus 550 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 629 (1086)
.|.+||..++.......... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+.+++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 79999988765443322222 568899999999766666678899999987654433 221 2223578999999999
Q ss_pred EEEEEECCCcEEEEECCCCC
Q 001396 630 LLAVIANENRIKILETPESN 649 (1086)
Q Consensus 630 ~l~~~~~dg~i~iw~~~~~~ 649 (1086)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-10 Score=125.63 Aligned_cols=280 Identities=10% Similarity=0.027 Sum_probs=190.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.....+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|.+.
T Consensus 17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 76 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW 76 (300)
T ss_dssp STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence 3445889999999998 56666667999999987 553321 1 22344678999999999988
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE-EeecCCcceEE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS 484 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~ 484 (1086)
++...++.|..||.. ++. .. ..+......+.++++.++|+ ++++...++.|..+|.. ++... .+......+..
T Consensus 77 v~~~~~~~v~~~d~~-g~~-~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 77 FTENGANKIGKLSKK-GGF-TE-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp EEETTTTEEEEECTT-SCE-EE-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred EEecCCCeEEEECCC-CCe-EE-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877778889999987 543 21 12233446789999999998 67776668899999987 66542 23334456788
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
+++. +++.+.++...++.|..+|. +++... ........+..++++++|+..++... .+.|.+||. +++...
T Consensus 151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence 8874 46666666666889999988 433332 22233456889999999987766532 456999998 554433
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 643 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 643 (1086)
.... .....+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+
T Consensus 223 ~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 223 YDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 2111 11356889999999986666656789999998 45433 332232234578999999998655544 4 66666
Q ss_pred EC
Q 001396 644 ET 645 (1086)
Q Consensus 644 ~~ 645 (1086)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 54
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-12 Score=139.23 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=192.3
Q ss_pred CCCceEEEEEecc----CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe----
Q 001396 338 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 409 (1086)
Q Consensus 338 pdg~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 409 (1086)
|++++++++...+ +.|.++|..+++.+..... | ..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 5666655655544 7999999999998865322 2 234 799999999998885
Q ss_pred ------CCCEEEEEEecCCCccccceEec--c---ccccEeEEEecCCCCcEEEEEEe--CCCcEEEEeCCCCceeEEee
Q 001396 410 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 410 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~v~~s~d~~~l~l~s~~--~d~~i~iwd~~~~~~~~~~~ 476 (1086)
.++.|.++|..+++.++.+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988665432 21 0 1123567899999995 44444 36889999999999998886
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE----ecCCCCc-eEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
.... ....+... ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4667778888888888854444321 1222222 123567899888877654 4579
Q ss_pred EEEeCCCCeee--eEEecc-----c--ccCCceEEEEEecCCCEEEEEEC----------CCcEEEEEcCCCeeEEEEcC
Q 001396 552 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 552 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 612 (1086)
++.|...+... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655421 222110 0 00012223689999998887642 35799999999999999875
Q ss_pred CCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeeec
Q 001396 613 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 654 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 654 (1086)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 43 258999999999 888888 5899999999999888775
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-12 Score=155.04 Aligned_cols=248 Identities=11% Similarity=0.006 Sum_probs=159.4
Q ss_pred cCCCCceEeeecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+|...+..++|||||++|+.+.+.+| +|++||+.+|+.+.. . . +...+..++||||
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD 219 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN 219 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence 34447889999999997444443334 599999999987542 1 0 1122357899999
Q ss_pred CCEEEEEeCCCE--------------EEEEEecCCCccccceEec--cccccEeEEEecCCCCcEEEEEEeC-----CCc
Q 001396 402 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT 460 (1086)
Q Consensus 402 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~d~~~l~l~s~~~-----d~~ 460 (1086)
+.|+.++.++. |++|++.++...... .+. .+...+..+.|||||+. |+..+. ...
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT 295 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence 99999876543 899999876532111 222 33345889999999994 444443 348
Q ss_pred EEEEeCCCC--ceeEEeecCCcceEEEeecccCCccEEEEEEc----CCeEEEEEcCCC--ceeEEecCCCCceEEEEEe
Q 001396 461 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSL--GARVDYDAPGLGCTRMAYS 532 (1086)
Q Consensus 461 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s 532 (1086)
|++||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+.+. .....+..+...+..++++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 999999887 425556555555544432 35567777665 345999998874 2333444444556677776
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 606 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 606 (1086)
++.++++... ++...|+++++. +...+.+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4555555544 334556667764 44555555332 26788899999988666432 357899999998873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-11 Score=127.69 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=166.9
Q ss_pred ccCCCCceEeeecCCCceEEEE-------EeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~-------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.-....+++|+++|+ ++++ ++.++.|.+||..+++.... .. ....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence 33344778999999997 5776 56789999999888875421 00 00123446789999
Q ss_pred ECCC-CCEEEEEeCCCEEEEEEecCCCcccc-ceEecc-ccccEeEEEecCCCCcEEEEEEeCC---------------C
Q 001396 398 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K 459 (1086)
Q Consensus 398 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d---------------~ 459 (1086)
++++ |+++++.. .+.|.+||.+ ++.... .....+ ....+.+++++++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555554 4469999988 653221 100011 224588999999998 56665544 5
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeec--ccCCccEEEEE-EcCCeEEEEEcC-CCce-----eEEecCCC-CceEEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIFSI-SVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRM 529 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~-s~dg~i~vwd~~-~~~~-----~~~~~~~~-~~i~~~ 529 (1086)
.|..||.. ++..... .+......++++ .++++..++.+ ..++.|.+||.+ .+.. ...+..+. .....+
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 67888865 5544332 333445777775 11566555544 568999999986 3321 12223332 567889
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCC
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 603 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 603 (1086)
+++++|+..++... ++.|.+||..+++.+..+..+. ..+.+++|+++++.|++++ .++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988877643 4579999998788777776554 6789999999999666554 568899999864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-09 Score=117.79 Aligned_cols=243 Identities=12% Similarity=0.016 Sum_probs=168.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+......+.++++.++|++.++...++.|.+||.. ++... ..+..+...+.++++.++|+ ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 33455788999999999988877778899999987 54322 12333446789999999998 667666678899999
Q ss_pred CCCCceeE-EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee-EEecCCCCceEEEEEecCCCEEEEEee
Q 001396 466 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.. ++... .+......+..+++. +++.++++...++.|..+|.+ ++.. .........+..++++++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 77 65432 222234567888875 466677777668899999887 4433 223334557889999999996655432
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
.+.|..+|. +++... +.... ....+..+++++++...++....+.|.+|+. +++..... .......+.+++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCCCCCCceEEE
Confidence 456999998 555443 32211 1256889999999876666666778999998 55544332 222234578899
Q ss_pred EecCCCEEEEEECCCcEEEEECC
Q 001396 624 FNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999866666567899999883
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-10 Score=127.79 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=164.1
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
...+.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3688999999997 788887789999999988765532 112 22233 9999999999988
Q ss_pred eCCC--EEEEEEecCCCccccceEecc-ccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE----eecCCcc
Q 001396 409 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 481 (1086)
Q Consensus 409 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 481 (1086)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 7765 799999877654332111112 4567889999996553 33466688999999987764322 2222222
Q ss_pred e--EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC---------------CCceEEEEEecCCCEEEEEeeC
Q 001396 482 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 482 v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
- ..++|++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3567777778899999987654 2222211 13478999999999666643
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccc------------ccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
.++..|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0267899999877764 4444431 00245789999999877777778888888765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-06 Score=100.57 Aligned_cols=534 Identities=9% Similarity=-0.018 Sum_probs=291.9
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
+|+.+ ....|+..++++..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 45444 45678999998654221 1112 22346789999997775 556666788999999875544333332224566
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
.+++.+. ++.+.++-...+.|.+.+++.................+++.|....|+..... ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 34566666677899999987665544443444567899999976666655321 14578888876554433
Q ss_pred EEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEE
Q 001396 564 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642 (1086)
Q Consensus 564 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 642 (1086)
... . ......++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~-~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVP-N---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EEC-S---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EEC-C---CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 333 2 25788999999888887765 567899999876544 233222 22346777765 444444445788888
Q ss_pred EECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCcccccccc
Q 001396 643 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 722 (1086)
Q Consensus 643 w~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 722 (1086)
.|..++.....+.........+.+....... +...+ ...++ +.-.+--........|..-
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C-------~~~ng---------~C~~~C~~~~~~~~~C~C~-- 292 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNEC-------ASSNG---------HCSHLCLAVPVGGFVCGCP-- 292 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTT-------TTTGG---------GCSSEEEEETTTEEEEECS--
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEe-------ccCCC---------CcchhhhcCCCCCeeEEcC--
Confidence 8877776555554433333333332111000 00000 00000 0000000000000000000
Q ss_pred CC-cccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeE
Q 001396 723 PS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 801 (1086)
Q Consensus 723 ~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 801 (1086)
+. .......+|. +....++.+. ...|+-..+... ... -..... ..-..+..
T Consensus 293 ~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~~ 344 (628)
T 4a0p_A 293 AHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVRA 344 (628)
T ss_dssp TTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEEE
T ss_pred CCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCceE
Confidence 00 0000011111 1122222222 223332221110 000 001111 12345778
Q ss_pred EEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 802 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 802 l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
++|.+.+..|..+. .+.|..++.........+.. ....+..+|+...++++..+-+..+.|.+.++. |+..
T Consensus 345 ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~ 423 (628)
T 4a0p_A 345 IDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSV 423 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEE
T ss_pred EEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeE
Confidence 99999877777776 47788888764433233322 234678999998445566666677899999987 4444
Q ss_pred EEe-ccccCCeEEEEEeC-CCCEEEEEeCCC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-
Q 001396 874 SKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 948 (1086)
Q Consensus 874 ~~l-~~h~~~v~~l~~sp-dg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~- 948 (1086)
..+ ........+|++.| .|.++.+-.... .|...+++...... .+. ... .....+++++++..|..+
T Consensus 424 ~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 424 GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEEEeCCCCEEEEEe
Confidence 443 33456789999999 555555533222 56666666533211 111 111 246899999998888775
Q ss_pred -eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 949 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 949 -~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
..+.|..+++. |.....+.........+++... +..+.+=.....|...|..+|+....+.
T Consensus 496 ~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 496 SDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 44789999985 4444444433344567777655 4455555556778888888776554443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-10 Score=124.22 Aligned_cols=244 Identities=9% Similarity=0.062 Sum_probs=163.2
Q ss_pred ceEEEEEecCCceEEE-------eeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCC-CCCCCCCeeE
Q 001396 730 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC 801 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~v~~ 801 (1086)
...+++|+++|..+++ ...++.|.+|+...... . ..... ..++...+..
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~----------------------~-~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK----------------------T-VICKPEVNGYGGIPAG 75 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE----------------------E-EEECCEETTEECCEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE----------------------E-EEEecccCCCCCCCce
Confidence 4578899999987777 56677888876543221 1 00000 0013356889
Q ss_pred EEeecC-CCEEEEEeCCeEEEEEccCceEEEE-EcC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001396 802 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 860 (1086)
Q Consensus 802 l~~s~d-g~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 860 (1086)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999998 665433 221 123578999999 78888776654 5
Q ss_pred eEEEEEcCCceeEEEeccccCCeEEEEEe----CCCCEEE-EEeCCCcEEEEECC-CCceeeeeeeeccCCCccCCCCce
Q 001396 861 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 861 ~v~iwd~~~~~~~~~l~~h~~~v~~l~~s----pdg~~l~-s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.|..|+.. ++.... ..+......++|+ ||++.|. +...++.|.+|+++ .+.......+....++.. ..+.
T Consensus 154 ~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777766 554332 3344557889999 9997654 44567899999986 443322223333322210 1367
Q ss_pred EEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEE-EEECCCcEEEEEcCC
Q 001396 935 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1003 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-s~~~Dg~v~vWd~~~ 1003 (1086)
.++++++|++.++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 6789999999877766543 34457899999999999555 444567899999875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-10 Score=139.07 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=165.5
Q ss_pred cCCCCceEeeecCCCceEEEEEec----cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+|...+..++|||||++++.+.+. ..+|++||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 455678899999999975444333 35699999999986542 1 1 11113568999 9
Q ss_pred CCEEEEEeCCC-------------EEEEEEecCCCcccc-ceEecc-ccccEeEEEecCCCCcEEEEEEe---CCCcEEE
Q 001396 402 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 463 (1086)
Q Consensus 402 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~v~~s~d~~~l~l~s~~---~d~~i~i 463 (1086)
|+.|+.++.+. .|++|++.++..... ...... |...+..+.|+|||+.+ +++.+ .++.|++
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 499999987653211 111223 44567889999999963 33333 2358999
Q ss_pred EeCCCCc-eeEEeecCCcceEEEeecccCCccEEEEEEcC---CeEEEEEcCCCce--eEEecCCCCceEEEEEecCCCE
Q 001396 464 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 537 (1086)
Q Consensus 464 wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~ 537 (1086)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+|+.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666655554 3322 33444444443 6799999987654 233444444444 89999999
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC----CcEEEEEcCCCeeE
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 607 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 607 (1086)
|+..... ++...|++||+.++. .+.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877652 345689999988554 34443222 2467777888888877765444 78999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-10 Score=120.40 Aligned_cols=231 Identities=12% Similarity=0.092 Sum_probs=156.1
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+..-..+..|+|++..++++...++.|..||..+++.... .....+.+++++|+|+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~ 68 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYV 68 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEE
Confidence 33345668899997767888888889999999988764311 134679999999999965
Q ss_pred EEEeCCCEEEEEEecCCCccccceEecc--ccccEeEEEecCCCCcEEEEEEeC---------CCcEEEEeCCC-CceeE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVT-GSRTY 473 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l~l~s~~~---------d~~i~iwd~~~-~~~~~ 473 (1086)
++ . ++.|.+||.++++... ...... ....+.+++++|+|+ ++++... .....+|.+.. ++. .
T Consensus 69 v~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 69 AT-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp EE-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred EE-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 54 3 4579999998875322 111111 224588999999998 4554322 12334554443 433 3
Q ss_pred EeecCCcceEEEeecccCCccEE-EEEEcCCeEEEEEcC--CCcee-----EEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
.+..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-- 218 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-- 218 (297)
T ss_dssp EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence 3333444567888854 66555 556678999999974 33221 122223356789999999987776643
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEEC
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 592 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 592 (1086)
.+.|..||..+++.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 4569999999999988888765 679999998 88888877654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-10 Score=122.19 Aligned_cols=237 Identities=12% Similarity=0.041 Sum_probs=160.7
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+..|..+........|+|+|++|++++..++.|..|+. +++.. . +..+...+..+++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~~ 93 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNAV 93 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceeeE
Confidence 3445555555678899999999988889888999999998 45422 1 2234567899999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccc-cccEeEEEecCCCCcEEEEE----EeC-------------CCc
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DKT 460 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s----~~~-------------d~~ 460 (1086)
+++|+++++...++.|.+|+.+ ++.........+. ...+.++++.++|+ ++++ |.. .+.
T Consensus 94 d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~ 170 (305)
T 3dr2_A 94 DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHS 170 (305)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCe
Confidence 9999977766666789999986 4421111111111 23577899999998 6665 321 256
Q ss_pred EEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCce---eEEecCCCCceEEEEE
Q 001396 461 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMAY 531 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~~ 531 (1086)
|..||..+++..... .......++|+ +++..|+.+... +.|.+|++..... .............+++
T Consensus 171 v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 171 VYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV 246 (305)
T ss_dssp EEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE
T ss_pred EEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE
Confidence 888887777755433 33456778884 466777776655 7899999875431 1111222334567899
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 594 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 594 (1086)
+++|++.++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++
T Consensus 247 d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 247 DRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp CTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE
T ss_pred CCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe
Confidence 9999955443 2 2 3999998 567777776543 478899999999998888764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-11 Score=131.17 Aligned_cols=273 Identities=11% Similarity=0.017 Sum_probs=176.0
Q ss_pred CCceEeeecCCCceEEEEEec--cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 406 (1086)
..+..++++|+|+ ++++... ++.++||.+.+|+.. .+.-|.. ...+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 5666542 343666666555422 2211110 1234667899999999998766
Q ss_pred EEeC-----CCEEEEEEecCCCccccceEec----cccccEeEEEecCCCCcEEEEEEe---CCCcEEEEeCCCCceeEE
Q 001396 407 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 407 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~v~~s~d~~~l~l~s~~---~d~~i~iwd~~~~~~~~~ 474 (1086)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988754422 221 22345789999987653 456655 688999999999988777
Q ss_pred eecCCcceE-EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 475 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 475 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
+.+|..... ...+ ..++..+.+.+.++.++.|. ..+..++|+|||+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765432211 0222 22556677777888876663 135789999999988887642 235666
Q ss_pred EeCC---CCe-----eee--EEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 554 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 554 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++.. .+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 6532 111 000 111222 35667899999988888888999999998667654433322 223467899
Q ss_pred EecCCCEEEEEECCCcE
Q 001396 624 FNKNGTLLAVIANENRI 640 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i 640 (1086)
|.+++.++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998877776654443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-10 Score=118.17 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=149.3
Q ss_pred ceEEEEEecCCceE-EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 730 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
-..+..|++++..+ ++...++.|..|+.... . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 34578888865544 44445677777765432 2 11111 34568899999999
Q ss_pred CEEEEEeCCeEEEEEccCceEEEEEcC----CCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-ceeEE
Q 001396 809 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 874 (1086)
Q Consensus 809 ~~l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~ 874 (1086)
+++++ .++.|.+||..+++....... ....++.++++| +|+++++...+ ..-.||.+.. ++..
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~- 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK- 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE-
Confidence 95554 577899999988776443322 123578999999 78877754321 2334555443 3332
Q ss_pred EeccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEEC--CCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eC
Q 001396 875 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 950 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 950 (1086)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.......+....... +....++++++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 2333445578899999998764 5556788999998 455433333333322211 246789999999887775 56
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEEEC
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 992 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~~~ 992 (1086)
+.|.+||..+|+.+..+. .+...+++++|+ ||++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 789999999898877643 345689999999 88887766554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-10 Score=122.76 Aligned_cols=174 Identities=9% Similarity=0.065 Sum_probs=135.1
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEEccCce-----------EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 797 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
..+..+++++...++++++...+.+|++.+.+ ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999998888889976543 11222 2455 999999 57788888 78999999
Q ss_pred EcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 866 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
|+.+.........|..++.++.+.+.. +++++.||.|.+||+..+.... + . ..|++++|||+| +.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence 998876666677788889888887653 8889999999999999765321 1 1 259999999999 44
Q ss_pred EEEeCCeEEEEEcCCccc--eeccc-----c---CCccCEEEEEEeCCCCEEEEEE
Q 001396 946 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 946 ~~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
+...||.+++|+...+++ ...+. . +|...|.++.|.+++.++++=+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 447899999999887774 33321 1 4789999999999999988643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=122.62 Aligned_cols=249 Identities=10% Similarity=-0.005 Sum_probs=163.9
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 873 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 873 (1086)
.....++++++++++++.. ++.|++||..++.......... ... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3567899999999766665 4889999999887766555432 233 99999 888888888766 8999998766544
Q ss_pred EEe----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE--
Q 001396 874 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-- 947 (1086)
Q Consensus 874 ~~l----~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-- 947 (1086)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+.... .+...++|+|++..|.+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~~-~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGT-NPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCCC-SSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCCC-CccccEEEeCCCCEEEEEe
Confidence 343 224566888999995555555777889999999876532211110 1111110 01138999996555544
Q ss_pred EeCCeEEEEEcCCccceeccccCC---------------ccCEEEEEEeCCCCEEEEEE-CCCcEEEEEcCCCceeeeec
Q 001396 948 VHETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 948 ~~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~s~~-~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
...+.|+.|+.... +.. ..++ -.....++|+++|.++++-. .+++|+.|++.+|.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCC--EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35678999987643 211 1111 23588999999999888777 78899999988887543322
Q ss_pred cccccC--CC--CccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1012 STAYLR--PT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1012 ~~~~~~--~~--~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
...... .+ ....-..|..++++| ++.++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 100000 00 001124578999999 5777777777888888765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=139.61 Aligned_cols=245 Identities=10% Similarity=0.069 Sum_probs=160.8
Q ss_pred CCCccEEEEEECCCCCEEEEEe-----CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC---
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 459 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--- 459 (1086)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 4566888999999999999653 235799999999875431 11 11123678999 999 566665553
Q ss_pred ----------cEEEEeCCCCce--eEEe--ec-CCcceEEEeecccCCccEEEEEEc----CCeEEEEEcCCCc-eeEEe
Q 001396 460 ----------TIKVWDAVTGSR--TYSF--EG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 519 (1086)
Q Consensus 460 ----------~i~iwd~~~~~~--~~~~--~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~-~~~~~ 519 (1086)
.|++|++.++.. ...+ .. |...+.++.+ ++||++|+.... ++.|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987753 2222 33 3445667777 557777755433 2589999998764 33444
Q ss_pred cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEEEECCC---
Q 001396 520 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 594 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--- 594 (1086)
..+....... ++++|..++..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887776664333367899999988754 34555554 3343 8899999888766443
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC----CcEEEEECCCCC
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 649 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 649 (1086)
.|++|++..+ ....+.... ...+..+.++++++.++....+ +++..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 444554332 1234556677888777666554 789999987764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-10 Score=124.90 Aligned_cols=195 Identities=11% Similarity=0.004 Sum_probs=128.0
Q ss_pred EEEeecCCCEEEEEe---CCeEEE--EEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----c
Q 001396 801 CFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----S 870 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~ 870 (1086)
.++++|||++++++. ++.+.+ +|..+ +..+.... . ..+.|++.+.+++.+.||.+.+.++.+ +
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 578888888888875 256888 88877 34443211 1 223453556666777888888889887 4
Q ss_pred eeEEE----eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecc------CCCccCCCCceEEEEec
Q 001396 871 EVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 871 ~~~~~----l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~ 940 (1086)
+.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+|
T Consensus 201 ~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s~ 273 (368)
T 1mda_H 201 IVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKLK 273 (368)
T ss_dssp ECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEET
T ss_pred eEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEcC
Confidence 43321 11122333 3 677777766667 8999999975332111111111 01000 1223378999
Q ss_pred CCCEEEEE-e-C--------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCC-EEEEEE-CCCcEEEEEcCCCceee
Q 001396 941 DQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 941 dg~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s~~-~Dg~v~vWd~~~~~~~~ 1008 (1086)
||+++.++ . . +.+.++|+.+++.+..+..+ .....++|++||+ .+++.. .+++|.|+|+.+++.+.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99998874 3 2 36779999999988876554 3688999999998 456666 59999999999999998
Q ss_pred eec
Q 001396 1009 RIL 1011 (1086)
Q Consensus 1009 ~~~ 1011 (1086)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 886
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=125.78 Aligned_cols=272 Identities=10% Similarity=-0.037 Sum_probs=174.8
Q ss_pred eEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe--------
Q 001396 342 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------- 409 (1086)
Q Consensus 342 ~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 409 (1086)
++.++...++ +|.+.|..+++.+.+... |. .+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v------------------G~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------------------AF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------CT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeC------------------CC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555455 788999999998875321 22 34 799999999999986
Q ss_pred --CCCEEEEEEecCCCccccceEecc-c----cccEeEEEecCCCCcEEEEEEe--CCCcEEE--EeCCCCceeEEeecC
Q 001396 410 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH 478 (1086)
Q Consensus 410 --~d~~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~v~~s~d~~~l~l~s~~--~d~~i~i--wd~~~~~~~~~~~~h 478 (1086)
.++.|.+||+.+++.+..+. +.+ . ......++|+|||++ ++.+. .+..+.+ +|+.+ +.++...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998766432 210 0 123568999999995 44443 3567888 99877 4455321
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCC-----CceeEE----ecCCCCceEEEEEecCCCEEEEEeeCCCCce
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVD----YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 549 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~----~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 549 (1086)
. . ..+.+... ..+++.+.||.+.+.|+++ ++.... +.....+. . ++++..++..+. +
T Consensus 166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 1 1 11223322 3556677888888888876 222110 11112232 3 677776666543 3
Q ss_pred eEEEEeCCCCe--eeeEEecc-------cccCCceEEEEEecCCCEEEEEEC---------CCcEEEEEcCCCeeEEEEc
Q 001396 550 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 550 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 611 (1086)
.+.+.|..++. .+..+... .........+.++|++++++.+.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 58888886532 22222110 000011222689999999887543 2356699999999988887
Q ss_pred CCCCCCCCceEEEecCCC-EEEEEE-CCCcEEEEECCCCCeeeecccc
Q 001396 612 AGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 612 ~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
... ....++|+|||+ ++++.. .++.|.++|+.+.+.+..+...
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 553 368999999998 455555 5899999999999888877643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-09 Score=114.74 Aligned_cols=225 Identities=13% Similarity=0.027 Sum_probs=150.8
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
-....+|+|+++.+++++..++.|..||..+++... +. ....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 456789999877788888888999999998875431 11 23579999999999887765
Q ss_pred CCCEEEEEEecCCCccccceEec-c-ccccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCCcc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 481 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 481 (1086)
.++ |.+||..+++... ..... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 444 9999998876322 11111 1 124689999999998 4554432 24566666 45433 33333345
Q ss_pred eEEEeecccCCccEEE-EEEcCCeEEEEEcC--CC-ce-----eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEE
Q 001396 482 VYSLCPHAKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 552 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 552 (1086)
...++|+ ++++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6778885 4666554 44567899999986 43 21 1122223456788999999987776542 45699
Q ss_pred EEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEECC
Q 001396 553 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 593 (1086)
Q Consensus 553 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 593 (1086)
+||. +++.+..+..+. ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 577777776554 679999998 888877665543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-10 Score=125.14 Aligned_cols=273 Identities=7% Similarity=-0.001 Sum_probs=176.6
Q ss_pred cceEEEEEecCCceEEEeec--cceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec
Q 001396 729 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 806 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~ 806 (1086)
..+..++++++|+.+++... ++.++||.+... +. .-|- +.. ....++-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GL------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EE------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ce------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46788999999998777532 343666665411 10 0000 000 00112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEccCceEEEEEcCC------CCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCce
Q 001396 807 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 871 (1086)
Q Consensus 807 dg~~l~~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~ 871 (1086)
+|+++++.. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998766553 368999999999977766432 235689999984455555555 57899999999998
Q ss_pred eEEEeccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEe-
Q 001396 872 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 949 (1086)
Q Consensus 872 ~~~~l~~h~~~v~-~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 949 (1086)
....+.+|..... ...++++|..+.+.+.++.++.|.. .+..++|||||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 8777776533211 1456668888888888888766531 256799999999888753
Q ss_pred C-CeEEEEEcCC---c-----cceecc-ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCC
Q 001396 950 E-THLAIYEAEE---L-----TCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1019 (1086)
Q Consensus 950 d-~~i~vwd~~~---~-----~~~~~~-~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1019 (1086)
. +.+..++... + +....+ ..++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 3 3455554321 1 001100 11233456678999999999998889999999986676432222 11
Q ss_pred CccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 1020 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 1020 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
...++.+++|.| ++.++++....+.+.+|.
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 124577899998 678888877666554443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-09 Score=125.13 Aligned_cols=332 Identities=10% Similarity=0.051 Sum_probs=192.1
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCc-----------eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..++.++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 36777788899999999999988877654321 112333 4556666654 678999999999998
Q ss_pred eEEecc-cccC-CceEE-EEEecCCCEEEEEEC------CCcEEEEEcCCCeeEEEEcCCCCC-----------------
Q 001396 563 RTYQGL-QLQH-NSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL----------------- 616 (1086)
Q Consensus 563 ~~~~~~-~~~~-~~v~~-~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 616 (1086)
-.+... .... ..+.+ ... .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888764 1000 11111 111 1345666543 799999999999999887643221
Q ss_pred -------------CCCceEEEecCCCEEEEEECCC-------------------cEEEEECCCCCeeeeccccccceeee
Q 001396 617 -------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKL 664 (1086)
Q Consensus 617 -------------~~v~~v~~s~~~~~l~~~~~dg-------------------~i~iw~~~~~~~~~~~~~~~~~v~~~ 664 (1086)
.....++++|++.++++++.++ .|..+|..+++.....+.....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d---- 305 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD---- 305 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC----
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc----
Confidence 0113578899988998887764 3555555555544433211100
Q ss_pred EEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCC---c
Q 001396 665 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q 741 (1086)
Q Consensus 665 ~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~ 741 (1086)
.|+.. ......-+....+| .
T Consensus 306 -----------------------------------------~wd~~----------------~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 306 -----------------------------------------NWDYT----------------STQPMILADIKIAGKPRK 328 (677)
T ss_dssp -----------------------------------------CSCCC----------------CCSCCEEEEEEETTEEEE
T ss_pred -----------------------------------------ccccc----------------cCCCcEEEecccCCcEee
Confidence 11110 00011112222355 4
Q ss_pred eEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceee----------ecCCCCCCCCCeeEEEeecCCCEE
Q 001396 742 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL 811 (1086)
Q Consensus 742 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~l 811 (1086)
.++.++.+|.+.++|...++....-......-..-+| .+|..... ...+...-...-..++++|++.++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 5666667777777776554331110000000000011 12221110 001100000111367889988887
Q ss_pred EEEeC--------------------------------------------CeEEEEEccCceEEEEEcCCCCCeEEEEEcC
Q 001396 812 FSASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNP 847 (1086)
Q Consensus 812 ~~~~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 847 (1086)
++... |.|..||+.+++.+..+.. ..++....++.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence 76421 6799999999999888763 33444455666
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeEEEecccc-CCeEEEEEeCCCCEEEE
Q 001396 848 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 897 (1086)
Q Consensus 848 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s 897 (1086)
++.++++++.||.+++||..+|+.+..+.... ....-+.++++|+.++.
T Consensus 487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 66688889999999999999999998887433 22344667788875554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-08 Score=110.03 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=100.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCC---------cceE-EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 520 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~---------~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 520 (1086)
.++.++.++.|..+|.++|+.+....... ..+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 57777889999999999999987765422 2222 2222 33478889999999999999998887665
Q ss_pred CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC--CceEEEEEecCCCEEEEEECCCcEEE
Q 001396 521 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 521 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i 598 (1086)
........... .+ ..++.++. ++.|+.+|..+|+.+..+....... ......... +..++.++.++.+..
T Consensus 131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 54332222222 23 45555543 6689999999999887766533000 000112222 457888888999999
Q ss_pred EEcCCCeeEEEEcCC
Q 001396 599 WDMNKVQLLTTIDAG 613 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~ 613 (1086)
+|..+|+.+......
T Consensus 203 ~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 203 VLMEQGQMIWQQRIS 217 (376)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCcEEEEEecc
Confidence 999999988776543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.8e-06 Score=95.62 Aligned_cols=521 Identities=8% Similarity=-0.023 Sum_probs=271.3
Q ss_pred CCCEEEEEEecCCC-ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce-eEEeecCCcceEEEee
Q 001396 410 SKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCP 487 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~ 487 (1086)
....|+..++.... ... .+.........++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34558888887542 111 12233445788999997774 455555678899999876532 2233333356788888
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 543 34466666778999999988765544444444567789999986666655421 135677777654333222222
Q ss_pred ccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
. ....+.+++++++..|+.+. ..+.|...|+............ ......+++..+ .++++-...+.|...|..
T Consensus 169 ~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 169 E---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp S---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred C---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2 25678999999877777765 5678899988765443333211 223467787655 344444456789999988
Q ss_pred CCCeeeeccccccceeeeEEc-cCCCcee-----ccccCC-eeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 647 ESNSVDAAGVLSDNLRKLSVN-PISTVTG-----AGIANG-SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 647 ~~~~~~~~~~~~~~v~~~~~~-p~~~~~~-----~~~~~~-~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
+++....+.........+++. |.....+ ...+.+ .+.+. +|..........+|..
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~--------------- 304 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVK--------------- 304 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCC---------------
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhe---------------
Confidence 776655554333223333332 1100000 000000 00000 0000000000000000
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
+. ....+|. +..+.++..+..+.|+..++..... . .....+. .-..+
T Consensus 305 --l~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~ 351 (619)
T 3s94_A 305 --LL----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHA 351 (619)
T ss_dssp --BC----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSE
T ss_pred --ec----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCcc
Confidence 00 0000000 0011122223333444444332110 0 0111111 23356
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001396 800 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
..++|.+.+..|..++ .+.|..+++........+...-.....+|+...++++.++-+..+.|.+.++........+.
T Consensus 352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~ 431 (619)
T 3s94_A 352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS 431 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEE
Confidence 7899999776666665 57899999875443333433335667899986456566666667899999987543322223
Q ss_pred cccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeE
Q 001396 878 GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL 953 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i 953 (1086)
..-....+|++.|...+|..+.. ...|...+++...... .+ .... .....+++++++..|..+ ..+.|
T Consensus 432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I 503 (619)
T 3s94_A 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKI 503 (619)
T ss_dssp TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EE---eCCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence 34456889999997445544432 3567777776533211 11 1111 256789999988877765 45678
Q ss_pred EEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 954 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
..+++.... ...+..+......+++...+ ...++-...+.|..-+..+|
T Consensus 504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 888886332 33222222222334555433 33333334456777777776
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-10 Score=123.95 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=133.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------cccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEE
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 462 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~ 462 (1086)
..+..+++++...++++|+.++ +++|+++.... .... ....+.. |++++| |++ +|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence 3789999999999999999986 67799765431 1111 1224666 999999 888 67777 789999
Q ss_pred EEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEe
Q 001396 463 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 463 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+||+.+.........|...+.++.+.+. .+++++.||.|.+||+....... ....|++++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9999887776777778888888776432 28889999999999999776543 33589999999999 45555
Q ss_pred eCCCCceeEEEEeCCCCee--eeEEec------ccccCCceEEEEEecCCCEEEE
Q 001396 543 TSKEGESFLVEWNESEGAI--KRTYQG------LQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~--~~~~~~------~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
. ++.+++|+...++. .+++.. +..+...|.++.|.+++.++++
T Consensus 180 ~----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 K----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp T----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 4 66799998887775 555521 1113478999999999888776
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-09 Score=112.57 Aligned_cols=225 Identities=9% Similarity=-0.008 Sum_probs=145.8
Q ss_pred eEEEEEecCCceE-EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 731 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 731 i~~l~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
....+|++++..+ ++...++.|..|+.... . ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence 4567899975544 44445677777765432 1 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEccCceEEEEEcCC----CCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEcCCceeEEEeccc
Q 001396 810 YLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 879 (1086)
Q Consensus 810 ~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h 879 (1086)
++++. ++.|.+||..+++........ ...+..++++| +|+++++... .+.|..++ +++... +..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC
Confidence 87765 455999999888764433211 23588999999 7887765442 24566666 455433 3334
Q ss_pred cCCeEEEEEeCCCCEEEEE-eCCCcEEEEECC--CC-ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEE
Q 001396 880 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 954 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~-s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~ 954 (1086)
......++|+|||+.|+.+ +.++.|.+|+++ ++ .......+....... .....++++++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4457789999999876554 557889999986 54 322212222222111 235789999999987775 467899
Q ss_pred EEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEEECC
Q 001396 955 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 993 (1086)
Q Consensus 955 vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~~~D 993 (1086)
+|+. +++.+..+ ..+...+++++|+ +|++.|+.++..
T Consensus 255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 56665543 3345679999999 898877655544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-08 Score=110.24 Aligned_cols=276 Identities=10% Similarity=0.028 Sum_probs=173.2
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.++.|..+|..+|+.+.......- . . ........+.+. ...++..+++++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-------~-~--~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEK-------D-G--WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCccc-------c-c--cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 66777789999999999998754332100 0 0 000001222221 12246678888899999999999997
Q ss_pred ccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce-----EEEeecccCCccEEEE
Q 001396 424 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 498 (1086)
Q Consensus 424 ~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~l~s 498 (1086)
.+-. .............. ++ .++.++.++.|..+|..+|+.+.......... ..... .+..++.
T Consensus 125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 6532 22221111122222 33 47778889999999999999988776433221 11122 1246888
Q ss_pred EEcCCeEEEEEcCCCceeEEecCCCCc----------eEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 499 ISVDGKIKAWLYDSLGARVDYDAPGLG----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 499 ~s~dg~i~vwd~~~~~~~~~~~~~~~~----------i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
++.++.+..+|..+++........... +...... .+..++.++. ++.++.+|..+|+.+.....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAY----NGNLTALDLRSGQIMWKREL- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECT----TSCEEEEETTTCCEEEEECC-
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEec----CcEEEEEECCCCcEEeeccC-
Confidence 888999999999998887765433210 1010011 2455555543 55799999999988766543
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.....+.. ++..++.++.++.|..+|..+++.+........ ......... +..+++++.+|.+.++|..++
T Consensus 268 ----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 268 ----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVLY--NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp ----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred ----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEEE--CCEEEEEeCCCeEEEEECCCC
Confidence 22334433 467889999999999999999998877752211 112233332 568889999999999999999
Q ss_pred Ceeeeccc
Q 001396 649 NSVDAAGV 656 (1086)
Q Consensus 649 ~~~~~~~~ 656 (1086)
+.+.....
T Consensus 339 ~~~~~~~~ 346 (376)
T 3q7m_A 339 RFVAQQKV 346 (376)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 87765543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-09 Score=113.25 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=152.6
Q ss_pred CCCccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 388 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3445677899999999 5566667889999988 443 22 3445667789999999998 5666556678999997
Q ss_pred CCCceeEEeecC----CcceEEEeecccCCccEEEE----EEc-------------CCeEEEEEcCCCceeEEecCCCCc
Q 001396 467 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG 525 (1086)
Q Consensus 467 ~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 525 (1086)
. |+........ ...+..+++ +++|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred C-CCEEEEEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 5 6543222111 123556777 457777776 321 245677776555544333 3345
Q ss_pred eEEEEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeee--eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 526 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
...++|+||++.|+.+.... .+...|++|++..+... ..+... .......++++++|+ |.+++.+ .|.+|+.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS 265 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence 67899999999887765321 01257999998765421 112111 124456788999998 4444444 4999998
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 602 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 602 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
+++.+..+..+. .+.+++|+++++.|++++.++.
T Consensus 266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776553 3789999999999998887643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-09 Score=123.83 Aligned_cols=331 Identities=8% Similarity=0.048 Sum_probs=188.6
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCc----------e-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
..+++++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 47778888899999999999988877654321 0 11222 3556666654 678999999999998
Q ss_pred eEEecc-cc-cCCceEE-EEEecCCCEEEEEE------CCCcEEEEEcCCCeeEEEEcCCCC------------------
Q 001396 563 RTYQGL-QL-QHNSVSV-VHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTIDAGGG------------------ 615 (1086)
Q Consensus 563 ~~~~~~-~~-~~~~v~~-~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~~~~------------------ 615 (1086)
-.+... .. ....+.+ ... .++ .+++++ .+|.|+.||..+|+.+..+.....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 777653 10 0011111 111 133 455543 378999999999999887753110
Q ss_pred -----------CCCCceEEEecCCCEEEEEECCCc-------------------EEEEECCCCCeeeeccccccceeeeE
Q 001396 616 -----------LPENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLS 665 (1086)
Q Consensus 616 -----------~~~v~~v~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~v~~~~ 665 (1086)
......++++|++.++++++.++. |..+|..+++.....+.....
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d----- 297 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGD----- 297 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTC-----
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcc-----
Confidence 011136789998899999888764 666676666655544321110
Q ss_pred EccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCc---e
Q 001396 666 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---A 742 (1086)
Q Consensus 666 ~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~---~ 742 (1086)
.|+.. ....+.-.....+|+ .
T Consensus 298 ----------------------------------------~wd~~----------------~~~~~~l~d~~~~G~~~~~ 321 (689)
T 1yiq_A 298 ----------------------------------------AWDYT----------------ATQHMILAELPIDGKPRKV 321 (689)
T ss_dssp ----------------------------------------CSCCC----------------CCSCEEEEEEEETTEEEEE
T ss_pred ----------------------------------------ccccc----------------CCCCcEEEeeccCCcEEEE
Confidence 01110 000111111112343 4
Q ss_pred EEEeeccceeEEeeccCCccccCcccccccCCceecCC---------------CCCceeeecCCCCCCCCCeeEEEeecC
Q 001396 743 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR---------------HGPQFMVNDTTDSNSQEAVPCFALSKN 807 (1086)
Q Consensus 743 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~~~v~~l~~s~d 807 (1086)
++.++.+|.++++|...++...........-..-.+.. ++...... +...-...-..++++|+
T Consensus 322 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~--p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 322 LMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT--PAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES--SCTTCSSCSSCCEEETT
T ss_pred EEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC--CCcccccCCCcceECCC
Confidence 56666667777766554433110000000000000000 11111110 00000111234788888
Q ss_pred CCEEEEEe----------------------------------------------CCeEEEEEccCceEEEEEcCCCCCeE
Q 001396 808 DAYLFSAS----------------------------------------------GGVISLYIVMTFKTILTIMPPSPTAT 841 (1086)
Q Consensus 808 g~~l~~~~----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~ 841 (1086)
..++++.. +|.|..||+.+++.+..+..+.. +.
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~ 478 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FN 478 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-cc
Confidence 77777641 26799999999999988765432 33
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCCCEEEE
Q 001396 842 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 897 (1086)
Q Consensus 842 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~s 897 (1086)
.-.++. .+.++++|+.||.++.||..+|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 479 ~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 479 GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 335555 5668999999999999999999999888754332 244777888875443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-09 Score=124.70 Aligned_cols=291 Identities=12% Similarity=0.053 Sum_probs=182.8
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccE-EEEEECCCCCEEEEEeCCCEEEEEEecC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 421 (1086)
+.+++.++.|.-+|..+|+.+-......- ... ..... ..+ ..+++ ++..|++++.|+.|+.+|..+
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence 66677789999999999998765332100 000 00000 000 11122 466888888999999999999
Q ss_pred CCccccceEeccccccEeEEEecC---CCCcEEEEEEe-----CCCcEEEEeCCCCceeEEeecCC-c------------
Q 001396 422 GSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------ 480 (1086)
Q Consensus 422 ~~~~~~~~~~~~h~~~v~~v~~s~---d~~~l~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~-~------------ 480 (1086)
|+.+-.... ..+......+..+| ++. +++..+ .++.|+.||.++|+.+..+.... .
T Consensus 141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 986543211 10111111111112 444 333322 37899999999999988775210 0
Q ss_pred ------------------ceEEEeecccCCccEEEEEEcCCe-------------------EEEEEcCCCceeEEecCCC
Q 001396 481 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG 523 (1086)
Q Consensus 481 ------------------~v~~~~~~~~~~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~~~ 523 (1086)
....+++ +++..+++.++.++. |..+|.++++.+..+....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~ 295 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP 295 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence 0013344 344568888887764 9999999999988765432
Q ss_pred C---------ceEEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc---------------------
Q 001396 524 L---------GCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--------------------- 570 (1086)
Q Consensus 524 ~---------~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 570 (1086)
. .........+|+ .++.+.. ++.++++|..+|+.+........
T Consensus 296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp TCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred cccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1 122222333665 5655543 78899999999998744321110
Q ss_pred ----c-----------CCceEEEEEecCCCEEEEEEC-------------------------------------------
Q 001396 571 ----Q-----------HNSVSVVHFDTAKDQILAAGD------------------------------------------- 592 (1086)
Q Consensus 571 ----~-----------~~~v~~~~~~~~~~~l~~~s~------------------------------------------- 592 (1086)
. ...-..++++|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0 001123688998888877532
Q ss_pred --CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccc
Q 001396 593 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 658 (1086)
Q Consensus 593 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 658 (1086)
+|.|+.||+.+++.+.....+.. .....+...+.++++++.||.++.||.++++.+..++...
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 37799999999999988876533 3444667778899999999999999999999988776543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-08 Score=120.30 Aligned_cols=288 Identities=11% Similarity=0.059 Sum_probs=184.5
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 423 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 423 (1086)
+.+++.++.|.-+|..+|+.+-......-. .... ....+ .....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~-----~~~~--~~~~~-~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDR-----STGF--KGCCD-VVNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCG-----GGGG--GSSSC-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCc-----cccc--ccccc-CCCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 566677899999999999988653321000 0000 00000 00011222 46788888899999999999998
Q ss_pred ccccceEeccc-c----ccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCCcce----------
Q 001396 424 DARQQLEIDAH-V----GNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAPV---------- 482 (1086)
Q Consensus 424 ~~~~~~~~~~h-~----~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v---------- 482 (1086)
.+-. +..+ . ..+.+.-...++. ++.++. ++.|+.+|.++|+.+.++.......
T Consensus 150 ~~W~---~~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 150 EVWH---QNTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp EEEE---EETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EEee---ecCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 6543 2222 1 1121111111333 444432 7899999999999998775432110
Q ss_pred ----------------------EEEeecccCCccEEEEEEcCC-------------------eEEEEEcCCCceeEEecC
Q 001396 483 ----------------------YSLCPHAKENIHFIFSISVDG-------------------KIKAWLYDSLGARVDYDA 521 (1086)
Q Consensus 483 ----------------------~~~~~~~~~~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~ 521 (1086)
..+++ ++++.+++.++.++ .|..+|.++++.+..+..
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 12344 33456777777664 599999999998877654
Q ss_pred CCC---------ceEEEEEecCC---CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc--------CCce------
Q 001396 522 PGL---------GCTRMAYSANG---RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--------HNSV------ 575 (1086)
Q Consensus 522 ~~~---------~i~~~~~s~d~---~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--------~~~v------ 575 (1086)
... ....+....+| ..++.+.. ++.++++|..+|+.+..+...... ...+
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK----NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEECC----CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 221 12223344577 56666653 778999999999988766532100 0001
Q ss_pred ------------------EEEEEecCCCEEEEEEC-------------------------------------------CC
Q 001396 576 ------------------SVVHFDTAKDQILAAGD-------------------------------------------DH 594 (1086)
Q Consensus 576 ------------------~~~~~~~~~~~l~~~s~-------------------------------------------dg 594 (1086)
..++++|++..+++... .|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 15688999888887543 27
Q ss_pred cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 595 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 595 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.|..||+.+++.+........ +....+..++.++++++.||.+++||..+++.+..+..
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~~---~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEeCCCCcEEeecCCCCC---CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 899999999999988865432 45566777888999999999999999999988877764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=110.15 Aligned_cols=238 Identities=12% Similarity=0.074 Sum_probs=155.4
Q ss_pred eeec--CCCceEEEEEeccCcEEEEecCCC----ceeeeeeeeeeeccccceeeeeeeecC-CCccEEEEEECCCCCEEE
Q 001396 334 MDFH--PVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 334 ~~~s--pdg~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~la 406 (1086)
..++ +++++|++.|..+++|.|+|+.+. +..+. .+. ..+... .......+..+||| .++
T Consensus 87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~-----ie~--------~~~~~~~g~s~Ph~~~~~pdG-i~V 152 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV-----IEP--------EEVKKVSGYSRLHTVHCGPDA-IYI 152 (462)
T ss_dssp TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE-----ECH--------HHHHHHHCEEEEEEEEECSSC-EEE
T ss_pred cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee-----ech--------hhcccccCCCcccceeECCCe-EEE
Confidence 3457 899999999999999999999755 22221 100 000000 11245567889999 666
Q ss_pred EEeCC------CEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEe-------------------CCCc
Q 001396 407 VAYSK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKT 460 (1086)
Q Consensus 407 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~-------------------~d~~ 460 (1086)
++..+ +.|.+.|.++++.+.... ..... .--..+.|+|+++ .+++.. .+.+
T Consensus 153 s~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 153 SALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EcCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCE
Confidence 66554 789999999988666332 11222 2234688999999 677663 3689
Q ss_pred EEEEeCCCCceeEEeecC--CcceEEEeecccCCccEEEEEE------cCCeEEEEEcCCCcee--EE--ecCC------
Q 001396 461 IKVWDAVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP------ 522 (1086)
Q Consensus 461 i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~--~~--~~~~------ 522 (1086)
|.+||+.+++.+.++... ......+.|..+++++++++++ .+++|.+|..+.+.-. .. +...
T Consensus 230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSC
T ss_pred EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccc
Confidence 999999999888887653 1344566665577888877776 4668888766543211 11 1110
Q ss_pred ----------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEecccc-----------cCCceEEE
Q 001396 523 ----------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQL-----------QHNSVSVV 578 (1086)
Q Consensus 523 ----------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~-----------~~~~v~~~ 578 (1086)
......+.+|+||++|+++.. +.+.|.++|+.. .+.+..+..... -......+
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~ 386 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML 386 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence 234678999999999998865 356899999853 344444433210 00135789
Q ss_pred EEecCCCEEEEEE
Q 001396 579 HFDTAKDQILAAG 591 (1086)
Q Consensus 579 ~~~~~~~~l~~~s 591 (1086)
.++|||++|+++.
T Consensus 387 ~lSpDGk~LyVaN 399 (462)
T 2ece_A 387 EISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSSEEEEEC
T ss_pred EEcCCCCEEEEEc
Confidence 9999999999986
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-08 Score=106.59 Aligned_cols=233 Identities=14% Similarity=0.086 Sum_probs=152.4
Q ss_pred Eee--cCCCEEEEEe--CCeEEEEEccCc----eEEEEEc------C-CCCCeEEEEEcCCCCCEEEEEeCC------Ce
Q 001396 803 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST 861 (1086)
Q Consensus 803 ~~s--~dg~~l~~~~--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~ 861 (1086)
.++ +++++|++.+ ++.|.++|+.+. +...++. . ....-..+..+| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 347 8899998887 588999999765 6667663 1 112456788899 77 76666555 78
Q ss_pred EEEEEcCCceeEEEeccccC---CeEEEEEeCCCCEEEEEe-------------------CCCcEEEEECCCCceeeeee
Q 001396 862 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 919 (1086)
Q Consensus 862 v~iwd~~~~~~~~~l~~h~~---~v~~l~~spdg~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~ 919 (1086)
|.++|..+++.+.++..-.+ --+.+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999999873222 234588999999999874 36789999999864322 3
Q ss_pred eeccCCCccCCCCceEEEE--ecCCCEEEEE-------eCCeEEEEEcCCccceecc----cc----C-----------C
Q 001396 920 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW----FP----I-----------S 971 (1086)
Q Consensus 920 ~~~~~~~~~~~~~v~~~~~--s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~----~~----~-----------h 971 (1086)
+....... ....+.| +|+|+++.++ .+++|.+|....|+..... .. + -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2445656 9999998873 3457776665443211000 00 0 0
Q ss_pred ccCEEEEEEeCCCCEEEEEEC-CCcEEEEEcCC---CceeeeeccccccCCCCc----cCcccceEEEECCCCCCEEEEE
Q 001396 972 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1043 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~~-Dg~v~vWd~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~~~ 1043 (1086)
......+.+|+||++|.++.. .+.|.++|+.. .+++..+..........+ .....|..++++| ||+.|+++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 245788999999999887765 57899999863 355555543211000000 0012467899999 78988888
Q ss_pred e
Q 001396 1044 L 1044 (1086)
Q Consensus 1044 ~ 1044 (1086)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-09 Score=114.48 Aligned_cols=302 Identities=11% Similarity=0.048 Sum_probs=176.6
Q ss_pred eEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE
Q 001396 439 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 518 (1086)
Q Consensus 439 ~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 518 (1086)
.+..+..++. +..++.++.|..|| .+|+.+.....+...+.++.. ..++ .++.++.+ |..+|. +++....
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence 3455556665 66677788999999 899887665544445555555 3344 45555544 777875 4443333
Q ss_pred ecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEE
Q 001396 519 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 598 (1086)
Q Consensus 519 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 598 (1086)
+...........+. +..+..++. ++.|+.+|.. ++....+.... ..+.++...+++. ++.++.++.|..
T Consensus 93 ~~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SCC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 33222222233333 444555543 5579999988 77666655433 4456666776665 667778899999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecccc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 678 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~ 678 (1086)
+|.. ++......... ..+.++.+.+++.+.+ ++ +.+..++ .++........
T Consensus 162 ~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~---------------------- 212 (330)
T 3hxj_A 162 INPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA---------------------- 212 (330)
T ss_dssp ECTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC----------------------
T ss_pred ECCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc----------------------
Confidence 9998 77776665432 2356666666665443 33 5566665 33221111100
Q ss_pred CCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeecc
Q 001396 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 758 (1086)
Q Consensus 679 ~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 758 (1086)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCC
Q 001396 759 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 838 (1086)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~ 838 (1086)
....+.++++.++|...+...++.+..+|. +++.+..+.....
T Consensus 213 ------------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 213 ------------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp ------------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred ------------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 011233444455555444444555555553 4444444443333
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 911 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 911 (1086)
.+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+++ .++.+|.+++.....
T Consensus 256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 344455655 55 4556888888999996 677776666555667778887787654 478899998877664
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-09 Score=113.26 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=175.7
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
....+..+|. +..|+.++.|..|| .+|+.+... ..+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667775 56677889999999 888865431 11334567788877776444 4444
Q ss_pred CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccC
Q 001396 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 491 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 491 (1086)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. |+.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 5554332 22222223333443 44 46678888999999988 8887777655555555554 33
Q ss_pred CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc
Q 001396 492 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571 (1086)
Q Consensus 492 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 571 (1086)
++ .++.++.++.|..+|.. ++....+......+.++.+.+++...+.. +.|+.+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 44 47778888999999988 66666666656667777888888866554 2389999 7777666655433
Q ss_pred CCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCee
Q 001396 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 572 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
..+.++...+++ .+..++.++.|..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.|..+|. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 567788888876 5667777888988874 5666666554332 23455666556 5667888888999985 55555
Q ss_pred eecc
Q 001396 652 DAAG 655 (1086)
Q Consensus 652 ~~~~ 655 (1086)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-07 Score=107.35 Aligned_cols=344 Identities=11% Similarity=0.046 Sum_probs=200.0
Q ss_pred EEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE----------cCCeEEEEEcCCCceeEEe
Q 001396 450 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 450 l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~ 519 (1086)
..+.||+..|.++|+-+.+++.++.+......-. .-|-.++....++..+ .+|. . .+
T Consensus 16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~--~~ 82 (595)
T 1fwx_A 16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------R--IH 82 (595)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------S--SC
T ss_pred EEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------e--ec
Confidence 3688999999999999999999988753221000 0000000000011000 0010 0 00
Q ss_pred cCCCCceEEEEE---ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEE-e-cCCCEEEEEE---
Q 001396 520 DAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG--- 591 (1086)
Q Consensus 520 ~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s--- 591 (1086)
......-..+++ .+||++++.+.. .+..|.+.|+.+.+..+.+.-.. ......+++ + |+++++++++
T Consensus 83 ~~gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~ 157 (595)
T 1fwx_A 83 DNGDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDE 157 (595)
T ss_dssp CCCCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSC
T ss_pred ccCCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccc
Confidence 000001122333 248999988653 26689999999999888664332 245788887 5 9999999985
Q ss_pred ---------------CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccc
Q 001396 592 ---------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 592 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
.++.+.+.|..+.+...++...+. ...++++|+|+++++.+.+..- +..+.....
T Consensus 158 ~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~~ 227 (595)
T 1fwx_A 158 TPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMTA 227 (595)
T ss_dssp EESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHTC
T ss_pred cccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhccc
Confidence 345799999999999998876542 4678999999999999876421 100000000
Q ss_pred cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEE
Q 001396 657 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 736 (1086)
Q Consensus 657 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 736 (1086)
.....+.+..... .. .+
T Consensus 228 --~~~d~v~V~~~~~-----------------------~~--------------------------------------~~ 244 (595)
T 1fwx_A 228 --AEMDHIVVFNIAE-----------------------IE--------------------------------------KA 244 (595)
T ss_dssp --CSEEEEEEEEHHH-----------------------HH--------------------------------------HH
T ss_pred --cccceEEEeeccc-----------------------ee--------------------------------------Ee
Confidence 0111111100000 00 00
Q ss_pred ecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCc-eeeecCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001396 737 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 815 (1086)
Q Consensus 737 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~ 815 (1086)
.++|+.... +.|.|.|....+ +.. +.... -.....++.++|||+++++++
T Consensus 245 v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 245 IAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp HHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEEC
T ss_pred ccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEeC
Confidence 111211111 224444332200 111 11111 122455799999999999987
Q ss_pred --CCeEEEEEccCce------------EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------ce
Q 001396 816 --GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SE 871 (1086)
Q Consensus 816 --dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~~ 871 (1086)
+++|.++|+.+.+ ...... -......++|++ +|...++..-|++|.+||+.+ .+
T Consensus 296 ~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 296 KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred CCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 5889999999763 333332 345678999999 776666778899999999987 45
Q ss_pred eEEEeccccCCe-----EEEEEeCCCCEEEEEeC---CCc----------EEEEECCCCcee
Q 001396 872 VISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQ 915 (1086)
Q Consensus 872 ~~~~l~~h~~~v-----~~l~~spdg~~l~s~s~---dg~----------i~iwd~~~~~~~ 915 (1086)
.+.++..|-.+- .++.++|||++|+++.. |+- -.++|+++++..
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 677776654421 22356899999998753 542 288999765533
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-08 Score=114.22 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=155.7
Q ss_pred EEeec-----CCCEEEEEe--CCeEEEEEccCceEEEEEcCC-CCCeEEEEE-c-CCCCCEEEEEe--------------
Q 001396 802 FALSK-----NDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM-------------- 857 (1086)
Q Consensus 802 l~~s~-----dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~-------------- 857 (1086)
.++|. ||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55565 899998886 477999999999988855432 345788888 5 8 788888774
Q ss_pred ----CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC-------------------------------
Q 001396 858 ----DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------------------------------- 902 (1086)
Q Consensus 858 ----~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg------------------------------- 902 (1086)
.++.+.+.|..+.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34589999999999888876322 456788999999999888653
Q ss_pred -------cEEEEECCCCceee-eeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCcc----------
Q 001396 903 -------QIFVWDVDGWGIQT-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---------- 962 (1086)
Q Consensus 903 -------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~---------- 962 (1086)
.|.|.|..+.+... ...+... ....++.+||||++++++ .+++|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35556655411001 1122222 135679999999999985 56789999999763
Q ss_pred --ceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCC----------CceeeeeccccccCCCCccCcccceEE
Q 001396 963 --CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAI 1030 (1086)
Q Consensus 963 --~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1086)
...+... ......++|++||...++...|+.|.+||+++ ...+.++... +.|. .....+.+
T Consensus 321 ~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpG----h~~~~~g~ 393 (595)
T 1fwx_A 321 SAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPG----HLKTVMGE 393 (595)
T ss_dssp GGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEE----EEEETTTT
T ss_pred cceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-cccc----cceeccce
Confidence 2222222 46788999999995455677899999999988 4455555421 1111 01122334
Q ss_pred EECCCCCCEEEEEeC
Q 001396 1031 AAHPLKPTQFAVGLT 1045 (1086)
Q Consensus 1031 ~~~p~~~~~l~~~~~ 1045 (1086)
+.+| ||++|+++..
T Consensus 394 t~~~-DGk~l~~~Nk 407 (595)
T 1fwx_A 394 TLDA-TNDWLVCLSK 407 (595)
T ss_dssp STTC-CSSEEEEEES
T ss_pred EeCC-CCCEEEEcCC
Confidence 5678 7888887765
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.3e-10 Score=124.47 Aligned_cols=190 Identities=7% Similarity=-0.037 Sum_probs=113.4
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++..+++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678899999999999999999986653 333 4565666667777 677778999999999999998877754422
Q ss_pred ceEEEeecccC-CccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 481 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 481 ~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..... .|.- ++..+++++.++.|+.||..+++.+..+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~~~--sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELVQA--SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHHTT--CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccccc--CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 11100 1111 33478888999999999999988877665543 2345678888888775 678999999999
Q ss_pred eeeeEEecccccCCceEEEEEecCC---CEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876665322 1222233332 5688899999999999999998887764
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=0.00024 Score=83.56 Aligned_cols=531 Identities=9% Similarity=-0.002 Sum_probs=277.7
Q ss_pred eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eCCCEEEEEEec
Q 001396 342 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 420 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 420 (1086)
+|+.+ ..+.|+..|+.+........ + ..-..+..++|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 44443 34778888987654322101 1 123467899999976666655 457889999987
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE-
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 499 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~- 499 (1086)
...... .+.........+++.+.++. ++++-...+.|.+.++........+...-.....+++.|. +|.++++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 653221 12222245778999877665 4556666788999997654432223234455678888654 34444443
Q ss_pred EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEE
Q 001396 500 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 579 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 579 (1086)
+..+.|...+++......... .......++++++++.|+.+-. +...|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444433 4456789999999888877653 256799999876544 3343322 3456777
Q ss_pred EecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE-EecCCCEEEEEECCCcEEEEECCCCCeeeecccc
Q 001396 580 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 580 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
+.. ..++.+. ..+.|...|..+++....+..... ....+. +++..+. + ...+. ..
T Consensus 215 v~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n~C~----~~ 271 (628)
T 4a0p_A 215 QYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WNECA----SS 271 (628)
T ss_dssp EET--TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CCTTT----TT
T ss_pred EEC--CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ceEec----cC
Confidence 764 3555544 578899999888776666543211 123332 2221110 0 00000 00
Q ss_pred ccceeeeEEc-cCCCceeccccCCeeee-cCCC-CCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEE
Q 001396 658 SDNLRKLSVN-PISTVTGAGIANGSVSV-NEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 734 (1086)
Q Consensus 658 ~~~v~~~~~~-p~~~~~~~~~~~~~~~~-~~~~-s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l 734 (1086)
......+.+. |.+... ..+..+.... .+.. .+....++.+. ...|+-..+..... ....++. .....+.++
T Consensus 272 ng~C~~~C~~~~~~~~~-C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~l 345 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGFV-CGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAI 345 (628)
T ss_dssp GGGCSSEEEEETTTEEE-EECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEE
T ss_pred CCCcchhhhcCCCCCee-EEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEE
Confidence 0000001111 000000 0000000000 0000 01112222222 23343333321110 0111111 123457789
Q ss_pred EEecCCceEEEeec-cceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEE
Q 001396 735 TYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 813 (1086)
Q Consensus 735 ~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 813 (1086)
+|.+....|..+.. .+.|..++.+.... .. +.............+..+|+...++.|..
T Consensus 346 d~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 346 DYDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEE
T ss_pred EEecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEE
Confidence 99887666655543 46666554432110 00 10000000002345789999998887766
Q ss_pred Ee--CCeEEEEEccCceEEEEE-cCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeEEEeccccCCeEEEEE
Q 001396 814 AS--GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 814 ~~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~v~~l~~ 888 (1086)
+. .+.|.+.++. |+....+ ........++++.|..|.++.+-.... .|...++............-.....|++
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~ 484 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALAL 484 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEE
Confidence 65 4789999986 4444333 334567899999995565555543333 5776777633332222323446789999
Q ss_pred eCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE--EeCCeEEEEEcCCcccee
Q 001396 889 SDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLK 965 (1086)
Q Consensus 889 spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~ 965 (1086)
.++++.|..+. ..+.|...+++...... +.. ... .....+++.. ..|.. ...+.|...|..+|+...
T Consensus 485 D~~~~~LYw~D~~~~~I~~~~~dG~~r~~---~~~--~~~---~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 485 DSRLGKLFWADSDLRRIESSDLSGANRIV---LED--SNI---LQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEE---EEC--SSC---SCEEEEEEET--TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred eCCCCEEEEEeCCCCEEEEEeCCCCceEE---EEc--CCC---CCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcE
Confidence 99877766554 45789999997643221 211 111 1245666644 33433 345667777776666444
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=0.00049 Score=86.43 Aligned_cols=570 Identities=11% Similarity=0.079 Sum_probs=282.3
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----cccceEeccccccEeEEEecCCC---CcEEEEEEe---CCCcEE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTIK 462 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~v~~s~d~---~~l~l~s~~---~d~~i~ 462 (1086)
.++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .. .+++++ .+|+++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeEE
Confidence 567777655 788888888777777765322 1211122 344688888875421 21 344333 567888
Q ss_pred EEeCCCC-ceeEE--eecCCcceEEEeecc-cCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--CCceEEEEE--ecC
Q 001396 463 VWDAVTG-SRTYS--FEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAY--SAN 534 (1086)
Q Consensus 463 iwd~~~~-~~~~~--~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~--s~d 534 (1086)
+..-.-+ +.... +. .-..++.+.... +....+|+.+..+.+ +++.+... ........ ......++. ..+
T Consensus 407 ~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVAH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEETT
T ss_pred EEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcCC
Confidence 7742211 11111 22 123344443221 123457777666665 55554321 22222111 111111111 122
Q ss_pred CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 535 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 535 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
+ .++=.. ...|++.+...+..+..+.... ...|...+.+ +.+++.++ .+.+.++.+..+++.......
T Consensus 484 ~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~- 551 (1158)
T 3ei3_A 484 Q-QLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTE- 551 (1158)
T ss_dssp T-EEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEE-
T ss_pred C-eEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccC-
Confidence 2 343333 2237777766555555555433 2456666654 34666665 678888888766533221111
Q ss_pred CCCCCceEEEecC------CCEEEEEEC-CCcEEEEECCCCCeeeeccccc-cceeeeEEccCCCceeccccCCeeeecC
Q 001396 615 GLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 615 ~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
-...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+. .+
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~-- 614 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF-- 614 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE--
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee--
Confidence 1235888988763 479999997 9999999998765443221110 112222221 01
Q ss_pred CCCCCcccceeccccCccceeeeeecC--CccccccccCCcccccceEEEEEecCCc-eEEEeeccceeEEeeccCCccc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLT 763 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~ 763 (1086)
....++..|-.||.+..+.++... ........+ ...++.=..+...|. .+++.+..-.+ ++.-+
T Consensus 615 ---~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~l-iy~~~----- 681 (1158)
T 3ei3_A 615 ---ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTV-IYSSN----- 681 (1158)
T ss_dssp ---TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEE-EEESS-----
T ss_pred ---CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEE-EEEcC-----
Confidence 123456666666766554443211 010100110 112232223333332 23333332222 22111
Q ss_pred cCcccccccCCceecCCCCCceeeecCCCCCCCCCee-EEEeecC--CCEEEEEeCCeEEEEEccCce--EEEEEcCCCC
Q 001396 764 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFK--TILTIMPPSP 838 (1086)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~-~l~~s~d--g~~l~~~~dg~i~iwd~~~~~--~~~~~~~~~~ 838 (1086)
+. +....+ ....+. ...|+.. ..-++..+++.++|..+.+.. .++++. -..
T Consensus 682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~ 737 (1158)
T 3ei3_A 682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE 737 (1158)
T ss_dssp ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence 10 111111 111222 2234332 234555556668887765322 223332 335
Q ss_pred CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CeEEEEEcCC
Q 001396 839 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS 869 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~ 869 (1086)
.++.++++| ..+.++++..+ +.|++.|-.+
T Consensus 738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t 816 (1158)
T 3ei3_A 738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT 816 (1158)
T ss_dssp EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence 677888887 55554443211 2467777777
Q ss_pred ceeEEEecc-ccCCeEEEE---EeCC-CCEEEEEe----------CCCcEEEEECCCCceeeeeeeeccCCCccCCCCce
Q 001396 870 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 870 ~~~~~~l~~-h~~~v~~l~---~spd-g~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.+.+..+.- ....+.+++ |..+ ..+|+.|. ..|.|.++++..++.... .....+ +.++
T Consensus 817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv-~~~~v~------g~v~ 889 (1158)
T 3ei3_A 817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV-AEKEVK------GAVY 889 (1158)
T ss_dssp CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE-EEEEES------SCEE
T ss_pred CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE-EEEEcC------CcCE
Confidence 766554432 223345544 3322 46888775 347899999974332211 111112 3566
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcC--CCceeeeecc
Q 001396 935 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILS 1012 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~--~~~~~~~~~~ 1012 (1086)
+++-- +| +|+++-.+.+++|++...+.++ ....+-..|..+.....|.+++.|..-..|.+.... .+++.-.-.
T Consensus 890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~- 965 (1158)
T 3ei3_A 890 SMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR- 965 (1158)
T ss_dssp EEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE-
T ss_pred EEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe-
Confidence 66533 33 7777888999999998655433 111111113233333456788888777777765543 333321111
Q ss_pred ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1013 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
.-.+.+.+++.|-- ...++.++.+|.|.+...+..
T Consensus 966 --------D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 966 --------DFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp --------CCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTT
T ss_pred --------ecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCC
Confidence 12234566777763 468899999999999988653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-06 Score=105.42 Aligned_cols=375 Identities=13% Similarity=0.138 Sum_probs=207.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcce-----------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 519 (1086)
.++.++.++.|..+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46667778999999999999998875432210 11222 2347888899999999999999988876
Q ss_pred cCCCC----ceEEEEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeeeeEEecccc-----------------------
Q 001396 520 DAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------- 570 (1086)
Q Consensus 520 ~~~~~----~i~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------- 570 (1086)
..... .+.+.-.-.++ .++.+.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 55321 11111011244 444443221 1257899999999999887753210
Q ss_pred -----cCCceEEEEEecCCCEEEEEECCC-------------------cEEEEEcCCCeeEEEEcCCCCC-------CCC
Q 001396 571 -----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PEN 619 (1086)
Q Consensus 571 -----~~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v 619 (1086)
.......+++.|+...++.++.++ .|..+|..+|+.+..++...+. ...
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 001112468888888998887766 3999999999999888653221 111
Q ss_pred ceEEEecCCC---EEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccce
Q 001396 620 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 696 (1086)
Q Consensus 620 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 696 (1086)
....+..+|+ .+++++.+|.+.++|..+++.+......... +...+.+ ..+..........+++.
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~-- 370 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP-- 370 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence 2222334665 6888999999999999999887654422210 0001110 00000000000000000
Q ss_pred eccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCce
Q 001396 697 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 776 (1086)
Q Consensus 697 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 776 (1086)
.+..|.......-..++++|+...+.+...+-...+.. .. ..
T Consensus 371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~-~~---------------~~ 412 (668)
T 1kv9_A 371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN-EG---------------KD 412 (668)
T ss_dssp ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC-CG---------------GG
T ss_pred ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEeee-ec---------------cc
Confidence 00011100001112357888877666655442221110 00 00
Q ss_pred ecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEE-EEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEE
Q 001396 777 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854 (1086)
Q Consensus 777 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 854 (1086)
|....+. . .... + ++..++ ... +|.|..||+.+++.+.+...+. ......+.. .+.+++
T Consensus 413 ~~~~~~~------~----~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf 473 (668)
T 1kv9_A 413 FVTRKAF------N----TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVF 473 (668)
T ss_dssp CCCCSSC------C----CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEE
T ss_pred ccccccc------c----cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEE
Confidence 1000000 0 0000 0 111111 122 4789999999999988776432 222333444 456888
Q ss_pred EEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCC-EEEEEe
Q 001396 855 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 899 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~-~l~s~s 899 (1086)
+|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 89999999999999999998887543211 2244556776 444443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=0.00033 Score=82.25 Aligned_cols=501 Identities=9% Similarity=-0.049 Sum_probs=255.2
Q ss_pred CccEEEEEECCCCCEEEEEe-CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
-..+..++|++.+..|..+. ..+.|..+++++..... ..+.........+++.+.++. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 35678999999777776654 46789999987653211 122233356889999997665 556666788999999765
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEE-cCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
......+...-.....+++.+. +|.++++-- ..+.|...+++.................++++++++.|+.+-. +
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~ 191 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K 191 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---T
T ss_pred CCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---C
Confidence 4433333234455677888554 333444432 2467777777655444444444556789999998888877643 2
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe-
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN- 625 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s- 625 (1086)
...|...|+..........+.. .....+++..+ .++.+ ...+.|...|..+++....+.... .....+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~ 264 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFS 264 (619)
T ss_dssp TCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECC
T ss_pred CCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEc
Confidence 5679999987654433333222 23346666554 45554 467789999988887665554321 112333332
Q ss_pred cCCCEEEEEECCCcEEEEECCCCC--eeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCc
Q 001396 626 KNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 703 (1086)
Q Consensus 626 ~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 703 (1086)
+..+-. +..... ...+. .+...........| ..|.+-.+......+ . .....+|+.+ ..+.
T Consensus 265 ~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~~C--~C~~g~~l~~d~~~C---~----~~~~~~Ll~~-~~~~ 327 (619)
T 3s94_A 265 QQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFYQC--ACPTGVKLLENGKTC---K----DGATELLLLA-RRTD 327 (619)
T ss_dssp GGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSEEE--ECCTTCCBCTTSSCB---C----SSCSEEEEEE-ESSC
T ss_pred cccCCC--cccccc-----CCCCcccceEECCCCCCCceE--eCCchheecccCccc---C----CCCceEEEEE-cccc
Confidence 211000 000000 00000 00000000000000 111111110000000 0 0011122222 2345
Q ss_pred cceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEee-ccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 704 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 704 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
|+..++...... .+.++.. ....+.+++|.+.+..|..+. ..+.|..++.+...
T Consensus 328 i~~i~l~~~~~~---~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------------------- 382 (619)
T 3s94_A 328 LRRISLDTPDFT---DIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------------------- 382 (619)
T ss_dssp EEEEESSSTTCC---CEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------------
T ss_pred eEEEecCCCccc---eeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---------------------
Confidence 555554422211 1111111 234567899988655555444 45666666543211
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC-C
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D 859 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d 859 (1086)
. ..... ..-.....+|+...+..|..+. .+.|.+.++........+...-.....+++.|..|.+..+-.. .
T Consensus 383 ~-~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~ 457 (619)
T 3s94_A 383 S-QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 457 (619)
T ss_dssp C-EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS
T ss_pred c-EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC
Confidence 0 00000 0223456899998666666665 4789999987554333333344678999999944555554322 3
Q ss_pred CeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEE
Q 001396 860 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 938 (1086)
Q Consensus 860 g~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 938 (1086)
+.|...++............-.....|++.++++.|..+. ..+.|...+++...... .+..... ....+++
T Consensus 458 ~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~glav 529 (619)
T 3s94_A 458 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFTL 529 (619)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEEE
T ss_pred CEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEEE
Confidence 5777777764332222233345678999998776666554 45678889987644222 1111111 1234555
Q ss_pred ecCCCEEEEE--eCCeEEEEEcCCc
Q 001396 939 HKDQTRFLLV--HETHLAIYEAEEL 961 (1086)
Q Consensus 939 s~dg~~l~~~--~d~~i~vwd~~~~ 961 (1086)
..+ +|..+ ..+.|...+..+|
T Consensus 530 ~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 530 LGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ETT--EEEEECTTSSCEEEEESSSC
T ss_pred ECC--EEEEeecCCCeEEEEEcCCC
Confidence 433 44443 3455666666655
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-06 Score=88.06 Aligned_cols=223 Identities=12% Similarity=0.047 Sum_probs=144.2
Q ss_pred ccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 391 VSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
..+..++|++++..|..+ ..++.|.+++..++.... ...........+++++++.. ++++....+.|.+++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999977666655 456799999998754221 12222346789999998764 4555566789999997644
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
...............+++.+ ++..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEee--CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 32222222224567888854 3334444443 468888887654433333333446789999999888877653
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
+.+.|..+|...........+. .....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~ 259 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA 259 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred CCCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeec
Confidence 2568999998765544333322 234566654 45666655 56899999999999988886432 1235788888
Q ss_pred cCCC
Q 001396 626 KNGT 629 (1086)
Q Consensus 626 ~~~~ 629 (1086)
|++.
T Consensus 260 ~~~~ 263 (267)
T 1npe_A 260 LSQC 263 (267)
T ss_dssp CSCC
T ss_pred CccC
Confidence 8764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=0.00072 Score=84.92 Aligned_cols=552 Identities=8% Similarity=-0.008 Sum_probs=283.9
Q ss_pred ccEEEEEEC---CCCCEEEEEeCCCEEEEEEecCCCccccceEecccc---ccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 391 VSVNRVVWS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---GNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 391 ~~V~~l~~s---pdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~---~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
..++.+... ....||+.+..+.+ .|+.+... .+... ...+-. ..+.+-.+ .++ .++=.. ...|++.
T Consensus 426 ~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l-~~~---~ivQVt-~~~Irli 497 (1158)
T 3ei3_A 426 KGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNV-AHQ---QLIQIT-SASVRLV 497 (1158)
T ss_dssp CEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEE-TTT---EEEEEE-SSCEEEE
T ss_pred cEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEc-CCC---eEEEEe-cCEEEEE
Confidence 455555543 24578887777765 66666432 12211 111111 11222211 222 233333 3457777
Q ss_pred eCCCCceeEEeecCC-cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecC------CC
Q 001396 465 DAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN------GR 536 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d------~~ 536 (1086)
+...+..+..+.... ..|...+.+ +..++.++ .+.+.++.++.+.... ....-...|.|+++.+. ++
T Consensus 498 ~~~~~~~~~~w~~p~~~~I~~As~n----~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~ 572 (1158)
T 3ei3_A 498 SQEPKALVSEWKEPQAKNISVASCN----SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP 572 (1158)
T ss_dssp ESSSCCEEEEECCTTCCCCCEEEEC----SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCS
T ss_pred ECCCCeEEEEEECCCCCEEEEEEeC----CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccccc
Confidence 766666666665433 356655542 23555554 6788888776543221 11223457999998763 36
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe--cCCCEEEEEECCCcEEEEEc--CCCeeEEEEcC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILAAGDDHVIKIWDM--NKVQLLTTIDA 612 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~ 612 (1086)
+++.|.. .++.++++++.+.+.+....-.. .....++.+. ....++.+|-.||.+..+.+ .+|++...-..
T Consensus 573 ~~aVg~~---~d~tv~I~sL~~l~~~~~~~L~~--~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~ 647 (1158)
T 3ei3_A 573 LCAIGLW---TDISARILKLPSFELLHKEMLGG--EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKV 647 (1158)
T ss_dssp EEEEEET---TTTEEEEEETTTCCEEEEEECCS--SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEEC---CCCEEEEEECCCCCeEEEEECCC--CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeE
Confidence 7777763 25689999998766554433211 1233444333 23457888999999865554 45655433211
Q ss_pred CCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCc
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 692 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~ 692 (1086)
.-+..++.-..+...|..-+.+..+....++.....-.+..+ .-..+..+ ..|+....|+|
T Consensus 648 ~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l--~~~~v~~~-----------------~~F~se~~~~g 708 (1158)
T 3ei3_A 648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV--NLKEVNYM-----------------CPLNSDGYPDS 708 (1158)
T ss_dssp ECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB--SSSCCCEE-----------------EEECCSSSTTE
T ss_pred EcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc--ChHHhceE-----------------eccCcccCCCc
Confidence 111234555555555554444445555555554322111111 11111111 11222212333
Q ss_pred ccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC------------
Q 001396 693 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN------------ 760 (1086)
Q Consensus 693 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~------------ 760 (1086)
-.+ ..++.+++..++.........+. -...++.++++|+.+.++.+..+... ++....
T Consensus 709 ~v~---~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~ 778 (1158)
T 3ei3_A 709 LAL---ANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVLSSRIEV--QDTSGGTTALRPSASTQA 778 (1158)
T ss_dssp EEE---ECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSSSEEESSCCHHHHC
T ss_pred EEE---EcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEEEEeccc--cccccccchhhhhhhhhh
Confidence 222 22345777765432211112221 23467899999998877666544211 111000
Q ss_pred -----------------ccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEE---eecC-CCEEEEEe----
Q 001396 761 -----------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN-DAYLFSAS---- 815 (1086)
Q Consensus 761 -----------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~---~s~d-g~~l~~~~---- 815 (1086)
....-+.......+++.|+.+...+....+.. ...+.+++ |..+ ..++++|.
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~~~~lvVGTa~~~ 855 (1158)
T 3ei3_A 779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDPNTYFIVGTAMVY 855 (1158)
T ss_dssp SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCCCEEEEEEeeecC
Confidence 00000111234567888888887666666643 33444444 3333 47888774
Q ss_pred -------CCeEEEEEccCceEEEEEc-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEE
Q 001396 816 -------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 887 (1086)
Q Consensus 816 -------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~ 887 (1086)
.|.|.+|++..++...... ...+.+++++-- +|+++| |- ..+|++|++...+.+..-..+-..|..+.
T Consensus 856 ~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~ 931 (1158)
T 3ei3_A 856 PEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYNNIMALY 931 (1158)
T ss_dssp TTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECCCSCEEE
T ss_pred CCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccccEEEEE
Confidence 2569999987554332221 245778888755 454444 43 47899999986654331111222243333
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCc------
Q 001396 888 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL------ 961 (1086)
Q Consensus 888 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~------ 961 (1086)
....+.+++.|..-..|.+...+..+... ..+.. +... .+++++.|-.++.++++=.+|.+.++.....
T Consensus 932 l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~-D~~~---~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~ 1006 (1158)
T 3ei3_A 932 LKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIAR-DFNP---NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEE 1006 (1158)
T ss_dssp EEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEE-CCSC---BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTG
T ss_pred EeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEe-eccc---ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccc
Confidence 43457889998887778776655422111 11111 1111 3688999987776555556788888876541
Q ss_pred -cceeccccCC-ccCEEEEEE---eCC---------CCEEEEEECCCcEEEEEc
Q 001396 962 -TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 962 -~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~s~~~Dg~v~vWd~ 1001 (1086)
+.+...-.-| ...|+++.- .+. ...++.++.+|.|.+.--
T Consensus 1007 ~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1007 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp GGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 1111111112 556777652 222 234677888998877643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-06 Score=87.13 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=156.2
Q ss_pred CEEEEEeCCCEEEEEEecCCCcccc--ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
.+|..+.. +.|+.+++.+...... ...+......+..++|+++++. ++++....+.|.+++...+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555543 4789999887542110 0112222345789999998775 455666678999999876654333333334
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC-
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC-
Confidence 6778888543 334555556678999999876544333333334678999999777766654321 1357888887643
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 638 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 638 (1086)
....+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. +..++++. ..+
T Consensus 157 ~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 157 NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTT
T ss_pred CcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCC
Confidence 333332111 24678999999887776655 5678999999765544444321 123456654 45555554 568
Q ss_pred cEEEEECCCCCeeeeccccc-cceeeeEEccC
Q 001396 639 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 669 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~p~ 669 (1086)
.|..++..+++.+..+.... .....+++.|.
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776665332 23445555543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.6e-10 Score=122.05 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCcc
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 928 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 928 (1086)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+.++++.+++++.||.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456888999999999999999999988876 55666666778888888889999999999887643211111100000
Q ss_pred CCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCcee
Q 001396 929 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1007 (1086)
Q Consensus 929 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~ 1007 (1086)
....++.++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.+
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 011112344 4444 6789999999999998765332 21 2456778889999999999999999999988
Q ss_pred eeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCCCcEEEEccCCCCCCCCCC
Q 001396 1008 CRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1064 (1086)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 1064 (1086)
.++....+.. .++.++ ....+++++.||.|+.||.......|...
T Consensus 154 W~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 7765222111 112220 01567788999999999998877778654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-06 Score=89.92 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=138.5
Q ss_pred CeeEEEeecCCCEEEEEe---CCeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 798 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555544 3789999999999998876322 233456665 4456666667899999999999999
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCe
Q 001396 874 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 952 (1086)
Q Consensus 874 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 952 (1086)
.++..-.. ....+++||+.|+.+..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 88863211 1244677888887777788999999988664442222211 1110 135678888 77554444 5689
Q ss_pred EEEEEcCCccceeccccCC------------ccCEEEEEEeCCCCE-EEEEECCCcEEEEEcCCCc
Q 001396 953 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRM-VFTSFVDGTLSIHEASNLE 1005 (1086)
Q Consensus 953 i~vwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~-l~s~~~Dg~v~vWd~~~~~ 1005 (1086)
|.+.|..+++.+..+..+. ......++|+|+++. ++++.....+++-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999877654320 135689999999865 5555577889988887653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-05 Score=93.12 Aligned_cols=378 Identities=11% Similarity=0.004 Sum_probs=204.6
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeecCCc-ce----------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE
Q 001396 451 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 517 (1086)
Q Consensus 451 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~-~v----------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~ 517 (1086)
.++.++. ++.|.-+|. ++|+.+.++..... .+ ..+++ .+..++.++.|+.|..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3555666 789999999 89999877653321 00 11222 23478888999999999999999887
Q ss_pred EecCCCC----ceEE-EEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeeeeEEeccccc-------------------
Q 001396 518 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 571 (1086)
Q Consensus 518 ~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 571 (1086)
....... .+.+ ... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6654331 1211 111 244 444443211 12578999999999988776643200
Q ss_pred ---------------CC-ceEEEEEecCCCEEEEEECC----------------CcEEEEEcCCCeeEEEEcCCCCC---
Q 001396 572 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 616 (1086)
Q Consensus 572 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 616 (1086)
.. ....+++.++...++.++.+ +.|..+|..+|+.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235677777777776642 35999999999999887643211
Q ss_pred ----CCCceEEEecCCC---EEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCC
Q 001396 617 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 689 (1086)
Q Consensus 617 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s 689 (1086)
.....+....+|+ .++.++.+|.+.++|..+++.+.........-..-.+.+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 1111122234674 577888899999999999987766542210000000000
Q ss_pred CCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccc
Q 001396 690 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 769 (1086)
Q Consensus 690 ~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 769 (1086)
..++.+....... .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 357 ~~g~p~~~~~~~~----------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 357 KTGTPVRDPEFAT----------RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp TTCSEEECGGGCC----------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred cCCceecccccCC----------CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 0000000000000 000000001111000011134678898888888777644444332110
Q ss_pred cccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCC
Q 001396 770 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 849 (1086)
Q Consensus 770 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 849 (1086)
...+. . .-.....+..+|.+. ....+|.|..||..+++.+.++.... .+....+.. .
T Consensus 418 ---------~~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 00011 0 000011122233321 00124789999999999888775322 222222333 3
Q ss_pred CCEEEEEeCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCCCEEEE
Q 001396 850 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 897 (1086)
Q Consensus 850 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~s 897 (1086)
+.++++++.||.|+.+|..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 457777999999999999999999888743221 122445677765553
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-06 Score=103.29 Aligned_cols=288 Identities=13% Similarity=0.095 Sum_probs=177.5
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-ccE-EEEEECCCCCEEEEEeCCCEEEEEEecC
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG 421 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~spdg~~las~~~d~~i~iwd~~~ 421 (1086)
+.+++.++.|.-+|..+|+.+-......- ... ..... ..+ ..+++ ++..|++++.|+.|..+|..+
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEVA-----KVK-----ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCeEEEEECCCChhceEECCCCC-----ccc-----cccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence 56677789999999999998765332100 000 00000 000 11222 356788888999999999999
Q ss_pred CCccccceEeccc--cccEeE-EEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCC-cc----------
Q 001396 422 GSDARQQLEIDAH--VGNVND-LAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG-AP---------- 481 (1086)
Q Consensus 422 ~~~~~~~~~~~~h--~~~v~~-v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~-~~---------- 481 (1086)
|+.+-... .... ...+.+ ... .++. ++.+.. ++.|..+|.++|+.+.++.... .+
T Consensus 137 G~~~W~~~-~~~~~~~~~~~~~P~v-~~~~---v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~ 211 (668)
T 1kv9_A 137 GKAIWSQQ-TTDPAKPYSITGAPRV-VKGK---VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211 (668)
T ss_dssp CCEEEEEE-CSCTTSSCBCCSCCEE-ETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred CCEeeeec-cCCCCCcceecCCCEE-ECCE---EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccc
Confidence 98654321 1111 011111 111 1343 333432 5899999999999998775311 00
Q ss_pred --------------------eEEEeecccCCccEEEEEEcCC-------------------eEEEEEcCCCceeEEecCC
Q 001396 482 --------------------VYSLCPHAKENIHFIFSISVDG-------------------KIKAWLYDSLGARVDYDAP 522 (1086)
Q Consensus 482 --------------------v~~~~~~~~~~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~~ 522 (1086)
...+++ +++..+++.++.++ .|..+|.++++.+..+...
T Consensus 212 ~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 212 EAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred cccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 012334 33445777877766 3999999999988877543
Q ss_pred C---------CceEEEEEecCCC---EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc---------cCCc-------
Q 001396 523 G---------LGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNS------- 574 (1086)
Q Consensus 523 ~---------~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~------- 574 (1086)
. .+.....+..+|+ .++.+.. ++.++++|..+|+.+........ ...+
T Consensus 290 ~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~ 365 (668)
T 1kv9_A 290 PGDSWDFTATQQITLAELNIDGKPRKVLMQAPK----NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVR 365 (668)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTT
T ss_pred CCccccccCCCCcEEEEeccCCcEEEEEEEECC----CCEEEEEECCCCCEeccccccccccccccccccCCcccccccc
Confidence 2 2222233344675 4555543 77899999999998744332110 0000
Q ss_pred -----------------eEEEEEecCCCEEEEEE------------------------------------CCCcEEEEEc
Q 001396 575 -----------------VSVVHFDTAKDQILAAG------------------------------------DDHVIKIWDM 601 (1086)
Q Consensus 575 -----------------v~~~~~~~~~~~l~~~s------------------------------------~dg~i~iwd~ 601 (1086)
-..++++|+...++... .+|.|+.||+
T Consensus 366 ~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~ 445 (668)
T 1kv9_A 366 YEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP 445 (668)
T ss_dssp CSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET
T ss_pred ccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC
Confidence 11267888777766521 2378999999
Q ss_pred CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecccc
Q 001396 602 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 657 (1086)
Q Consensus 602 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 657 (1086)
.+++.+........ .....+...+.++++++.|+.++.||..+++.+..+...
T Consensus 446 ~tG~~~W~~~~~~~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 446 VKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCcEEEEccCCCC---CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99999887765432 334455567889999999999999999999988777643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.5e-06 Score=94.86 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=121.5
Q ss_pred CCeEEEEEccCceEEEEEcCCCCC-------------------------------------e-EEEEEcCCCCCEEEEEe
Q 001396 816 GGVISLYIVMTFKTILTIMPPSPT-------------------------------------A-TSLAFNPHDNNVIAIGM 857 (1086)
Q Consensus 816 dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------i-~~l~~s~~d~~~lasg~ 857 (1086)
+|.|+.+|..+|+.+..+...... + ..+++.+ ...++..+.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 567888888888888776532211 0 1356667 555777776
Q ss_pred CC----------------CeEEEEEcCCceeEEEecc--cc--------CCeEEEEEe-CCC---CEEEEEeCCCcEEEE
Q 001396 858 DD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL---NILVSSGGDAQIFVW 907 (1086)
Q Consensus 858 ~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~v~~l~~s-pdg---~~l~s~s~dg~i~iw 907 (1086)
.+ +.|.-+|..+|+.+..++. |. .++. +... .+| +.++.++.+|.+.+.
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 3899999999999877664 21 1121 2222 567 567778999999999
Q ss_pred ECCCCceeeeeeeec----------cCCCcc----------C-----------CCCceEEEEecCCCEEEEE--------
Q 001396 908 DVDGWGIQTCRSLQT----------PDGVMT----------L-----------APSETHIQFHKDQTRFLLV-------- 948 (1086)
Q Consensus 908 d~~~~~~~~~~~~~~----------~~~~~~----------~-----------~~~v~~~~~s~dg~~l~~~-------- 948 (1086)
|..+++..-...+.. ..+... . ...-..++|+|+..++.+.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999987543222110 000000 0 0011357788887776541
Q ss_pred --------------------------------eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcE
Q 001396 949 --------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 996 (1086)
Q Consensus 949 --------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v 996 (1086)
..+.|..||+.+|+.+-+...+ .++..-.+...|.+++.++.||.+
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYL 496 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEE
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeE
Confidence 1256888888888876543222 122211233456778889999999
Q ss_pred EEEEcCCCceeeeecc
Q 001396 997 SIHEASNLEVQCRILS 1012 (1086)
Q Consensus 997 ~vWd~~~~~~~~~~~~ 1012 (1086)
+.||..+|+.+.++..
T Consensus 497 ~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 497 KARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred EEEECCCCCEEEEeeC
Confidence 9999999999988873
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-05 Score=89.84 Aligned_cols=378 Identities=11% Similarity=0.070 Sum_probs=202.8
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeecCCcce---------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC
Q 001396 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 522 (1086)
Q Consensus 452 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 522 (1086)
++.++.++.|.-+|.++|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445554459999999999988775433211 11222 2347888899999999999999988766543
Q ss_pred CC----ceE-EEEEec---CCC-EEEEEeeCC--CCceeEEEEeCCCCeeeeEEeccccc--------------------
Q 001396 523 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 571 (1086)
Q Consensus 523 ~~----~i~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 571 (1086)
.. .+. ...+.. +|+ .++++.... ..++.|+-+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111222 233 455543211 12678999999999887665431100
Q ss_pred ------------------CCceEEEEEecCCCEEEEEEC--------------------C----CcEEEEEcCCCeeEEE
Q 001396 572 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 572 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~ 609 (1086)
...-...++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123567777788887663 2 5899999999999988
Q ss_pred EcCCCCC----CCCce-EEEe---cCCC---EEEEEECCCcEEEEECCCCCeeeecccccc--ceeeeEEccCCCceecc
Q 001396 610 IDAGGGL----PENPR-ICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 610 ~~~~~~~----~~v~~-v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~~~~ 676 (1086)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++.+........ ....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~--------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK--------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence 7643211 01111 2222 4674 788899999999999999988776543221 01111000
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEee
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 756 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 756 (1086)
.+.........|.. +. . .+ +.....+..|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000001111100111112467788777777666553333332
Q ss_pred ccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCC
Q 001396 757 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 836 (1086)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~ 836 (1086)
.+.. ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 1100 0011 111111122223310 12578999999999988776533
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCCEEE
Q 001396 837 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 896 (1086)
Q Consensus 837 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~~l~ 896 (1086)
. ++..-.... .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+
T Consensus 486 ~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 486 L-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp S-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred C-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 2 221111122 34577789999999999999999998887543322 1266667886444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-06 Score=87.51 Aligned_cols=217 Identities=9% Similarity=0.002 Sum_probs=144.3
Q ss_pred ceEEEEEcCCCC--CeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeEEEecccc-CCeEEEEEeCCCCEEEEEeCC
Q 001396 827 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD 901 (1086)
Q Consensus 827 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~s~s~d 901 (1086)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 44556664 443 468999999 6755555443 5799999999999988865211 1223455552 2444455568
Q ss_pred CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccceeccccCC----ccCEE
Q 001396 902 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPIS 976 (1086)
Q Consensus 902 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v~ 976 (1086)
+.+.++|..+.+... .+... .. ....+++||+.|.++ .++.|.++|..+.+.+..+..+. -..+.
T Consensus 86 ~~v~viD~~t~~v~~--~i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIK--NFTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEE--EEECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEE--EEECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 899999999865433 22221 01 124577888877774 46789999999988777655432 12467
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCC---CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEc
Q 001396 977 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1053 (1086)
Q Consensus 977 ~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1053 (1086)
.+.|. ||+..+....++.|.+-|..+++.+.++......+. ........+..++|+|+...+++++...+.|.+-+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 786666655678999999999999999874321110 00111234578999995445777777889999999
Q ss_pred cCCC
Q 001396 1054 PNEP 1057 (1086)
Q Consensus 1054 ~~~~ 1057 (1086)
+.+.
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-05 Score=89.59 Aligned_cols=382 Identities=10% Similarity=0.032 Sum_probs=202.4
Q ss_pred EEEEEeC-CCcEEEEeC-CCCceeEEeecCCcc-----------eEEEeecccCC--ccEEEEEEcCCeEEEEEcCCCce
Q 001396 451 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 515 (1086)
Q Consensus 451 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~--~~~l~s~s~dg~i~vwd~~~~~~ 515 (1086)
.++.++. ++.|.-+|. ++|+.+.++...... ...+++.+..+ ..+++.++.|+.|..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4566666 888999999 899998777543211 11223311111 12388889999999999999998
Q ss_pred eEEecCCCC----ceEE-EEEecCCCEEEEEeeCC--CCceeEEEEeCCCCeeeeEEecccccC----------------
Q 001396 516 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH---------------- 572 (1086)
Q Consensus 516 ~~~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~---------------- 572 (1086)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876654331 1211 111 244 444443211 125789999999999887766432000
Q ss_pred ------------------Cce-EEEEEecCCCEEEEEECC----------------CcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 573 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 573 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
..+ ...++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 000 134667778888887765 379999999999998876543210
Q ss_pred ----CCce-EEEe---cCC---CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecC
Q 001396 618 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 686 (1086)
Q Consensus 618 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (1086)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+......
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 467778899999999999998876554211000000000 0000000000
Q ss_pred CCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCc
Q 001396 687 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766 (1086)
Q Consensus 687 ~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 766 (1086)
...+ .+.....+..|.......-..++++|+...+++...+....++..+..
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------ 424 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------ 424 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence 0000 000000111111111112235688999888877766533322211100
Q ss_pred ccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEc
Q 001396 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 846 (1086)
Q Consensus 767 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 846 (1086)
...+.. .-..-..+..+|.+.-......|.+..||+.+++.+.+..... +...-.+.
T Consensus 425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~ 481 (599)
T 1w6s_A 425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMA 481 (599)
T ss_dssp ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEE
T ss_pred ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceE
Confidence 000100 0000000111221100000024778999999999887765221 11111122
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCCEE
Q 001396 847 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL 895 (1086)
Q Consensus 847 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~~l 895 (1086)
. .+.+++.|+.||.++.||..+|+.+.+++-..+.+ .-+.+..||+..
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 2 34577779999999999999999998886433222 225556677643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-05 Score=92.50 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=142.5
Q ss_pred CCEEEEEeC-CCEEEEEEe-cCCCccccceEeccccc--------cE-eEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc
Q 001396 402 GSLLGVAYS-KHIVQLYAY-HGGSDARQQLEIDAHVG--------NV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 470 (1086)
Q Consensus 402 g~~las~~~-d~~i~iwd~-~~~~~~~~~~~~~~h~~--------~v-~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~ 470 (1086)
+..+.+++. ++.|.-+|. .+|+.+-... +..... .+ ..++. ++. .++.++.|+.+..+|.++|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAY--GAG--QIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEE--ECC--EEEEEeCCCEEEEEECCCCC
Confidence 445555555 677888888 7776543211 111000 00 11233 234 57777889999999999999
Q ss_pred eeEEeecCCc----ceEE-EeecccCCccEEEEEEc------CCeEEEEEcCCCceeEEecCCCCc--------------
Q 001396 471 RTYSFEGHGA----PVYS-LCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLG-------------- 525 (1086)
Q Consensus 471 ~~~~~~~h~~----~v~~-~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~-------------- 525 (1086)
.+.+...... .+.+ ..+ . ++ .++.++. ++.|..+|..+++.+..+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--A-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--E-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEEecCCCCCccceeccCCEE--E-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 9877653221 1211 111 1 33 5555554 799999999999988766543211
Q ss_pred ------------------------eEEEEEecCCCEEEEEeeCCC--------Cc----eeEEEEeCCCCeeeeEEeccc
Q 001396 526 ------------------------CTRMAYSANGRRLFSCGTSKE--------GE----SFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 526 ------------------------i~~~~~s~d~~~l~~~~~~~~--------~~----~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
...+++.++...++.+..+.. ++ +.|..+|..+|+.+-.++...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 023567777777776653210 11 369999999999988776432
Q ss_pred c------cCCceEEEEEecCCC---EEEEEECCCcEEEEEcCCCeeEEEEcCCCCC-----------C------------
Q 001396 570 L------QHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-----------P------------ 617 (1086)
Q Consensus 570 ~------~~~~v~~~~~~~~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~------------ 617 (1086)
. .......+....+|+ .++.++.+|.++++|..+|+.+......... .
T Consensus 293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCC
Confidence 0 001112223334674 5677889999999999999998776543210 0
Q ss_pred --------------CCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 618 --------------ENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 618 --------------~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.-..++++|+..++++...+....++...
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence 01347889998899888877655555443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.61 E-value=0.0037 Score=76.37 Aligned_cols=570 Identities=12% Similarity=0.076 Sum_probs=300.9
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
...|.++.-..+|.. -.|+.+| +..||-.+ ... +... .......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~---~~~-----~~~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI--WIGSNKG-LFSYDGYS---TQQ-----HFTY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCE--EEEESSC-EEEECSSC---EEE-----CSCT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCE--EEEECCC-ccccCCCc---eEE-----EEcc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 347999999999963 3455555 56676322 111 0000 01123568888877766 5566
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-----cCCcce
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV 482 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v 482 (1086)
|+.+| +..||..+++... . .......|.++.. .+|. |..++.+ -+..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~-~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ-P--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC-C--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC-c--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66666 7899987753221 1 1112335777654 3554 4445544 6888998776543 231 113456
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-cC----CCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
.++.. +.++. |..++.+ -|..++..+....... .. ....|.++....++..|..++. +-+..+|..
T Consensus 149 ~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIR--TKDNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEE--cCCCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 66655 33444 4445554 4667776654432211 11 1224788888887776555542 238889987
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 632 (1086)
+++........ ...|.++....++... .|+. +-+.+++..+++......... ....|.++....+|. |-
T Consensus 220 ~~~~~~~~~l~---~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQTEAFH---NNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEEEEEE---EEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEeccCCC---CCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 76543322111 2468888887777554 4554 458888887765433221110 112356666666665 44
Q ss_pred EEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeec
Q 001396 633 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 712 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~ 712 (1086)
+|+..| +.++.... ...... ..+
T Consensus 294 iGT~~G-l~~~~~~~--~~~~~~----------~~~-------------------------------------------- 316 (758)
T 3ott_A 294 LGTDYG-ISLSRYNS--ALQFIP----------ISQ-------------------------------------------- 316 (758)
T ss_dssp EEESSS-EEEECCCC---CEEEE----------HHH--------------------------------------------
T ss_pred EEeCCc-ccccccCC--ceeEEe----------ccc--------------------------------------------
Confidence 455555 44332111 110000 000
Q ss_pred CCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCC
Q 001396 713 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 792 (1086)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 792 (1086)
.........|.++....+|...+.+ .+|.. .++-..... .....+...... ..+
T Consensus 317 ---------~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl~-~~~~~~~~~---------~~~~~~~~~~~~----~~l-- 370 (758)
T 3ott_A 317 ---------ITGTGDGNQFYSLFRDSKGFYWFGG-ANGLI-RFTDPAGER---------HDAIWYRMGDKT----YPL-- 370 (758)
T ss_dssp ---------HSCSCCCCBEEEEEECTTCCEEEEE-TTEEE-EESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred ---------CCCCCCCceEEEEEEcCCCCEEEee-CCcce-eeccccccc---------ceeEEeccCCcC----CCC--
Confidence 0000012356777777777755554 45533 333221100 001111110000 001
Q ss_pred CCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEE--cC----CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001396 793 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN 866 (1086)
Q Consensus 793 ~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd 866 (1086)
....|.++...++|.+.+.. ++-+..||..+++..... .. ....|.++...+ ++++ -.|+..+-+.++|
T Consensus 371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVD 445 (758)
T ss_dssp --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEE
T ss_pred --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEc
Confidence 23568889888888876654 667999999887654322 11 224588888876 5654 4477666688888
Q ss_pred cCCc-----eeE---EEec---c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCce
Q 001396 867 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 867 ~~~~-----~~~---~~l~---~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
..+. ... ..+. + ....|.++...++|++.+.++..+-|..+|..+++... +.. .... ....+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~~-~~~~~~ 520 (758)
T 3ott_A 446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DELT-GEKSPN 520 (758)
T ss_dssp HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTSC-GGGCEE
T ss_pred cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCcC-CCcccc
Confidence 6531 111 1111 1 12358899999999888744444458889987754322 111 1110 012477
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCccceeccccC-CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccc
Q 001396 935 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1013 (1086)
Q Consensus 935 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~ 1013 (1086)
++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|. |..++..| +..+|..+.+... +.
T Consensus 521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~-- 593 (758)
T 3ott_A 521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN-- 593 (758)
T ss_dssp EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C---
T ss_pred eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec--
Confidence 888888998887654 56888887765432210111 13567888764 665 44455666 7778888765542 11
Q ss_pred cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1014 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
++.. .+. .++.-.+ + ..|..|+.+|-+.+ +.
T Consensus 594 --~~~~----~~~-~~~~~~~-~-G~l~fG~~~Gl~~f-~p 624 (758)
T 3ott_A 594 --MTNK----RFT-SLLFDPK-E-DCVYLGGADGFGIS-HS 624 (758)
T ss_dssp ---CCC----CCS-EEEEETT-T-TEEEEECBSEEEEE-EC
T ss_pred --CCCC----cee-eeEEECC-C-CcEEEecCCceEEE-Ch
Confidence 1111 111 2222233 3 56777888875544 44
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.8e-06 Score=99.99 Aligned_cols=250 Identities=9% Similarity=-0.009 Sum_probs=134.4
Q ss_pred CceEeeec-CCCceEEEEEeccC----cEEEEecCCC-ceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCC
Q 001396 330 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403 (1086)
Q Consensus 330 ~V~~~~~s-pdg~~lla~gs~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 403 (1086)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57889999 99997555544443 4999999998 63321 0 10 1234688999999
Q ss_pred EEEEEeCC-----CEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEe-CCCcEEEEeCCCCc-ee--E
Q 001396 404 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 473 (1086)
Q Consensus 404 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~-~d~~i~iwd~~~~~-~~--~ 473 (1086)
.|+....+ ..|+++++.++...... .+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 36888888776432111 222 223346688999999964333322 23468889988763 22 3
Q ss_pred Ee-ecCCcceEEEeecccCCccEEEEEEcC----CeEEEEEcCCCceeEE-ecCCCCceEEEEEecCCCEEEEEeeCCCC
Q 001396 474 SF-EGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 474 ~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+ ........++.|+ .++.+++....+ ..|..+++.+...... +..+...+.--.++++++.|+.... .++
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~-~~g 389 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR-RAG 389 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE-ETT
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE-eCC
Confidence 33 3334445555432 233344444433 2566667654222111 2222222222234445666665543 234
Q ss_pred ceeEEEEeC-------CCCeeeeEEecccccCCceEEEEE----ecCCCEE-EEEECC---CcEEEEEcCCCee
Q 001396 548 ESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL 606 (1086)
Q Consensus 548 ~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~ 606 (1086)
...|+++|+ .+++..+.+.... ...+..+.+ ++++..+ ++.+.. +.++.+|+.+++.
T Consensus 390 ~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 390 LTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred EEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 667888886 4443133332211 112223322 3455544 333322 4577778877654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-06 Score=83.44 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=130.2
Q ss_pred EeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCCceeEEeecCCcce-EEEeecccCCccEEEEEEcCCeEEEEEcCCCc
Q 001396 438 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 514 (1086)
Q Consensus 438 v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 514 (1086)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... ..+++ . ++.+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~-g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--W-KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--e-CCEEEEEEeeCCEEEEEECccCc
Confidence 4778898 554 667777666 89999999999998886443221 22443 2 22444555568999999999999
Q ss_pred eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc--cCCceEEEEEecCCCEEEEEE-
Q 001396 515 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG- 591 (1086)
Q Consensus 515 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s- 591 (1086)
.+..+..... ...+++|++.|+.... ...|.++|..+.+.+..+..... ....++.+.|. +|. +++..
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~SdG----s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w 189 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSDG----TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW 189 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECCS----SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred EEEEEECCCC---ceEEecCCCEEEEECC----CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc
Confidence 8888776442 2344577887777642 56799999999998888765320 11345567776 664 55544
Q ss_pred CCCcEEEEEcCCCeeEEEEcCCCC----------CCCCceEEEecCCCEEEEEECC
Q 001396 592 DDHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 592 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
.++.|.+.|..+++.+..+...+- ....+.+|++|+++.|++.+..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 688999999999999998876421 1234789999998888887753
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-05 Score=88.32 Aligned_cols=205 Identities=12% Similarity=-0.002 Sum_probs=122.3
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEecccccc-------EeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
..+++++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|..+|.++|+.+...
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 344455553448888888887644221 1110000 011222 234 4677788999999999999998776
Q ss_pred ecCCc----ceE-EEeeccc-CCcc-EEEEEEc------CCeEEEEEcCCCceeEEecCCCCc-----------------
Q 001396 476 EGHGA----PVY-SLCPHAK-ENIH-FIFSISV------DGKIKAWLYDSLGARVDYDAPGLG----------------- 525 (1086)
Q Consensus 476 ~~h~~----~v~-~~~~~~~-~~~~-~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~----------------- 525 (1086)
..... .+. +-.+... .+++ .+++++. +|.|..+|..+++.+.........
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 54321 111 1111111 1232 5656543 789999999998887755332100
Q ss_pred ------------------------eEEEEEecCCCEEEEEeeCC----------CC----------ceeEEEEeCCCCee
Q 001396 526 ------------------------CTRMAYSANGRRLFSCGTSK----------EG----------ESFLVEWNESEGAI 561 (1086)
Q Consensus 526 ------------------------i~~~~~s~d~~~l~~~~~~~----------~~----------~~~i~iwd~~~~~~ 561 (1086)
-..++++|+...++.+..+. .+ .+.|..+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 02356777778887766421 11 26899999999999
Q ss_pred eeEEecccc-------cCCceEEEEEe-cCCC---EEEEEECCCcEEEEEcCCCeeEEEEcCC
Q 001396 562 KRTYQGLQL-------QHNSVSVVHFD-TAKD---QILAAGDDHVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 562 ~~~~~~~~~-------~~~~v~~~~~~-~~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 613 (1086)
+-.++.... ...++ -+... .+|+ .++.++.+|.++++|..+|+.+......
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 888764220 00112 12222 4664 6778999999999999999998776543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-05 Score=79.91 Aligned_cols=186 Identities=11% Similarity=0.115 Sum_probs=127.5
Q ss_pred ccEEEEEECCCCCEEEEEeCCC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
.-...+.|+ ++.+..+.+.+| .|+++|+++++.++.. .+. .........++++. +.+..-.++.+.++|.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-~l~---~~~FgeGit~~g~~-ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI-ELG---KRYFGEGISDWKDK-IVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE-ECC---TTCCEEEEEEETTE-EEEEESSSSEEEEEETTT
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE-ecC---CccceeEEEEeCCE-EEEEEeeCCEEEEEECcc
Confidence 445789998 777777777765 8999999999876643 222 23333333445665 344455688999999999
Q ss_pred CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC--C---CceEEEEEecCCCEEEEEee
Q 001396 469 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--G---LGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 469 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~---~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+... + ..++.+.+. +|+..+..-.
T Consensus 117 ~~~~~ti~~~~eG-~glt~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 117 LRQVRSFNYDGEG-WGLTH----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp CCEEEEEECSSCC-CCEEE----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred CcEEEEEECCCCc-eEEec----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 9999998753322 33432 4556666666889999999998877765542 2 234457776 6754443322
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccc---------cCCceEEEEEecCCCEEEEEEC
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
...|.+.|..+|+.+..+..... .....+.++|+|+++.|+..+.
T Consensus 191 ----~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 ----TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ----SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ----CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 45799999999999988875311 1235689999999998888775
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-05 Score=79.06 Aligned_cols=186 Identities=9% Similarity=0.065 Sum_probs=129.0
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
..-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++|.++.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTT
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcC
Confidence 3445788887 4667777788889999999999987754 332 2333223345565 3444557899999999999
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC--C---ceEEEEEecCCCEEEEEeeC
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~---~i~~~~~s~d~~~l~~~~~~ 544 (1086)
+.+.++..... -..++. ++..|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+..+....
T Consensus 127 ~~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~- 199 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH- 199 (268)
T ss_dssp EEEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-
T ss_pred cEEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC-
Confidence 99999875332 234443 45677777779999999999988777655422 1 34567776 7754433322
Q ss_pred CCCceeEEEEeCCCCeeeeEEeccc----------ccCCceEEEEEecCCCEEEEEEC
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
...|.+.|..+|+.+..+.... ....-.+.++++|+++.|+..+.
T Consensus 200 ---s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 200 ---SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ---CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ---CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 4579999999999988887531 01246789999999888777664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.4e-05 Score=81.82 Aligned_cols=263 Identities=10% Similarity=0.007 Sum_probs=149.2
Q ss_pred eccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeecccccee--ee-e---eeecCCCccEEEEE
Q 001396 324 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML--FK-T---ALVRDPGVSVNRVV 397 (1086)
Q Consensus 324 l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~l~ 397 (1086)
+.+.-....+++|+++|+ ++.++..++.|..||..+++... |........ .. . .........+..++
T Consensus 14 ~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDIS 86 (322)
T ss_dssp EECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred cCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEE
Confidence 344334678899999997 46778888999999987765321 100000000 00 0 00000113578899
Q ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCccccce-Eecc-ccccEeEEEecC-CCCcEEEEEEeC----------------
Q 001396 398 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD---------------- 457 (1086)
Q Consensus 398 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~v~~s~-d~~~l~l~s~~~---------------- 457 (1086)
+.+ +|+ |.++...+.|..+|..+++. +... ...+ .......+++.+ +|+ +.++...
T Consensus 87 ~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 87 YNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTC
T ss_pred EcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccC
Confidence 998 565 55554445588888776532 2111 1111 123478899999 887 5554322
Q ss_pred -CCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE-EcCCeEEEEEcCCCc--eeEEecCCCCceEEEEEec
Q 001396 458 -DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA 533 (1086)
Q Consensus 458 -d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~ 533 (1086)
++.|..||..+++....... -.....+++ ++++..|+.+ +..+.|.+|++.... ....+....+ ...+++++
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 238 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence 36789999877764332221 223455777 4466655544 667899999987521 1111111223 77899999
Q ss_pred CCCEEEEEeeCC------CCceeEEEEeCCCCeeeeEEeccccc-CCceEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001396 534 NGRRLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 534 d~~~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
+|++.++..... ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++...++.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 998766654310 013568888874 7777777654211 134666666 3454444445677888888754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-05 Score=84.87 Aligned_cols=245 Identities=10% Similarity=0.006 Sum_probs=147.6
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEec-----------------cccccEeEEEecC-CC
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PC 447 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~v~~s~-d~ 447 (1086)
+.+.-....+++|.++|+++.++..++.|..|+..+++. ....... .....+..+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 333334566789999999888888899999999876542 2110000 1123578899998 56
Q ss_pred CcEEEEEEeCCCcEEEEeCCCCceeEEeecC-----CcceEEEeecccC-CccEEEEEEc-----------------CCe
Q 001396 448 KQISVITCGDDKTIKVWDAVTGSRTYSFEGH-----GAPVYSLCPHAKE-NIHFIFSISV-----------------DGK 504 (1086)
Q Consensus 448 ~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~-~~~~l~s~s~-----------------dg~ 504 (1086)
+ |+.+...+.|..+|..++.. ..+... ......+++ ++ +|.+.++... ++.
T Consensus 93 ~---l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 93 Q---LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp E---EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred c---EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCce
Confidence 5 44444445588899776543 222111 123566777 44 5555555432 367
Q ss_pred EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEecccccCCceEEEEEec
Q 001396 505 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 505 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
|..||..++....... .......++++++|+.|+.+.. ..+.|+.+++.... ....+.... + ...+++.+
T Consensus 167 v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~ 238 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNA 238 (322)
T ss_dssp EEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECT
T ss_pred EEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECC
Confidence 8888876554332211 1123456899999997766542 14579999987531 112222222 3 77899999
Q ss_pred CCCEEEEEEC----------CCcEEEEEcCCCeeEEEEcCCCC--CCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 583 AKDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 583 ~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
+|+..++... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++....+.|..+++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9986666544 467888887 4777777765432 234566666 4565555555678888888763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=6.5e-05 Score=80.39 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=140.1
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-CC-cEEEEeCCC
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 468 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-d~-~i~iwd~~~ 468 (1086)
.....++|+++|+++++-..++.|..||..++. .. . + .....+..+++.++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776678899999987532 11 1 1 2234688999999998 4554433 32 477778788
Q ss_pred CceeEEeec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE-e-------c--CCCCceEEEEEecCCCE
Q 001396 469 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 537 (1086)
Q Consensus 469 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~d~~~ 537 (1086)
|+....... .......++. ..++..+++...++.|.++|......... . . ........+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 1122334443 22344455544688888888765422111 0 0 111234455 889988
Q ss_pred EEEEeeCCCCceeEEEEeCCC-Cee--eeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 538 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
|+.+.. ..+.|+.+++.. ++. ...+.. . .....++++++|+..++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 256799999874 332 122211 1 245678899999877776678899999975 55533222222
Q ss_pred CCCCCceEEEe---cCCCEEEEEECCC
Q 001396 615 GLPENPRICFN---KNGTLLAVIANEN 638 (1086)
Q Consensus 615 ~~~~v~~v~~s---~~~~~l~~~~~dg 638 (1086)
......+++|. |+++.|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 23346889998 8888888776643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7.7e-06 Score=98.08 Aligned_cols=277 Identities=10% Similarity=0.035 Sum_probs=156.4
Q ss_pred EeeecC-CCceEEEEEeccC-----------cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 333 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 333 ~~~~sp-dg~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
++++.| +|+ +++.|+.+. .+.+||..+++-..... ....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 786 677776532 57888888876432100 1122333445678889
Q ss_pred CCCEEEEEeC-CCEEEEEEecCCCccccceEeccccccE-eEEEecCCCCcEEEEEEe-CC-----CcEEEEeCCCCcee
Q 001396 401 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 472 (1086)
Q Consensus 401 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~d~~~l~l~s~~-~d-----~~i~iwd~~~~~~~ 472 (1086)
+|+++++|+. +..+.+||..+++-... ..+ +..+. .+++..++|+ +++.|+ .+ ..+.+||..+++..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 45899999987643221 111 11221 3455667888 777777 34 57999999887643
Q ss_pred EEeecC-Ccce----EEEeecccCCccEEEEEEcCC---------eEEEEEcCCCceeEEecCC---------CCceEEE
Q 001396 473 YSFEGH-GAPV----YSLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM 529 (1086)
Q Consensus 473 ~~~~~h-~~~v----~~~~~~~~~~~~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~ 529 (1086)
.. ... ..+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++
T Consensus 328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 32 100 0000 00011 12344555555544 4677887765533221111 1122444
Q ss_pred EEec-CCCEEEEEeeCCC----Cce---eEEEEeCCCCeeeeEE--ecccccCCceEEEEEecCCCEEEEEECC------
Q 001396 530 AYSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------ 593 (1086)
Q Consensus 530 ~~s~-d~~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 593 (1086)
.|.. +++.++.|+.... ... .+.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence 5544 6777777764221 011 6888998877654433 1111 1223455667899999888754
Q ss_pred -----CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 594 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 594 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432222221122234556789999999885
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.7e-05 Score=75.31 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=127.1
Q ss_pred CCccEEEEEECCCCCEEEEEeCC--CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 389 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
...-...+.|++ +.+..+.+.+ ..|+++|+.+++.++.. .+.. .........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899986 5666666654 48999999999876643 2222 2222333334555 3444567899999999
Q ss_pred CCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC-----CceEEEEEecCCCEEEEE
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~d~~~l~~~ 541 (1086)
++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+..+..
T Consensus 93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 999999998754322 34443 44566666678999999999988777655432 234556654 66644443
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEeccc----------ccCCceEEEEEecCCCEEEEEEC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
-. ...|.+.|..+|+.+..+.... ....-.+.++++|+++.|+..+.
T Consensus 167 w~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 22 4479999999999998887431 11245789999999888888774
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.6e-06 Score=82.61 Aligned_cols=183 Identities=8% Similarity=0.066 Sum_probs=123.2
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCe--EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001396 798 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 874 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 874 (1086)
-...+.|+. +.+.++.+ +|.|+++|+++++.+..+ - .... ..+++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788874 44444444 588999999999988877 2 2233 345554 45666667778999999999999999
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeE
Q 001396 875 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 953 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i 953 (1086)
++..- ..- ..+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..+.. .++.|
T Consensus 131 ti~~~-~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v--~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPV--ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-Cce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccc--ccccccEEe-CCEEEEEECCCCeE
Confidence 88742 222 3344678888877778899999999876544322222 11110 134567776 77655554 56789
Q ss_pred EEEEcCCccceeccccC------------CccCEEEEEEeCCCCEEEEEEC
Q 001396 954 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 954 ~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
.+.|.++|+.+..+..+ -..-...++++|+++.|++.+.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999987664321 1246688999998766665543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.3e-05 Score=80.01 Aligned_cols=229 Identities=11% Similarity=0.079 Sum_probs=138.2
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC-C-eEEEEEcCCceeE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 873 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-~v~iwd~~~~~~~ 873 (1086)
.....++++++|+++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998666654 688999998754 333332 335688999999 78776655433 2 4777787777654
Q ss_pred EEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeee-----ccCCCccCCCCceEEEEecCCCEEEE
Q 001396 874 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ-----TPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 874 ~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
.... ........++..+++..+++-..++.|.++|..++......... ...+.. .....+ ++|++.|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 3222 12223455666666655665556888888887654211100000 000110 123444 899987776
Q ss_pred E--eCCeEEEEEcCC-ccc--eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee--eeccccccCCCC
Q 001396 948 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1020 (1086)
Q Consensus 948 ~--~d~~i~vwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~--~~~~~~~~~~~~ 1020 (1086)
+ ..+.|.+|++.. +.. ...+.. ......++++++|.++++....+.|.+++.. |+... .+. .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~----~~--- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----QG--- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG----GT---
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc----cc---
Confidence 4 467899999874 332 111111 1345668999999887777777899999975 65532 221 11
Q ss_pred ccCcccceEEEEC---CCCCCEEEEEeCCC
Q 001396 1021 SCLHVYPHAIAAH---PLKPTQFAVGLTNG 1047 (1086)
Q Consensus 1021 ~~~~~~~~~~~~~---p~~~~~l~~~~~dg 1047 (1086)
...+.+++|. | |++.|.++...+
T Consensus 254 ---~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 ---VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp ---CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred ---cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1346789998 6 566666665543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00052 Score=73.97 Aligned_cols=235 Identities=9% Similarity=0.025 Sum_probs=133.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEc---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 872 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 872 (1086)
...+..+++.+ +..++++..+.|.. ....|+.-.... .+...+..+++.+ ++++++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 55666666675433 222233222222 2335678888877 67666655 4564432 1222322
Q ss_pred E-EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCC
Q 001396 873 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 951 (1086)
Q Consensus 873 ~-~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 951 (1086)
- ....++...+..+++.+++.+++.+...+..+-+|-. +. ....+... .. ..+..+++++++..++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRT--TS---RRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECC--SS---SCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCC--CC---CccceeEECCCCCEEEEeCCc
Confidence 1 2223455678999999999888766544333333321 11 11222221 11 257889999999988888888
Q ss_pred eEEEEEcCCccceeccccC---CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccce
Q 001396 952 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1028 (1086)
Q Consensus 952 ~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1086)
.+++.+...|+.......+ +...+..+.+.+++..++++ .+|.| .+..+.|+--..+......+. .+ .
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~--~ 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NF--Y 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CC--C
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----Ce--E
Confidence 8877654435443332222 23468899999988877755 57777 456666644333321111111 13 3
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
++.|.+ ...+++++.+|.|.-++-
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEECC
T ss_pred EEEEEC--CCceEEEcCCceEEEEcC
Confidence 566654 356778889998776653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00062 Score=72.91 Aligned_cols=238 Identities=9% Similarity=-0.042 Sum_probs=145.5
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC---CceeEE-eecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~---~~~~~~-~~~h~ 479 (1086)
+|+.+.. ..|+..|+.+++... +......+..++|.++++. ++++-...+.|..+++.+ +..... +...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3444443 348888988765332 2223456789999987764 555666678999999876 222222 32222
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ..+.|...++...
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence 34567777432 34455666778899999987655444444444567899999977776655431 1357888887543
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
....+.... ....+.+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 333332211 25678999999888887765 5678999998754333222222222234677775 355555555678
Q ss_pred cEEEEECCCCCeeeec
Q 001396 639 RIKILETPESNSVDAA 654 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~ 654 (1086)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8988887766555444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.40 E-value=0.012 Score=71.85 Aligned_cols=532 Identities=11% Similarity=0.044 Sum_probs=274.7
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..|.++....+|. |-.|+.+ -+..||..+++.... .......|.++.. .+| .|..+
T Consensus 63 ~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig 118 (758)
T 3ott_A 63 TRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG 118 (758)
T ss_dssp SCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred ceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence 3688888888885 4455554 478999877542210 0111235777765 345 56566
Q ss_pred eCCCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-ecC----Ccce
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH----GAPV 482 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~-~~h----~~~v 482 (1086)
+.+| +..+|..+++......... .....|.++....+|. +.+ |+.. -+..+|..+++..... ... ...|
T Consensus 119 t~~G-l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i 193 (758)
T 3ott_A 119 ALNG-LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFV 193 (758)
T ss_dssp ETTE-EEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCE
T ss_pred cCCc-ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCcccccccee
Confidence 6664 8889987654221000000 1134688888888877 333 4444 5778887766532211 111 1236
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
.++.. +.++..|..|+. +-+..+|..+.............|.++....+|.+.+.. . . -+.+++..++...
T Consensus 194 ~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 194 NSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTPLQ 264 (758)
T ss_dssp EEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSCCE
T ss_pred EEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCcEE
Confidence 66655 334445555554 457778876654322212223457788888788766543 2 2 2788888766543
Q ss_pred eEEec----ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc-----CCCCCCCCceEEEecCCCEEEE
Q 001396 563 RTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 563 ~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
..... .......|.++....+|. |-.|+..| +.++... .. ..... .......|.++.-..+|.+.+
T Consensus 265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi- 339 (758)
T 3ott_A 265 HIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF- 339 (758)
T ss_dssp EECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-
T ss_pred EEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-
Confidence 22111 111235688888877765 45555566 5544332 11 11111 011112466676666776444
Q ss_pred EECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 634 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 634 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
|+.+| +..++..++.... + ..+... .
T Consensus 340 Gt~~G-l~~~~~~~~~~~~-~--------------------------------------------------~~~~~~--~ 365 (758)
T 3ott_A 340 GGANG-LIRFTDPAGERHD-A--------------------------------------------------IWYRMG--D 365 (758)
T ss_dssp EETTE-EEEESCTTSSCCC-C--------------------------------------------------EEECTT--C
T ss_pred eeCCc-ceeecccccccce-e--------------------------------------------------EEeccC--C
Confidence 45544 5555443321000 0 000000 0
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 793 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 793 (1086)
. +.......|.++.-..+|...+.+ . +-+..++...... ..+... .....
T Consensus 366 ~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~~~--------~~~~~ 415 (758)
T 3ott_A 366 K--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYNIV--------DNTGT 415 (758)
T ss_dssp S--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEEEE--------CCC--
T ss_pred c--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEeecC--------CCcCC
Confidence 0 000022457777777777755544 3 3455565432211 000000 00000
Q ss_pred CCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCc-----eEE---EEEc---C-CCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 794 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
.....|.++...++|.+.+....+-+.++|..+. ... ..+. + ....|.++...+ ++++.+.++..+-
T Consensus 416 ~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~G 494 (758)
T 3ott_A 416 YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKG 494 (758)
T ss_dssp CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSS
T ss_pred CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCC
Confidence 0234678888888887766555667888886531 111 1221 1 224589999988 7777663343455
Q ss_pred EEEEEcCCceeEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEE
Q 001396 862 ILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 938 (1086)
Q Consensus 862 v~iwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 938 (1086)
|..+|..+++....... ....+.++....+|.+.+. +..| |..++..++.... .. ..+... ..|.++..
T Consensus 495 l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~~--~~i~~i~~ 566 (758)
T 3ott_A 495 IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFSN--NEILSMTC 566 (758)
T ss_dssp EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----CCEEEEEE
T ss_pred cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCCc--cceEEEEE
Confidence 88899887765432211 1346788888888887765 4555 8888876644222 11 111111 35777776
Q ss_pred ecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEe-CCCCEEEEEECCCcEEEEEcC
Q 001396 939 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1002 (1086)
Q Consensus 939 s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~s~~~Dg~v~vWd~~ 1002 (1086)
. +|.+.+++ ++.+..+|..+.+...--.. ...+....+. +|| .|..|+.+|.+. ++..
T Consensus 567 ~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G-~l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 567 V-KNSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKED-CVYLGGADGFGI-SHSN 625 (758)
T ss_dssp E-TTEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTT-EEEEECBSEEEE-EEC-
T ss_pred C-CCCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCC-cEEEecCCceEE-EChh
Confidence 4 66555544 55688889887654321111 1223334444 466 455577888554 4543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00053 Score=74.53 Aligned_cols=249 Identities=11% Similarity=-0.010 Sum_probs=154.2
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.+..+|.+..+++ +|+++ ....|+..++........ .. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 3456777777755 44443 235688888765543221 22 2345789999987666665
Q ss_pred E-eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEe
Q 001396 408 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 408 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 486 (1086)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 5 466789999988764222 12222344678999986664 456666678999999765443333333445668888
Q ss_pred ecccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001396 487 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 565 (1086)
+.+. ++.++++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 34455555555 78888888765444433334446789999998888877643 2568999998754333333
Q ss_pred ecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 566 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 566 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 3222 456677773 34444444567778888876776665554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-05 Score=90.40 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=76.8
Q ss_pred EEEEec-CCCEEEEEeeCCC-------CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEE
Q 001396 528 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 598 (1086)
Q Consensus 528 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~i 598 (1086)
.+++.+ +++.++.|+...+ +...+.+||..+++..........+.....++++..+++.++.|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 8888888775432 123689999998765433222111113344577888999888887 4568999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CC-----CcEEEEECCCC
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 648 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~ 648 (1086)
||..+++....-...... .-.+++..+++++++.|+ .+ ..+.+||..++
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999987655443322221 123466667999999988 34 45777877655
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00023 Score=72.18 Aligned_cols=208 Identities=7% Similarity=-0.007 Sum_probs=134.5
Q ss_pred eeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 322 ~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
+.|.|-.+++..++|+|+++.|.++...++.|...|.. |+.+.... +.+ ....-.+++.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~ 80 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD 80 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence 45667777999999999887778888889999999997 77665422 222 256778899999
Q ss_pred CCEEEEEeCCCEEEEEEecCCCccccceEec------cccccEeEEEecCCCCcEEEEEEeCCC-cEEEEeC-CCCceeE
Q 001396 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDK-TIKVWDA-VTGSRTY 473 (1086)
Q Consensus 402 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~d~~~l~l~s~~~d~-~i~iwd~-~~~~~~~ 473 (1086)
+.++++.-.++.+.++++.....+....... ........++|+|+++.++++ .-.+. .|..|+- ..+..+.
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va-~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF-KEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE-EESSSEEEEEEESTTCSSCCE
T ss_pred CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE-ECcCCceEEEEcccccCCcee
Confidence 9877776667889999987655322111111 233456899999999853333 22232 4555551 1122222
Q ss_pred Eee-------cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCC---------CceEEEEEecCCCE
Q 001396 474 SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGRR 537 (1086)
Q Consensus 474 ~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~d~~~ 537 (1086)
.+. .+...+.+++++|. .+++++.....+.+.++|.+.. .+..+.... .....|+|.++|+.
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred eecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence 221 12345678888875 4577778888888999987644 444333332 25689999999986
Q ss_pred EEEEeeCCCCceeEEEEeC
Q 001396 538 LFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~ 556 (1086)
.++ +. .+.++.+..
T Consensus 238 yIv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 238 YIV-SE----PNRFYRFTP 251 (255)
T ss_dssp EEE-ET----TTEEEEEEC
T ss_pred EEE-cC----CceEEEEEe
Confidence 655 32 335666653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00042 Score=76.58 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=154.7
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 408 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 408 (1086)
.-.|.+..+++ +|+++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEe
Confidence 45576766754 34443 336788888876543321 1 223457899999866666555
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 466789999988764221 12222334567899986664 45566667789999976544333333334567888886
Q ss_pred ccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 489 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 489 ~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 43 34455555455 78888888765554444444456789999998888777643 256899999875433333332
Q ss_pred ccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC
Q 001396 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 568 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
.. .....+++. .+..+++-...+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 456777773 344445555678888888777776666653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00053 Score=74.57 Aligned_cols=248 Identities=11% Similarity=-0.022 Sum_probs=153.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
..+|.+..++ .+|+.+. ...|+..++.+.... .+......+..++|.+.++. ++++-...+.|..+++..+..
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence 3445555663 3444443 334777787664322 12223345789999987664 455556678999999876654
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeE
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 551 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 551 (1086)
...+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+...... ...|
T Consensus 108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I 184 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI 184 (349)
T ss_dssp EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence 4433333344566777533 445666667778999999886655544444445678999999777776654311 3678
Q ss_pred EEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001396 552 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 630 (1086)
Q Consensus 552 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 630 (1086)
+..++..... ..+.... ....+.++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+
T Consensus 185 ~r~~~dG~~~-~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 185 EASSMDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEEETTSCSC-EESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred EEEeCCCCCc-EEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence 8888765432 2222111 24678999999877777765 5678999998754433333322 233567777 34555
Q ss_pred EEEEECCCcEEEEECCCCCeeeecc
Q 001396 631 LAVIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 631 l~~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
+++-...+.|..++..++.....+.
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCCeEEEEEccCCCccEEec
Confidence 5555567788888866665555444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00036 Score=77.12 Aligned_cols=247 Identities=11% Similarity=-0.040 Sum_probs=153.9
Q ss_pred EEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE
Q 001396 394 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 473 (1086)
Q Consensus 394 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~ 473 (1086)
.|.+..+ ..+|+.+.. ..|+..++.++.... +......+..++|.+.++. ++++-...+.|..+++..+....
T Consensus 80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555 334544433 458888887654322 2223345789999987664 45566667899999987665444
Q ss_pred EeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 474 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 474 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+.........+++.+. ++.++++-...+.|.+.+++.................++++|.+..|+..... ....|+.
T Consensus 153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r 229 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA 229 (386)
T ss_dssp EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence 33323334456777433 34556666677889988887655444444444567899999988777765431 1367888
Q ss_pred EeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001396 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632 (1086)
Q Consensus 554 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 632 (1086)
+++............. ...+.++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.+++
T Consensus 230 ~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 230 SSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp EETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred EeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence 8876543333222222 4678999998877777665 5678999998754433333322 233567887 3455555
Q ss_pred EEECCCcEEEEECCCCCeeeeccc
Q 001396 633 VIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 633 ~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
+-...+.|..++..++.....+..
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEEC
T ss_pred eeCCCCeEEEEECCCCcceEEEcc
Confidence 556678888888666665555543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.5e-05 Score=74.46 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=124.9
Q ss_pred CCCeeEEEeecCCCEEEEEe-C--CeEEEEEccCceEEEEEcCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001396 796 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 871 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 871 (1086)
..-...+.|++ +.+..+.+ + +.|+.+|+.+++.+....-.... -..+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34466899987 45545444 3 48999999999999887644332 2345554 45666666778999999999999
Q ss_pred eEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eC
Q 001396 872 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 950 (1086)
Q Consensus 872 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 950 (1086)
.+.++..-. .=. .+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-Cce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 999987432 223 444677777766678889999998866544322221 11110 134456655 66655554 57
Q ss_pred CeEEEEEcCCccceeccccC------------CccCEEEEEEeCCCCEEEEEEC
Q 001396 951 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
+.|.+.|.++|+.+..+..+ -..-...++++|+++.|++.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 78999999999987664322 1235688999998877776664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00037 Score=70.65 Aligned_cols=218 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 832 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 832 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
.+.+-...+..++++|++++++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999556677778889999999998 887777642 22457889999999887776677889999987
Q ss_pred CCce-eeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCC---ccceecc------ccCCccCEEEEE
Q 001396 911 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQW------FPISSVPISQAT 979 (1086)
Q Consensus 911 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~---~~~~~~~------~~~h~~~v~~l~ 979 (1086)
.... ..........+..........++++|++..|.++ ......+|.+.. ...+... ...+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 1112222111111222458999999999777764 333344554431 1111111 011345678999
Q ss_pred EeCCC-CEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 980 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 980 fs~dg-~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
|.|.. .+++.......+.++|.. |+.+..+....-.. +.....-.+-.++|+| +|+++++ +.-+.++++.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 99954 455666666788889966 55665555321100 0001123457899999 6775554 77776666643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00011 Score=89.16 Aligned_cols=201 Identities=6% Similarity=-0.029 Sum_probs=115.3
Q ss_pred CCCc-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEecCC-CccccceEeccccccEeEEEecCCCCcEEEEEEeCC-
Q 001396 388 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 458 (1086)
Q Consensus 388 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d- 458 (1086)
+|.. .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4553 78899999 99999997643 2 35999999998 63321 111 12457899999995 3333333
Q ss_pred ----CcEEEEeCCCCcee--EEeec-CCcceEEEeecccCCccEEEEEEc---CCeEEEEEcCCCc-ee--EEe-cCCCC
Q 001396 459 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL 524 (1086)
Q Consensus 459 ----~~i~iwd~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~-~~--~~~-~~~~~ 524 (1086)
..|.++++.++... ..+.. .......+.| ++||++|+..+. ...|.++|+.+.. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898877532 33322 2234455566 557777776653 3468888887752 22 222 22333
Q ss_pred ceEEEEEecCCCEEEEEeeCC-CCceeEEEEeCCCC-eeeeEEecccccCCceEEEEEecCCCEE-EEEECCCc--EEEE
Q 001396 525 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 599 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~iw 599 (1086)
...++.|+ +|+.|+..+... .+...|+.+|+.++ +....+..+. ....+..+.+. ++.| ++...++. |+++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 44444443 366666555432 34668889998763 3222022222 01234455554 4455 44566775 4555
Q ss_pred Ec
Q 001396 600 DM 601 (1086)
Q Consensus 600 d~ 601 (1086)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0011 Score=73.40 Aligned_cols=248 Identities=9% Similarity=-0.035 Sum_probs=154.4
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 479 (1086)
+|+.+. ...|+..++.+..... +......+..++|.+.++. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 4568888887754322 2334557889999987664 4555556788999998652 2233333334
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+..... ....|+..++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677887543 34566666778899999988766555555455567899999977777665421 1356888887654
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 4333333222 5678999999888887765 5678999998765444444332222334567763 344555555678
Q ss_pred cEEEEECCCCCeeeeccccccceeee
Q 001396 639 RIKILETPESNSVDAAGVLSDNLRKL 664 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~~~~~~~v~~~ 664 (1086)
.|..++..+++....+.........+
T Consensus 312 ~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp SEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred eEEEEEcCCCCceEEEecCCCCCceE
Confidence 88888877776665554333333333
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0016 Score=69.70 Aligned_cols=232 Identities=9% Similarity=-0.054 Sum_probs=139.6
Q ss_pred CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eCCCEEEEEEecCC---Cccc
Q 001396 351 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 426 (1086)
Q Consensus 351 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~ 426 (1086)
..|+..|+.+++.... . .....+..++|++++..|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788999887654321 1 123567899999876666555 45688999998762 2111
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC-CeE
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 505 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i 505 (1086)
. .+...-.....+++.+.++. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222245678999876654 4556667889999997654433333333456678888543 33344444333 788
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCC
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 585 (1086)
...+++...........-.....+++++++..|+.+-. ....|..+|..... .+.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCE
Confidence 88887654443333334456789999998888877643 25679999987433 33332211011345677775 344
Q ss_pred EEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 586 QILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44445567788888887776555553
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0037 Score=67.21 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=147.5
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
..+.+|.|.+++. ++++|. .|.| +.....|+. |..... ........+.+++|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE-E
Confidence 4789999988876 566654 4544 333333431 110000 0112345788999986 44444 4
Q ss_pred eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcceEEEee
Q 001396 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCP 487 (1086)
Q Consensus 409 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~ 487 (1086)
+..+.|.. ..+.|+..........+.+.+..+.+.+++. +++.+ .++.|..- ...|+.- .....+...+..+++
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 55664433 3344544332211112345577888877776 45544 46654332 1334332 222345567788887
Q ss_pred cccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001396 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
.+ ++.+++.+...+..+-+|-....-..........+..+++.++++.++.+. ++.+++.+...|+.-..+..
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBC
T ss_pred cC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccC
Confidence 54 555665554333333333211111111223445788899999988776553 44566664333433332221
Q ss_pred c-cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 568 L-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 568 ~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
. ......+..+.+.+++..+++ +.+|.| .+..+.|+.-..+... .....+..+.|.+++ .+++++.+|.|.-++-
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 1 001135888999887665554 456766 4555556554444422 112347889887655 4666677887766553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00045 Score=77.40 Aligned_cols=248 Identities=11% Similarity=0.050 Sum_probs=142.9
Q ss_pred CeeEEEeecC--CCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC---C-eEEEEEcCCc
Q 001396 798 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 870 (1086)
Q Consensus 798 ~v~~l~~s~d--g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 870 (1086)
....++++|+ +..|..+. .+.|+.+|..+++..... ........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 44455554 488999999877765443 3556789999999 77755544321 1 2333333222
Q ss_pred ee-EEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE
Q 001396 871 EV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 948 (1086)
Q Consensus 871 ~~-~~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 948 (1086)
.. ...+. .......+++.| +|.++++-..++.|+.++..++.... ....... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 233456789999 77777666677889999988665411 1111111 1 123479999999966654
Q ss_pred --eCCeEEEEEcC--Cccce--ecccc-----C---------CccCEEEEEE---------eCCCCEEEEEECCCcEEEE
Q 001396 949 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 949 --~d~~i~vwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~s~~~Dg~v~vW 999 (1086)
..+.|..++.. ++... ..+.. + .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789888865 23211 01000 0 1234677999 6777777766667789999
Q ss_pred EcCCCceeeeecccc-----ccC--CCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1000 EASNLEVQCRILSTA-----YLR--PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1000 d~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
+. +|......-... +.. ......-..|..++++|.++.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 564432221110 000 00001123578899995455655555556778887763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00068 Score=75.95 Aligned_cols=246 Identities=12% Similarity=0.039 Sum_probs=140.4
Q ss_pred CeeEEEeec-CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCCc
Q 001396 798 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS 870 (1086)
Q Consensus 798 ~v~~l~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 870 (1086)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|.++.. ++ .+...+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456899998 455566665 4789999998766544433 556688999999 7875555544 22 3444443 33
Q ss_pred eeE--EEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE
Q 001396 871 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 947 (1086)
Q Consensus 871 ~~~--~~l~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 947 (1086)
... ..+.. ......++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 22221 23456789999 77777776678889999998754321 1121111 24678999999996665
Q ss_pred E--eCCeEEEEEcCC--ccc--eecccc-----C---------CccCEE-EEEEe--------CCCCEEEEEECCCcEEE
Q 001396 948 V--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 998 (1086)
Q Consensus 948 ~--~d~~i~vwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~s~~~Dg~v~v 998 (1086)
+ ..+.|..++... +.. +..+.. + .-.... .++.. ++|.++++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567888887653 211 111000 0 011223 45553 34555555555678888
Q ss_pred EEcCCCceeeeecccc--ccC-----CCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccC
Q 001396 999 HEASNLEVQCRILSTA--YLR-----PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 999 Wd~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
++ ..|.......... ... ......-..|..++++|+++.++++-...+.|+.+++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565443322100 000 00001123678999998444555554455678877653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.03 E-value=0.006 Score=65.00 Aligned_cols=239 Identities=9% Similarity=-0.021 Sum_probs=146.7
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee-EEeecCCcce
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 482 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v 482 (1086)
+|+.+ ....|+..++.+...... .+......+.+++|.+.++. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEE-ccCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 34444 345689999887641111 11122345678999987664 5566667789999998766432 2222222345
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 562 (1086)
..+++.+. ++.++++-...+.|.+++++.................+++.|.+..|+..... ....|+..++.... .
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~ 157 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-R 157 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-C
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-e
Confidence 56777432 44566666778899999987655444444455567899999977776665421 24678888876433 2
Q ss_pred eEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEE
Q 001396 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 641 (1086)
Q Consensus 563 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 641 (1086)
..+.... -...+.+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 3332111 24678999999877777765 567899999875433333321 123346777753 34555555678888
Q ss_pred EEECCCCCeeeecc
Q 001396 642 ILETPESNSVDAAG 655 (1086)
Q Consensus 642 iw~~~~~~~~~~~~ 655 (1086)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 88887776554443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0063 Score=67.33 Aligned_cols=250 Identities=8% Similarity=-0.057 Sum_probs=150.0
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~ 410 (1086)
.|.+..+.. +|+++ . ...|+..++....... +......+..++|++.+..|..+ ..
T Consensus 76 ~C~~~~~~~-~ll~~-~-~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFT-N-RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEE-E-TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEe-c-cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344443333 34443 2 3778888887654332 11234678899999876666655 45
Q ss_pred CCEEEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 411 KHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
.+.|+.+++.+..... ....+.........+++.+.++. ++++-...+.|.+.+++.......+.........+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 6789999987632110 11122223456788999886554 556666678999999876554444443445578888865
Q ss_pred cCCccEEEEEEc-CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001396 490 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 568 (1086)
Q Consensus 490 ~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 568 (1086)
. ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-. +...|..+|+............
T Consensus 212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 3 3334444323 478888888765555444444457789999998888887643 2567999998754433333321
Q ss_pred cccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11345566663 23344445567788888877777666654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0023 Score=71.60 Aligned_cols=239 Identities=13% Similarity=0.077 Sum_probs=134.9
Q ss_pred CceEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE
Q 001396 330 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 408 (1086)
Q Consensus 330 ~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 408 (1086)
....++++| ++..|.++-. .+.|..+|..++.... +.........++|+++|++|.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 568899998 4545455443 3889999988765432 11234568899999999966666
Q ss_pred eCC----C-EEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-CCcc
Q 001396 409 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 481 (1086)
Q Consensus 409 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~ 481 (1086)
... . .+.+.+. .+.... ...+. .......++++| +|. ++++-..++.|..++..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 542 2 3433443 333221 11222 123467889999 565 666666788999999887654222221 2234
Q ss_pred eEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCce----eEEecCC---------------CCceE-EEEEe--------
Q 001396 482 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS-------- 532 (1086)
Q Consensus 482 v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s-------- 532 (1086)
...+++++ ++. ++++-...+.|..++.+.... ...+... -.... .++..
T Consensus 272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 66788854 666 455556778899988764311 1111111 00122 45553
Q ss_pred cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc---------c------ccCCceEEEEEecCCCEEEE-EECCCcE
Q 001396 533 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTAKDQILA-AGDDHVI 596 (1086)
Q Consensus 533 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~~~~~~l~~-~s~dg~i 596 (1086)
++|.+.++-.. ...|+.++ .+|... .+.+. . ..-.....++++|++..|+. -..++.|
T Consensus 350 ~~g~lyvaD~~----n~~I~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI 423 (430)
T 3tc9_A 350 DEYDFYFCDRE----NHCIRILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423 (430)
T ss_dssp CCEEEEEEEGG----GTEEEEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred CCCeEEEEECC----CcEEEEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 23444444322 55788888 345433 33321 0 00125788999985444444 4456777
Q ss_pred EEEEcC
Q 001396 597 KIWDMN 602 (1086)
Q Consensus 597 ~iwd~~ 602 (1086)
+.++++
T Consensus 424 r~i~~e 429 (430)
T 3tc9_A 424 RKIGYE 429 (430)
T ss_dssp EEEEEC
T ss_pred EEEccC
Confidence 777654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.00 E-value=0.006 Score=64.98 Aligned_cols=232 Identities=12% Similarity=0.004 Sum_probs=141.8
Q ss_pred cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCccccc
Q 001396 350 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 428 (1086)
Q Consensus 350 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~ 428 (1086)
...|+..|+.......... .. ....+.+++|.+.+..|..+ ...+.|..+++.++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 3678999987764211100 11 12356789999865555544 5667899999887642211
Q ss_pred eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEE--cCCeEE
Q 001396 429 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 506 (1086)
Q Consensus 429 ~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~ 506 (1086)
.+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.+. ++ .|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g-~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SG-FMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GT-EEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CC-EEEEEecCCCCEEE
Confidence 12222345678999876664 4556666789999997654333333334455678888653 23 444444 357888
Q ss_pred EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE
Q 001396 507 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 586 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 586 (1086)
..+++...........-.....+++++++..|+.+-. ....|..+|+..........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887754444333333446789999998888877643 25689999987543322232222 4566777753 334
Q ss_pred EEEEECCCcEEEEEcCCCeeEEEEc
Q 001396 587 ILAAGDDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+++-...+.|..++..+|+....+.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCeEEEEECCCCCceEEEe
Confidence 4444567889999988877666654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0063 Score=73.05 Aligned_cols=238 Identities=10% Similarity=-0.027 Sum_probs=147.5
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 479 (1086)
+|+.+ ....|+..++....... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44444 33457888877654322 2334556789999986664 5556666788999998753 2233333234
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
.....|++.+. .+.++++-...+.|.+.+++.................|++.|.+.+|+..... ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45667777543 33566666778899999998766555555455568899999987777665421 1357888888754
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 637 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~d 637 (1086)
.....+.... .....|++++.+..|+.+. ..+.|...++........+...........|++. +..|+.+ ...
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4433333322 5788999998888887765 4567999998765554444433222333456654 3345444 455
Q ss_pred CcEEEEECCCCCeeeecc
Q 001396 638 NRIKILETPESNSVDAAG 655 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~ 655 (1086)
+.|...+..++..+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 778888877765555443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0022 Score=71.73 Aligned_cols=239 Identities=15% Similarity=0.083 Sum_probs=136.3
Q ss_pred CceEeeecCC--CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 330 SPMSMDFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 330 ~V~~~~~spd--g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
....++|+|+ +..|.++-.. +.|+.+|..++.... +.+.......++|+++|+++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyVa 198 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVVV 198 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEEE
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEEE
Confidence 5679999995 3334554333 889999998776543 2223456889999999994444
Q ss_pred EeCC---C-EEEEEEecCCCccccceEeccccccEeEEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec--CCc
Q 001396 408 AYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGA 480 (1086)
Q Consensus 408 ~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~ 480 (1086)
.... . .+...+...+. .. ...+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+.. ...
T Consensus 199 d~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 199 DDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp ECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred cCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 4311 2 23333433221 11 01111 233456789999 565 566666678899999887876333321 122
Q ss_pred ceEEEeecccCCcc-EEEEEEcCCeEEEEEcCCCce----eEEecCC---------------CCceEEEEE---------
Q 001396 481 PVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY--------- 531 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~--------- 531 (1086)
.-..+++++ ++. ++++-...+.|+.++++.... ...+... -.....+++
T Consensus 274 ~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 274 SNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp SCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 234577754 566 455556678899988763211 1111111 123567888
Q ss_pred ecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc---------------cCCceEEEEEe-cCCCEEEEEECCCc
Q 001396 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDHV 595 (1086)
Q Consensus 532 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~s~dg~ 595 (1086)
.++|.+.++-.. ...|+.++. +|.. .++.+... .-.....++++ +++..+++-..++.
T Consensus 352 d~~g~lyvaD~~----n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 425 (433)
T 4hw6_A 352 EDEYDFYFCDRD----SHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR 425 (433)
T ss_dssp SCCEEEEEEETT----TTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred CCCCcEEEEECC----CCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCE
Confidence 566665555432 567888885 5543 34333210 11346788888 45544444445667
Q ss_pred EEEEEcC
Q 001396 596 IKIWDMN 602 (1086)
Q Consensus 596 i~iwd~~ 602 (1086)
|+.++++
T Consensus 426 Ir~i~~e 432 (433)
T 4hw6_A 426 VRKIAPE 432 (433)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 7777654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.013 Score=70.35 Aligned_cols=214 Identities=10% Similarity=-0.043 Sum_probs=131.6
Q ss_pred CccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCcc-ccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 390 GVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
...+..|+|.+.+..|... ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4567899999865555544 55678999998763210 011122334456778999988875 56666778899999977
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
.......+.........|++.+. .+.++++-... +.|...+++.................|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 54433333334456788888654 23344444333 78888888766555555545567889999988888877643
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEc
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTID 611 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 611 (1086)
+...|...++............. ......+|++. +.+|+.+. ..+.|...|..+|+.+..+.
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 25679999987554444433311 11234456653 34555544 56778888877776665553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0053 Score=64.53 Aligned_cols=195 Identities=11% Similarity=0.148 Sum_probs=124.5
Q ss_pred CCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCC---CCC---EEEEEe-C--CCeEEEEEcC--CceeEEE
Q 001396 808 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISK 875 (1086)
Q Consensus 808 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~-~--dg~v~iwd~~--~~~~~~~ 875 (1086)
..+++... .+.+.+||+ +|+.++.+.. +.++.+.+-|. +++ ++++.. . +++|.+|++. +++ +..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34444333 578999999 8999888864 56777776651 122 233333 3 5799999773 443 444
Q ss_pred ecc------cc-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEECCC---CceeeeeeeeccCCCccCCCCceEEEEecC
Q 001396 876 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD 941 (1086)
Q Consensus 876 l~~------h~-~~v~~l~~--spd-g~-~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 941 (1086)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +. ...+.++.+.-. +.+..++..+.
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEETT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcCC
Confidence 421 11 56777888 774 44 677788899999999843 22 222333333222 25789999999
Q ss_pred CCEEEEEeC-CeEEEEEcC-----CccceeccccCC-ccCEEEEEE--eCCCC-EEEEEE-CCCcEEEEEcC-CCceeee
Q 001396 942 QTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1009 (1086)
Q Consensus 942 g~~l~~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~s~~-~Dg~v~vWd~~-~~~~~~~ 1009 (1086)
...|.++.+ ..|..|+.+ +++.+..+-.++ ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+.+
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 888888754 445555644 344454332344 347888888 56666 666666 56799999997 7888888
Q ss_pred ec
Q 001396 1010 IL 1011 (1086)
Q Consensus 1010 ~~ 1011 (1086)
|.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.012 Score=65.71 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=143.8
Q ss_pred CceEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE-------CCC
Q 001396 330 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD 401 (1086)
Q Consensus 330 ~V~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 401 (1086)
....|+|+| ++..|+++....+.|++.|..++........ -.+.......++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence 467899999 4555666666567799999888765532100 0112246899999 999
Q ss_pred CCEEEEEeCCC-------EEEEEEecC-CCccc-c-ceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC----
Q 001396 402 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---- 467 (1086)
Q Consensus 402 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~---- 467 (1086)
|++|.++...+ .|.+.+... +.... . ...+... .....++++|++.. ++++-..++.|..+|+.
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99776665443 366666444 22210 0 0112211 23457889996664 56666778889999987
Q ss_pred ---CCce-----------eEE-ee-cCCcceEEEeecccCCccE-EEEEEcCCeEEEEEcCCCcee----EEecCC---C
Q 001396 468 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G 523 (1086)
Q Consensus 468 ---~~~~-----------~~~-~~-~h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~----~~~~~~---~ 523 (1086)
++.. ... +. +.......++|++ ++.+ +++-+....|+.++.+..... ..+... .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5654 112 21 1234457888854 6664 555567788998766543211 111110 0
Q ss_pred ------------CceE-EEEEe-------cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-------------
Q 001396 524 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------------- 570 (1086)
Q Consensus 524 ------------~~i~-~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------------- 570 (1086)
.... .++.. ++|.+.++-.. ...|+.++ .+| .+.++.+...
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCC-CEEEEecccccccccCccccccC
Confidence 1233 45554 44555554332 66899998 455 3445544210
Q ss_pred --------cCCceEEEEEecC-CCEEEEEECCCcEEEEEcCCCeeEE
Q 001396 571 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 571 --------~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~ 608 (1086)
.-.....++++++ +..+++=..+..|+.++++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1134668888886 5544555567788888877655443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.007 Score=67.62 Aligned_cols=250 Identities=11% Similarity=0.112 Sum_probs=141.1
Q ss_pred cEEEEEECC-CCCEEEEE-eCCCEEEEEEecCCCccccceEec-cccccEeEEEe-------cCCCCcEEEEEEeCCC--
Q 001396 392 SVNRVVWSP-DGSLLGVA-YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 459 (1086)
Q Consensus 392 ~V~~l~~sp-dg~~las~-~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~-------s~d~~~l~l~s~~~d~-- 459 (1086)
....|+|+| ++..|..+ ...+.|++.|.+++.... +.... ........++| +++|+. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 45555555 444678888888765332 11111 12235889999 999984 44443332
Q ss_pred -----cEEEEeCCC-Ccee-----EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcC-------CCce------
Q 001396 460 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 515 (1086)
Q Consensus 460 -----~i~iwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------~~~~------ 515 (1086)
.|.+.+... |... ..+... .....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366676443 2321 223221 12345566442 45566777788899999987 4432
Q ss_pred -----e-EEec-CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC--CCCee--eeEEeccc------------ccC
Q 001396 516 -----R-VDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAI--KRTYQGLQ------------LQH 572 (1086)
Q Consensus 516 -----~-~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~~------------~~~ 572 (1086)
. ..+. ........++|+|+|+.|+.+-. +...|+.++. .++.. ...+.+.. ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345678999999997665532 2567888554 33332 12333320 001
Q ss_pred CceE-EEEEe-------cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC----------------------CCCCCceE
Q 001396 573 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 622 (1086)
Q Consensus 573 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 622 (1086)
.... .++.. +++..+++-..++.|+.++ .+|. +.++.+.+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4555666666788899998 4554 33432211 01224578
Q ss_pred EEecC-CCEEEEEECCCcEEEEECCCCCee
Q 001396 623 CFNKN-GTLLAVIANENRIKILETPESNSV 651 (1086)
Q Consensus 623 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~ 651 (1086)
+++++ |.++++=..+..|+.++++.....
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 99986 666665566788888888765443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0063 Score=63.92 Aligned_cols=193 Identities=12% Similarity=0.135 Sum_probs=120.6
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeeccc--CCcc---EEEE-EEc--CCeEEEEEcCCCc-eeEEecC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---FIFS-ISV--DGKIKAWLYDSLG-ARVDYDA 521 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s-~s~--dg~i~vwd~~~~~-~~~~~~~ 521 (1086)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+.+. -+|+ ++++ .-. +++|++|+++... .......
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666788999998 9999988864 55666655431 0111 2233 333 5789999875322 2333311
Q ss_pred ------CC-CceEEEEE--ecC-CC-EEEEEeeCCCCceeEEEEeC-------CCCeeeeEEecccccCCceEEEEEecC
Q 001396 522 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 583 (1086)
Q Consensus 522 ------~~-~~i~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~ 583 (1086)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45667777 674 44 3444433 467878777 234566777653 47889999999
Q ss_pred CCEEEEEECCCcEEEEEcC-----CCeeEEEEcCCCCCCCCceEEE--ecCCC-EEEEEE-CCCcEEEEECC-CCCeeee
Q 001396 584 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 653 (1086)
Q Consensus 584 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 653 (1086)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999777777755 3455555533222224677777 45555 566665 56799999996 4444444
Q ss_pred c
Q 001396 654 A 654 (1086)
Q Consensus 654 ~ 654 (1086)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00021 Score=85.52 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=136.3
Q ss_pred CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC----CceeEEeecCCcceEEEe
Q 001396 411 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 486 (1086)
Q Consensus 411 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~ 486 (1086)
.+.|++.++.+.+.... ......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~----~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECC----SCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceee----eccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 35678888776543321 122345678999987764 444445567899999875 222222211122344566
Q ss_pred ecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001396 487 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 566 (1086)
Q Consensus 487 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 566 (1086)
+.+. ++.++++-...+.|.++++........+.........++++|.+.+|+..... ..+.|+.+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence 6432 34455665667889999887655444444333456788999977766654321 12568887765432 22222
Q ss_pred cccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEEC
Q 001396 567 GLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 567 ~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
... ....+.|+|+|++..|+.+. ..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 24567899999877666654 567899999875443333332222223456777654 44455556688999998
Q ss_pred CCCCeeeeccc
Q 001396 646 PESNSVDAAGV 656 (1086)
Q Consensus 646 ~~~~~~~~~~~ 656 (1086)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 77766665543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.014 Score=63.34 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=121.2
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceE--EEEEc---CCCCCeEEEEEcCCC----CCEEEEEeCC-----CeEE
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STIL 863 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d----~~~lasg~~d-----g~v~ 863 (1086)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 45689999999977776679999998 4432 22222 1235678999999 5 4444443332 6788
Q ss_pred EEEcCCce-----e-EEEec---cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCcee------
Q 001396 864 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 915 (1086)
Q Consensus 864 iwd~~~~~-----~-~~~l~---~h~~~v~~l~~spdg~~l~s~s~d-------------g~i~iwd~~~~~~~------ 915 (1086)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 22233 111123579999999877775432 3444444432 100
Q ss_pred -----eeeeeeccCCCccCCCCceEEEEec-CCCEEEE-EeCCeE------EEEEcCCcc------------------ce
Q 001396 916 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL 964 (1086)
Q Consensus 916 -----~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~-~~d~~i------~vwd~~~~~------------------~~ 964 (1086)
...... .++. ....++|+| +|.+.++ ...+.+ .|.-+..+. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 0111 246789999 6776666 222221 233333332 11
Q ss_pred eccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeee-ccccccCCCCccCcccceEEEECCCCCCEEEEE
Q 001396 965 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1043 (1086)
Q Consensus 965 ~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 1043 (1086)
..+ .+......++| .+|.++++....+.|...+++........ ....++. ...++..+++.| ||.++++.
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-----~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-----GFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-----SSCCEEEEEECT-TSCEEEEE
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-----cCCCeeEEEECC-CCcEEEEE
Confidence 111 12335677888 56776666666677777777654311000 0001111 113567888998 66665554
Q ss_pred e
Q 001396 1044 L 1044 (1086)
Q Consensus 1044 ~ 1044 (1086)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.078 Score=56.73 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=150.2
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
+.-.+|..+ ++|.-. ..++.|+|+++.+.++.+.+ ..+|..=.|-.+ +.|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEEc-CC
Confidence 345677776 566654 58899999999988876442 245666666533 4555554 44
Q ss_pred EEEEEEecCCCccccceEecccc----ccEeEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeecCCcce
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~v~~s~d~~~l~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
.|+-|++.+...... .+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.+.||.+..
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976433222 344443 367778889999963 33332 3467889996654 457788998877
Q ss_pred EEEeecccCCcc-EEEEEEcC---CeEEEEEcCCC---ce-----eEEecC----CCCceEEEEEecCCCEEEEEeeCCC
Q 001396 483 YSLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 483 ~~~~~~~~~~~~-~l~s~s~d---g~i~vwd~~~~---~~-----~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
..+.+....... ++..+... +.+++-++... .. ...+.. ...-..++..++.-..++..+.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--- 278 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence 776654333222 33333332 78999988643 11 111111 1223457788888777777765
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
-|.|++||+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred -CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 7789999999999887766544 566666666555566666666666555554433
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0056 Score=63.71 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=124.3
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEE-EcC----CC--CCeEEEEE---cCCCCCEEEEEe---------
Q 001396 799 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGM--------- 857 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~--------- 857 (1086)
-.+++|.+....+..++ .++|..|+...+..... +.. .. ..+..+.+ .| +++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence 34788988666666666 79999999986644333 222 11 13578999 68 688888644
Q ss_pred ----CCCeEEEEEcC---CceeEEEec--ccc-----------CCeEEEEEeCCCCEEEEEeCC-CcEEEEECCCCceee
Q 001396 858 ----DDSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQT 916 (1086)
Q Consensus 858 ----~dg~v~iwd~~---~~~~~~~l~--~h~-----------~~v~~l~~spdg~~l~s~s~d-g~i~iwd~~~~~~~~ 916 (1086)
.+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+......
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 26789999999 777654433 211 247889999999999998877 766655555432211
Q ss_pred eeeeeccCCCccCCCCceEEEEecCCCEEEEE-eCCeEEEEEcCCccc--eeccccCC---ccCEEEE-EEeCCCCE-EE
Q 001396 917 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-VF 988 (1086)
Q Consensus 917 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l~ 988 (1086)
..+....... ......|++.|||..|++. ..+.|..+|+.+... +..-..+. -.....+ .--.+|+. |+
T Consensus 174 -~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 174 -FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp -EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred -eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 1112211111 1247799999999988883 488899999885433 21100021 1233443 33347777 55
Q ss_pred EEECCCcEEEEEcCC
Q 001396 989 TSFVDGTLSIHEASN 1003 (1086)
Q Consensus 989 s~~~Dg~v~vWd~~~ 1003 (1086)
+.+..+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 555566666665554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.018 Score=62.30 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=125.7
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCce-EEEEEc---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CeEE
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STIL 863 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v~ 863 (1086)
....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 46789999999977776689999987 4454 222221 12356889999993 3544444332 3 5777
Q ss_pred EEEcCCc-------eeE-EEecc-ccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCcee------
Q 001396 864 IYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 915 (1086)
Q Consensus 864 iwd~~~~-------~~~-~~l~~-h~~~v~~l~~spdg~~l~s~s~d-------------g~i~iwd~~~~~~~------ 915 (1086)
.|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+.. ..
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf~ 187 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPFP 187 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSST
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCCC
Confidence 8877654 111 22321 11124679999999888875432 33444444321 00
Q ss_pred eeeeeeccCCCccCCCCceEEEEec-CCCEEEE--EeCC--eEEEEEcCCcc------------------ceeccccCCc
Q 001396 916 TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHET--HLAIYEAEELT------------------CLKQWFPISS 972 (1086)
Q Consensus 916 ~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~--~~d~--~i~vwd~~~~~------------------~~~~~~~~h~ 972 (1086)
...... .++. ....++|+| +|.+.++ +.+. .|.+.. .|. .+..+.. ..
T Consensus 188 ~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~ 258 (354)
T 3a9g_A 188 NSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-ET 258 (354)
T ss_dssp TCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-CC
T ss_pred CCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-CC
Confidence 000111 1111 256899999 6776666 2222 243332 222 1111101 13
Q ss_pred cCEEEEEEe-------CCCCEEEEEECCCcEEEEEcCCC-ceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001396 973 VPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1044 (1086)
Q Consensus 973 ~~v~~l~fs-------~dg~~l~s~~~Dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 1044 (1086)
.....++|. .+|.++++....+.|...+++.. ....... .+.. ...++..+++.| |+.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEEe
Confidence 467888883 57877777666778888888753 3321111 1111 123567899999 677666654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.13 Score=55.15 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=153.5
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccc
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 879 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 879 (1086)
+.-.+|..+.+|.-...+++|+|+++...+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 566788888888888889999999999988887643 3555556653 44677665 66899999974 3566666655
Q ss_pred c----CCeEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCC----E
Q 001396 880 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT----R 944 (1086)
Q Consensus 880 ~----~~v~~l~~spdg~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~----~ 944 (1086)
. ..|..-..++|.++++..|- .|.+.+|+++.+. -+..+||.. .-..+-.+|. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST 214 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCce
Confidence 3 45777888999999886542 4678899998743 455666653 2223333332 2
Q ss_pred EEE-Ee----CCeEEEEEcCCc---cc------eeccccC--CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee
Q 001396 945 FLL-VH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 945 l~~-~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~ 1008 (1086)
|++ +. .+.++|.++... .. +...++. -..-..++..|+.-..+...+.-|.|.++|+.+|.++.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 333 32 268999998543 11 1111111 25566788889888888888899999999999999987
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1009 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+-+ -+.+.+.. -+.+. +..-++.....|.|.--.+.+.
T Consensus 295 ~nr--------Is~~~iF~--t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 295 MNR--------ISGETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEE--------CCSSCEEE--EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred eec--------ccCCceEE--ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 766 11333442 33333 2445666668888877776543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0004 Score=83.06 Aligned_cols=205 Identities=9% Similarity=0.013 Sum_probs=124.1
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccC----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 870 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 870 (1086)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999887777775 47899999875 12211221122334678888635666666566789999998865
Q ss_pred eeEEEeccccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE
Q 001396 871 EVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 948 (1086)
Q Consensus 871 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 948 (1086)
.....+.........|++.|++.+|+.+.. .+.|.+.+++...... .+.. . . .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~--~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS--S-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC--C-C---CCccEEEEeccCCEEEEE
Confidence 443333333345678999997655554432 2678877776532111 1111 1 1 135689999987766654
Q ss_pred --eCCeEEEEEcCCccceecccc--CCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 949 --HETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 949 --~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
..+.|.++++.... ...+.. ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 55689999986432 222222 11223345566544 455555566889999998898877665
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.078 Score=57.32 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=117.1
Q ss_pred CCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC---CCEE
Q 001396 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL 405 (1086)
Q Consensus 329 ~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 405 (1086)
...+.++|.|||+ ++++ ..+|.|.+++ +++......+. ...........|+|+|| +.+|
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCEE
Confidence 3678999999997 4555 4569999998 44422110000 12223457889999998 5555
Q ss_pred EEEeC-C-----CEEEEEEecCCCcc--ccce-Eec---cccccEeEEEecCCCCcEEEEEEeC-------------CCc
Q 001396 406 GVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITCGD-------------DKT 460 (1086)
Q Consensus 406 as~~~-d-----~~i~iwd~~~~~~~--~~~~-~~~---~h~~~v~~v~~s~d~~~l~l~s~~~-------------d~~ 460 (1086)
.++.. . +.|..|+...+..- +.+. .+. +.......++|.|||. ++++.+. .+.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~G~~~~~~~~~d~~~~~g~ 170 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTTGEVYERELAQDLASLGGK 170 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEECCCTTCGGGGGCTTCSSSE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEECCCCCCccccCCCCCceE
Confidence 55433 2 57888888754211 1111 122 1112346899999996 4554332 245
Q ss_pred EEEEeCCCC------------ceeEE-eecCCcceEEEeecccCCccEEEEEEcCCeE------EEEEcCCCc-------
Q 001396 461 IKVWDAVTG------------SRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKI------KAWLYDSLG------- 514 (1086)
Q Consensus 461 i~iwd~~~~------------~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i------~vwd~~~~~------- 514 (1086)
|.-++.... ..... ..++.. ...++|++. ++.++++-...+.+ .+.-+..+.
T Consensus 171 I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~-~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~ 248 (352)
T 2ism_A 171 ILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPK-TGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRV 248 (352)
T ss_dssp EEEECTTSSBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTT-TCCEEEEEECC------CCCEEEEECTTCBCCTTTC
T ss_pred EEEEcCCCCCCCCCcccCCCCCCccEEEEcCCC-cccEEEECC-CCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcc
Confidence 666665420 11111 123322 445667542 34444443333321 122222221
Q ss_pred -----------eeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee------eeEEecccccCCceEE
Q 001396 515 -----------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSV 577 (1086)
Q Consensus 515 -----------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~~~~~v~~ 577 (1086)
....+ .+......++| .+|..+++... .+.|...++..... ...+... ...+..
T Consensus 249 ~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~----~~~v~~v~~~~~~~~~~~~~~~~~~~~---~~rp~~ 319 (352)
T 2ism_A 249 VGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLR----GQALLRLVLEGERGRWRVLRVETALSG---FGRLRE 319 (352)
T ss_dssp CSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETT----TTEEEEEEEEEETTEEEEEEEEEEEES---SCCEEE
T ss_pred cCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECC----CCEEEEEEECCCCcceeecchheeccc---CCCeeE
Confidence 11122 12224566777 56665554332 34566666553321 1222211 257889
Q ss_pred EEEecCCCEEEEEE
Q 001396 578 VHFDTAKDQILAAG 591 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s 591 (1086)
+++.|||...++..
T Consensus 320 v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 320 VQVGPDGALYVTTS 333 (352)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCcEEEEEe
Confidence 99999987666643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.14 Score=55.37 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=119.6
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC---CCE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL 404 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 404 (1086)
-...+.++|.|||+ |+++ ..+|.|.++| .+|+ .....+. +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 34688999999997 4554 5559999997 4454 1110100 01223456889999998 555
Q ss_pred EEEEeC----C----CEEEEEEecCCC-cc---ccc-eEec-cccccEeEEEecCCCCcEEEEEEeC-------------
Q 001396 405 LGVAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD------------- 457 (1086)
Q Consensus 405 las~~~----d----~~i~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~------------- 457 (1086)
|.++.. + ..|..|+...+. .+ +.+ ..+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554432 3 567888876541 11 111 0111 1111346799999997 5555332
Q ss_pred CCcEEEEeCCCCc----------eeEEeecCCcceEEEeecccCCccEEEEEEcCC---eEEEEEcCCCc----------
Q 001396 458 DKTIKVWDAVTGS----------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG---------- 514 (1086)
Q Consensus 458 d~~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~---------- 514 (1086)
.+.|...+.. |+ .+.. .++.. ...++|.+. ++.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 2456556643 32 1211 23433 345677542 344444432221 13222 1111
Q ss_pred --------eeEEecCCCCceEEEEEe-------cCCCEEEEEeeCCCCceeEEEEeCCCC-eee--eEEecccccCCceE
Q 001396 515 --------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVS 576 (1086)
Q Consensus 515 --------~~~~~~~~~~~i~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~ 576 (1086)
....+.........++|. .+|+++++... .+.|...++... +.. ..+... ....+.
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~ 315 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLR 315 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCee
Confidence 122221223356778883 56766655432 456777777643 222 122211 125788
Q ss_pred EEEEecCCCEEEEEE
Q 001396 577 VVHFDTAKDQILAAG 591 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s 591 (1086)
.+++.|||...++..
T Consensus 316 ~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 316 DVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEe
Confidence 999999986555543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.03 Score=60.66 Aligned_cols=237 Identities=10% Similarity=0.071 Sum_probs=126.9
Q ss_pred CeeEEEeecCCC-EEEEEeCCeEEEEEccCceEEEEEc-------CCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001396 798 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 859 (1086)
Q Consensus 798 ~v~~l~~s~dg~-~l~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---d~~~lasg~~-------d 859 (1086)
....|+|.|||+ ++++-..|.|++++.. ++....+. ........++|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 7766667999999853 33221111 12345689999993 3544444322 2
Q ss_pred CeEEEEEcCCc-------eeE-EEec-----cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCc
Q 001396 860 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 913 (1086)
Q Consensus 860 g~v~iwd~~~~-------~~~-~~l~-----~h~~~v~~l~~spdg~~l~s~s~d-------------g~i~iwd~~~~~ 913 (1086)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.++++.+.. |.|.-.+.+..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~- 174 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE- 174 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence 35666666532 111 1222 132 3569999999777776542 34555555431
Q ss_pred ee-----------eeeeeeccCCCccCCCCceEEEEec-CCCEEEE--EeCCeEEEEEcCCccce---------------
Q 001396 914 IQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL--VHETHLAIYEAEELTCL--------------- 964 (1086)
Q Consensus 914 ~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~--~~d~~i~vwd~~~~~~~--------------- 964 (1086)
.. ...... .++. ....++|.| +|.+.++ +.++.=.|.-+..+..-
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 00 000111 1111 267899999 6666665 22222222222221110
Q ss_pred ---------eccc-----cCCccCEEEEEEeC-------CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccC
Q 001396 965 ---------KQWF-----PISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1023 (1086)
Q Consensus 965 ---------~~~~-----~~h~~~v~~l~fs~-------dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1086)
.... -.+...+..++|.. +|.++++.-..+.|...+++.+....... .+. ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CC
Confidence 0000 01234577888864 57777777677888888888665443322 111 11
Q ss_pred cccceEEEECCCCCCEEEEEe-CCCcEEEEcc
Q 001396 1024 HVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1054 (1086)
Q Consensus 1024 ~~~~~~~~~~p~~~~~l~~~~-~dg~v~vw~~ 1054 (1086)
...+..+++.| ||.++++.. .+|. ||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g~--I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSGE--LLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTEE--EEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCCE--EEEE
Confidence 23577899999 677666543 3454 4444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.088 Score=54.79 Aligned_cols=171 Identities=8% Similarity=0.034 Sum_probs=109.4
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE---CCC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPD 401 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---spd 401 (1086)
+...---.+++|.+....++++.-..++|..||...+..... .+. ++.. -......+..|.| .|+
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNS 76 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSC
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCC
Confidence 333445668899886655666666789999999986654321 110 0000 0011224678999 688
Q ss_pred CCEEEEEe-------------CCCEEEEEEec---CCCccccceEecccc-----------ccEeEEEecCCCCcEEEEE
Q 001396 402 GSLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVIT 454 (1086)
Q Consensus 402 g~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~v~~s~d~~~l~l~s 454 (1086)
++++++.. .+..|..+|+. +++.+... .+.... .....++..++|+ ..++
T Consensus 77 grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt 153 (334)
T 2p9w_A 77 KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVA 153 (334)
T ss_dssp CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEE
T ss_pred CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEe
Confidence 88887643 25779999999 77654321 222211 2488999999999 7888
Q ss_pred EeCC-CcEEEEeCCCCceeEEeecC------CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCC
Q 001396 455 CGDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 513 (1086)
Q Consensus 455 ~~~d-~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 513 (1086)
++.- +.|...+.. |+.+..+... ....+.|+++| ++..|++....|.|..+|+...
T Consensus 154 ~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 154 FALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 8888 888888744 4433333111 12255778854 6677877766999999998853
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.011 Score=63.35 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=82.4
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 872 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---- 872 (1086)
....+.+|..++++.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 445677899999999999999998754444454433 23688999999 999999876 56799988873320
Q ss_pred --------EEEecc------ccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCC
Q 001396 873 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 912 (1086)
Q Consensus 873 --------~~~l~~------h~~~v~~l~~spd---g~~l~s~s~dg~i~iwd~~~~ 912 (1086)
...+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 112221 2467999999995 468999999999999999873
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.026 Score=59.68 Aligned_cols=235 Identities=11% Similarity=-0.015 Sum_probs=119.7
Q ss_pred CCCEEEEEe-CC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCC
Q 001396 401 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 469 (1086)
Q Consensus 401 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~ 469 (1086)
++..++.|+ .+ ..+.+||..+++-.. ...+...... ..+...+++ +++.|+.+ ..+.+||..++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~--~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRY--VASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBS--CEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhcc--ccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666665 32 358889988764222 1111111111 112223455 56666654 46899998887
Q ss_pred c---eeEE--eecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 470 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 470 ~---~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
+ -... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3222 1111111112222 45667777654 3578888776553332222222221222223677777
Q ss_pred EEeeCCC-CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCC
Q 001396 540 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 613 (1086)
Q Consensus 540 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~ 613 (1086)
.|+.++. ....+.+||+.+.+....-.... .......+. -++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7665332 13468999998876544321111 111122222 245566666643 46899999988765443222
Q ss_pred CCCCCCceEEEecCCCEEEEEECC-----CcEEEEECCCCC
Q 001396 614 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 649 (1086)
Q Consensus 614 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~ 649 (1086)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 21 12222333367777777655 357788887664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.031 Score=59.14 Aligned_cols=195 Identities=9% Similarity=-0.052 Sum_probs=99.7
Q ss_pred CCCEEEEEeCC-----CEEEEEEecCCC---ccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCC
Q 001396 401 DGSLLGVAYSK-----HIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAV 467 (1086)
Q Consensus 401 dg~~las~~~d-----~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~ 467 (1086)
+++.++.|+.+ ..+.+||..+++ -.. ...+......-.++.+ +++ +++.|+.+ ..+.+||..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCC
Confidence 57777777654 358999988865 211 1111111111122222 455 56666643 368899988
Q ss_pred CCceeEE--eecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 468 TGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 468 ~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+=...-..........+..-+++.++.
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 212 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVV 212 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred CCeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEE
Confidence 7754322 2111111111221 45677777654 45788888765433322222222212222336677777
Q ss_pred EeeCCCC-ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeE
Q 001396 541 CGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 607 (1086)
Q Consensus 541 ~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 607 (1086)
|+.+... ...+.+||+.+.+....-.... .......+. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCC-cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 7654322 3568999998876544322111 111222222 255666666644 35788888876543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.11 Score=54.99 Aligned_cols=236 Identities=10% Similarity=-0.060 Sum_probs=118.5
Q ss_pred eEEEEEecc--CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC----CEEE
Q 001396 342 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 415 (1086)
Q Consensus 342 ~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~ 415 (1086)
+|++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 467777653 568888887765332100 1111111222222 67777777754 5788
Q ss_pred EEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC------CcEEEEeCCCCceeEE--eecCCcceEEEee
Q 001396 416 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYS--FEGHGAPVYSLCP 487 (1086)
Q Consensus 416 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~ 487 (1086)
+||..+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 99988764321 1111111111122222 555 56666654 4688999887754322 1111111111211
Q ss_pred cccCCccEEEEEEc---------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC-CceeEEEEeCC
Q 001396 488 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNES 557 (1086)
Q Consensus 488 ~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~ 557 (1086)
++.+++.|+. -..+.+||..+..=...-..........+..-+++.++.|+.+.. ....+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 4456666654 345788888776433322222222222222236777777665332 12458999998
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEE
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 608 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~ 608 (1086)
+.+....-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+-..
T Consensus 225 ~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 225 LNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 876543321111 1122223333 55666667643 568899998876443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.44 Score=50.53 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=57.9
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEEccCceE------------------EEEEcCCCCCeEEEEEcCCCCCEEEEEeC
Q 001396 799 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD 858 (1086)
Q Consensus 799 v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 858 (1086)
...++|.|+|.+.++-. ++.-.|--+..+.. +..+..+......++|. ++.+++....
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeecccc
Confidence 45789999887766553 22222222222211 12222222345678887 4556666666
Q ss_pred CCeEEEEEcCCcee----EEEeccccCCeEEEEEeCCCCEEEEEe
Q 001396 859 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 859 dg~v~iwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~s~s 899 (1086)
.+.|....+..+.. ...+.+..+++..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 66777777665432 233455557899999999998777654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.049 Score=57.75 Aligned_cols=234 Identities=8% Similarity=-0.015 Sum_probs=119.1
Q ss_pred CEEEEEeC--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC----CcEEEEeCCCCceeEEe-
Q 001396 403 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSF- 475 (1086)
Q Consensus 403 ~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~- 475 (1086)
.+++.|+. ...+.+||..+++-... ..+......-..+. -+++ +++.|+.+ ..+.+||..+++-...-
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDI-RCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEEC-CCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecC-CCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555554 34688999887653221 11111111112222 2555 56667654 57889998887543221
Q ss_pred -ecCCcceEEEeecccCCccEEEEEEcC------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-
Q 001396 476 -EGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG- 547 (1086)
Q Consensus 476 -~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~- 547 (1086)
.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++.+...
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence 111111112222 45677777765 458888887765333222222222222223467777777654332
Q ss_pred ----ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCCCCCCC
Q 001396 548 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE 618 (1086)
Q Consensus 548 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 618 (1086)
...+.+||+.+.+....-.... ....-..+.+ +++.++.|+.+ ..+.+||+.+.+-...-......
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-- 238 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG-- 238 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB--
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc--
Confidence 3568999998876543322111 1111222222 55556665533 46899999887654432222211
Q ss_pred CceEEEecCCCEEEEEECC-----CcEEEEECCCCCe
Q 001396 619 NPRICFNKNGTLLAVIANE-----NRIKILETPESNS 650 (1086)
Q Consensus 619 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 650 (1086)
....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 239 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 1122222267777787743 5688888887643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.058 Score=57.00 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=116.9
Q ss_pred CCEEEEEeCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-----CcEEEEeCCCCcee
Q 001396 402 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 472 (1086)
Q Consensus 402 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-----~~i~iwd~~~~~~~ 472 (1086)
+..++.|+.+ ..+.+||+.+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM--AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE--CCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555532 357888887764221 1111111111112222 455 56666644 35889998876533
Q ss_pred EE--eecCCcceEEEeecccCCccEEEEEEcCC-----eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 473 YS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 473 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
.. +.........+.+ ++.+++.|+.++ .+.+||..+.+-...-..........+..-+++.++.|+.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 22 1111111112222 456777777654 467778766543332222222111122224677777776543
Q ss_pred CC---ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 546 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 546 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
.. ...+.+||+.+.+....-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 32 3458999998876544322111 1112222222 55666666643 4689999988765544322211
Q ss_pred CCceEEEecCCCEEEEEECCC-----cEEEEECCCCC
Q 001396 618 ENPRICFNKNGTLLAVIANEN-----RIKILETPESN 649 (1086)
Q Consensus 618 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 649 (1086)
.....+..-++++++.|+.++ .+.+||..+.+
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 122223333677777777543 47888887664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.25 Score=53.27 Aligned_cols=233 Identities=9% Similarity=-0.000 Sum_probs=118.7
Q ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceE----eccccccEeEEEecCC---CCcEEEEEEeC------
Q 001396 391 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------ 457 (1086)
Q Consensus 391 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~v~~v~~s~d---~~~l~l~s~~~------ 457 (1086)
.....|+|.|||+.|.++...|.|++++... ........ ..........++|+|+ +.. +.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCC
Confidence 4567999999999444555778999998543 21111111 1122345789999996 554 3333322
Q ss_pred -CCcEEEEeCCCC--ce--eEE-eecC------CcceEEEeecccCCccEEEEEEc-------------CCeEEEEEcCC
Q 001396 458 -DKTIKVWDAVTG--SR--TYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDS 512 (1086)
Q Consensus 458 -d~~i~iwd~~~~--~~--~~~-~~~h------~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~~ 512 (1086)
...|..|++..+ +. ... +... ...-..++|. +||.+.++.+. .|.|.-++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666533 11 111 1111 1113457774 46755555433 24566666543
Q ss_pred Cc------------eeEEecCCCCceEEEEEec-CCCEEEEEeeCCCCceeEEEEeCCCCee------------------
Q 001396 513 LG------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAI------------------ 561 (1086)
Q Consensus 513 ~~------------~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~------------------ 561 (1086)
.- ....+.........++|+| +|++.++ -...++...|.+. ..+.-
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccC
Confidence 20 1111222223577899999 5554444 3221111122221 11110
Q ss_pred -------------eeEEecccccCCceEEEEEec-------CCCEEEEEECCCcEEEEEcCCCeeEEEEcC-CCCCCCCc
Q 001396 562 -------------KRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENP 620 (1086)
Q Consensus 562 -------------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~ 620 (1086)
+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+.
T Consensus 251 ~~~~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~ 326 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIR 326 (353)
T ss_dssp TCCBSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEE
T ss_pred cccCCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCcee
Confidence 011111 13466777764 456666666777888888876654433221 11123578
Q ss_pred eEEEecCCCEEEEE
Q 001396 621 RICFNKNGTLLAVI 634 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~ 634 (1086)
.+++.|||.+.++.
T Consensus 327 ~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 327 DVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 89999999865543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.12 Score=54.97 Aligned_cols=232 Identities=9% Similarity=-0.029 Sum_probs=115.9
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC-----C------CcEEEEeCCCCceeE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY 473 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~-----d------~~i~iwd~~~~~~~~ 473 (1086)
++.|+ ..+.+||..+++-.. ..+.....+....+...+++ +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 34444 468899998876322 22222222333333444566 5666663 1 127788988765422
Q ss_pred EeecCCcceE--EEeecccCCccEEEEEEcC--------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 474 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 474 ~~~~h~~~v~--~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+..-..+-. +++. . ++.+++.|+.+ ..+.+||..+.+=...-..+.......+...+++.++.|+.
T Consensus 82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 111111111 1111 1 44566666642 35788888765432221222222222233356677777765
Q ss_pred CC--CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeEEEEcCCCCC
Q 001396 544 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL 616 (1086)
Q Consensus 544 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 616 (1086)
.. .....+.+||+.+.+....-.... ......++. -+++.++.|+.++ .+.+||+.+.+-...-.....
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 233 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE- 233 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 22 123468999998876543221111 111122222 2556666676544 588999988765554332222
Q ss_pred CCCceEEEecCCCEEEEEECC--------------CcEEEEECCCCCee
Q 001396 617 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV 651 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~ 651 (1086)
.....+..-++++++.|+.+ ..+.+||..+.+..
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 12222333366777777753 23677888776443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.38 Score=53.20 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=78.6
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccCc------eE-------EEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTF------KT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDST 861 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~ 861 (1086)
.....+.++|||+++++++ +.++.++|+... +. ..... -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3445788999999999998 688999998742 11 22222 334567899999 7866677778999
Q ss_pred EEEEEcCCc----------eeEEEeccccCCeEEEEE------eCCCCEEEEEe---CCCc----------EEEEECCCC
Q 001396 862 ILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGW 912 (1086)
Q Consensus 862 v~iwd~~~~----------~~~~~l~~h~~~v~~l~~------spdg~~l~s~s---~dg~----------i~iwd~~~~ 912 (1086)
|.-|++... ..+..+.-|-. +-.+.- .|||++|++.. .|+- -.+.|+...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 34556655544 223333 47999999974 4553 367787664
Q ss_pred c
Q 001396 913 G 913 (1086)
Q Consensus 913 ~ 913 (1086)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.11 Score=54.81 Aligned_cols=195 Identities=8% Similarity=-0.029 Sum_probs=96.2
Q ss_pred CCCEEEEEeCC-----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC-----cEEEEeCCCCc
Q 001396 401 DGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-----TIKVWDAVTGS 470 (1086)
Q Consensus 401 dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~-----~i~iwd~~~~~ 470 (1086)
+++.++.|+.+ ..+.+||..+.+-.. ...+......-..+.+ +++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777654 358889988764221 1111111111122222 455 556666443 57788988765
Q ss_pred eeEE--eecCCcceEEEeecccCCccEEEEEEcC-------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 471 RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 471 ~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+=...-..........+..-+++.++.|
T Consensus 136 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 211 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVG 211 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred EeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEEC
Confidence 4322 1111111111212 44566666543 347888887654333222222111112223367777777
Q ss_pred eeCCCC-ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeE
Q 001396 542 GTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLL 607 (1086)
Q Consensus 542 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~ 607 (1086)
+.++.. ...+.+||+.+.+....-.... .......+. .++..++.|+.++ .+.+||+.+.+-.
T Consensus 212 G~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 212 GHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 654321 2468999998876543322111 111112222 2556666666443 4788888876543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.85 Score=48.60 Aligned_cols=207 Identities=10% Similarity=0.042 Sum_probs=113.6
Q ss_pred cEEEEEECCCCCEEEEEe------------CCCEEEEEEecCCCc-cccceEecc-----ccccEeEEEecC--CCCcEE
Q 001396 392 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 451 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~v~~s~--d~~~l~ 451 (1086)
..-.++..|+|..+++++ .+|.|.++|.++... .+.+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788886666652 689999999874321 2222 2333 234666777766 454213
Q ss_pred EEEEeC--CCcEEEEeCCCCce----eEEeecC-CcceEEEeecccCCccEEEEEEc-----------------CCeEEE
Q 001396 452 VITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 507 (1086)
Q Consensus 452 l~s~~~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~v 507 (1086)
+++-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56788887665322 2333322 1345677774 35666655431 233444
Q ss_pred EEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC-Cee--eeEEecccccCCceEEEEEec-C
Q 001396 508 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 583 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~ 583 (1086)
+| .++.. .....-...+.++|+||++.++.+.. ....|+.|++.. +.. .+.+. . ....-.+++.+ +
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 43 33222 22222235678999999998887754 256799999863 332 22331 1 25677889999 5
Q ss_pred CCEEEEEECC-CcEEEEEcC--CCeeEEEEc
Q 001396 584 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 611 (1086)
Q Consensus 584 ~~~l~~~s~d-g~i~iwd~~--~~~~~~~~~ 611 (1086)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344444544 244444443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.39 Score=51.19 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=99.2
Q ss_pred CCCeEEEEEcCC--cee-EEEecc-----ccCCeEEEEEeC--CCC-EEEEE-eC--CCcEEEEECCCCceeeeeeeecc
Q 001396 858 DDSTILIYNARS--SEV-ISKLEG-----HSKRVTGLVFSD--ALN-ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTP 923 (1086)
Q Consensus 858 ~dg~v~iwd~~~--~~~-~~~l~~-----h~~~v~~l~~sp--dg~-~l~s~-s~--dg~i~iwd~~~~~~~~~~~~~~~ 923 (1086)
.+|.|.++|..+ ++. ...+.+ .......+.+.+ ++. +|+.+ .. +.+|.+|+++.+... ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEecc
Confidence 689999999874 221 112222 234667787766 454 34444 22 567888888764322 2234444
Q ss_pred CCCccCCCCceEEEEecCCCEEEEEe----C------------CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 924 DGVMTLAPSETHIQFHKDQTRFLLVH----E------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 924 ~~~~~~~~~v~~~~~s~dg~~l~~~~----d------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
.+... .....+++.++|.+.++.. | ..=.||.+..++. ..+. ..-...+.++|||||+.|
T Consensus 160 ~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~-~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 160 RHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVA-EGFDFANGINISPDGKYV 235 (355)
T ss_dssp CCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEE-EEESSEEEEEECTTSSEE
T ss_pred ccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEee-cCCcccCcceECCCCCEE
Confidence 44322 3578999999999887742 1 1233444433332 2212 224567899999999887
Q ss_pred EEEE-CCCcEEEEEcCC-CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC
Q 001396 988 FTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1046 (1086)
Q Consensus 988 ~s~~-~Dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d 1046 (1086)
+.+. ..+.|..|++.. +.+.. .... ..+ ..+=.++.++++|++.+++..+
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~-~~~~-~~~-------g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTP-LRVL-SFD-------TLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEE-EEEE-ECS-------SEEEEEEECTTTCCEEEEEESC
T ss_pred EEEeCCCCeEEEEEECCCCcEec-CEEE-eCC-------CCCceEEEeCCCCcEEEEecCC
Confidence 7665 467899999864 43321 1111 111 2344577777237777766544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.026 Score=54.44 Aligned_cols=184 Identities=8% Similarity=-0.022 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcee-----EEEeccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee----e
Q 001396 849 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C 917 (1086)
Q Consensus 849 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~----~ 917 (1086)
...+|.+...| +|+.=...++.. ..+..++ =..+..++|+|+|.+.+. .+|.+.-.+..+..... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566667777 666655554431 1111122 236789999999987776 66754444432211110 0
Q ss_pred eeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceecccc------CCccCEEEEEEeCCCCEEEEEE
Q 001396 918 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 918 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
..+-. .+.. ...++.|.|+|.+.++ .||.|+-++-.+...-.-+.. +--..+..|.|.|+|.+.+..
T Consensus 80 t~IG~-~Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 80 KKIGN-GGWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEEEC-SCGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cEecc-cccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 11100 0111 1478999999999998 779888887644222211111 112578999999999877765
Q ss_pred CCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001396 992 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1049 (1086)
Q Consensus 992 ~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v 1049 (1086)
|+.++-+..+++.....+.....+... .-.++.. +.|.| ++.++++. +|.+
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~-l~f~~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQG--GWDTFKF-LFFSS-VGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESS--SGGGEEE-EEECT-TSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCcccccccceeccC--CcceEEE-EEECC-CCcEEEEe--CCeE
Confidence 887654433332211111111111111 2223333 55888 66666665 7743
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.13 Score=63.75 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=142.6
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccc
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 879 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 879 (1086)
+.-.+|..+.+|.-.+.+++|+|+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45567888888887788899999998877776653 34566666653 44666555 56799999974 2444555545
Q ss_pred ----cCCeEEEEEeCCCCEEEEEe-------CCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEe--cCCCEEE
Q 001396 880 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--KDQTRFL 946 (1086)
Q Consensus 880 ----~~~v~~l~~spdg~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~ 946 (1086)
...|..-..+++.++++..| -.|.+.+|+++.+. .+..+||.. ....+... +....|+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 35677788899999988654 24788999988633 444555553 12222221 1112233
Q ss_pred E-Ee----CCeEEEEEcCCc---cc-e-----eccccC--CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001396 947 L-VH----ETHLAIYEAEEL---TC-L-----KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010 (1086)
Q Consensus 947 ~-~~----d~~i~vwd~~~~---~~-~-----~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~ 1010 (1086)
+ +. .+.++|.++... .. . ...++. -..-..++..|+.-..+...+.-|.|.++|+.+|.++.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2 22 267888888543 11 1 111111 1444556777877777888888999999999999998554
Q ss_pred ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCC
Q 001396 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1057 (1086)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1057 (1086)
+ -+..++... +.+. ...-++.....|.|.--.+.+.
T Consensus 297 r--------is~~~iF~~--~~~~-~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 R--------ISGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred c--------ccCCceEEe--ccCC-CCCceEEEcCCceEEEEEEccc
Confidence 4 112333322 2233 2233444557777766666543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.8 Score=51.11 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=63.1
Q ss_pred CeeEEEeecCCCEEEEEeC-CeEEEEEccCceE--EEEEcC------CCCCeEEEEEcCC---CCCEEEEEeC-------
Q 001396 798 AVPCFALSKNDAYLFSASG-GVISLYIVMTFKT--ILTIMP------PSPTATSLAFNPH---DNNVIAIGMD------- 858 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~--~~~~~~------~~~~i~~l~~s~~---d~~~lasg~~------- 858 (1086)
....|+|.|||+++++-.. +.|.+++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4569999999998888766 4788887655543 233322 2356779999994 3444443332
Q ss_pred -----CCeEEEEEcCCc-------eeE-EEecc-ccCCeEEEEEeCCCCEEEEEeC
Q 001396 859 -----DSTILIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGG 900 (1086)
Q Consensus 859 -----dg~v~iwd~~~~-------~~~-~~l~~-h~~~v~~l~~spdg~~l~s~s~ 900 (1086)
...|.-|+...+ +.+ ..+.. .......|+|.|||++.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235655655321 112 12322 1123688999999998888664
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.49 Score=50.05 Aligned_cols=235 Identities=7% Similarity=-0.053 Sum_probs=116.4
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-----C------
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-----K------ 411 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d------ 411 (1086)
|++.|+ ..+.+||..+++-... . +..........+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~-~-----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA-S-----------------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE-E-----------------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEecC-C-----------------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 556666 5788999888753210 0 1112122233344457888888873 1
Q ss_pred CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC--------CcEEEEeCCCCceeE--EeecCCcc
Q 001396 412 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTY--SFEGHGAP 481 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d--------~~i~iwd~~~~~~~~--~~~~h~~~ 481 (1086)
..+.+||..+++-.. ...+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-.. .+......
T Consensus 67 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 127788887764211 1111111111112222 444 55556532 458899988765322 11111111
Q ss_pred eEEEeecccCCccEEEEEEc-C-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-ceeEEEE
Q 001396 482 VYSLCPHAKENIHFIFSISV-D-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEW 554 (1086)
Q Consensus 482 v~~~~~~~~~~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-~~~i~iw 554 (1086)
-..+.+ ++.+++.|+. + ..+.+||..+.+=...-..........+..-+++.++.|+.+..+ ...+.+|
T Consensus 142 ~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 142 HTVLSH----MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp CEEEEE----TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEE
T ss_pred eeEEEE----CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEE
Confidence 111211 4456777765 2 458888887654322222222222122223367777777754321 2468899
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC--------------CcEEEEEcCCCeeEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 609 (1086)
|+.+.+....-.... .......+. -+++.++.|+.+ ..+.+||+.+.+-...
T Consensus 218 d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 218 SITDNKWAPFEAFPQ-ERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp ETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCeEEECCCCCC-cccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 998876544322111 111222222 255666666643 2377888888765554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.13 Score=54.39 Aligned_cols=238 Identities=11% Similarity=0.026 Sum_probs=122.7
Q ss_pred EeecCCCEEEEEe-C----CeEEEEEccCceEEEEEcCCCCCe-EEEEEcCCCCCEEEEEeC----C-----CeEEEEEc
Q 001396 803 ALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMD----D-----STILIYNA 867 (1086)
Q Consensus 803 ~~s~dg~~l~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~lasg~~----d-----g~v~iwd~ 867 (1086)
+..-++..++.|+ + ..+.+||..+.+-...-....... .+++.. ++++++.|+. + ..+.+||.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 3344566666665 1 458999988765332211111111 122222 5677777775 2 36889998
Q ss_pred CCceeE--EEeccccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEec
Q 001396 868 RSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 940 (1086)
Q Consensus 868 ~~~~~~--~~l~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 940 (1086)
.+.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+ +.. .....+..-
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~------r~~~~~~~~ 167 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTR------RIGVGVAVL 167 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSC------CBSCEEEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccc------ccceEEEEE
Confidence 876532 222221122222222 67777777643 3588899887653322111 111 111122223
Q ss_pred CCCEEEEE-eC-----CeEEEEEcCCccceeccccCC-ccCEEEEEEeCCCCEEEEEECC-----CcEEEEEcCCCceee
Q 001396 941 DQTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQC 1008 (1086)
Q Consensus 941 dg~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~s~~~D-----g~v~vWd~~~~~~~~ 1008 (1086)
++++++.+ .+ +.+.+||..+.+....-.... ......+. -+++.++.||.+ ..+.+||+.+.+...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 66666663 22 468999988765432211111 11112222 277788888765 458999998876542
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEccCCCCCCCCCCCcc
Q 001396 1009 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1067 (1086)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~p~ 1067 (1086)
.- .++.. -...+++.. ++.+++.|+.++ .|.++|+. ..+|...++.
T Consensus 246 ~~----~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 296 (308)
T 1zgk_A 246 VA----PMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM 296 (308)
T ss_dssp CC----CCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred CC----CCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence 21 12221 111122222 467888887653 56677774 4568765443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.12 Score=54.77 Aligned_cols=238 Identities=6% Similarity=-0.052 Sum_probs=117.7
Q ss_pred CCCCCEEEEEeCC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC----C-----CcEEEEe
Q 001396 399 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD 465 (1086)
Q Consensus 399 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~----d-----~~i~iwd 465 (1086)
.-++..++.|+.+ ..+.+||..+++-... ..+......- +++. -+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3356777777632 3588999887643221 1111111111 1222 2444 5565654 2 4688999
Q ss_pred CCCCceeEE--eecCCcceEEEeecccCCccEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEE
Q 001396 466 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 466 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 538 (1086)
..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 887653221 1111111122222 45566666643 357788877654332212121111111222366777
Q ss_pred EEEeeCCCC-ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcC
Q 001396 539 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 539 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 612 (1086)
+.|+.++.. ...+.+||+.+.+....-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 776654322 3568999998776543221111 1112222222 55566666643 5699999988765543222
Q ss_pred CCCCCCCceEEEecCCCEEEEEECC-----CcEEEEECCCCCe
Q 001396 613 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 650 (1086)
Q Consensus 613 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 650 (1086)
... .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 211 11222222367777777643 4577888876643
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.45 Score=50.47 Aligned_cols=227 Identities=10% Similarity=0.005 Sum_probs=111.0
Q ss_pred EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC----CC-------cEEEEeCCCCceeEE--eecCC
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 479 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~----d~-------~i~iwd~~~~~~~~~--~~~h~ 479 (1086)
.+.+||..+++-.. ..+.....+....+...+++ +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988775332 12221122222333344555 5666662 11 177888877654321 11111
Q ss_pred cceEEEeecccCCccEEEEEEcC-------CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC--Ccee
Q 001396 480 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 550 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~ 550 (1086)
.....+.+ ++.+++.|+.+ ..+.+||..+.+=...-..........+...+++.++.|+.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111222 45677777754 24677777665433322222222222223356777777764221 1345
Q ss_pred EEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-----CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEe
Q 001396 551 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 625 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 625 (1086)
+.+||+.+.+....-.... .......+ . -+++.++.|+.+ ..+.+||+.+.+-...-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVA-I-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEE-E-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEE-E-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543322111 11112222 2 245666666543 3477899888765443222211 12222333
Q ss_pred cCCCEEEEEECC--------------CcEEEEECCCCCeee
Q 001396 626 KNGTLLAVIANE--------------NRIKILETPESNSVD 652 (1086)
Q Consensus 626 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~ 652 (1086)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 456777776643 357788887764443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.42 Score=51.25 Aligned_cols=156 Identities=11% Similarity=0.003 Sum_probs=95.2
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccC-CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCcccee--
Q 001396 889 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-- 965 (1086)
Q Consensus 889 spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-- 965 (1086)
+.+|..++.+- ++.||.-++.... .-+.+.... -.. ..+..+..||+|++||..++..|.|..+..+....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f---~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVL---DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCC---CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC--cceEEecCccccc---CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc
Confidence 34555555543 4667766776432 223333332 011 24788999999999999999999999998432111
Q ss_pred ----------ccccC-----CccCEEEEEEeC---CCCEEEEEECCCcEEEEEcCCCceeee-eccc-cccCCCCccCcc
Q 001396 966 ----------QWFPI-----SSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLEVQCR-ILST-AYLRPTTSCLHV 1025 (1086)
Q Consensus 966 ----------~~~~~-----h~~~v~~l~fs~---dg~~l~s~~~Dg~v~vWd~~~~~~~~~-~~~~-~~~~~~~~~~~~ 1025 (1086)
.+..+ ...+|..+.|.| .|..|++-..|++|++||+........ +... ..+... ....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d--~~~~ 180 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLD--ARVN 180 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESC--SSCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCC--cccc
Confidence 11111 257899999998 456899999999999999987432111 1100 001111 1113
Q ss_pred cceEEEECCCCCCEEEEEe--CCCcEEEEc
Q 001396 1026 YPHAIAAHPLKPTQFAVGL--TNGEVYVIE 1053 (1086)
Q Consensus 1026 ~~~~~~~~p~~~~~l~~~~--~dg~v~vw~ 1053 (1086)
...+++|.+ ++-.|.+.. ..|.|+-.-
T Consensus 181 ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 181 DITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred eEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 345788887 666677755 778877543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.76 Score=48.66 Aligned_cols=235 Identities=9% Similarity=0.005 Sum_probs=111.5
Q ss_pred EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC----CC------
Q 001396 343 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KH------ 412 (1086)
Q Consensus 343 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----d~------ 412 (1086)
+++.|+. .+..||..+++-... . +..........+...+++.++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-~-----------------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-A-----------------LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-E-----------------ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-c-----------------CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5666653 378888887653220 0 1111112223334567888888873 12
Q ss_pred -EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC-------CcEEEEeCCCCceeEEeecCCcceE-
Q 001396 413 -IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-------KTIKVWDAVTGSRTYSFEGHGAPVY- 483 (1086)
Q Consensus 413 -~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d-------~~i~iwd~~~~~~~~~~~~h~~~v~- 483 (1086)
.+.+||..+++-... ..+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-...-. ...+..
T Consensus 78 ~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGL-PPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEEEEC-SCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEES
T ss_pred ccEEEEeCCCCcEEEC-CCCCccccccceEEE--CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccc
Confidence 277788776543211 111111111112222 444 55556543 357888988765432211 111111
Q ss_pred -EEeecccCCccEEEEEEc------CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCC-ceeEEEEe
Q 001396 484 -SLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWN 555 (1086)
Q Consensus 484 -~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-~~~i~iwd 555 (1086)
+++. -++.+++.|+. -..+.+||..+.+=...-..........+..-+++.++.|+.+..+ ...+.+||
T Consensus 152 ~~~~~---~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 152 HNVIS---HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp CEEEE---ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEE---ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEE
Confidence 1111 14556666654 2358888887754333222222111111222467777777654321 24678999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC--------------CcEEEEEcCCCeeEEE
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------------g~i~iwd~~~~~~~~~ 609 (1086)
+.+.+....-.... ..... +++ ..++..++.|+.+ ..+.+||+.+.+-...
T Consensus 229 ~~~~~W~~~~~~p~-~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 229 LKTNKWEVMTEFPQ-ERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TTTCCEEECCCCSS-CCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCCCeEEECCCCCC-cccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 88776443221111 11111 222 2245555666543 3477778777665444
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.06 E-value=1.9 Score=45.69 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=70.0
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
..+.++...-...+.++|.|||+ ++++-...|.|++++..+++......+. .+..........|+|
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~ 87 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL 87 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence 34445555555889999999997 5666554799999987666542110000 012234567889999
Q ss_pred CCC---CCEEEEE-e--CCCEEEEEEecCCC----cc---ccce-Eec-cccccEeEEEecCCCCcEEEEEEe
Q 001396 399 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 456 (1086)
Q Consensus 399 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~~~-~h~~~v~~v~~s~d~~~l~l~s~~ 456 (1086)
+|| +.+|... + .++.|.-|.+..+. .+ +.+. .+. +....-..++|.|||. ++++.+
T Consensus 88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 996 3444433 2 34556667666521 11 1111 121 1112346799999997 555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.25 Score=61.29 Aligned_cols=238 Identities=12% Similarity=0.123 Sum_probs=139.5
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCE
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 413 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 413 (1086)
.-.+|..+ ++|.-. ..++.|+|+++...++.+.+ ..+|..=.|-.+. .|+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCC-eeEEEc-CCe
Confidence 34567766 566654 58899999999887765332 2467777776444 444443 345
Q ss_pred EEEEEecCCCccccceEeccc----cccEeEEEecCCCCcEEEEEEe------CCCcEEEEeCCCCceeEEeecCCcceE
Q 001396 414 VQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 414 i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~s~d~~~l~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
|+-|++.+...... .+..| ...|..-.-+++.+++ +++|= -.|.+.+|..+.+. .+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh
Confidence 99999975432221 23333 3467777889999963 33332 35788899866543 456677777665
Q ss_pred EEeecccCCccEEEEEEc----CCeEEEEEcCCC---ceeEE------ecCC---CCceEEEEEecCCCEEEEEeeCCCC
Q 001396 484 SLCPHAKENIHFIFSISV----DGKIKAWLYDSL---GARVD------YDAP---GLGCTRMAYSANGRRLFSCGTSKEG 547 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~---~~~~~------~~~~---~~~i~~~~~s~d~~~l~~~~~~~~~ 547 (1086)
.+.....+....|++-.. .+.+++-++... ..... +..+ ..-..++..++.-..+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 555433222223333222 268888888543 11110 1111 122345666776666666654
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
.|.++++|+.||.++..-+-.. ..|...+......-+++....|.|.--.+.....
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred CceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 6789999999998876555433 4555554444444455555666655555554443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.087 Score=50.86 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------EEEe--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001396 839 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910 (1086)
Q Consensus 839 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l--~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 910 (1086)
.++.++|+| ++.+.++ .+|.++-.+..+++. -..+ .+... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 566999999 8988877 677777766654211 1111 01222 478999999998888 56877766643
Q ss_pred CCceeeeee--eeccC-CCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceec-----c-ccCCccCEEEEEEe
Q 001396 911 GWGIQTCRS--LQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-----W-FPISSVPISQATFS 981 (1086)
Q Consensus 911 ~~~~~~~~~--~~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~-----~-~~~h~~~v~~l~fs 981 (1086)
+.......- ..... +-. .+..+.|.|+|.+-++. ++.++-....++....- . -.+.-..-.-+.|+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~----~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS----GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG----GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred cCCCCceeccccEeccCCCC----ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 222111100 01111 111 47899999999999999 88865444443221111 0 11223344557788
Q ss_pred CCCCEEEEEECCCcE
Q 001396 982 CDCRMVFTSFVDGTL 996 (1086)
Q Consensus 982 ~dg~~l~s~~~Dg~v 996 (1086)
++|...++. +|.+
T Consensus 191 ~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKF 203 (236)
T ss_dssp TTSCEEEEE--TTEE
T ss_pred CCCcEEEEe--CCeE
Confidence 888776655 6633
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.08 Score=55.94 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=107.0
Q ss_pred CEEEEEeCCCeEEEEEcCCceeEEEeccc-cCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEECCCCceeeeeeeeccCC
Q 001396 851 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 925 (1086)
Q Consensus 851 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~v~~l~~--sp-dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~ 925 (1086)
.++++++.||.|.-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.......+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888754 122222110 01 23334333 589999999988775432111111111
Q ss_pred CccCCCCceEEEE------------ecCCCEEEEEeCCeEEEEEcCCccceeccccCCccC------EEEEEEe-----C
Q 001396 926 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C 982 (1086)
Q Consensus 926 ~~~~~~~v~~~~~------------s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~ 982 (1086)
..-+.. +.+|..++.+.++++...|+.+|+.+-++..+.... ..+.... .
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 011221 234444444789999999999999987755432111 0111110 1
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEccCCCCCCC
Q 001396 983 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1061 (1086)
Q Consensus 983 dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~~ 1061 (1086)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+.... ..+. .....+. |+.. ++++.||.|.-.|.......|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-cccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 235677777777777777 4564 433332222222200 0000 0000011 3444 557888888888877666677
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.6 Score=50.48 Aligned_cols=148 Identities=9% Similarity=0.023 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCceeEEecCCC-Cce-EEEEEecCCCEEEEEeeCCCC--ceeEEEEeC--CCCeeeeEEecccccCCceE
Q 001396 503 GKIKAWLYDSLGARVDYDAPG-LGC-TRMAYSANGRRLFSCGTSKEG--ESFLVEWNE--SEGAIKRTYQGLQLQHNSVS 576 (1086)
Q Consensus 503 g~i~vwd~~~~~~~~~~~~~~-~~i-~~~~~s~d~~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~ 576 (1086)
..+.+||..+.+=...-.... ... .+++. -+++.++.|+.++.+ ...+..||+ .+.+.... ...........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-APVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEEC-CCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-CCCCCCccccc
Confidence 578888887654333222221 111 22232 366666666643221 234677776 44433222 11110011112
Q ss_pred EEEEecCCCEEEEEECC----------------------CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001396 577 VVHFDTAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 634 (1086)
Q Consensus 577 ~~~~~~~~~~l~~~s~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 634 (1086)
..+...++..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11223355566666522 2578899987665443332222 22234444578888888
Q ss_pred ECCC------cEEEEECCCCCeeeec
Q 001396 635 ANEN------RIKILETPESNSVDAA 654 (1086)
Q Consensus 635 ~~dg------~i~iw~~~~~~~~~~~ 654 (1086)
+.++ .+.++++++++.+...
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 8643 3566688777665443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.63 Score=50.30 Aligned_cols=242 Identities=11% Similarity=0.043 Sum_probs=115.6
Q ss_pred cCCCEEEEEe--CCeEEEEEccC----ceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeC-C---------CeEEEEEcCC
Q 001396 806 KNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 869 (1086)
Q Consensus 806 ~dg~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~~ 869 (1086)
-+++.++.|+ ...+.+||..+ ++.+..+......-.+++.. ++++++.|+. + ..+.+||..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3677777775 36799999863 23322222111111223332 5677777775 2 3688999987
Q ss_pred ceeE--EEeccccCCeEEEEEeCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 001396 870 SEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVWD 908 (1086)
Q Consensus 870 ~~~~--~~l~~h~~~v~~l~~spdg~~l~s~s~d---------------------------------------g~i~iwd 908 (1086)
.+-. ..+.. .......+...++++++.|+.+ ..+.+||
T Consensus 96 ~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCCS-SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCCC-cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 6432 22220 1111111222577888888865 4688999
Q ss_pred CCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE-e------CCeEEEEEc--CCccceecc-ccCCccCEEEE
Q 001396 909 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPISQA 978 (1086)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~------d~~i~vwd~--~~~~~~~~~-~~~h~~~v~~l 978 (1086)
..+.+-.. +....... .-...+..-++++++.+ . ...+.+||+ .+.+....- ...........
T Consensus 175 ~~~~~W~~---~~~~p~~~----~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSY---AGESPWYG----TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEE---EEECSSCC----CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEE---CCCCCCCC----cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 88765333 22111100 11022223356666653 2 235777876 443322210 11111111222
Q ss_pred EEeCCCCEEEEEECC----------------------CcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCC
Q 001396 979 TFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1036 (1086)
Q Consensus 979 ~fs~dg~~l~s~~~D----------------------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1036 (1086)
+...++++++.||.+ ..+.+||+.+.+....- .++.. .....++.. +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~----r~~~~~~~~---~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQG----RAYGVSLPW---N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSC----CBSSEEEEE---T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCC----cccceeEEe---C
Confidence 334477777777742 25788998877655321 22222 111122333 4
Q ss_pred CCEEEEEeCCCc----EEEEccCCCCCCCCCCCccc
Q 001396 1037 PTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDE 1068 (1086)
Q Consensus 1037 ~~~l~~~~~dg~----v~vw~~~~~~~~~~~~~p~~ 1068 (1086)
+.+++.|+.++. =-+|-+.-...+|....|.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 688889997641 13443333456677666655
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.37 E-value=2.9 Score=43.45 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=101.2
Q ss_pred EeeecCCCceEEEEEecc-------------CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEEC
Q 001396 333 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 399 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 399 (1086)
+--++++|+++..+...+ ..|+..++..++... +.. .. +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 445689999866665543 356666666654322 111 11 23678
Q ss_pred CCCCEEEEEe--C--CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 400 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 400 pdg~~las~~--~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
+++++|+... . +..|+.-++.+.. .+ .+..+.. .+|+++++.+ ..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~i-y~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRYF-YYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTEE-EEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCEE-EEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 2 3455556665433 22 2333332 4678899853 334334678888887766544333
Q ss_pred ecCCcceEEEeecccCCccEEEEEEcC--CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEE
Q 001396 476 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553 (1086)
Q Consensus 476 ~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~i 553 (1086)
.+ ... ..++| ++.+|+-.... ..|..-+++...... +.. ..+ ..|+|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 44566555433 355555555544332 221 222 34889999998764322 357888
Q ss_pred EeCCCCee
Q 001396 554 WNESEGAI 561 (1086)
Q Consensus 554 wd~~~~~~ 561 (1086)
.++.....
T Consensus 251 ~~~DG~~r 258 (302)
T 3s25_A 251 VKNDGTGF 258 (302)
T ss_dssp EETTSCCC
T ss_pred EECCCCcc
Confidence 88765443
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.008 Score=53.79 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccc----cCC--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY----YGD--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~----~~~--~~~~r~~l~ 139 (1086)
++|.|+-|.||||+..|..++|..+|.+--..+... .+.+++|..+....++.+++....+ +.. ...+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999999866555555 8888999888888777766543332 111 377888999
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhhh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQH 178 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~ 178 (1086)
..|++.= -.-|..+|++.+..++
T Consensus 112 ~fL~~~~----------------~~~ll~Iin~~i~i~v 134 (138)
T 2j4b_A 112 NFLEERN----------------LTYILKILNQHLDIKV 134 (138)
T ss_dssp HHHHHTT----------------CHHHHHHHHHHEEEEE
T ss_pred HHHHHCC----------------ChHHHHHHHHheeeEe
Confidence 9998741 1257778887765543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.15 E-value=1.1 Score=49.93 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=64.1
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCc--cCCCCceEEEEecC---CCEEEE--Ee---
Q 001396 880 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH--- 949 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d---g~~l~~--~~--- 949 (1086)
-...+.|+|.|||+++++-...+.|++++..++.... ......... .....+..|+|+|| +.+|.+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457899999999988875544568888765544322 111111110 01235779999996 555544 22
Q ss_pred ---------CCeEEEEEcCCc-------cceec-cccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 950 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 950 ---------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
...|.-|+...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666655422 11111 11222345789999999988777654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.97 E-value=4.1 Score=42.36 Aligned_cols=180 Identities=9% Similarity=0.108 Sum_probs=102.8
Q ss_pred EEECCCCCEEEEEeCC--------------CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE--eCCC
Q 001396 396 VVWSPDGSLLGVAYSK--------------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDK 459 (1086)
Q Consensus 396 l~~spdg~~las~~~d--------------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~--~~d~ 459 (1086)
--++++|.+|+.+... ..|+..++.+++... +... ....|+++++.++++.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCc
Confidence 3457889998887543 467777777765222 2221 12367889985433331 2344
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 538 (1086)
.|..-++. |.....+..+.. ..+.+ +++.|+-.+. ...|.+-++........+.. ... ..++|++.+|
T Consensus 130 ~Iy~~~~d-Gs~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~i 198 (302)
T 3s25_A 130 SLYRIRID-GEEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNV 198 (302)
T ss_dssp EEEEEETT-SCCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEE
T ss_pred eEEEEECC-CCCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEE
Confidence 56666765 444455544433 23433 4445554444 67788888776655544332 222 3466999999
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC--CCcEEEEEcCCC
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV 604 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~ 604 (1086)
+...... ...|..-++..+.. ..+.. ..+ ..|+|++.+|+.++. .+.|..-++...
T Consensus 199 y~t~~~~--~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 199 YYMDVNR--DNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEGGG--TTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEcCC--CcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 8765422 24688888776553 33322 223 347888988887643 355666666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.07 Score=56.39 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=104.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecC-CcceEEEeeccc-CCccEEEEE-EcCCeEEEEEcCCCceeEEecCC----C
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 523 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~----~ 523 (1086)
.++.++.||.|.-.|.++|+.+.+++.. ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788899999999999999999988654 123322211111 133334343 68999999998776554433221 1
Q ss_pred CceEE---EEE-e----cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCc-----eEEEEEe-----cCCC
Q 001396 524 LGCTR---MAY-S----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 585 (1086)
Q Consensus 524 ~~i~~---~~~-s----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~ 585 (1086)
.++.. ..+ . ..+..+++++. ++.++..|..+|+.+..+..... ... ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCB-CC--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCC
Confidence 11110 000 0 14556677765 78899999999999988875320 010 0011110 1234
Q ss_pred EEEEEECCCcEEEEEcCCCeeEEEE-----cCCCCCCCC-ceEEEecCCCEEEEEECCCcEEEEECCCCCeee
Q 001396 586 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 652 (1086)
Q Consensus 586 ~l~~~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 652 (1086)
.++.+..+..+.+.+ ++|+ ...+ ........+ .....+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 666666666666655 3342 1111 000000000 00011234555 557889999999988887665
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.028 Score=51.68 Aligned_cols=95 Identities=9% Similarity=0.164 Sum_probs=69.9
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccC----C--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYG----D--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~--~~~~r~~l~ 139 (1086)
++|.|+-|.|||||..|..++|..+|++--..++....+.+++|..+....++.+++....+.. . ...+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999997554444445778889988888777766654443221 1 267788888
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNW 176 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~ 176 (1086)
..|++.= -.-|..+|++.+..
T Consensus 132 ~fL~~~~----------------~~~ll~Iin~~i~i 152 (156)
T 2nxp_A 132 RHLQEKQ----------------NNQIWNIVQEHLYI 152 (156)
T ss_dssp HHHTTST----------------TCHHHHHHHHTCEE
T ss_pred HHHHHcC----------------ChHHHHHHHHheee
Confidence 8888731 12577777776544
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.17 E-value=6.3 Score=43.84 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=114.9
Q ss_pred CCCEEEEEe--CCeEEEEEccCceEEEEEcC-CCCCeEEEEEc--CCCCCEEEEEeC-------CCeE---------EE-
Q 001396 807 NDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI- 864 (1086)
Q Consensus 807 dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~-------dg~v---------~i- 864 (1086)
||+||..-. +..|...++...++-..+.- ....+..+.|- | +..+++.+++ ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 789998887 47788889998888766554 34578888886 6 5667776654 2221 11
Q ss_pred --EEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEECCC-------Cceeeee--
Q 001396 865 --YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR-- 918 (1086)
Q Consensus 865 --wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---------------~i~iwd~~~-------~~~~~~~-- 918 (1086)
.|..+.+...++.- .+....+...++|++.++.+... -+.++++.. ++.....
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 12222222222211 12333455677888888766532 255665421 1111100
Q ss_pred eeeccCCCc------------cCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCccc-------------eeccccCC
Q 001396 919 SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPIS 971 (1086)
Q Consensus 919 ~~~~~~~~~------------~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~-------------~~~~~~~h 971 (1086)
-+...++.. ........+.++|||++++++ -+.++.|+|++.... ..+.. -
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--L 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--C
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--C
Confidence 011111110 011345679999999999995 567899999985321 11111 2
Q ss_pred ccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 972 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 972 ~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
.......+|.++|....|-.-|..|.-|++...
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 456788899999955556668999999999864
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.07 E-value=13 Score=41.20 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.7
Q ss_pred ccEEEEEECCCCC-EEEEEeCCCEEEEEEecCCCccccceEec---------cccccEeEEEecCC
Q 001396 391 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 446 (1086)
Q Consensus 391 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~v~~s~d 446 (1086)
.....|+|.|||. .|+++...|.|++++............+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 55566788999999754321111111111 11456789999997
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.019 Score=51.92 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccc----cC--CChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY----YG--DALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~----~~--~~~~~r~~l~ 139 (1086)
++|.|+-|.||||+..| .++|..||.+.-..+.....+.+++|..+....++.+++....+ |. ....+-..|+
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~ 113 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999 99999999875443322234556666666666665555433322 11 1377888888
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhhhh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHV 179 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~ 179 (1086)
..|++.=.. =.+-|..+|++.+..++.
T Consensus 114 ~fL~~~~~~-------------gg~~ll~Iin~~i~i~v~ 140 (148)
T 2j49_A 114 YFLNENESI-------------GGSLIISVINQHLDPNIV 140 (148)
T ss_dssp HHHHHTGGG-------------THHHHHHHHHHHEEEEEC
T ss_pred HHHHHcCcc-------------cHHHHHHHHHHheeEeee
Confidence 888873110 122578888887766544
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.88 E-value=24 Score=41.51 Aligned_cols=240 Identities=8% Similarity=0.008 Sum_probs=122.6
Q ss_pred ecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCC-----ccEEEEEECCCCCEEE
Q 001396 336 FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDGSLLG 406 (1086)
Q Consensus 336 ~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~la 406 (1086)
++||+++++++-|..| .|+++|+.+++.+.. .+. .. ... .....++|-.++..++
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~~~~~ 200 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKDTIIF 200 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETTEEEE
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCCEEEE
Confidence 8999998666655544 599999999987642 110 00 000 0112346653333333
Q ss_pred EE----------eCCCEEEEEEecCCCccccceEeccccccE-eEEEecCCCCcE---EEEEEeCC---CcEEEEeCCC-
Q 001396 407 VA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVWDAVT- 468 (1086)
Q Consensus 407 s~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~d~~~l---~l~s~~~d---~~i~iwd~~~- 468 (1086)
+. +....|+.|.+.+...-.. ..+.+....+ .....+++++.. .+++.+.+ ..+.+.|...
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK 279 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence 21 1224688888876532211 1344433332 345567777742 35554422 3456666553
Q ss_pred -CceeEEeecCCcceEEEeecccCCccEEEEE----------EcCCeEEEEEcCCCc-------eeEE-e-cCCCCceEE
Q 001396 469 -GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSLG-------ARVD-Y-DAPGLGCTR 528 (1086)
Q Consensus 469 -~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~-------~~~~-~-~~~~~~i~~ 528 (1086)
++ +..+....... +.. ..++.+++.. ...+.|...++.... .... + ......+..
T Consensus 280 ~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 280 NLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp SCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred CCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 33 22222111111 111 1133444422 246778889887642 1222 2 233446777
Q ss_pred EEEecCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeE-EecccccCCceEEEEEecCCCEEEE-EE---CCCcEEEEEcC
Q 001396 529 MAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMN 602 (1086)
Q Consensus 529 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~iwd~~ 602 (1086)
+.+..+ ..+++... ++...+.++|+.++. .... +.... .+.+......+++..++. .+ .-+.++.+|+.
T Consensus 355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 888765 44444433 446678999987775 2333 32221 145666666677655444 33 34668888876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=5.6 Score=47.19 Aligned_cols=196 Identities=10% Similarity=0.118 Sum_probs=105.9
Q ss_pred cCCCEEEEEeC-----CeEEEEEccCceEEEEE-c-------CCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001396 806 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 866 (1086)
Q Consensus 806 ~dg~~l~~~~d-----g~i~iwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd 866 (1086)
.++..++.|+. ..+.+||..+.+-...- . .....-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677777652 35889998765433222 1 1112234445543 566888877543 588899
Q ss_pred cCCcee--EEEeccccCCeEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC-
Q 001396 867 ARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD- 941 (1086)
Q Consensus 867 ~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 941 (1086)
..+.+- +..+...... .+++...++++++.||.++ .+.+||..+..-.. +............-.++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~---~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD---VTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE---CCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE---ccCCCCCCCcccceeEEEEeCCC
Confidence 887542 2222211111 1223324888999888755 68999998865322 2210000000011234666666
Q ss_pred CCEEEEE-e--C-----CeEEEEEcCCccc-----eecccc---CCccCEEEEEEeCCCCEEEEEECC--------CcEE
Q 001396 942 QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP---ISSVPISQATFSCDCRMVFTSFVD--------GTLS 997 (1086)
Q Consensus 942 g~~l~~~-~--d-----~~i~vwd~~~~~~-----~~~~~~---~h~~~v~~l~fs~dg~~l~s~~~D--------g~v~ 997 (1086)
+++++.| . + +.+.+||+.+... ...+.. ...... +++...++++++.||.+ ..|.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5555554 2 2 3588999987762 111110 001111 22333347888888753 4599
Q ss_pred EEEcCCCcee
Q 001396 998 IHEASNLEVQ 1007 (1086)
Q Consensus 998 vWd~~~~~~~ 1007 (1086)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988776
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=90.99 E-value=15 Score=37.61 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=109.1
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.|..++..... .++. . ||.|..|-.....++.. + ......|..++...+-. +|. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p------------------~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-P------------------AATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-C------------------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-C------------------ccCCCCEEEEEeCCCEE-EEE-E
Confidence 45556555443 2444 4 78888887655433321 0 00123566777654433 333 4
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
||.|+.|-.....++.... .-...|..++...+- .+.-. ||.|..|-......+-.-......|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 8999999876543332111 113467777776543 23334 8999999755422221111123456666542
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
....++ -. ||.|..|-................|..++...+... +. . ++.|+.|-......+..-...
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~--al-~----~G~v~~wG~n~~gqlg~p~~~- 217 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL--AL-K----DGKVIAWGDNRYKQTTVPTEA- 217 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE--EE-E----TTEEEEEECCTTSTTCCCGGG-
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE--EE-E----CCeEEEEECCCCCCCCCCccc-
Confidence 222333 34 799999965543322111111234555554333222 22 2 556888864432111110011
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 603 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 603 (1086)
...|..++.... +.++.. ||.|+.|-...
T Consensus 218 --~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 --LSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp --GSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred --CCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 135666665543 333333 88888886554
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=90.84 E-value=9.7 Score=39.02 Aligned_cols=224 Identities=11% Similarity=0.042 Sum_probs=114.6
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
.|..++...... ++.. +|.+..|-......+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 455666544322 3333 78888886543211111011223677777754 334444 5 9999999765422111111
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEE
Q 001396 878 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 957 (1086)
Q Consensus 878 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd 957 (1086)
.-...|..++...+.. +... ||.|+.|-.....+.. +... .. ..|..++...+...+ .. ++.++.|-
T Consensus 99 ~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg---~~~~--~~---~~i~~i~~G~~~~~~-l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTT---VPAE--AQ---SGVTALDGGVYTALA-VK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTS---CCGG--GG---SSEEEEEECSSEEEE-EE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCC---CCcc--CC---CCeEEEEcccCEEEE-EE-CCEEEEec
Confidence 1134688887775533 3334 9999999876522111 0100 01 235555544433322 24 89999997
Q ss_pred cCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCC
Q 001396 958 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1037 (1086)
Q Consensus 958 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1037 (1086)
......+.. ...-...|..++...+-.. +. .||.|+.|-....-.+.. |.. ... ....++.-. .
T Consensus 166 ~n~~gqlg~-p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg~-------p~~-~~~--~v~~i~~G~--~ 229 (282)
T 3qhy_B 166 DNYFGQTTV-PAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTTV-------PTE-ALS--GVSAIASGE--W 229 (282)
T ss_dssp CCTTSTTSC-CGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTCC-------CGG-GGS--SCCEEEECS--S
T ss_pred CCCCCCCCC-ceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCCC-------Ccc-cCC--CceEEEcCC--C
Confidence 654322221 1111456877776554433 33 599999997654322211 100 011 123454442 2
Q ss_pred CEEEEEeCCCcEEEEccCCCC
Q 001396 1038 TQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1038 ~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
..++.. ||.|+.|.-....
T Consensus 230 h~~al~--~g~v~~wG~n~~g 248 (282)
T 3qhy_B 230 YSLALK--NGKVIAWGSSRTA 248 (282)
T ss_dssp CEEEEE--TTEEEEESTTCCC
T ss_pred EEEEEE--CCEEEEecCCCCc
Confidence 444444 9999999987655
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=8.7 Score=45.53 Aligned_cols=200 Identities=13% Similarity=0.061 Sum_probs=101.8
Q ss_pred CCCCcEEEEEEeCC----CcEEEEeCCCCceeEEe-e-----cCCcce-EEEeecccCCccEEEEEEcCC------eEEE
Q 001396 445 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAPV-YSLCPHAKENIHFIFSISVDG------KIKA 507 (1086)
Q Consensus 445 ~d~~~l~l~s~~~d----~~i~iwd~~~~~~~~~~-~-----~h~~~v-~~~~~~~~~~~~~l~s~s~dg------~i~v 507 (1086)
.++. +++.||.+ ..+.+||..+++-...- . ...... .+++.. ..++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 45888888877543322 1 011111 112211 11455777776543 4677
Q ss_pred EEcCCCceeEEecCCCCce-EEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec--ccccCCceEEEEEecC-
Q 001396 508 WLYDSLGARVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA- 583 (1086)
Q Consensus 508 wd~~~~~~~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~- 583 (1086)
||..+.+=...-....... .+++...+++.++.|+.+..+ .+.+||..+......-.. .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 7776643222211111111 223333488888888765543 799999988765433220 1101122334555655
Q ss_pred CCEEEEEEC--C-----CcEEEEEcCCCe------eEEEEcC-CCCCCCCceEEEecCCCEEEEEEC--------CCcEE
Q 001396 584 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDA-GGGLPENPRICFNKNGTLLAVIAN--------ENRIK 641 (1086)
Q Consensus 584 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~--------dg~i~ 641 (1086)
+..++.|+. + ..+.+||+.+.. ....... .... .-.+++...++++++.|+. ...+.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 555556654 2 458899998877 2222111 1111 1123333343777777764 34588
Q ss_pred EEECCCCCe
Q 001396 642 ILETPESNS 650 (1086)
Q Consensus 642 iw~~~~~~~ 650 (1086)
+||..+.+.
T Consensus 630 ~yd~~t~~W 638 (695)
T 2zwa_A 630 SLDPLSETL 638 (695)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCeE
Confidence 888877643
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=90.57 E-value=15 Score=43.34 Aligned_cols=239 Identities=9% Similarity=0.005 Sum_probs=119.2
Q ss_pred ECCCCCEEEEE-eC----CCEEEEEEecCCCccccceEec-cccc------cEeEEEecCCCCcEEEEEE----------
Q 001396 398 WSPDGSLLGVA-YS----KHIVQLYAYHGGSDARQQLEID-AHVG------NVNDLAFSAPCKQISVITC---------- 455 (1086)
Q Consensus 398 ~spdg~~las~-~~----d~~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~v~~s~d~~~l~l~s~---------- 455 (1086)
++||+++++.+ |. ...++++|+.+++.+... +. .-+. ....++|..++. ++++.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSS 212 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTT
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcC
Confidence 88999998876 22 237999999998765421 11 0000 113457773433 44432
Q ss_pred eCCCcEEEEeCCCCc--eeEEeecCCcceE-EEeecccCCcc---EEEEEEcC---CeEEEEEcCCCce-eEEecCCCCc
Q 001396 456 GDDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLG 525 (1086)
Q Consensus 456 ~~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~s~d---g~i~vwd~~~~~~-~~~~~~~~~~ 525 (1086)
+....|+.|.+-+.. -...+.+....+. +.....++... .+++.+.+ ..+.+.+...... ...+......
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 123468888776653 2234444444332 22232232222 34544422 3455556543222 2333333221
Q ss_pred eEEEEEecCCCEEEEEeeCC------CCceeEEEEeCCCCe-------eeeE-EecccccCCceEEEEEecCCCEEEEEE
Q 001396 526 CTRMAYSANGRRLFSCGTSK------EGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAG 591 (1086)
Q Consensus 526 i~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s 591 (1086)
.+..+.++.+++....+. -..+.|...|+.++. ..+. +.... ...+..+.+..+ ..+++..
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 293 --TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp --EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEE
T ss_pred --eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEE
Confidence 233455666655432210 025568888887642 1222 32222 356778888875 5666666
Q ss_pred CCCc--EEEEEcCCCe-eEEE-EcCCCCCCCCceEEEecCCCE-EEEEEC---CCcEEEEECC
Q 001396 592 DDHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTL-LAVIAN---ENRIKILETP 646 (1086)
Q Consensus 592 ~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~-l~~~~~---dg~i~iw~~~ 646 (1086)
.++. +.++++.+++ .... +..... ..+.....++++.. +++.+. -+.+..++..
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6664 6777776665 2333 333221 22444555566544 443333 2556666665
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.60 E-value=26 Score=37.93 Aligned_cols=258 Identities=11% Similarity=0.054 Sum_probs=119.6
Q ss_pred CCCeeEEEeec--CCCEEEEEeCC----eEEEEEccCceEEEEEc------C--------CCCCeEEEEEcCCC-CCEEE
Q 001396 796 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA 854 (1086)
Q Consensus 796 ~~~v~~l~~s~--dg~~l~~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la 854 (1086)
...|.+|++.| ++.+.+.+..| .|... ...++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666666554 33332 22222211111 1 11247789998633 34455
Q ss_pred EEeCCCeEEEEEcCCceeEEEec---c----------------ccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCce
Q 001396 855 IGMDDSTILIYNARSSEVISKLE---G----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
++...+.|...+= .|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+ +.++
T Consensus 133 ~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT- 209 (394)
T ss_dssp EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence 5555565554422 222211111 0 1235788999873 34444444444344332 2222
Q ss_pred eeeeeeec-cCC-C-c----cCCCCceEEEEecC-CCEEEEEeCCeEEEEEcCCccceeccccCC-c---cCEEEEEEeC
Q 001396 915 QTCRSLQT-PDG-V-M----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 982 (1086)
Q Consensus 915 ~~~~~~~~-~~~-~-~----~~~~~v~~~~~s~d-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 982 (1086)
....+.. ... . . .....+..+++.|+ ...|.++..+.|...+- .++....+...- . ..+..+.+.|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 1111111 000 0 0 00124788999986 35566665666555442 233322221111 1 3456788876
Q ss_pred -CCCEEEEEEC-----------CCcEEEEEcCC-CceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001396 983 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1049 (1086)
Q Consensus 983 -dg~~l~s~~~-----------Dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v 1049 (1086)
+...|..+.. ++...+|.... |+--..+. .-++....-..+...+++++|.++..|.+++.+|.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3334444432 33345555444 33222222 112221000112224578888555667777766664
Q ss_pred EEEccCCCCCCCCC
Q 001396 1050 YVIEPNEPGDTWAV 1063 (1086)
Q Consensus 1050 ~vw~~~~~~~~~~~ 1063 (1086)
. .-.+.+..|..
T Consensus 366 ~--~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 W--ASADEGEHWQC 377 (394)
T ss_dssp E--EESSTTSBCEE
T ss_pred E--EECCCCCCceE
Confidence 4 44556677764
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=13 Score=39.64 Aligned_cols=169 Identities=13% Similarity=0.191 Sum_probs=95.3
Q ss_pred eEEEEEccCc--eEEEEEcCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCceeEEEec-----
Q 001396 818 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 877 (1086)
Q Consensus 818 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 877 (1086)
+|.+||+.+. +.++++.-. ...+..+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 887776432 2457788887 21 134444444 45789999999887544442
Q ss_pred ---------cc----cCCeEEEEEeCC----CCEEEEEeCCCcEEEEECCCCceee---eeeeecc--CCCccCCCCceE
Q 001396 878 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQT---CRSLQTP--DGVMTLAPSETH 935 (1086)
Q Consensus 878 ---------~h----~~~v~~l~~spd----g~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~--~~~~~~~~~v~~ 935 (1086)
|. ...|..|++||+ ++.|....-.+ -++|.+.+..... ...++.. ++.. ..-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~---s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKY---NDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTT---CCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCC---CCcce
Confidence 11 136888999998 77777665544 3556554311110 0011111 1100 11234
Q ss_pred EEEe-cCCCEEEE-EeCCeEEEEEcCC-c---cceeccc-cCCccCEEEEEEeCCCCEEEEE
Q 001396 936 IQFH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWF-PISSVPISQATFSCDCRMVFTS 990 (1086)
Q Consensus 936 ~~~s-~dg~~l~~-~~d~~i~vwd~~~-~---~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~ 990 (1086)
+++. .+|.+.++ ...+.|..|+..+ . +....+. ...-..+..+.+..+|.+.+.+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5675 56766666 5778899999875 1 1111111 1123456777777777655554
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=30 Score=36.84 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=92.0
Q ss_pred cEEEEeCCCC--ceeEEeecC------CcceEEEeec-ccC-----CccEEEEEEcCCeEEEEEcCCCceeEEec----C
Q 001396 460 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A 521 (1086)
Q Consensus 460 ~i~iwd~~~~--~~~~~~~~h------~~~v~~~~~~-~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----~ 521 (1086)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++...++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778888888 887776432 3456777776 211 23333444467889999998876654331 1
Q ss_pred C--------------CCceEEEEEecC----CCEEEEEeeCCCCceeEEEEe---CCCCeeee--EEecccccCCceEEE
Q 001396 522 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV 578 (1086)
Q Consensus 522 ~--------------~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~ 578 (1086)
. ...+..++++|+ ++.|....-++. .++-.. ++...... +..+.......-..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 1 125778899998 777776654221 222222 11111111 111212001233455
Q ss_pred EEe-cCCCEEEEEECCCcEEEEEcCC-C---eeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001396 579 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV 633 (1086)
Q Consensus 579 ~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 633 (1086)
++. .+|..+++--+...|..|+..+ . .....+...........+.+.++|.+.+.
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 675 5666666666888899999876 1 12233322223334556666555543333
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.54 E-value=52 Score=33.31 Aligned_cols=197 Identities=6% Similarity=0.016 Sum_probs=108.4
Q ss_pred EEEeecCCCEEEEEeCCeEE---EEEccCceEEEEEcCCCCCeEEEEEcCC-CCCEEEEEeCCCeEEEEEcCCc------
Q 001396 801 CFALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSS------ 870 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~lasg~~dg~v~iwd~~~~------ 870 (1086)
.+..+....+++..+.|.++ +|++..++... +......|..+.. ++ +..+++..+.+|.++-..+..-
T Consensus 29 ~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 29 ILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp EEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred EEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 33344445555666667644 44544332211 2224556766644 42 4568999999999999987653
Q ss_pred eeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee-----eeeeeeccCCCccCCCCceEEEEecCCCEE
Q 001396 871 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRF 945 (1086)
Q Consensus 871 ~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 945 (1086)
.....+.. .+.+..+........++..+..|.+..+....-... ....+....+ ..|..+...+++..+
T Consensus 107 ~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 107 MPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYL 180 (276)
T ss_dssp EECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEE
T ss_pred eEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEE
Confidence 22222332 345666666666678888899998888876532110 0111211111 346665555555555
Q ss_pred EE-EeCCeEEEEEcCCccc-------eeccccCCccCEEEEEEeCCCCEEEEEECCCcEEE--EEcCCCcee
Q 001396 946 LL-VHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNLEVQ 1007 (1086)
Q Consensus 946 ~~-~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~v--Wd~~~~~~~ 1007 (1086)
+. +..|.++...+..-.. +..+ ...+.+..+....++..++..+.+|.+.. +++..-...
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLS 250 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBC
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCc
Confidence 44 7888888887653221 2221 12344555544444445666667777776 766554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1086 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 4e-16
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 370 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 429
K+WD+ +N + + P+G+ +L+ +
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489
+ G + ++FS + + + DD VWDA+ R GH V L
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 490 KENIHFIFSISVDGKIKAW 508
+ + S D +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)
Query: 453 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 510
++ D + K+WD G +F GH + + ++C N + S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257
Query: 511 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570
D +D G T +++S +GR L + W+ + G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310
Query: 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600
N VS + + D +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)
Query: 748 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 807
+ V + P L +S +L+ R G T + + + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237
Query: 808 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 864
+ S + + TS++F+ ++ G DD +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 865 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908
++A ++ L GH RV+ L +D + + D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)
Query: 845 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904
D + G D++ +++ R GH + + F N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 905 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 963
++D+ S +T + F K L ++ + +++A +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 964 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 998
+S + D V T D L I
Sbjct: 305 AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+ + W D LL A + ++ + + I V A++ ++
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
+ +I G+ S E G Y + + I + S D W +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
+ + ++ + + R S ++ W+ EG ++T+ G
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225
Query: 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 631
+ ++ + F + DD +++D+ Q L T + + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 632 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684
++ + + +++ + + L V G + + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 2e-09
Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 381
QT S ++ F P + TG D
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261
Query: 382 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 441
T + + V +S G LL Y ++ + + H V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318
Query: 442 AFSAPCKQISVITCGDDKTIKVWD 465
+ + T D +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)
Query: 426 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485
R + + H+ + + + + + ++ D + +WD+ T ++ ++ + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545
+ +++ +D + + V G T TS
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605
+ + E+ V + ++ D K+WD+ +
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642
T ICF NG A +++ ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 8e-06
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 819 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 876
L+ V T ++ F P + N A G DD+T + A +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 877 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 936
+ +T + FS + +L++ D VWD L D + + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318
Query: 937 QFHKDQTRFL 946
D
Sbjct: 319 GVTDDGMAVA 328
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.2 bits (183), Expect = 5e-15
Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)
Query: 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 490
+ H V + F + ++ +D TIKVWD TG + +GH V +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 491 ENIH----------------------------------------FIFSISVDGKIKAWLY 510
+ I S S D IK W
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 511 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 570
+ + + + +G + SC + + W + K + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186
Query: 571 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613
+S +L+ D IK+WD++ L T+
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 614 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 673
+ F+ G + A++ +++ + + + L + +
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304
Query: 674 GAGIANGSVSV 684
G + +V V
Sbjct: 305 VTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 8e-15
Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 9/188 (4%)
Query: 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSML 380
+T + + TL+ +N +W V + + +R +
Sbjct: 137 KTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Query: 381 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 440
+ G L ++++ G + + H V
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRG 252
Query: 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 500
+ F + K I ++C DDKT++VWD + H V SL H ++ + S
Sbjct: 253 VLFHSGGKFI--LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP--YVVTGS 308
Query: 501 VDGKIKAW 508
VD +K W
Sbjct: 309 VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 8e-15
Identities = 45/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)
Query: 317 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 364
P+ + + G SP + FHP ++++ + +WD +G
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 365 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412
+ + +V+ V P+G + A
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 413 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 472
++++ H V + + I +C +D+T++VW T
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178
Query: 473 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 514
H V + + + F+ S S D IK W +
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 515 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 574
+ + + + G+ + SC K L W+ +T +
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT----LRVWDYKNKRCMKTLNA---HEHF 291
Query: 575 VSVVHFDTAKDQILAAGDDHVIKIWD 600
V+ + F ++ D +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)
Query: 736 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 795
N G I + +++ +W + V + +++ T S
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209
Query: 796 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854
K +L S S I ++ V T ++T++ + F+ I
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263
Query: 855 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908
DD T+ +++ ++ + L H VT L F +V+ D + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)
Query: 800 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 847
+++ + S S + +++V T + + +++ P
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 848 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 899
+ G D TI +++ + + L GH V G++F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 900 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 946
D + VWD + ++L + + T + FHK +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)
Query: 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 900
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73
Query: 901 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 960
+ + + + + + + + + +
Sbjct: 74 --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010
+ F + + D ++ + D T+ + + E + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)
Query: 865 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 924
+ R E + L GH VT ++F +++VS+ DA I VWD + R+L+
Sbjct: 3 WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59
Query: 925 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 984
S I F + + +S + +
Sbjct: 60 D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 985 RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1044
+ ++ D T+ + E T H + T A
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162
Query: 1045 TNGEVYV 1051
+ V V
Sbjct: 163 NDQTVRV 169
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.5 bits (176), Expect = 7e-14
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)
Query: 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 388
++ P + G+ +WD +G + + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255
Query: 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 439
SV VV++ DG + V+L+ ++ ++ V
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 440 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 495
+A + + I ++ D+ + WD +G+ +GH V S+ ++
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 496 IFSISVDGKIKAW 508
+ S D K + W
Sbjct: 371 FATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.1 bits (175), Expect = 9e-14
Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)
Query: 532 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 590
+ + + + + +++ +N + L H + V V F + LA
Sbjct: 22 DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79
Query: 591 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 650
G + +++ ++ L+ + ++P E+ +
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113
Query: 651 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710
++ +R + +P G +A G+ + +I + + + L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
Query: 711 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 770
PS + + T V + + S +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 771 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 817
+V + + + + +++V +++ + S S
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 818 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877
+ +T + S+A ++ I G D +L ++ +S + L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Query: 878 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 909
GH V + ++ N+ + GD + +W
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.7 bits (161), Expect = 5e-12
Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)
Query: 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 381
++ +S + F L G N T ++ V+ L R
Sbjct: 56 HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112
Query: 382 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 441
T+ + + V +SPDG L +++++ +++ + +
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167
Query: 442 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 501
+ +++ D+T+++WD TG + + +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225
Query: 502 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 554
D ++ W ++ D+ + ++ +G+ + S + + + ++
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 555 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609
++ K G + V V + IL+ D + WD L
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 610 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 642
+ + + A + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 845 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 897
+P D IA G D + ++++ + ++ +L+ GH V +VF+ +VS
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 898 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 952
D + +W++ ++ + ++ L +
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 953 LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 998
+ ++ + L + SV ++ ++ + + T D I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)
Query: 331 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 390
P +D L L++ + D+ L T+
Sbjct: 18 PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63
Query: 391 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 436
V V +S DG L +K + S A + E +
Sbjct: 64 -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 496
+ + FS K + T +D+ I++WD +GH +Y + +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178
Query: 497 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556
S S D ++ W + + T +G+ + + + + E
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 616
+ + +SV V F +++ D +K+W++ +
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 617 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 651
+ +N + + + + + N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)
Query: 776 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 835
LY P + V + V C S + YL + +Y V + +
Sbjct: 42 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101
Query: 836 PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877
S S+ F+P D +A G +D I I++ + +++ L+
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160
Query: 878 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 937
GH + + L + + + LVS GD + +WD+ S++ + ++P +
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 938 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 997
R + V ++ + E L + + F+ D + V + +D ++
Sbjct: 221 AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279
Query: 998 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1051
+ N + + + + ++ + ++ G + V
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)
Query: 835 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 890
P P L + + ++YN I K H+ V + FS+
Sbjct: 14 KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72
Query: 891 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 950
L + G + V+ V + S + + + R +
Sbjct: 73 DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131
Query: 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1010
+ E ++ W + + F G + + + V+
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 1011 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1051
L T T S +A P A G + V V
Sbjct: 192 LRTGQCSLTLSIEDGVTT-VAVSPGDGKYIAAGSLDRAVRV 231
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.3 bits (165), Expect = 1e-12
Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)
Query: 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 898
+ A+N D IAI ++ + IY + + +L+ H+ +VTG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 899 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 958
G D +VW + G + + + + + + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127
Query: 959 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1018
+ K + + + ++ D I A EV+ R T +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 1019 TTSC 1022
Sbjct: 188 MPFG 191
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 1e-11
Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
++ W+ D + + + + H V +Y G Q E+ H G V + ++ +I
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
+TCG D+ VW + + + C N S I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 512 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 556
S + R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 616
S+ V V F ++ D + + D +K + T+ +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 617 PENPRICFNKNGTLLAV 633
+ F +L+A
Sbjct: 245 -PLLAVTFITESSLVAA 260
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)
Query: 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 385
VG+ + ++ + + + L
Sbjct: 96 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155
Query: 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 445
+ ++S + + E + G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211
Query: 446 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 505
++ D T+ + DA + P+ ++ + ++ + D
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266
Query: 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 565
+ YDS ++ + + + R K+ S EG+
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318
Query: 566 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 605
L NSVS + Q G D + IWD+ ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 860
+ + + L+ + L+ + +D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 861 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 910
+A + + H V+ + + ++G D + +WDV
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.002
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 422 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 472
GS A H +V+ ++ + K T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.1 bits (159), Expect = 7e-12
Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)
Query: 562 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619
+ T +G H + ++ + F+ + ++ DD +I+++D + L + G
Sbjct: 5 RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 620 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 678
+ + G L++ R+ ++ V + + G
Sbjct: 59 --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 679 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 738
+ ++ V + PKE P+ E + PL E + R +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 739 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 791
G + N + + + LS R DTT
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 792 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 846
Q L + ++ S+ +++
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 847 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 905
+N++ G ++ IYN RS +++ + + + ++ + F ++ + D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Query: 906 VWDVD 910
+ +D
Sbjct: 349 LEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 3e-09
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 434 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 492
H N++ + I + G + +++ +G ++ ++S+ K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 493 IHFIFSISVDGKIKAWLYD 511
+ ++ DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 900
T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILVS
Sbjct: 17 TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72
Query: 901 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 960
D + VWD+ +++ + + L +++ +
Sbjct: 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 961 LTCLKQWFPISSVPISQATFSCDCRMVFT 989
+ + P+ T + V
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
VIT DDK I+V+D++ GH V++L + + S S D ++ W
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
++ + + S++ + W + + + +
Sbjct: 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137
Query: 572 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 602
H+ V H + H+ + ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)
Query: 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 381
L ++ + L+ T+ + +
Sbjct: 47 LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 382 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 439
K G N + VW P S + +H L + + + H+ +V
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 440 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 499
V++ D T+ VWD Y GH +Y S
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219
Query: 500 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559
S+D I+ W + + + + G S +
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271
Query: 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619
R + ++++ + D IL +G ++ I+++ +L+
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 620 PRICFNKNGTLLAVIANENRIKI 642
+ F TL+A + + + +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 397 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 456
+ + + ++++Y + L++ H G V L ++ +++
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71
Query: 457 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508
D+T++VWD G T+ FEGH + V L +NI +I + S D + W
Sbjct: 72 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 3e-10
Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)
Query: 554 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611
W E + +G H+ ++ + F ++I++ DD+ +K+W + L T+
Sbjct: 1 WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Query: 612 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 671
++ + + +K+ + + +R + ++
Sbjct: 55 G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110
Query: 672 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 731
V+G+ A V E + V A + + + +
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159
Query: 732 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 791
++ + L + + +S T + R++ G
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216
Query: 792 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 850
S + D L S + + ++ + T + + T+ P+ +++ +
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 851 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 901
N + DD T+ +++ ++ E I L G V + S+ + +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 902 AQIFVWDVD 910
++ V D D
Sbjct: 331 TKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)
Query: 342 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401
++ G++ +W +G+ +R G S + ++ VW+ +
Sbjct: 28 NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85
Query: 402 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 451
H + H DA + + +
Sbjct: 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145
Query: 452 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 507
V++ D +KVWD T + ++ +GH VYSL + S S+D I+
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201
Query: 508 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 567
W ++ + G L S +S + W+ G +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255
Query: 568 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 624
++V+ + F+ K+ ++ + DD +K+WD+ ++ L T+++GG RI
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 625 NKNGTLLAV 633
+ + AV
Sbjct: 314 SNTKLVCAV 322
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)
Query: 423 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482
+ + + H +V C +++ DD T+KVW AVTG + GH V
Sbjct: 4 GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 483 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 537
+S + + + + + V R
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 538 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 577
++ T + V + +K LQ ++ V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 578 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637
+++ D I++WD+ + T+ ++ +L +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236
Query: 638 NRIKI 642
+ +KI
Sbjct: 237 STVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
V++ D +I+VWD TG+ ++ GH + + + + S + D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
+ P + + + S +G L W+ G R L+
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 572 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 603
V + K + + + D +
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 7e-04
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)
Query: 848 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 907
N I G DD+T+ +++A + + + L GH+ V D NI++S D + VW
Sbjct: 25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82
Query: 908 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 967
+ + T + + +D T + E +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130
Query: 968 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1027
+ + D R V + D + + + L +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177
Query: 1028 HAIAAHPLKPTQFAVGLTNGEVYV 1051
+ + + G + + V
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 60.5 bits (145), Expect = 4e-10
Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)
Query: 580 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 637
+ ++ + + + D+ + + P + V+ N
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61
Query: 638 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 693
I ++ + A + S ++ G D
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 694 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 753
P + V + KP+ P Q L+ + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166
Query: 754 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 813
T++ P + S +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226
Query: 814 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 872
+ T KT + + +P D N I + + Y+ + ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284
Query: 873 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 932
I + F + L G + V++ D + ++++ P G M+
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341
Query: 933 E 933
+
Sbjct: 342 Q 342
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 5e-08
Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)
Query: 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 377
++ P + P T ++ + GD D+++ + F N
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86
Query: 378 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 426
G S+ SPDG + + Y
Sbjct: 87 -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135
Query: 427 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480
+ + V + + + K +R
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195
Query: 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540
+ E + L G T A+ L+
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255
Query: 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 596
G + + + A Q ++ ++ V FD D++ G + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315
Query: 597 KIWDMNKVQLLTTIDAGGG 615
+++ + ++ + I GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 0.003
Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)
Query: 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 375
+ + P + + + + K ++ D+
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 376 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 435
+ D + SP + + + Y + ++
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291
Query: 436 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482
+AF + + G + V++ T + + + G +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)
Query: 322 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 364
E S + + ++ G +WD N+ +
Sbjct: 9 HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 365 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 422
I + + L + + ++ + ++
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 423 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482
+D + + H VN + F + D+TIKVW+ T + GH +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542
L + S S D I+ W D G + +R+ S
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234
Query: 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 596
+ + W+ R G V + FD + QI+++ D I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289
Query: 597 KIWD 600
IWD
Sbjct: 290 LIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)
Query: 434 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 493
V L + +++ D TIK+WD T GH V L + I
Sbjct: 14 TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 553
+V +A + S
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119
Query: 554 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 613
W+ + L + +V D I++A D IK+W+ + + + T++
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176
Query: 614 GGLPENPRICFNKNGTLLAVIANENRIKI 642
+ C L+ +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 800 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 858
L D + S S I L+ + + + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236
Query: 859 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908
D I +++ ++ + L HS RV L F + +VSS D I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)
Query: 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 900
L + D+ I G+ D+TI I++ + E L GH+ V L + + + I
Sbjct: 19 YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69
Query: 901 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 960
D + + + + +A+++
Sbjct: 70 -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1020
T + + + D + + ++ D T+ + S E
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172
Query: 1021 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1051
L+ + IA + G ++ + +
Sbjct: 173 -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 3e-09
Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)
Query: 329 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 388
+ + + P + + G+ F+R D G +
Sbjct: 18 NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61
Query: 389 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 441
V V +SP L V ++ + ++ E G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 442 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 501
++ +++ V+ G D +G+ GH + + + +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 502 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 561
+ + D G + + + + ++ G
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240
Query: 562 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621
+ + Q + G D I++WD+ + + N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 622 ICFNKNGT-LLAVIANENRIKI 642
+ G + ++ + +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 452 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508
T G D TI+VWD T + ++ + + A N I S+S+DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)
Query: 829 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 880
++ I+PP P T L+++P N + + + + S+V + + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 881 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 938
VT + FS L S ++ VW + LA + I +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 939 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 986
+ R +V E +S
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 846 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 902
+ D+ A D+TI +++ +S+ + K +++ V + ++S D
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 903 QIFVWDV 909
+ +++
Sbjct: 319 TLNFYEL 325
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 8e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+ + + P G + + + + ++ H V L F+ K
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508
++ G D + W G+ + + V S + +I + S D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 842 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 901
SL F D+ + + I + S V S +V+ GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327
Query: 902 AQIFVWDV 909
+ V++V
Sbjct: 328 KKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)
Query: 370 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 427
KVWDI + + + PDG L V + ++ + +
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 428 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487
+ S + G+ + + +T + G + C
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189
Query: 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547
+ +++ +D +++W +D + Y G L S
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248
Query: 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 607
E V L L + V + F ++ G D+++ W +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642
+ + + + + + + +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 455
+ ++ G +++ + G + +V S K I +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324
Query: 456 GDDKTIKVWD 465
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 381 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 440
F+ A+ P S + + DG + V + + G +Q+ H V
Sbjct: 3 FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56
Query: 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 486
+ S P + + G +KVWD + S
Sbjct: 57 VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.001
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)
Query: 858 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 917
D+ I R + I+ L H + V + S+ + + GG + VWD+ G ++
Sbjct: 30 PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87
Query: 918 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 977
S + D ++ E + ++S +
Sbjct: 88 VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 978 ATFSCDCRM 986
+
Sbjct: 145 YALAISPDS 153
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 526 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 585
+ ++ G+ S G L W GA + +SV
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319
Query: 586 QILAAGDDHVIKIWD 600
I+ D +++
Sbjct: 320 YIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.004
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 800 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 858
+ + S +++ + +I S S + D+ I G
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISV-DDKYIVTGSG 326
Query: 859 DSTILIYN 866
D +Y
Sbjct: 327 DKKATVYE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 1e-08
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 892
+ P + +++A G D+ I IY+ + ++I L H V L++
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269
Query: 893 NILVSSGGDAQIFVWDV 909
+ LVSSG DA I W+V
Sbjct: 270 STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 490
I H + L + +I+ D I W + + + H + SL
Sbjct: 9 ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 491 ENIHFIFS 498
+ I
Sbjct: 58 QEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 453 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 508
T D I ++ + H V +L + S D IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 431 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467
++AH VN+L + P +++ G D IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 871 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 910
EV+ + GH+K +T L + L+S D +I W
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.002
Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)
Query: 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 900
T+L NP + G D I+ +++ S + HS + L S A S
Sbjct: 17 TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66
Query: 901 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 954
D + + T + ++ L
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 955 ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 996
+++ +L S + S + V G +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 997 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1056
+++ + EV+ + + ++ A G + +++
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 1057 PGDTWAVL 1064
P L
Sbjct: 247 PMKIIKAL 254
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 22/329 (6%)
Query: 584 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 642
+D ILA + + D K+ + I P G + N+ +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 643 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 702
++ L +ST + +++ D K E V E
Sbjct: 61 IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107
Query: 703 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 761
+ A + +I+ L + G ++ G L P
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAG 164
Query: 762 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 821
+ + Y + + A + G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224
Query: 822 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 881
+ + + S A NP + + ++ + I ++
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280
Query: 882 RVTGLVFSDALNILVSSGGDAQIFVWDVD 910
+ S + + G + +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)
Query: 370 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 427
V D ++ K + D G + + +P G + S+ +V++ G + R
Sbjct: 14 VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 428 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 486
L A S K +++ + ++ + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 487 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 539
+ + ++ + D + +L +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 540 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 586
+ + GL +++ V +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 587 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 645
A G +V++ +D+ K + + + + +G+ + + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (102), Expect = 7e-05
Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)
Query: 323 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 382
T+ + +PM P D+ +G+ L +
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77
Query: 383 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 434
+ S+ SPDG L + S ++L + ++ + +
Sbjct: 78 ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133
Query: 435 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 487
+ LA++ + + V+ ++ + + V++
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193
Query: 488 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 547
+ ++ D G D FS +
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 548 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601
+ L ++ + A + +S V+ T + G + +D
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
Query: 602 NKVQLLTTIDAGGG 615
++ +D G
Sbjct: 309 ETLEKKGQVDLPGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 0.002
Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)
Query: 452 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 509
++ + V D + + + G +++ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62
Query: 510 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564
+ D A S +G+ L + E E + A+
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 565 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605
+ ++++ + ++ G D + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.003
Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)
Query: 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 384
S P + + G + + + + + G +M +T
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
Query: 385 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 441
+ + V + + + + ++++ + ++ + +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285
Query: 442 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485
S + G + +DA T + + G SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)
Query: 307 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 365
F +T+ F P+T + + + P + N V S
Sbjct: 2 EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52
Query: 366 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 425
I + SP G V+++ +
Sbjct: 53 I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93
Query: 426 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485
+ I G V D + + + A +
Sbjct: 94 LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151
Query: 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545
I S S D + + + + + Y+ +G S G
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211
Query: 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605
+ G + SV + + +I +A D IKIW++ ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271
Query: 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 642
+ TI G + E+ ++ L I+ I
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 9e-07
Identities = 18/160 (11%), Positives = 34/160 (21%), Gaps = 7/160 (4%)
Query: 832 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 886
+ P P TA L P + I S + S HS + T
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64
Query: 887 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 946
S + S + +WD ++ G + ++ +
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 124
Query: 947 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 986
L + + +
Sbjct: 125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 846 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 902
D IA D TI I+N + +V + ++ + G++++ LVS +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303
Query: 903 QIFVWDVD 910
I + +
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 508
+ + DKTIK+W+ T + + + SIS +G I
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.7 bits (124), Expect = 1e-07
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 434 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 492
H + L+ SA K + + + I WD TG F + H + + +K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 493 IHFIFS 498
+ +
Sbjct: 69 LFTVSW 74
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 841 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 899
T+L+ + D + + I ++ + + H+ +TG+ + L +
Sbjct: 16 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73
Query: 900 GDAQIFVWDVDGWGIQTC 917
D + V G G+ +
Sbjct: 74 WDDHLKVVPAGGSGVDSS 91
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 871 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 930
+ GH+K +T L S L S+ + I WD+ + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 931 PSETHIQFH 939
+ F
Sbjct: 63 TTSKGDLFT 71
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 845 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 902
DN +A G D++++++N S I H+ V +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Query: 903 QIFVWDV 909
I W+V
Sbjct: 291 NIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)
Query: 319 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 364
++ Q G + ++ L G WD+++G
Sbjct: 3 SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 365 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 422
++ + L S V LG+A S A
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 423 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482
A V + + A + G + ++G+ + P
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 542
N F+ + K+ + + ++ ++A +
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 600
T S +V WN ++ + +SV+ V + I++AG D IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 432 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 480
AH ++ ++ ++C D +KVWD + H
Sbjct: 11 KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 512
V + + + S G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 5e-07
Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)
Query: 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 623
+ V ++ D +K+WD + D +
Sbjct: 15 ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72
Query: 624 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 676
L+A + + + +L +++K S +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 736
V D K ++S ++ E Q + + + +
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192
Query: 737 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 794
+ G + V + L + + + + PQ + +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252
Query: 795 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854
+ ++ + S S + + L S SL+FN +
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305
Query: 855 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 910
D + ++ ++ E I+ L H + L + + L G V+DV
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359
Query: 911 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 941
G ++ + + + + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)
Query: 355 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 414
+WD ++ + + V + + L+ +
Sbjct: 38 VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91
Query: 415 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 464
Y + + L+ D + L + A ++ ++ T +W
Sbjct: 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151
Query: 465 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 509
+ S + +P L + + I + +G ++
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211
Query: 510 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564
+L +++ R + L + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 565 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 612
+ V + F+ + + + +AG D ++ WD+ + +TT++
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331
Query: 613 GGGLPENPRICFNKNGTLLA 632
E + +++G LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)
Query: 299 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 358
E S + + ++ + S S+D L+ G N G + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212
Query: 359 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 418
++ + L+ + I + + + + G +
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272
Query: 419 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478
++ L AH V L+F+ + + + G D ++ WD T R + H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330
Query: 479 GAPVYSLC 486
+
Sbjct: 331 CDDIEIEE 338
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)
Query: 589 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648
+ D +++ ID G P +G+ +A A+ +I +
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77
Query: 649 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 708
+ V+ ++ P + G S+ D K + + S A V+
Sbjct: 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136
Query: 709 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 768
A + + G
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196
Query: 769 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 828
+ T + + S + +L + +
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248
Query: 829 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 888
+ + + +++ +A++ E ++K E + +
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307
Query: 889 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 926
S + + S GD +++ D ++ L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 403
L+ T G D++SG F+ + + +V +
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261
Query: 404 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 457
+ + + + ++L ++ + S K +
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321
Query: 458 DKTIKVWDAVTGSRTYSFEGHG 479
DKT+ + DA +G S G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (93), Expect = 9e-04
Identities = 21/229 (9%), Positives = 48/229 (20%), Gaps = 38/229 (16%)
Query: 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAPCKQIS 451
P + + G + +N A+S ++
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL- 209
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
+ I D +G + + + L D
Sbjct: 210 -VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 571
K F+V + G ++
Sbjct: 269 Q--------------------------RDEWRHKTASRFVVVLDAKTGERLAKFEM---- 298
Query: 572 HNSVSVVHF--DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 618
+ + ++ D + D + I D + L +++ G P+
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)
Query: 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392
+ P + LL WD + V+ +
Sbjct: 16 DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58
Query: 393 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
+ + + + V + + G + +A++G + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
+ + + V + N + + +++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 512 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 556
R P S +GR + + + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 616
+ L NS+ F + AG D +I W++ + +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293
Query: 617 PENPRICFNKNGTLLAVIANENRIKI 642
E+ + + +L + +++ K
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)
Query: 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 451
++ + P SLL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 452 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 511
+ + +KV + S ++ S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 512 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 570
G + S S + + L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 571 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 621
++ V ++ + D + + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 622 ----ICFNKNGTLLAVIANENRIKI 642
I F+ L ++ I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 6e-06
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 393 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 440
+ + + + V + + D R L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 441 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 499
+ FS K + T G D I W+ T + +F + V + +
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 500 SVDGKIKAW 508
+ D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 835 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 891
P + + P +++ I D ++ +Y L + + F D
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 892 LNILVSSGGDAQIFVW 907
++ + G +
Sbjct: 68 TDLQIYVGTVQGEILK 83
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 871 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 928
+++ + ++ + + ++L+ + D + V+ D + +SL+ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 929 LA 930
Sbjct: 62 CN 63
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)
Query: 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 383
++ F V ++ V + + D+ S
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 384 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 443
+ + + V + A K ++ Y ++ N+ DL
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322
Query: 444 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482
SA K + + DD I + + E P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)
Query: 292 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 351
D+SP F S G+ D T + E + + GT G
Sbjct: 8 EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65
Query: 352 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 388
D G++D +G+ + T + R
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 389 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 444
+ S + + + + Y + D + A N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 445 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 497
++ D V + + + +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 498 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556
++ ++ + P + + + L++++
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 611
+ N+++ + + ++ DD I + + K + T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)
Query: 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 389
S + DF P+ L+ + G + DV+ L +
Sbjct: 4 SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41
Query: 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 444
+ + V D + + ++ L Y + + + + ++GNV +
Sbjct: 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99
Query: 445 ---------------------------------------------APCKQISVITCGDDK 459
+ +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 519
I V+D + + + P + ++ +S + L +
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216
Query: 520 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 572
+ + + R L+
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 573 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 632
SV A + V+ +D+ ++ + L + + +
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330
Query: 633 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 664
V ++ +I LE PE + + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 845 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 904
+ + +L Y+ ++ K+ +T L S ++ D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 905 FVWDVDG 911
+ + ++
Sbjct: 339 YTFPLEK 345
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (111), Expect = 9e-06
Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)
Query: 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 446
G +V+ S G L V V + + EI
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119
Query: 447 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 496
K + + D T G H + + FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 497 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555
++ GKI Y L + + + R + ++ +
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238
Query: 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606
AI+ T + VH + D + + +
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.003
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)
Query: 835 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 893
P T + N+ ++ D I + + + E+ + L+ V S +
Sbjct: 16 APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74
Query: 894 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 951
L G D ++ + D+ T ++ ++ S + +
Sbjct: 75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131
Query: 952 HLAIYEAEELTCLKQWFPISSVPISQAT 979
I + E L K Q
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)
Query: 327 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 386
+ LL V ++ +C +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171
Query: 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 446
PG + + S SL + Q A N + A
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 447 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 500
I +G + +F G + + +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 501 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559
+ S+G + G + + +G
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329
Query: 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615
+ V+ I+D Q ++++ G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.2 bits (103), Expect = 5e-05
Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)
Query: 383 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 432
L G ++ V GS +A V+++ +I+
Sbjct: 57 VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113
Query: 433 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 485
V+ + A + + S +
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171
Query: 486 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 532
P A + S + A + A A M
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227
Query: 533 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 587
A + G + + +E G Q+ + + T +
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287
Query: 588 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 644
+ Q I G I ++G + + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 645 T 645
Sbjct: 344 A 344
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)
Query: 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 385
+++ + G+ + + +M
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251
Query: 386 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 431
+ N V + + + +H Q
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309
Query: 432 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 481
++ + + + + + + + ++DA + S E P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)
Query: 589 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 647
D I + D + +++ ID G + +G L VI + RI I +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 648 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 702
+ A + R + + ++ + + K +S
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 703 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757
R S + + + K+ + Y + L
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213
Query: 758 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 807
+ A + P ++ S
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273
Query: 808 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 861
S G + +K + + + + +P +++ +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333
Query: 862 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 907
+ +++ ++ + + L +KRV ++ + S + V
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
Query: 908 DVDG---WGIQTCRSLQTPDG 925
D + L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 3e-04
Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)
Query: 835 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 893
P + N+ ++ D I + + S +++ ++ V S +
Sbjct: 16 KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74
Query: 894 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 951
L+ G DA+I + D+ ++ ++ + + +
Sbjct: 75 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131
Query: 952 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1009
AI + E L + +Q + + I + + +
Sbjct: 132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191
Query: 1010 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1041
L T+ +
Sbjct: 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.2 bits (92), Expect = 0.001
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 409 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468
+ + I + +A + K++ + T+ V D T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275
Query: 469 GSRTYSFEGHGAP 481
+ T + P
Sbjct: 276 NTITATMAVGKNP 288
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.9 bits (91), Expect = 0.001
Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)
Query: 589 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 646
A + I + D+ ++ TI G NP + +GT + V N + I++T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61
Query: 647 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706
A + + S V+ G ++ + + A
Sbjct: 62 ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115
Query: 707 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 766
+ PL S L + +S + + D T
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173
Query: 767 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 826
A + ++ +K +S+ T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233
Query: 827 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877
K I P P +A P V +T+ + + ++ + + +
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (88), Expect = 0.004
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)
Query: 448 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 505
KQ I + + I VW+ V + + + + + ++
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61
Query: 506 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 562
A+ A T ++ G+ +F + S + +
Sbjct: 62 LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121
Query: 563 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621
+GL H++ T L + + D + + PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1086 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.61 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.27 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.17 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.11 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.97 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.92 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.88 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.67 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.62 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.28 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.28 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.01 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.98 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.91 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.89 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.88 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.86 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.83 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.82 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.81 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.8 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.77 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.72 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.63 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.63 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.61 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.61 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.59 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.37 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.31 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.27 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.24 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.25 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 95.09 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.9 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.66 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 93.58 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.36 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.27 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.79 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.51 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.24 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 89.38 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.74 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.46 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-36 Score=334.48 Aligned_cols=293 Identities=13% Similarity=0.172 Sum_probs=252.0
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
+.+++| +|.+.|+|++|||+|++ ||+|+ ||.|+|||+.++..... .......+|.+.|.+++|
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence 444555 89999999999999985 89987 79999999988754421 111225689999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|||++||+|+.||+|++||+..... +....+..|...|.+++|+|++. ++++++.|+.|++||+.++++.....+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 99999999999999999999886543 22335778999999999999999 8999999999999999999999999999
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
...|.+++|++ ++..+++++.|+.|++||+++++....+. +...|.+++|+|+++++++++. ++.+++||+.+
T Consensus 183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred ccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----ccccccccccc
Confidence 99999999954 66799999999999999999887766554 5678999999999999999886 66799999998
Q ss_pred CeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001396 559 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 638 (1086)
Q Consensus 559 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 638 (1086)
++.. ....|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++++.||
T Consensus 256 ~~~~-~~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 256 PDKY-QLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SCEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred cccc-cccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCC
Confidence 8765 344455 89999999999999999999999999999999998887643 4589999999999999999999
Q ss_pred cEEEEEC
Q 001396 639 RIKILET 645 (1086)
Q Consensus 639 ~i~iw~~ 645 (1086)
+|++||+
T Consensus 329 ~I~vWdl 335 (337)
T d1gxra_ 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-36 Score=327.22 Aligned_cols=288 Identities=21% Similarity=0.359 Sum_probs=264.1
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
.++|.||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~ 69 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH 69 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeec
Confidence 467999999999999999998 599999999999999999988865 778999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
++.++++++.++.+.+|+....+... .+.+|...+.++.|+++++ .+++++.|+.+++||+.+++.+..+.+|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 144 (317)
T d1vyhc1 70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE 144 (317)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCC
Confidence 99999999999999999998876444 4678999999999999999 899999999999999999999999999999
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC--------------------CEEEE
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFS 540 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--------------------~~l~~ 540 (1086)
.+.++++++ ++.+|++++.|+.|++|++.+......+..+...+.+++++|++ ..+++
T Consensus 145 ~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 145 WVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred cceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 999999854 67899999999999999999999999999999999999998764 35666
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCc
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 620 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 620 (1086)
++. ++.|++||..+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++++..+..|. ..|.
T Consensus 223 ~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~ 293 (317)
T d1vyhc1 223 GSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVT 293 (317)
T ss_dssp EET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEE
T ss_pred ccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEE
Confidence 664 7789999999999999999988 899999999999999999999999999999999999998764 4699
Q ss_pred eEEEecCCCEEEEEECCCcEEEEE
Q 001396 621 RICFNKNGTLLAVIANENRIKILE 644 (1086)
Q Consensus 621 ~v~~s~~~~~l~~~~~dg~i~iw~ 644 (1086)
+++|+|++++|++++.||+|++||
T Consensus 294 ~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 294 SLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-35 Score=319.89 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=248.6
Q ss_pred cCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 326 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+++.+.+++++|+|+. ||.++ ++.|.+||+.++..... +.+|.+.|.+++|+|||++|
T Consensus 15 ~~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l 73 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC 73 (311)
T ss_dssp CCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred CCCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence 34456788999999996 66664 57799999999877654 77899999999999999999
Q ss_pred EEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC--CCcEEEEeCCCCceeEEeecCCcceE
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY 483 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~ 483 (1086)
|+|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. +..++||++++++....+.+|...|+
T Consensus 74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~ 150 (311)
T d1nr0a1 74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150 (311)
T ss_dssp EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998875432 25778999999999999999 6777764 56799999999999999999999999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 563 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 563 (1086)
+++|+++.+ ..|++|+.||.|++||+++.+.......+...|.+++|+|+++++++++. ++.|++||..++..+.
T Consensus 151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 225 (311)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence 999976422 35889999999999999999999999999999999999999999999886 6789999999998877
Q ss_pred EEeccc----ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc
Q 001396 564 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 639 (1086)
Q Consensus 564 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 639 (1086)
.+.... .|...|.+++|+|++++|++|+.||.|+|||+++++++..+..+... ....+.+.+++..+++++.||.
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 765432 23478999999999999999999999999999999999998766432 2344566666778999999999
Q ss_pred EEEEECC
Q 001396 640 IKILETP 646 (1086)
Q Consensus 640 i~iw~~~ 646 (1086)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-35 Score=321.93 Aligned_cols=305 Identities=19% Similarity=0.314 Sum_probs=261.4
Q ss_pred EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEE
Q 001396 430 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 509 (1086)
Q Consensus 430 ~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 509 (1086)
.+.||.++|++++|+|+++ +|+||+.||+|+|||+.+++.+.++.+|...|.++++++ ++.++++++.++.+.+|+
T Consensus 12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLWD 87 (317)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEEE
T ss_pred EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--cccccccccccccccccc
Confidence 6889999999999999999 899999999999999999999999999999999999954 678999999999999999
Q ss_pred cCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE
Q 001396 510 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 510 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
.........+..+...+.++.++++++.+++++. ++.+.+||+++++.+..+.+|. ..+.+++|+++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGYCVKTFTGHR---EWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCEEEEEECCS---SCEEEEEECTTSSEEEE
T ss_pred ccccccccccccccccceeeeccCCCceEEeecc----CcceeEeecccceeeeEEccCC---CcceeeecccCCCEEEE
Confidence 9999988888899999999999999999999886 7789999999999999999887 89999999999999999
Q ss_pred EECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccC
Q 001396 590 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 669 (1086)
Q Consensus 590 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~ 669 (1086)
++.|+.|++|+..+++....+..+.. .+.+++|+|++...
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~-------------------------------------- 200 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYS-------------------------------------- 200 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGG--------------------------------------
T ss_pred EeCCCeEEEEeeccceeeEEEecCCC--CceEEEEeeccccc--------------------------------------
Confidence 99999999999998887776654422 24444444322100
Q ss_pred CCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc
Q 001396 670 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 749 (1086)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 749 (1086)
...
T Consensus 201 --------------------------------------------------------------------------~~~--- 203 (317)
T d1vyhc1 201 --------------------------------------------------------------------------SIS--- 203 (317)
T ss_dssp --------------------------------------------------------------------------GGG---
T ss_pred --------------------------------------------------------------------------eee---
Confidence 000
Q ss_pred ceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCce
Q 001396 750 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 828 (1086)
Q Consensus 750 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~ 828 (1086)
............++.++++++ |+.|++||+.+++
T Consensus 204 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 238 (317)
T d1vyhc1 204 ---------------------------------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238 (317)
T ss_dssp ---------------------------------------------GCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred ---------------------------------------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence 000011122233556677776 7999999999999
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001396 829 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 908 (1086)
Q Consensus 829 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 908 (1086)
.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+|++++|++++.||+|+|||
T Consensus 239 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 239 CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-34 Score=315.68 Aligned_cols=250 Identities=14% Similarity=0.201 Sum_probs=218.3
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccce--EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+|...|.+++|||+|++||+|+ ||.|+|||+.++....... ...+|.+.|.+++|+||++ +|++|+.|++|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence 7999999999999999999997 7899999998776544332 3457999999999999999 899999999999999
Q ss_pred CCC--CceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 466 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 466 ~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+.. ++....+..|...+..+++++ ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 874 455677889999999999954 6789999999999999999999988888999999999999999999999886
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 623 (1086)
++.+++||+++++.+..+. +. ..|.+++|+|+++++++++.|+.+++||+.+++..... .+...|.+++
T Consensus 204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~ 272 (337)
T d1gxra_ 204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK 272 (337)
T ss_dssp ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence 7789999999999887765 33 78999999999999999999999999999988876443 2344689999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCCeeee
Q 001396 624 FNKNGTLLAVIANENRIKILETPESNSVDA 653 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 653 (1086)
|+|++++|++++.||.|++||..+++.+..
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~ 302 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 999999999999999999999988765543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-34 Score=322.72 Aligned_cols=303 Identities=15% Similarity=0.236 Sum_probs=241.2
Q ss_pred ccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCE
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 404 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 404 (1086)
.+|++.|+|++|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+|||++
T Consensus 59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCc
Confidence 37999999999999998 589987 899999999999887653211000 000111222235578899999999999999
Q ss_pred EEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEE
Q 001396 405 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 484 (1086)
Q Consensus 405 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 484 (1086)
|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++||..+.........+...+ .
T Consensus 136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~ 209 (388)
T d1erja_ 136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T 209 (388)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence 9999999999999999887555 5778999999999999999 79999999999999999998888777555544 4
Q ss_pred EeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe-------cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 485 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 485 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
+.+. ..++.+|++++.||.|++||..+......+ ..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 210 ~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~ 284 (388)
T d1erja_ 210 VAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ 284 (388)
T ss_dssp EEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred cccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence 4444 346789999999999999999988776544 345678999999999999999986 7789999998
Q ss_pred CCeee------------eEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEE--
Q 001396 558 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-- 623 (1086)
Q Consensus 558 ~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-- 623 (1086)
++... .....|. ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~ 359 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVA 359 (388)
T ss_dssp --------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred CCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEe
Confidence 76443 2233333 8899999999999999999999999999999999999987743 577776
Q ss_pred ----EecCCCEEEEEECCCcEEEEECC
Q 001396 624 ----FNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 624 ----~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
|+|++++|++|+.||+|++|+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 46789999999999999999975
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-33 Score=310.02 Aligned_cols=295 Identities=18% Similarity=0.259 Sum_probs=258.7
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
....++|.||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +.+|...|.+++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~ 104 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence 456789999999999999999998 599999999999999999988765 668999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccc-cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
|+|++.++++|+.|+.+++|+........ ....+.+|...........+. .+.....|.....|+..+........
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (340)
T d1tbga_ 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence 99999999999999999999987655432 233566788777776666554 57888889999999988888888888
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
.+...+....+.+ .+.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+
T Consensus 182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~ 255 (340)
T d1tbga_ 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence 8888888888744 5679999999999999999999999999999999999999999999999986 778999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
........+.... +...+.+++|+|++++|++|+.||.|++||+.+++++..+..|. ..|.+++|+|++++|++|+.
T Consensus 256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred ccccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEcc
Confidence 9988877765433 34679999999999999999999999999999999999998764 46999999999999999999
Q ss_pred CCcEEEEE
Q 001396 637 ENRIKILE 644 (1086)
Q Consensus 637 dg~i~iw~ 644 (1086)
||.|++||
T Consensus 333 Dg~v~iWd 340 (340)
T d1tbga_ 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.6e-34 Score=321.70 Aligned_cols=326 Identities=15% Similarity=0.165 Sum_probs=260.6
Q ss_pred EEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCc
Q 001396 345 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD 424 (1086)
Q Consensus 345 a~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~ 424 (1086)
..+..++...+|+....+..... + ....+|.+.|+|++|||||++||+|+ |++|+|||+.+++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-------------l--~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~ 95 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVE-------------L--HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 95 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEE-------------E--EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE
T ss_pred cccCCCCcEEEeCCCCCcceeee-------------e--EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce
Confidence 34556678889997665543321 0 11336999999999999999999986 88999999998876
Q ss_pred cccc---------------eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 425 ARQQ---------------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 425 ~~~~---------------~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
+... ....+|...|++++|+|+|+ +|++|+.||.|++||..+++.+..+.+|...|.++++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 173 (388)
T d1erja_ 96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173 (388)
T ss_dssp EEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc
Confidence 4321 11235777899999999999 899999999999999999999999999999999999954
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
++..+++++.++.+++||..+.........+...+....+.+++++|++++. ++.|++||..++.....+....
T Consensus 174 --~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~ 247 (388)
T d1erja_ 174 --SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSEN 247 (388)
T ss_dssp --TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC---
T ss_pred --ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeecccc
Confidence 6679999999999999999988887777766666655555668999999876 6679999999988877664321
Q ss_pred ----ccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc----------CCCCCCCCceEEEecCCCEEEEEE
Q 001396 570 ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----------AGGGLPENPRICFNKNGTLLAVIA 635 (1086)
Q Consensus 570 ----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~~~~l~~~~ 635 (1086)
.|...|.+++|+|++++|++++.||.|++||+.++....... ...+...|.+++|+|++++|++|+
T Consensus 248 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 327 (388)
T d1erja_ 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327 (388)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe
Confidence 234789999999999999999999999999998765432211 112234689999999999999999
Q ss_pred CCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeee
Q 001396 636 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 710 (1086)
Q Consensus 636 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~ 710 (1086)
.||.|++||+.+++.+..+.+|...|.++++.+.... +|++.++++++.|++|++|+++
T Consensus 328 ~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~----------------spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc----------------CCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999999999999988653222 6899999999999999999975
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-33 Score=304.78 Aligned_cols=294 Identities=13% Similarity=0.157 Sum_probs=231.8
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+.+++.||++.|++++|||||+ +||+|+.||+|++||+.+++.+.. ...+|...|.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~ 63 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT 63 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence 46789999999999999999998 589999999999999999987754 13479999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 478 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h 478 (1086)
+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +..... .
T Consensus 64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~--~ 135 (299)
T d1nr0a2 64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP--I 135 (299)
T ss_dssp CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--C
T ss_pred eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc--cccccc--c
Confidence 9999755 556789999999876543333323456788899999999998 555554 6789999843 232322 3
Q ss_pred CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE-EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 479 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 479 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
...+.+++++ +++.+|++++.||.|++||+++..... ....+...|.+++|+|+++++++++. ++.|++||+.
T Consensus 136 ~~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~ 209 (299)
T d1nr0a2 136 SYNSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA 209 (299)
T ss_dssp SSCEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence 4456778885 467899999999999999998776543 44567789999999999999999876 6679999998
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC-CCCCCceEEEecCCCEEEEEEC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
++...........|...|.+++|+|++++|++|+.||.|++||+.++.......... ....+.++ +++++++|++++.
T Consensus 210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ 288 (299)
T ss_dssp GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence 887665554444445899999999999999999999999999999876544333322 22334444 5566789999999
Q ss_pred CCcEEEEECC
Q 001396 637 ENRIKILETP 646 (1086)
Q Consensus 637 dg~i~iw~~~ 646 (1086)
|+.|++||+.
T Consensus 289 D~~i~iWdl~ 298 (299)
T d1nr0a2 289 DSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEECC
T ss_pred CCEEEEEecc
Confidence 9999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.6e-33 Score=307.32 Aligned_cols=347 Identities=14% Similarity=0.187 Sum_probs=267.9
Q ss_pred eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCc
Q 001396 516 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 595 (1086)
Q Consensus 516 ~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 595 (1086)
+.++.+|...|.. ++++++++|++|+. |+.|++||+.+++.+.++.+|. ..|.+++|+|+ .+|++++.|+.
T Consensus 5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~~ 75 (355)
T d1nexb2 5 RTTLRGHMTSVIT-CLQFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDRT 75 (355)
T ss_dssp EEEEECCSSSCEE-EEEEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTCC
T ss_pred cEEECCcCCCcEE-EEEECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEecccc
Confidence 4567788877532 34567899999986 7789999999999999999988 89999999986 58999999999
Q ss_pred EEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceec
Q 001396 596 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 675 (1086)
Q Consensus 596 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 675 (1086)
|++|+....+..................+++++.++++++.|+.|++|++.+..............
T Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-------------- 141 (355)
T d1nexb2 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-------------- 141 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC--------------
T ss_pred cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec--------------
Confidence 999999999988877766554445667788999999999999999999988664332211000000
Q ss_pred cccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCc-eEEEeeccceeEE
Q 001396 676 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM 754 (1086)
Q Consensus 676 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~v 754 (1086)
.....+... .++....
T Consensus 142 ---------------------------------------------------------~~~~~~~~~~~~~~~~~------ 158 (355)
T d1nexb2 142 ---------------------------------------------------------LVFHTPEENPYFVGVLR------ 158 (355)
T ss_dssp ---------------------------------------------------------EEESCTTTCTTEEEEEE------
T ss_pred ---------------------------------------------------------cceeccccccceeeeee------
Confidence 000000000 0000000
Q ss_pred eeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEE
Q 001396 755 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 833 (1086)
Q Consensus 755 w~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~ 833 (1086)
.|...+ ..+.+++.+++++. |+.+++||+.+++.+...
T Consensus 159 ---------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~ 197 (355)
T d1nexb2 159 ---------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197 (355)
T ss_dssp ---------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ---------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeee
Confidence 022233 34566788888887 799999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 001396 834 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 913 (1086)
Q Consensus 834 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 913 (1086)
.++...+.++.|+| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+ +++|++++.||.|++||+.+..
T Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 198 SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred eccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence 99999999999999 89999999999999999999999999999999999999996 4699999999999999998854
Q ss_pred eeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECC
Q 001396 914 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 993 (1086)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~D 993 (1086)
.. +..... ......++++++.+++++.|+.|++||+++|+++.....+|...|.+++|+|+ .++++++.|
T Consensus 275 ~~----~~~~~~-----~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d 344 (355)
T d1nexb2 275 RK----FSYHHT-----NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD 344 (355)
T ss_dssp EE----EEEECT-----TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred ee----cccccC-----CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence 22 111111 12334567899999999999999999999999988777889999999999987 478889999
Q ss_pred CcEEEEEcC
Q 001396 994 GTLSIHEAS 1002 (1086)
Q Consensus 994 g~v~vWd~~ 1002 (1086)
|+++||.++
T Consensus 345 g~~~l~~~d 353 (355)
T d1nexb2 345 GQSFLEILD 353 (355)
T ss_dssp SCEEEEEEE
T ss_pred CcEEEEEEe
Confidence 998777543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-32 Score=304.10 Aligned_cols=325 Identities=16% Similarity=0.180 Sum_probs=257.5
Q ss_pred eeeeeccCCCCc-eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 320 VAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 320 ~~~~l~~h~~~V-~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
...+|+||.+.| +|++ +||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|
T Consensus 4 ~~~tL~GH~~~vitc~~--~~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~ 61 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQ--FEDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY 61 (355)
T ss_dssp EEEEEECCSSSCEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred CcEEECCcCCCcEEEEE--ECCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EECCCCCEEEEEE
Confidence 356799999887 5554 5677 599999999999999999988875 7799999999999
Q ss_pred CCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe---
Q 001396 399 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 475 (1086)
Q Consensus 399 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~--- 475 (1086)
+|+ .+|++|+.|++|++|++...+..... ....+........+.++++ .+++++.|+.|++||+.++..+...
T Consensus 62 s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~ 137 (355)
T d1nexb2 62 AHG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 137 (355)
T ss_dssp ETT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC----------
T ss_pred cCC-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccc
Confidence 986 58999999999999999987654422 2223444566778888888 8999999999999999876543322
Q ss_pred --------------------ecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCC
Q 001396 476 --------------------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 535 (1086)
Q Consensus 476 --------------------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~ 535 (1086)
..|...+... ..++.+++++..|+.|++||+.+.+.......+...+.++.+++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (355)
T d1nexb2 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTV----SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 213 (355)
T ss_dssp -CCCEEESCTTTCTTEEEEEECCSSCEEEE----EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred ceeccceeccccccceeeeeeecccccccc----ccccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence 2233334333 2355799999999999999999999988888899999999999999
Q ss_pred CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCC
Q 001396 536 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 615 (1086)
Q Consensus 536 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 615 (1086)
.++++++. ++.|++||..++..+..+.+|. ..|.++++++ +++++++.||.|++||+.++.........
T Consensus 214 ~~~~~~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 282 (355)
T d1nexb2 214 KRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHT-- 282 (355)
T ss_dssp TEEEEEET----TSCEEEEETTTCCEEEEECCCS---SCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECT--
T ss_pred eeeecccc----cceEEeeecccccccccccccc---cccccccccc--ceeeeeecccccccccccccceecccccC--
Confidence 99999986 6779999999999999999888 8899998874 68999999999999999988765554322
Q ss_pred CCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeee-eccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 616 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVD-AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 616 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
......++++++.++++++ |+.|++||+++++.+. .+.+|...|.+++++ |+ ..
T Consensus 283 -~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~----------------------~~-~~ 337 (355)
T d1nexb2 283 -NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK----------------------GK-TL 337 (355)
T ss_dssp -TCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEE----------------------TT-EE
T ss_pred -CceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEc----------------------CC-eE
Confidence 1123345677887777665 8999999999998875 567888999999886 33 45
Q ss_pred ceeccccCccceeeee
Q 001396 695 EISVEAENKSEVEKPL 710 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~ 710 (1086)
+++++.||++.+|..+
T Consensus 338 ~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 338 VAAVEKDGQSFLEILD 353 (355)
T ss_dssp EEEEESSSCEEEEEEE
T ss_pred EEEEECCCcEEEEEEe
Confidence 7788899998777654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-32 Score=300.05 Aligned_cols=286 Identities=14% Similarity=0.183 Sum_probs=258.7
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.+++|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 88999999999999999999999999999999999987655 6789999999999999999 899999999999999
Q ss_pred CCCC----ceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEE
Q 001396 466 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 541 (1086)
Q Consensus 466 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 541 (1086)
.... .....+.+|........... +..+.....+.....+.................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7654 34566777887776665432 3478889999999999998888888888888899999999999999998
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCce
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 621 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 621 (1086)
.. ++.|++||+++++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+........+........+.+
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 76 7789999999999999999887 8999999999999999999999999999999999888876666667899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceecccc
Q 001396 622 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 701 (1086)
Q Consensus 622 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 701 (1086)
++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D 333 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence 9999999999999999999999999999999999999999999996 788999999999
Q ss_pred Cccceee
Q 001396 702 NKSEVEK 708 (1086)
Q Consensus 702 ~~i~vw~ 708 (1086)
|.|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.1e-33 Score=300.82 Aligned_cols=287 Identities=11% Similarity=0.111 Sum_probs=243.6
Q ss_pred cCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeC
Q 001396 387 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 466 (1086)
Q Consensus 387 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~ 466 (1086)
..+.+.+..++++|+|+.||.+. ++.|.+||+.+++..+ .+.+|.+.|++++|+|+|+ +|++|+.||+|++||+
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 87 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE---EEcCCCCCEEEEEEeCCCC--eEeccccCceEeeeee
Confidence 34556777899999999999986 5569999999876555 5789999999999999999 8999999999999999
Q ss_pred CCCcee--EEeecCCcceEEEeecccCCccEEEEEEc--CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCE-EEEE
Q 001396 467 VTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSC 541 (1086)
Q Consensus 467 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~-l~~~ 541 (1086)
.++... ..+.+|.++|.+++|++ ++.+|++++. +..+++|++++.+....+..|...|.+++|+|++++ ++++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg 165 (311)
T d1nr0a1 88 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165 (311)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred eccccccccccccccCccccccccc--cccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 988754 56788999999999955 6778988876 456999999999988888899999999999999986 5666
Q ss_pred eeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCC-----CCC
Q 001396 542 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGL 616 (1086)
Q Consensus 542 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~ 616 (1086)
+. ++.|++||.++++....+..|. ..|.++.|+|+++++++++.|+.|++||..++.....+... ++.
T Consensus 166 s~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~ 238 (311)
T d1nr0a1 166 SD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238 (311)
T ss_dssp ET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred cc----cccccccccccccccccccccc---ccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence 64 6789999999999999988887 89999999999999999999999999999999888877532 234
Q ss_pred CCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccc-eeeeEEccCCCceeccccCCeeeecCCCCCCcccc
Q 001396 617 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 695 (1086)
Q Consensus 617 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l 695 (1086)
..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+... ...+.+. +++..+
T Consensus 239 ~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~----------------------~~~~~l 296 (311)
T d1nr0a1 239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII----------------------WTKQAL 296 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE----------------------ECSSCE
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE----------------------ecCCEE
Confidence 56899999999999999999999999999999888877655432 1122222 346679
Q ss_pred eeccccCccceeeee
Q 001396 696 ISVEAENKSEVEKPL 710 (1086)
Q Consensus 696 ~s~~~d~~i~vw~~~ 710 (1086)
++++.||.|++||++
T Consensus 297 ~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 297 VSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTCCEEEEETT
T ss_pred EEEECCCEEEEEeCC
Confidence 999999999999963
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.2e-33 Score=309.52 Aligned_cols=289 Identities=12% Similarity=0.082 Sum_probs=232.7
Q ss_pred CCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEE
Q 001396 328 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 407 (1086)
Q Consensus 328 ~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 407 (1086)
.++|+|++|||||+ +||+|+.||.|+|||+.+++..... .+.+|.++|.+++|+|++++||+
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence 35899999999998 5899999999999999887644321 27799999999999999999999
Q ss_pred EeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCcee----EEeecCCcceE
Q 001396 408 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY 483 (1086)
Q Consensus 408 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 483 (1086)
|+.|++|+|||+.++.... ...+.+|...|.+++|+|+++ .+++++.|++|++|+++..... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 9999999999998875432 335678999999999999999 8999999999999998776543 34457889999
Q ss_pred EEeecccCCccEEEEEEcCCeEEEEEcCCCc------------------eeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 484 SLCPHAKENIHFIFSISVDGKIKAWLYDSLG------------------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 484 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+++|+| ++.+|++|+.|++|++|+..... .......+...+.+++|+|+|++|++++.
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 999955 77899999999999999975432 33455667778999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcC-------------
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA------------- 612 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~------------- 612 (1086)
++.|++||+.++..+..+..|. .+|.+++|+|+++++++ +.|+.+++|..........+..
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~---~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred --CCcceEEeeecccceeeeeccc---ccceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence 7789999999999999999887 89999999999876665 5577777765433211111100
Q ss_pred --------------------------CCCCCCCceEEEecCC----CEEEEEECCCcEEEEECCC
Q 001396 613 --------------------------GGGLPENPRICFNKNG----TLLAVIANENRIKILETPE 647 (1086)
Q Consensus 613 --------------------------~~~~~~v~~v~~s~~~----~~l~~~~~dg~i~iw~~~~ 647 (1086)
..+...|.++++.+.+ ..+++++.||.|++||+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 0123457788887754 4689999999999999864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-31 Score=291.58 Aligned_cols=331 Identities=16% Similarity=0.225 Sum_probs=262.7
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.++.++|+||++.|.+ +++++|++ ||||+.||+|+|||+.+++++.. +.+|...|.+++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~~-l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~ 64 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQ 64 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEE
T ss_pred CCcCEEECCcCCceEE-EEEECCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEE
Confidence 3566789999999976 47778985 89999999999999999998865 779999999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
|+|+ +|++|+.|+++++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+..
T Consensus 65 ~~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~ 135 (342)
T d2ovrb2 65 MRDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMG 135 (342)
T ss_dssp EETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred eCCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeec
Confidence 9875 99999999999999998765433 3445555666655544 3 577889999999999999998888766
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
+......... ....+++++.|+.|++||.........+..+...+. .+++++.++++++. ++.|++||++
T Consensus 136 ~~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~----dg~i~~~d~~ 205 (342)
T d2ovrb2 136 HVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSL----DTSIRVWDVE 205 (342)
T ss_dssp CSSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEET----TSCEEEEETT
T ss_pred ccccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeC----CCeEEEeecc
Confidence 6555444332 345799999999999999999888888887766554 45568899999986 6789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 637 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 637 (1086)
.++.+..+.+|. ..+.++.+++ +++++++.||.|++||+...+....+..+.. ......++.++++++++++.|
T Consensus 206 ~~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~D 279 (342)
T d2ovrb2 206 TGNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDD 279 (342)
T ss_dssp TCCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETT
T ss_pred cceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCC
Confidence 999999999887 7888877764 6999999999999999999988888765432 123344555567899999999
Q ss_pred CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccc
Q 001396 638 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 717 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~ 717 (1086)
|.|++||+.+++.+..+....
T Consensus 280 g~i~iwd~~tg~~i~~~~~~~----------------------------------------------------------- 300 (342)
T d2ovrb2 280 GTVKLWDLKTGEFIRNLVTLE----------------------------------------------------------- 300 (342)
T ss_dssp SEEEEEETTTCCEEEEEEECT-----------------------------------------------------------
T ss_pred CEEEEEECCCCCEEEEEeccc-----------------------------------------------------------
Confidence 999999999887765543110
Q ss_pred cccccCCcccccceEEEEEecCCceEEEeeccce----eEEeeccC
Q 001396 718 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 759 (1086)
Q Consensus 718 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~vw~~~~ 759 (1086)
..+|...|.+++|+|++..+++++.||+ +++||++.
T Consensus 301 ------~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 301 ------SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ------TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ------CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 0125667888999999988888888875 78888753
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-32 Score=305.62 Aligned_cols=244 Identities=13% Similarity=0.121 Sum_probs=204.3
Q ss_pred CccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCC
Q 001396 390 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 469 (1086)
Q Consensus 390 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~ 469 (1086)
.++|+|++|||||++||+|+.|+.|+|||+.+++. .....+.+|.++|.+++|+|+++ +|++|+.|++|+|||+.++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 37899999999999999999999999999988753 23446889999999999999999 8999999999999999877
Q ss_pred cee--EEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee----EEecCCCCceEEEEEecCCCEEEEEee
Q 001396 470 SRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 470 ~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
... ..+.+|...|.+++|+| +++.|++++.|++|++|+++..... .....+...|.+++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccc--ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 644 45578899999999955 6789999999999999998876543 234567789999999999999999986
Q ss_pred CCCCceeEEEEeCCCCe------------------eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCe
Q 001396 544 SKEGESFLVEWNESEGA------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 605 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 605 (1086)
++.|++||..... .+....+|. ..|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 162 ----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 162 ----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234 (371)
T ss_dssp ----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred ----CcEEEEEeeccCccccccccccccccccceeeeeeccCcc---CcEEEEEeecccccccccccCCcceEEeeeccc
Confidence 6789999976532 233334444 889999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCC
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.+..+..+. .+|.+++|+|+++++++| .|+.+.+|.....
T Consensus 235 ~~~~~~~~~--~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 235 AVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSA 274 (371)
T ss_dssp EEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred ceeeeeccc--ccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence 999888664 468999999999877765 4677777665543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-31 Score=289.93 Aligned_cols=320 Identities=20% Similarity=0.288 Sum_probs=250.7
Q ss_pred cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEE
Q 001396 427 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 506 (1086)
Q Consensus 427 ~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 506 (1086)
....++||.+.|.+ +++++|+ +|+||+.||+|+|||+.++++++++.+|.+.|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 34478899999865 4667888 899999999999999999999999999999999999954 3899999999999
Q ss_pred EEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE
Q 001396 507 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 586 (1086)
Q Consensus 507 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 586 (1086)
+|+................+...... ...+..+.. ++.+.+|+..+++....+.... . ....+.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~ 149 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---A--AVRCVQYDGRR 149 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---S--CEEEEEECSSC
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---c--cceeeccccce
Confidence 99998887777776666666555443 345555554 6789999999998877776544 2 23344556678
Q ss_pred EEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEE
Q 001396 587 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 587 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 666 (1086)
+++++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..++.+....+
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---------- 215 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---------- 215 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC----------
T ss_pred eeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc----------
Confidence 9999999999999999999888887653 35566777889999999999999999876543322211
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEe
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 746 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 746 (1086)
T Consensus 216 -------------------------------------------------------------------------------- 215 (342)
T d2ovrb2 216 -------------------------------------------------------------------------------- 215 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEcc
Q 001396 747 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM 825 (1086)
Q Consensus 747 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~ 825 (1086)
|...+.+++++ ++++++++ |+.|++||+.
T Consensus 216 ------------------------------------------------~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 216 ------------------------------------------------HQSLTSGMELK--DNILVSGNADSTVKIWDIK 245 (342)
T ss_dssp ------------------------------------------------CCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred ------------------------------------------------cccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence 33344444443 34667666 6778888887
Q ss_pred CceEEEEEcC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec-----cccCCeEEEEEeCCCCEEEE
Q 001396 826 TFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVS 897 (1086)
Q Consensus 826 ~~~~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~v~~l~~spdg~~l~s 897 (1086)
..+....+.. |...+.++.+++ +++++|+.||+|++||+.+++++..+. +|.+.|++++|+|++.+|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 246 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred cccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence 7777776654 445667776654 599999999999999999999888764 58889999999999999999
Q ss_pred EeCCCc----EEEEECCC
Q 001396 898 SGGDAQ----IFVWDVDG 911 (1086)
Q Consensus 898 ~s~dg~----i~iwd~~~ 911 (1086)
|+.||+ |++||++.
T Consensus 323 g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECSSSSSCCEEEEEECCC
T ss_pred EeCCCCCeeEEEEEeCCC
Confidence 999986 99999875
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.9e-31 Score=283.04 Aligned_cols=293 Identities=12% Similarity=0.099 Sum_probs=226.3
Q ss_pred CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeee
Q 001396 604 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 683 (1086)
Q Consensus 604 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 683 (1086)
|+..+.+.+| ...|.+++|+|++++|++|+.||+|++||+.+++....+.
T Consensus 2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------------------------- 51 (299)
T ss_dssp TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----------------------------
T ss_pred CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------------------
Confidence 5667777766 4579999999999999999999999999998876554332
Q ss_pred ecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccc
Q 001396 684 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 763 (1086)
Q Consensus 684 ~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 763 (1086)
..|...|.+++|+|+++ +++++.|+.+++|+.......
T Consensus 52 -----------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 52 -----------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp -----------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred -----------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccc
Confidence 12566788899999986 666777889999986543210
Q ss_pred cCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEE
Q 001396 764 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 843 (1086)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 843 (1086)
. .. ... ..+...+.++++++++++++++.++.+.+|+... ..... ....+.++
T Consensus 90 ~-----------------~~-~~~-----~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~ 142 (299)
T d1nr0a2 90 S-----------------SK-AVA-----NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCV 142 (299)
T ss_dssp T-----------------TS-CCE-----EECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEE
T ss_pred c-----------------cc-ccc-----cccccccccccccccccccccccccccccccccc--ccccc--cccccccc
Confidence 0 00 000 0256678899999999999999999999999643 32222 34568899
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeec
Q 001396 844 AFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 922 (1086)
Q Consensus 844 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 922 (1086)
+|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++.... ....
T Consensus 143 ~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~ 219 (299)
T d1nr0a2 143 ALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNS 219 (299)
T ss_dssp EECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCC
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 9999 89999999999999999999877543 345699999999999999999999999999999998754322 2333
Q ss_pred cCCCccCCCCceEEEEecCCCEEEE-EeCCeEEEEEcCCccceecc-ccCC-ccCEEEEEEeCCCCEEEEEECCCcEEEE
Q 001396 923 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIH 999 (1086)
Q Consensus 923 ~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~s~~~Dg~v~vW 999 (1086)
..+|.. .|.+++|+|++++|++ +.|+.|++||+.++...... ...| ...+..+ +++++++|++++.||+|++|
T Consensus 220 ~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 220 WTFHTA---KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFW 295 (299)
T ss_dssp CCCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEE
T ss_pred cccccc---ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEE
Confidence 444443 7999999999999999 57899999999987654322 2233 5566666 55677899999999999999
Q ss_pred EcC
Q 001396 1000 EAS 1002 (1086)
Q Consensus 1000 d~~ 1002 (1086)
|++
T Consensus 296 dl~ 298 (299)
T d1nr0a2 296 NVP 298 (299)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-31 Score=286.01 Aligned_cols=290 Identities=12% Similarity=0.172 Sum_probs=227.2
Q ss_pred CceEeeecCCCceEEEEEecc-CcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCC-CccEEEEEECC--CCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~~l 405 (1086)
.+++++|+|+|+. ||.++.+ ..|+.||......... ..+.+| ...|++++|+| +|++|
T Consensus 19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 5689999999996 6666543 3456666544332211 115566 56899999998 67899
Q ss_pred EEEeCCCEEEEEEecCCCccccc-----eEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 406 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 406 as~~~d~~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
|+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|+.++++++..+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 99999999999999877654322 1345688899999999999953333445678899999999999999999999
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec---CCCCceEEEEEecC-CCEEEEEeeCCCCceeEEEEeC
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
.|.+++|++.. ..++++++.|+.+++||....+...... .+...|.+++|+|+ +.++++++. ++.|++||+
T Consensus 161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~ 235 (325)
T d1pgua1 161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG 235 (325)
T ss_dssp CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred ccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence 99999997643 2467889999999999998877665543 45567999999997 678888876 677999999
Q ss_pred CCCeeeeEEecccccCCceEEEEEe---cCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecC-CCEEE
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA 632 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~ 632 (1086)
++++.+..+.+|. ..+..+.|+ |++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.+|+
T Consensus 236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence 9999999999877 555444444 6889999999999999999999999999887766544555555543 34889
Q ss_pred EEECCCcEEEEEC
Q 001396 633 VIANENRIKILET 645 (1086)
Q Consensus 633 ~~~~dg~i~iw~~ 645 (1086)
+++.||.|++||+
T Consensus 313 s~s~dg~i~vwdl 325 (325)
T d1pgua1 313 SLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTSCEEEEET
T ss_pred EEECCCEEEEEEC
Confidence 9999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.8e-29 Score=271.84 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=218.2
Q ss_pred ceEEEEEecCCceEEEeeccc-eeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCC-CCCeeEEEeec-
Q 001396 730 KISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK- 806 (1086)
Q Consensus 730 ~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~v~~l~~s~- 806 (1086)
.+.+++|+|++..++.++.+. .++.|+...... ..... +. +| ...|++++|+|
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~~~--~~--gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPVVQ--FT--GHGSSVVTTVKFSPI 74 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSEEE--EC--TTTTSCEEEEEECSS
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cceEE--Ee--CCCCCCEEEEEEeeC
Confidence 456789999999998876553 345554322110 11111 11 24 56799999998
Q ss_pred -CCCEEEEEe-CCeEEEEEccCce--------EEEEEcCCCCCeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeEE
Q 001396 807 -NDAYLFSAS-GGVISLYIVMTFK--------TILTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVIS 874 (1086)
Q Consensus 807 -dg~~l~~~~-dg~i~iwd~~~~~--------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~ 874 (1086)
++++|++++ ||+|+|||+..++ ....+..|.++|.+++|++ ++++|++++. ++.+++|+..+++.+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 7999999986432 2234567889999999999 8888887764 6689999999999999
Q ss_pred EeccccCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC-CCEEEE-EeCC
Q 001396 875 KLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHET 951 (1086)
Q Consensus 875 ~l~~h~~~v~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~ 951 (1086)
.+.+|...|.+++|+|++.+ +++++.|+.|++||+...+... ......++. ..|.+++|+|| +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 6789999999999998754322 233333333 47999999997 577777 6899
Q ss_pred eEEEEEcCCccceeccccCCccCEEEEEEe---CCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccce
Q 001396 952 HLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1028 (1086)
Q Consensus 952 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1086)
.|++||+.+++.+.. +.+|...+..+.|+ +||++|++++.|++|+|||+.+++.+..+.... +......+
T Consensus 229 ~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~ 301 (325)
T d1pgua1 229 KISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQV 301 (325)
T ss_dssp CEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCEE
T ss_pred ceeeeeecccccccc-ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeEE
Confidence 999999999998887 45787777777776 789999999999999999999999987776221 11223334
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEcc
Q 001396 1029 AIAAHPLKPTQFAVGLTNGEVYVIEP 1054 (1086)
Q Consensus 1029 ~~~~~p~~~~~l~~~~~dg~v~vw~~ 1054 (1086)
++.+.+ ...|++|+.||.|++||+
T Consensus 302 ~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 302 GVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEECC--CCEEEEEECCCEEEEEEC
Confidence 555554 468999999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.4e-27 Score=253.68 Aligned_cols=270 Identities=11% Similarity=0.131 Sum_probs=215.1
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+++++|+||.++|++++|+| |++|+.||+|++||+.++ ..+|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEE
Confidence 357889999999999999987 799999999999998764 336899999999
Q ss_pred ECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec
Q 001396 398 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 477 (1086)
Q Consensus 398 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~ 477 (1086)
|++++ .+++++.|+++++|++...+ +...+..+++++++. .+++ +.++.+.+|+..+++.+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEEC
T ss_pred ecCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeeccc
Confidence 99765 57889999999999986532 233577889999887 4554 4577899999999999888864
Q ss_pred CCcceEEEeecccCCccEEEEEEcC-CeEEEEEcCCCceeEEec-CCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
+ ..+.++.. ++..+++++.+ +.+++|++.......... .+...+++++|+|++.+|++++. ++.|++||
T Consensus 120 ~-~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 N-SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp S-SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred c-ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence 3 44544433 34567777766 479999988766655544 35668999999999999999986 66799999
Q ss_pred CCCCeeeeE-EecccccCCceEEEEEecC----------CCEEEEEECCCcEEEEEcCC-CeeEEEEcCCCCCCCCceEE
Q 001396 556 ESEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRIC 623 (1086)
Q Consensus 556 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~ 623 (1086)
..++..... +.+|. ..|.+++|+|. +.++++|+.|++|++||+++ ++.+..+..| ...|.+++
T Consensus 191 ~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~ 265 (287)
T d1pgua2 191 LQSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLL 265 (287)
T ss_dssp TTTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEE
T ss_pred ecccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEE
Confidence 998876543 45555 88999999874 46899999999999999977 4556655555 45699999
Q ss_pred EecCCCEEEEEECCCcEEEEEC
Q 001396 624 FNKNGTLLAVIANENRIKILET 645 (1086)
Q Consensus 624 ~s~~~~~l~~~~~dg~i~iw~~ 645 (1086)
|+|++ .+++++.|+.|++|++
T Consensus 266 ~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 266 WETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCC-EEEEEECCCeEEEEEE
Confidence 99986 6889999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=2.2e-27 Score=268.02 Aligned_cols=373 Identities=11% Similarity=0.044 Sum_probs=263.4
Q ss_pred ecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEE
Q 001396 336 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 415 (1086)
Q Consensus 336 ~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 415 (1086)
.+++. .++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|++|+
T Consensus 28 ~~~~~-~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~ 86 (432)
T d1qksa2 28 WDLEN-LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVN 86 (432)
T ss_dssp CCGGG-EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEE
T ss_pred CCCCc-EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEE
Confidence 34443 4578999999999999999999876 4344 4699999999999999999999999
Q ss_pred EEEecCCCccc--cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCc
Q 001396 416 LYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 493 (1086)
Q Consensus 416 iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 493 (1086)
+||+.+++... .+....+|.+.+.+.+|+|||++ ++++++.+++|++||.++++++..+..|...+..+.+.+.+
T Consensus 87 ~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-- 163 (432)
T d1qksa2 87 MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-- 163 (432)
T ss_dssp EEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--
T ss_pred EEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--
Confidence 99999876432 22233467778888899999995 45788899999999999999999998877665554443322
Q ss_pred cEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCC
Q 001396 494 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 573 (1086)
Q Consensus 494 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 573 (1086)
....+.++|+|..++.... .++.|.+||..+++......... ..
T Consensus 164 -------------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~ 207 (432)
T d1qksa2 164 -------------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ER 207 (432)
T ss_dssp -------------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CS
T ss_pred -------------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cC
Confidence 3345678899988766543 26689999998877554443322 25
Q ss_pred ceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCC---CCCCceEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 001396 574 SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPES 648 (1086)
Q Consensus 574 ~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~ 648 (1086)
.+..++|+|+|+++++++ .++.+.++|..+++....+..... ........+...+...++.. .++.+.+|.....
T Consensus 208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence 688999999999988876 456799999999998887754321 11122223333333333322 2455666654322
Q ss_pred CeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccc
Q 001396 649 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA 728 (1086)
Q Consensus 649 ~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 728 (1086)
.. ..+.
T Consensus 288 ~~--------------------------------------------------------------------------~~~~ 293 (432)
T d1qksa2 288 GH--------------------------------------------------------------------------PDNA 293 (432)
T ss_dssp TC--------------------------------------------------------------------------TTTB
T ss_pred cc--------------------------------------------------------------------------cccc
Confidence 10 0144
Q ss_pred cceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCC
Q 001396 729 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 808 (1086)
Q Consensus 729 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg 808 (1086)
..+....+++++..+++++.++..++|...... .+......+++ ||+
T Consensus 294 ~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg 340 (432)
T d1qksa2 294 WKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDI 340 (432)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEG
T ss_pred cEEEEEEEcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eec
Confidence 456777888888888888888777777532110 12222334555 899
Q ss_pred CEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEe-----CCCeEEEEEcCCceeEEEeccc
Q 001396 809 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH 879 (1086)
Q Consensus 809 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h 879 (1086)
+.+++++ |+.+++|++.++.. +..|...+.+++||| ||++++++. .+|.|+|||..|+++...+.+.
T Consensus 341 ~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 341 KAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp GGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred hhhcccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 9999887 68899999866532 335667889999999 888775543 4689999999999998888754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.5e-26 Score=245.97 Aligned_cols=274 Identities=20% Similarity=0.285 Sum_probs=220.8
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
++...+|...|+|++| ||+ +||+|+.||+|+|||+.+++++.. +.+|.+.|.+++|
T Consensus 8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~-- 63 (293)
T d1p22a2 8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY-- 63 (293)
T ss_dssp EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence 4456788889998765 787 599999999999999999998875 7899999999887
Q ss_pred CCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce---eEEeec
Q 001396 401 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG 477 (1086)
Q Consensus 401 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~---~~~~~~ 477 (1086)
++++|++|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+||..+... ...+..
T Consensus 64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (293)
T d1p22a2 64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG 136 (293)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred ccceeecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccc
Confidence 67899999999999999999886543 2222322 2334445555 689999999999999887654 345567
Q ss_pred CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCC
Q 001396 478 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 557 (1086)
Q Consensus 478 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 557 (1086)
|...+..+.+. ...+++++.|+.|++||..+.+....+..+...+..+.++ +..+++++. ++.|++||++
T Consensus 137 ~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~ 206 (293)
T d1p22a2 137 HRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE 206 (293)
T ss_dssp CSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred cccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence 88888877763 2478999999999999999999988888888888777664 568888876 6789999999
Q ss_pred CCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCC---------CeeEEEEcCCCCCCCCceEEEecCC
Q 001396 558 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG 628 (1086)
Q Consensus 558 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~ 628 (1086)
++..+..+.++. ..+.. +.+++.+|++++.||.|++||+.. ...+..+..|. ..|.+++|+ +
T Consensus 207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~ 277 (293)
T d1p22a2 207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--E 277 (293)
T ss_dssp TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--S
T ss_pred cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--C
Confidence 999999888876 56654 567788999999999999999753 34566676654 468899884 6
Q ss_pred CEEEEEECCCcEEEEE
Q 001396 629 TLLAVIANENRIKILE 644 (1086)
Q Consensus 629 ~~l~~~~~dg~i~iw~ 644 (1086)
++|++++.||+|++||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEecCCEEEEeC
Confidence 7899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-27 Score=262.78 Aligned_cols=297 Identities=9% Similarity=0.012 Sum_probs=217.5
Q ss_pred ceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 319 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 319 ~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
++++.+++|++.|++|+|||+|+ +||+|+.||+|+|||+.++....... ...+|..+|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEE
Confidence 35678899999999999999998 59999999999999998776543211 13369999999999
Q ss_pred CCC-CCEEEEEeCCCEEEEEEecCCCccccceEeccc-cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe-
Q 001396 399 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 475 (1086)
Q Consensus 399 spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~- 475 (1086)
+|+ +.+|++|+.|+.|++|++..+..... ...+ ........+.+++. .+++++.|+++++||++++......
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQA---LTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEEE---CBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred eCCCCCEEEEcccccceeeeeccccccccc---ccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence 986 45899999999999999998765442 2333 33444555666666 7999999999999998765443322
Q ss_pred ---ecCCcc--eEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeE---EecCCCCceEEEEE-ecCCCEEEEEeeCCC
Q 001396 476 ---EGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAY-SANGRRLFSCGTSKE 546 (1086)
Q Consensus 476 ---~~h~~~--v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~-s~d~~~l~~~~~~~~ 546 (1086)
..+... .....+ ..++..+++++.|+.|++||+....... ........+.+..+ ..++..+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 214 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--- 214 (342)
T ss_dssp EESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred cccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence 222222 222333 3355689999999999999998765432 23333444555554 456777777775
Q ss_pred CceeEEEEeCCCCeeee------E------EecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCC
Q 001396 547 GESFLVEWNESEGAIKR------T------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
++.+.+|+........ . ...+..+...+++++|+|++++|++|+.||.|++||+.+++.+..+....
T Consensus 215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 6778999876432211 1 11122334678999999999999999999999999999999998876432
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
.+..++|+|+++++++++.|..+++|...
T Consensus 294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 294 ---EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 35678999999999999999888877543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4e-26 Score=256.06 Aligned_cols=270 Identities=11% Similarity=0.105 Sum_probs=201.6
Q ss_pred eecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccc---cceEeccccccEeEEE------ecCCCCcEEEEEE
Q 001396 385 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLA------FSAPCKQISVITC 455 (1086)
Q Consensus 385 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~v~------~s~d~~~l~l~s~ 455 (1086)
...+|...|.++++++ ++|++++.|++|+|||..+.+... .......|...+..+. .+.... .+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence 4779999999999874 699999999999999987654321 1112223444333222 222221 267899
Q ss_pred eCCCcEEEEeCCCCceeEEe----------ecCCcceEEEeecccCC---ccEEEEEEcCCeEEEEEcCCCce-------
Q 001396 456 GDDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLGA------- 515 (1086)
Q Consensus 456 ~~d~~i~iwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~------- 515 (1086)
+.||.|++|++..+.....+ ..+...+..+++.+..+ +.++++++.||++++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 99999999997654432211 12445566777765432 57899999999999999853211
Q ss_pred -----------eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc---ccCCceEEEEEe
Q 001396 516 -----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFD 581 (1086)
Q Consensus 516 -----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~ 581 (1086)
......+...+.+++|+|++ ++++++. |+.|++||+.+++.+..+.... .|...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 01112334468899999998 7788775 7889999999998877665432 244899999999
Q ss_pred cCCCEEEEEECCCc---EEEEEcCCCeeEEEEcCC-----------CCCCCCceEEEecCCCEEEEEECCCcEEEEECCC
Q 001396 582 TAKDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPE 647 (1086)
Q Consensus 582 ~~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 647 (1086)
|++++|++|+.|++ |++||+++++.+..+... +|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999998875 899999999988887521 3455799999999999999999999999999999
Q ss_pred CCeeeecccccccee
Q 001396 648 SNSVDAAGVLSDNLR 662 (1086)
Q Consensus 648 ~~~~~~~~~~~~~v~ 662 (1086)
++++..+.+|.+.|.
T Consensus 321 g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 321 KERITTLNMHCDDIE 335 (393)
T ss_dssp TEEEEEEECCGGGCS
T ss_pred CCEEEEECCcCCccc
Confidence 999999999998875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=2.8e-26 Score=260.06 Aligned_cols=366 Identities=9% Similarity=0.011 Sum_probs=246.5
Q ss_pred EeeecCCCce-EEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 333 SMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 333 ~~~~spdg~~-lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
...+++|.+. ++++++.||+|+|||+.+++.+.. +..| ..+..++|||||++|++++.|
T Consensus 23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d 82 (426)
T d1hzua2 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRD 82 (426)
T ss_dssp SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETT
T ss_pred cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCC
Confidence 3446666543 457788899999999999998876 4445 468999999999999999999
Q ss_pred CEEEEEEecCCCccc--cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 412 HIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
++|++||+.+++... ......+|.+.+.+++|+|||++ +++++..++++++||..++.++..+.+|...+..+.+.+
T Consensus 83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (426)
T d1hzua2 83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161 (426)
T ss_dssp SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence 999999999987533 12223467788889999999995 456677899999999999999999988887777666644
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeee-EEecc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGL 568 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~ 568 (1086)
.+. ... +.+++++..++.... +.+.+.+++...+.... ....+
T Consensus 162 ~~~-~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 162 EPR-VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp CCC-EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEEC
T ss_pred CCc-eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEecc
Confidence 322 122 334444444444332 13345555555443322 22233
Q ss_pred cccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EE--EECCCcEEEEE
Q 001396 569 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AV--IANENRIKILE 644 (1086)
Q Consensus 569 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~--~~~dg~i~iw~ 644 (1086)
. ..+..+.|+|++++++++. .+..+.+++..+++..................+...+... .. .+.++.+.+|+
T Consensus 206 ~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~ 282 (426)
T d1hzua2 206 A---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282 (426)
T ss_dssp C---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred C---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence 3 6789999999999988876 5667899999999988887655433333333333322211 11 11233333332
Q ss_pred CCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCC
Q 001396 645 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 724 (1086)
Q Consensus 645 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~ 724 (1086)
....
T Consensus 283 ~~~~---------------------------------------------------------------------------- 286 (426)
T d1hzua2 283 TDPK---------------------------------------------------------------------------- 286 (426)
T ss_dssp CCTT----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2211
Q ss_pred cccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEe
Q 001396 725 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 804 (1086)
Q Consensus 725 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 804 (1086)
.+. ...+...... . +|...+..++|
T Consensus 287 --------------------------~~~-------------------------~~~~~~~~~l--~--g~~~~v~~v~~ 311 (426)
T d1hzua2 287 --------------------------NHP-------------------------QYAWKKVAEL--Q--GQGGGSLFIKT 311 (426)
T ss_dssp --------------------------TCT-------------------------TTBTSEEEEE--E--CSSSCCCCEEC
T ss_pred --------------------------ccc-------------------------cccceEeEEE--e--cCCCceeEEEc
Confidence 000 0001111111 1 26777888999
Q ss_pred ecCCCEEEEE-------e-CCeEEEEEccCceEEEEE---------cCCCCCeEEEEEcCCCCCEEE-EE----eCCCeE
Q 001396 805 SKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIA-IG----MDDSTI 862 (1086)
Q Consensus 805 s~dg~~l~~~-------~-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~la-sg----~~dg~v 862 (1086)
+||++++++. + +++|+|||+.+++...++ ..+...+.+++||| ||++++ ++ +.+|.|
T Consensus 312 sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i 390 (426)
T d1hzua2 312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSAL 390 (426)
T ss_dssp CTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEE
T ss_pred CCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeE
Confidence 9999999853 2 578999999988765543 24566799999999 787664 33 357899
Q ss_pred EEEEcCCceeEEEeccccCCeEEEEEeCCCCEEE
Q 001396 863 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 896 (1086)
Q Consensus 863 ~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 896 (1086)
+|||..|++....+.++. .++|+|++-+
T Consensus 391 ~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 391 VVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred EEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 999999999999998775 3467777643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-26 Score=245.29 Aligned_cols=271 Identities=11% Similarity=0.092 Sum_probs=217.9
Q ss_pred CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCccc
Q 001396 648 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 727 (1086)
Q Consensus 648 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 727 (1086)
.++++.+++|...|++++++ | |++|+.||+|++|+..... ..|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s----------------------~----l~sgs~Dg~v~~Wd~~~~~-----------~~h 45 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVN----------------------P----LISGSYDGRIMEWSSSSMH-----------QDH 45 (287)
T ss_dssp EEEEEEECCCSSCEEEEETT----------------------T----TEEEETTSCEEETTTTEEE-----------CCC
T ss_pred cceeEEECCCCCceEEEEEC----------------------c----EEEEeCCCeEEEEECCCCC-----------CCC
Confidence 35678899999999999886 2 8999999999999976432 248
Q ss_pred ccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecC
Q 001396 728 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 807 (1086)
Q Consensus 728 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~d 807 (1086)
...|.++.+++++ .+++++.|+++++|++.... ....+.+++++++
T Consensus 46 ~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~ 91 (287)
T d1pgua2 46 SNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANND 91 (287)
T ss_dssp CSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSS
T ss_pred CCCEEEEEecCCC-eEEEEeeccccccccccccc---------------------------------cccceeeeeeccC
Confidence 8899999998765 47889999999999864321 3345778899999
Q ss_pred CCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeEEEec-cccCCeEE
Q 001396 808 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTG 885 (1086)
Q Consensus 808 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~-~h~~~v~~ 885 (1086)
+..++++.++.+.+|+..+++.+..+..+ ..+ .++++ ++..+++++.++ .|++|++...+....+. .|.+.|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~ 167 (287)
T d1pgua2 92 GFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167 (287)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred CceEEEeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence 99999988899999999999988887643 333 45667 666777777765 79999998776665554 48889999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC----------CEEEE-EeCCeEE
Q 001396 886 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----------TRFLL-VHETHLA 954 (1086)
Q Consensus 886 l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----------~~l~~-~~d~~i~ 954 (1086)
++|+|++++|++++.||.|++||+.++.... ....+|.. .|.+++|+|++ .++++ +.|+.|+
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~ 240 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSREVKT----SRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE----CCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred EEeccCccccccccccccccceeeccccccc----cccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence 9999999999999999999999998865322 23344443 79999998754 57887 6889999
Q ss_pred EEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEc
Q 001396 955 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1001 (1086)
Q Consensus 955 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~ 1001 (1086)
+||+.++........+|...|++++|+|++ .|++++.||+|++|++
T Consensus 241 iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 999987555445577899999999999987 6889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.5e-26 Score=255.69 Aligned_cols=294 Identities=12% Similarity=0.077 Sum_probs=212.5
Q ss_pred eeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEE----
Q 001396 321 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV---- 396 (1086)
Q Consensus 321 ~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l---- 396 (1086)
....++|.+.|.++++++ ++ +++|+.|++|+|||..+......... ......|...+..+
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~-l~S~S~D~~iriWd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 70 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SF-TVSCSGDGYLKVWDNKLLDNENPKDK-------------SYSHFVHKSGLHHVDVLQ 70 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SE-EEEEETTSEEEEEESBCCTTCCGGGG-------------EEEEECCTTCEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--CE-EEEEECCCeEEEEECCCCCCCcccce-------------eEeeeeccCCceEeeeEe
Confidence 355689999999999876 44 88999999999999877653211000 00012233333222
Q ss_pred --EECC-CCCEEEEEeCCCEEEEEEecCCCccccceE-------eccccccEeEEEecCCCC---cEEEEEEeCCCcEEE
Q 001396 397 --VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIKV 463 (1086)
Q Consensus 397 --~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~-------~~~h~~~v~~v~~s~d~~---~l~l~s~~~d~~i~i 463 (1086)
..+. ++.++++++.||.|++|++..+........ ...+...+..++|.+++. ..++++++.|+++++
T Consensus 71 ~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred eeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 2222 345788999999999999887654332211 123556788888887643 127899999999999
Q ss_pred EeCCCCce------------------eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe------
Q 001396 464 WDAVTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------ 519 (1086)
Q Consensus 464 wd~~~~~~------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------ 519 (1086)
||+..... ......+...+.+++|++ ++ +|++|+.||+|++||+.+++....+
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l 227 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeeccccccccccccccc
Confidence 99753210 111123556688888854 54 8999999999999999988776543
Q ss_pred cCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc----------cccCCceEEEEEecCCCEEEE
Q 001396 520 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----------QLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 520 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
..|...|.+++|+|||++|++++.++. .+.|++||+++++.+..+... ..|...|.+++|+|++++|++
T Consensus 228 ~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S 306 (393)
T d1sq9a_ 228 INNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306 (393)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred ccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence 456789999999999999999986432 467999999999888877521 123489999999999999999
Q ss_pred EECCCcEEEEEcCCCeeEEEEcCCCCCC--CCceEEEecCCCEEEEE
Q 001396 590 AGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI 634 (1086)
Q Consensus 590 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~ 634 (1086)
++.|++|++||+++++++.++..|.... ....++|+|++..++++
T Consensus 307 ~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 9999999999999999999998774321 12358899999877644
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.8e-25 Score=239.18 Aligned_cols=271 Identities=16% Similarity=0.251 Sum_probs=220.2
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
..+|...|+|++| ||++||+|+.||+|+|||+.++++++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 5578889998764 89999999999999999999988666 68899999999988 566 899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCcee---EEecCCCCceEEEEEecCCCEEEEEe
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCG 542 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~ 542 (1086)
+..+........+......... ....++++..++.+++|+....... ..+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888777666555544332 3458999999999999999876643 34556666776666554 5666666
Q ss_pred eCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceE
Q 001396 543 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 622 (1086)
Q Consensus 543 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 622 (1086)
. ++.+++||..+++.+..+.++. ..+..+.++ +.++++++.||.|++||+.+...+.....+.. ...
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~ 222 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR 222 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence 4 7789999999999999998877 777777665 56899999999999999999999988875533 234
Q ss_pred EEecCCCEEEEEECCCcEEEEECCC---------CCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcc
Q 001396 623 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 693 (1086)
Q Consensus 623 ~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~ 693 (1086)
.+++++.+|++++.||.|++||+.. ...+..+.+|...|.+++++ ++
T Consensus 223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~ 278 (293)
T d1p22a2 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF 278 (293)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence 5778899999999999999999753 24566777888888877664 56
Q ss_pred cceeccccCccceee
Q 001396 694 PEISVEAENKSEVEK 708 (1086)
Q Consensus 694 ~l~s~~~d~~i~vw~ 708 (1086)
++++++.|++|++||
T Consensus 279 ~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 279 QIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEECCSSSEEEEEC
T ss_pred EEEEEecCCEEEEeC
Confidence 799999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.2e-26 Score=252.41 Aligned_cols=263 Identities=11% Similarity=-0.012 Sum_probs=198.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEe
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 465 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd 465 (1086)
+.+|++.|++|+|||++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|++|++|+
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeeee
Confidence 7789999999999999999999999999999999887655444445579999999999998664 799999999999999
Q ss_pred CCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE----ecC--CCCceEEEEEecCCCEEE
Q 001396 466 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDA--PGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 466 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~--~~~~i~~~~~s~d~~~l~ 539 (1086)
+..+........+........+. ..+...+++++.++++++||++....... ... .........+.+++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 86 LIGSPSFQALTNNEANLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 99988877776665555444333 23456899999999999999865443221 111 122445677888999999
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEECCCcEEEEEcCCCeeE------EEE--
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTI-- 610 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~------~~~-- 610 (1086)
+++. ++.|++||+..+...............+.+..+. .++..+++++.||.+.+|+....... ...
T Consensus 165 ~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 165 VGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred eecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 9886 7789999998776554443333223455555554 56778899999999999998653211 111
Q ss_pred -----cCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeec
Q 001396 611 -----DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 611 -----~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
....+...+.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 11123345789999999999999999999999999988766554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=4.4e-27 Score=260.86 Aligned_cols=316 Identities=14% Similarity=0.084 Sum_probs=222.1
Q ss_pred eEeeecC-CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC
Q 001396 332 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 410 (1086)
Q Consensus 332 ~~~~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 410 (1086)
..-.||| ||++ +|+++. |.|.+||+.++..+. + +|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~~-~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGDL-IAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGGC-EEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCCE-EEEEEC-CeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence 3467999 9995 777764 899999998887653 2 58999999999999999998765
Q ss_pred CC--EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeec
Q 001396 411 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 488 (1086)
Q Consensus 411 d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 488 (1086)
+. .|++||+++++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 7999999987643 3678999999999999999 89999999999999999999999999999999999995
Q ss_pred ccCCccEEEEEE----------cCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCC
Q 001396 489 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 558 (1086)
Q Consensus 489 ~~~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 558 (1086)
+ +|++|+.++ .++.+++||+.+++.. ....+...+..++|+|||++|++++. ++.+.+||...
T Consensus 137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred c--ceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 4 777887654 3456999999876554 44456667889999999999999875 55688898765
Q ss_pred Ceee-------eEEecccccCCceEEEEEecCCCEEEEEECCCc-----EEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 559 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 559 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
.... .....+. ..+..+.|++++..+.++..+.. +..++...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 264 (360)
T d1k32a3 210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG---------------------- 264 (360)
T ss_dssp SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB----------------------
T ss_pred cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcC----------------------
Confidence 4332 1122222 33344455666555444332211 111111111
Q ss_pred CCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccce
Q 001396 627 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 706 (1086)
Q Consensus 627 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~v 706 (1086)
........++.+..+..... .+++.++++++.++.+++
T Consensus 265 --~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~ 302 (360)
T d1k32a3 265 --DYRMIIPLESSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK 302 (360)
T ss_dssp --CEEEEEECSSEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred --ceeEeeecCCCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence 11111111111111111000 244556677777777888
Q ss_pred eeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCC
Q 001396 707 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 760 (1086)
Q Consensus 707 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 760 (1086)
||+...+. ..+.+.|.+++|+|||++|++++.||.|++|++..+
T Consensus 303 ~d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 303 YDVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp EETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 87653221 124567899999999999999999999999988654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.2e-25 Score=253.81 Aligned_cols=352 Identities=9% Similarity=0.036 Sum_probs=259.9
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeE--EEEcCC-CCCCCCceEEE
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAG-GGLPENPRICF 624 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~-~~~~~v~~v~~ 624 (1086)
++.|.+||..+++.+..+..+. .+..++|+|||+++++++.|+.+++||+.+++.. ..+... .+...+.+.+|
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence 7789999999999999998754 6899999999999999999999999999887643 333321 12122344566
Q ss_pred ecCCCEE-EEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCc
Q 001396 625 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 703 (1086)
Q Consensus 625 s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 703 (1086)
+|||++| ++++.++.|++||..+++.+..+..+...+....+.
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------ 160 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence 7899986 667789999999999998887766544433222221
Q ss_pred cceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEe-eccceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 704 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 704 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
+......+.++++|..++.+ ..++.+.+|+...... .+++.+.
T Consensus 161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----------~~~~~i~-- 204 (432)
T d1qksa2 161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTEIS-- 204 (432)
T ss_dssp -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEEEE--
T ss_pred -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----------ceEEEEc--
Confidence 33456678899999876554 5568888887543211 1112111
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcC-----CCCCeEEEEEcCCCCCEEEE
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI 855 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~las 855 (1086)
+...+..++|+|||+++++++ ++.+.++|..+++.+..+.. |........+.. .+...++
T Consensus 205 ------------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~ 271 (432)
T d1qksa2 205 ------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT 271 (432)
T ss_dssp ------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred ------------ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence 345678999999999998887 47899999999988877643 334445555555 5656655
Q ss_pred Ee-CCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCce
Q 001396 856 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 934 (1086)
Q Consensus 856 g~-~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 934 (1086)
.. .++.|.+|+..... ...|...|....++|++..+++++.+.+.++|+..... .+.. ...
T Consensus 272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~ 333 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG 333 (432)
T ss_dssp EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence 54 47899999876543 35677889999999999999999999999999876532 1111 133
Q ss_pred EEEEecCCCEEEE-EeCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEE-----CCCcEEEEEcCCCceee
Q 001396 935 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 935 ~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~-----~Dg~v~vWd~~~~~~~~ 1008 (1086)
.+++ ||++.|++ +.|+.+++|++.++..+ ..|..+|..++|||||++|+.+. .+|.|.|||..++++..
T Consensus 334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~ 408 (432)
T d1qksa2 334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 408 (432)
T ss_dssp CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence 4555 99999998 68899999998766433 35677899999999999886654 46889999999999987
Q ss_pred eec
Q 001396 1009 RIL 1011 (1086)
Q Consensus 1009 ~~~ 1011 (1086)
.+.
T Consensus 409 ~i~ 411 (432)
T d1qksa2 409 VIK 411 (432)
T ss_dssp EEC
T ss_pred Eec
Confidence 776
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=9.4e-25 Score=247.40 Aligned_cols=345 Identities=8% Similarity=0.052 Sum_probs=236.3
Q ss_pred ceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEc--CC-CCCCCCceEEE
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AG-GGLPENPRICF 624 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--~~-~~~~~v~~v~~ 624 (1086)
++.|.+||+.+++.+.++..+. .+..++|+|||+++++++.|++|++||+.+++...... .. ++...+.+++|
T Consensus 41 dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~ 116 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK 116 (426)
T ss_dssp TTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence 7789999999999999998765 58999999999999999999999999999887554332 21 12222445667
Q ss_pred ecCCCEEEEE-ECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCc
Q 001396 625 NKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 703 (1086)
Q Consensus 625 s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 703 (1086)
+|||++++++ ..++.+.+||..++........+...+....+.
T Consensus 117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 160 (426)
T d1hzua2 117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------------------------ 160 (426)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE------------------------------------
T ss_pred cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec------------------------------------
Confidence 7899987655 478999999999998887776655544333332
Q ss_pred cceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ceeEEeeccCCccccCcccccccCCceecCCCC
Q 001396 704 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 782 (1086)
Q Consensus 704 i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g 782 (1086)
+......+.+++++..++....+ +.+.+++....
T Consensus 161 -----------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~---------------------- 195 (426)
T d1hzua2 161 -----------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI---------------------- 195 (426)
T ss_dssp -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS----------------------
T ss_pred -----------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc----------------------
Confidence 22234455666777666555443 44444432211
Q ss_pred CceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCC--CCCeEEEEEcCCCCCEE--EEE
Q 001396 783 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVI--AIG 856 (1086)
Q Consensus 783 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~l--asg 856 (1086)
..+..... ++...+..++|+|++++++++. +..+.+++..+++.+...... ........+.......+ +..
T Consensus 196 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 196 DNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred cceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 10111111 2566788999999999999887 477999999999998776532 22233344333122222 233
Q ss_pred eCCCeEEEEEcCC-------ceeEEEeccccCCeEEEEEeCCCCEEEE-------EeCCCcEEEEECCCCceeeee-eee
Q 001396 857 MDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWDVDGWGIQTCR-SLQ 921 (1086)
Q Consensus 857 ~~dg~v~iwd~~~-------~~~~~~l~~h~~~v~~l~~spdg~~l~s-------~s~dg~i~iwd~~~~~~~~~~-~~~ 921 (1086)
+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+|||+.+++..... .+.
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 4577888887654 4778899999999999999999999994 556889999999987643211 111
Q ss_pred ccCCCccCCCCceEEEEecCCCEEEEE------eCCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEE
Q 001396 922 TPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV 987 (1086)
Q Consensus 922 ~~~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l 987 (1086)
...++......+.+++|||||++++++ .++.|.|||.++++.... ..++. .++|+|+|-
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~-i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV-VKDPR------LITPTGKFN 417 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE-ECCTT------CCSEEEEEE
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE-ECCCC------ccCCCceEe
Confidence 111122222468999999999988552 367899999999987765 33332 346777764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=1.2e-24 Score=240.91 Aligned_cols=333 Identities=11% Similarity=0.056 Sum_probs=229.1
Q ss_pred EEEecC-CCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCC--eEEEEEcCCCcee
Q 001396 440 DLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGAR 516 (1086)
Q Consensus 440 ~v~~s~-d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~ 516 (1086)
.-.||| ||+ ++++++ +|.|++||+.++..++ + +|...|.+++|+| ||++|++++.+. .|++||.++++..
T Consensus 7 ~~~fSP~dG~--~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~~~~~~ 79 (360)
T d1k32a3 7 AEDFSPLDGD--LIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGG--DTKVAFIHGTREGDFLGIYDYRTGKAE 79 (360)
T ss_dssp EEEEEECGGG--CEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECS--SSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccccCCCCC--EEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECC--CCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence 467999 999 677766 6799999998887665 3 6999999999954 778888777654 7999999876544
Q ss_pred EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-----
Q 001396 517 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----- 591 (1086)
Q Consensus 517 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----- 591 (1086)
.+..+...+.+++|+|||++|++++. ++.+++|+..+++....+..+. ..+.+++|+|+|++|+.++
T Consensus 80 -~~~~~~~~v~~~~~spdg~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~la~~~~~~~~ 151 (360)
T d1k32a3 80 -KFEENLGNVFAMGVDRNGKFAVVAND----RFEIMTVDLETGKPTVIERSRE---AMITDFTISDNSRFIAYGFPLKHG 151 (360)
T ss_dssp -ECCCCCCSEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEEEECSS---SCCCCEEECTTSCEEEEEEEECSS
T ss_pred -EeeCCCceEEeeeecccccccceecc----ccccccccccccceeeeeeccc---ccccchhhccceeeeeeecccccc
Confidence 56678889999999999999999986 6789999999999988888877 8889999999999998654
Q ss_pred -----CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEE
Q 001396 592 -----DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 666 (1086)
Q Consensus 592 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 666 (1086)
.++.+++||+.+++........ ..+..++|+|+|++|++++.++.+.+|+......... ....+..+.+
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~---~~~~~~~~~~ 225 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE---VVSKPFVIPL 225 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC---SCBEEEEEES
T ss_pred ceeeccccceeeeccccCceeeecccc---cccccccccCCCCEEEEEeCCCceEcccccccceeec---cccceEEEec
Confidence 3456999999998776554432 3467899999999999999999999998765432211 1111222222
Q ss_pred ccCCCceeccccCCeeeecCCCCCCcccceeccccCc---cceeeeeecCCccccccccCCcccccceEEEEEecCCceE
Q 001396 667 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK---SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 743 (1086)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~---i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 743 (1086)
.+.... .+.+ ++++..+.++..+.. .++|.+.. ..+....+...+
T Consensus 226 ~~~~~~--------~~~~----s~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~----- 273 (360)
T d1k32a3 226 IPGSPN--------PTKL----VPRSMTSEAGEYDLNDMYKRSSPINV---------------DPGDYRMIIPLE----- 273 (360)
T ss_dssp STTCCC--------GGGC----CCGGGSCCCCCCCCTTGGGGCEECSC---------------CCBCEEEEEECS-----
T ss_pred ccCccc--------cceE----CCCcCcccccceeecccccceeeccc---------------CcCceeEeeecC-----
Confidence 211100 0111 233333333222111 11111100 011111122111
Q ss_pred EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeec---CCCEEEEEe-CCeE
Q 001396 744 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVI 819 (1086)
Q Consensus 744 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~---dg~~l~~~~-dg~i 819 (1086)
..+..+.+.+ ++.++++++ ++.+
T Consensus 274 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i 300 (360)
T d1k32a3 274 -----------------------------------------------------SSILIYSVPVHGEFAAYYQGAPEKGVL 300 (360)
T ss_dssp -----------------------------------------------------SEEEEEECCCCCSHHHHHHCCCCCEEE
T ss_pred -----------------------------------------------------CCceEEEEEecCCCeeEEEecCCCCEE
Confidence 1222222222 233445554 5789
Q ss_pred EEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCCe
Q 001396 820 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 883 (1086)
Q Consensus 820 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v 883 (1086)
++||+.+++... +.+.|.+++||| ||++|++++.||.|++||+.+++...++..+..++
T Consensus 301 ~~~d~~~~~~~~----~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 301 LKYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEEETTTCCEEE----EEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred EEEECCCCeEEE----ecCCcCEEEECC-CCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 999999876543 335689999999 99999999999999999999998888877665554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=4.8e-21 Score=205.56 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=218.0
Q ss_pred eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEE-EEeCCCEEEEEEec
Q 001396 342 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH 420 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~ 420 (1086)
|+.++++.|++|.|||+++++.+.+.+ ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 566778899999999999998876522 224578999999999885 56678999999999
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEE-EEE
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI 499 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~ 499 (1086)
+++.+. .+..|. .+..++|+++++. +++++..++.+.+|+..+++....+..+ .....+++++ ++..+ +++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence 987665 455554 4688999999986 5667778889999999999998888755 4566777754 55555 566
Q ss_pred EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEE
Q 001396 500 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 579 (1086)
Q Consensus 500 s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 579 (1086)
..++.+.+|+..+......+.... ....++++|+++.++++..+ ...+.+|+....+........ ..+..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 206 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVE----AAPSGIA 206 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccc---ccccccccccceeeeeccccc----CCcceee
Confidence 678899999999988777766544 56789999999999887642 456888888888777766654 3678899
Q ss_pred EecCCCEEEEEE---CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCcEEEEECCCCCeeeecc
Q 001396 580 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 580 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~ 655 (1086)
+++++..++.++ .++.|++||+.+++.+..+..+. .+..++|+|||++|+ +++.+++|.+||+.+++.+..+.
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999887754 34689999999999998887543 368999999999874 66678999999999998776664
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=3.4e-21 Score=210.50 Aligned_cols=309 Identities=9% Similarity=0.036 Sum_probs=206.0
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
+|+++++.|++|+|||+.+++.++.+ ....+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999998876632 23345567889999999994 34677889999999999999998887654332
Q ss_pred EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC--------CCceeEEEE
Q 001396 483 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW 554 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--------~~~~~i~iw 554 (1086)
... .+..++|+||+++++++.... ..+..+.+|
T Consensus 80 ~~~---------------------------------------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 80 RVK---------------------------------------SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp EEE---------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred ccc---------------------------------------ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence 211 011245555555555443210 125578999
Q ss_pred eCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001396 555 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 634 (1086)
Q Consensus 555 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 634 (1086)
|..+++....+... ..+..++|+|+++++++++. .+.+||..+++....+..+.. .....+++++..+...
T Consensus 121 d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 191 (337)
T d1pbyb_ 121 DAETLSRRKAFEAP----RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ 191 (337)
T ss_dssp ETTTTEEEEEEECC----SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred cccCCeEEEecccc----CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence 99999988888764 36788999999999999864 478899999999888876533 2333445544332221
Q ss_pred ECC-CcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecC
Q 001396 635 ANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 713 (1086)
Q Consensus 635 ~~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~ 713 (1086)
... +....+... . ..+.........
T Consensus 192 ~~~~~~~~~~~~~-------------------~----------------------~~~~~~~~~~~~------------- 217 (337)
T d1pbyb_ 192 HESSGVMATPFYT-------------------A----------------------RKDIDPADPTAY------------- 217 (337)
T ss_dssp CTTTTEEEEEEEE-------------------E----------------------BTTSCTTSGGGE-------------
T ss_pred ccccceeeeeeee-------------------e----------------------eeccceeeeccc-------------
Confidence 111 111111000 0 011111111222
Q ss_pred CccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCC
Q 001396 714 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 793 (1086)
Q Consensus 714 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 793 (1086)
++.+.+|+... +...... ..
T Consensus 218 -----------------------------------~~~~~~~~~~~----------------------~~~~~~~-~~-- 237 (337)
T d1pbyb_ 218 -----------------------------------RTGLLTMDLET----------------------GEMAMRE-VR-- 237 (337)
T ss_dssp -----------------------------------EEEEEEEETTT----------------------CCEEEEE-EE--
T ss_pred -----------------------------------CccEEEEEcCC----------------------CcEEEEE-ec--
Confidence 22233333221 1101100 00
Q ss_pred CCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001396 794 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 873 (1086)
Q Consensus 794 ~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 873 (1086)
.+...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||+|++||..+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence 145567788899999988655 6899999999999998886 566789999999 8999999999999999999999998
Q ss_pred EEecc
Q 001396 874 SKLEG 878 (1086)
Q Consensus 874 ~~l~~ 878 (1086)
.+++-
T Consensus 315 ~~i~~ 319 (337)
T d1pbyb_ 315 GQVDL 319 (337)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88763
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=5.4e-21 Score=209.78 Aligned_cols=323 Identities=10% Similarity=0.006 Sum_probs=215.4
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccceEec-cccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEE
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 474 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~ 474 (1086)
++|+++++||++++.+++|.|||+.+++.++ ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 5789999999999999999999999997665 343 45667889999999995 457777899999999999998877
Q ss_pred eecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC--------C
Q 001396 475 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E 546 (1086)
Q Consensus 475 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--------~ 546 (1086)
+........... .+..++|+|||+++++..... .
T Consensus 78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 753322111000 112355666666655443210 1
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEec
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 626 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 626 (1086)
.+..+.+||..+++....+..+.. ...+..+.+++++..+++ ++.+.+|++.+++.+..+..+.. ...+.++|
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP 192 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence 256688999888876655544331 134556667777765544 35689999999999888876543 45566777
Q ss_pred CCCEEEEEEC-CCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccc
Q 001396 627 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 705 (1086)
Q Consensus 627 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 705 (1086)
++..++.... ++.+.+++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 213 (346)
T d1jmxb_ 193 DVLYFWPHQSPRHEFSMLYTI----------------------------------------------------------- 213 (346)
T ss_dssp BCCCCCCCCCTTCEEEEEEEE-----------------------------------------------------------
T ss_pred cccEEEEEecCCCceEeeeee-----------------------------------------------------------
Confidence 7665543322 2333332211
Q ss_pred eeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCce
Q 001396 706 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 785 (1086)
Q Consensus 706 vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 785 (1086)
..+.+....+.+...++.+.+|++... ...
T Consensus 214 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 243 (346)
T d1jmxb_ 214 ----------------------------ARFKDDKQDPATADLLYGYLSVDLKTG----------------------KTH 243 (346)
T ss_dssp ----------------------------EEC-------CCCEEEEEEEEEETTTC----------------------CEE
T ss_pred ----------------------------eeeccCceeEeeccCCceEEEEECCCC----------------------ceE
Confidence 001111111222233334444443321 111
Q ss_pred eeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 786 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 786 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
..... .+...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|++|
T Consensus 244 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~ 318 (346)
T d1jmxb_ 244 TQEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF 318 (346)
T ss_dssp EEEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred EEEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence 11100 15667788899999999998888999999999999998886 455789999999 89999999999999999
Q ss_pred EcCCceeEEEeccccC
Q 001396 866 NARSSEVISKLEGHSK 881 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~~ 881 (1086)
|+.+++.+.++..+.+
T Consensus 319 D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 319 NPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ETTTTEEEEEEECSSS
T ss_pred ECccCCEEEEEECCCC
Confidence 9999999988875443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.2e-21 Score=215.01 Aligned_cols=327 Identities=9% Similarity=-0.020 Sum_probs=217.9
Q ss_pred EEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCcEEEEECCCCCeeeeccc
Q 001396 578 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 578 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+.+++|+|||++++++ ..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 46889999999999999999999999999998875433 236799999999987555 5689999999998876654432
Q ss_pred cccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEE
Q 001396 657 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 736 (1086)
Q Consensus 657 ~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 736 (1086)
..... .+...+..++|
T Consensus 81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~ 96 (346)
T d1jmxb_ 81 SSVPG----------------------------------------------------------------EVGRSMYSFAI 96 (346)
T ss_dssp CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence 11100 01112334667
Q ss_pred ecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeC
Q 001396 737 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG 816 (1086)
Q Consensus 737 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d 816 (1086)
+|||+.++++..+.....|..... ...+.+|+..++......... .....+..+.+++++++++. +
T Consensus 97 s~DG~~l~v~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~ 162 (346)
T d1jmxb_ 97 SPDGKEVYATVNPTQRLNDHYVVK----------PPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA--G 162 (346)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE--S
T ss_pred ecCCCEEEEEecCCcceeeeeccC----------cceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEe--C
Confidence 777777766654322222111100 011223333333222111110 12344556777888876654 4
Q ss_pred CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEE
Q 001396 817 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 895 (1086)
Q Consensus 817 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l 895 (1086)
+.+.+|++.+++.+..+..+ .....+.++| ++..+ +.+..++.+.+++.. ..+.+....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 223 (346)
T d1jmxb_ 163 PDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDP 223 (346)
T ss_dssp SSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EEC-------
T ss_pred CcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee-----------------eeeccCceeE
Confidence 56899999999998888754 3456677888 44444 444445555555422 1223344556
Q ss_pred EEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCCccceeccccCCccCE
Q 001396 896 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 975 (1086)
Q Consensus 896 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v 975 (1086)
+++..++.+.+|++.++......... +. ..+..+.+++++.+++...++.+.+||..+++.+..... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~ 294 (346)
T d1jmxb_ 224 ATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTY 294 (346)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCC
T ss_pred eeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCE
Confidence 66777788999999986644322111 11 247789999999999988888999999999998876544 4568
Q ss_pred EEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeec
Q 001396 976 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 976 ~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
.+++|||||++|++++.|+.|+|||+.+++.+.++.
T Consensus 295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 899999999999999999999999999999998887
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.9e-20 Score=204.56 Aligned_cols=294 Identities=11% Similarity=0.065 Sum_probs=196.1
Q ss_pred CEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCcEEEEECCCCCeeeeccccccceee
Q 001396 585 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK 663 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 663 (1086)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence 579999999999999999999999998765545678999999999875 55678999999999987776554321110
Q ss_pred eEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceE
Q 001396 664 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 743 (1086)
Q Consensus 664 ~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 743 (1086)
+...+..++|+|+++.+
T Consensus 80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l 96 (337)
T d1pbyb_ 80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL 96 (337)
T ss_dssp ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence 11223457888888888
Q ss_pred EEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEE
Q 001396 744 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI 823 (1086)
Q Consensus 744 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd 823 (1086)
+++..+.....|... ..++.+.+||
T Consensus 97 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~d 121 (337)
T d1pbyb_ 97 AIYESPVRLELTHFE-------------------------------------------------------VQPTRVALYD 121 (337)
T ss_dssp EEEEEEEEECSSCEE-------------------------------------------------------ECCCEEEEEE
T ss_pred EEeecCCcceeeecc-------------------------------------------------------ccccceeecc
Confidence 777666444333211 1134455555
Q ss_pred ccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC---------------------
Q 001396 824 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR--------------------- 882 (1086)
Q Consensus 824 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--------------------- 882 (1086)
..+++....+.. ...+..++|+| +++++++++. .+.+||..+++....+..+...
T Consensus 122 ~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (337)
T d1pbyb_ 122 AETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp TTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred ccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccce
Confidence 555555555542 23445555665 5555555442 2455565555555444322110
Q ss_pred --eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeCCeEEEEEcCC
Q 001396 883 --VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 960 (1086)
Q Consensus 883 --v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~ 960 (1086)
+.......+.......+.++.+.+|+...+.......... . ..+..+++++++.++++. ++.+.+||+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~ 269 (337)
T d1pbyb_ 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM----D---VFYFSTAVNPAKTRAFGA-YNVLESFDLEK 269 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC----S---SCEEEEEECTTSSEEEEE-ESEEEEEETTT
T ss_pred eeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC----C---cceEEEEecccceEEEEc-cccEEEEECCC
Confidence 0011111222222233345568999998876433222211 1 247788999999988664 68999999999
Q ss_pred ccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 961 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 961 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
++.+.... +...+.+++|||||++|++++.|++|+|||+.+++.+.++..
T Consensus 270 ~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 270 NASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 99888754 456788999999999999999999999999999999988873
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=2.9e-19 Score=191.40 Aligned_cols=260 Identities=15% Similarity=0.122 Sum_probs=201.3
Q ss_pred cceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEE
Q 001396 318 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 397 (1086)
Q Consensus 318 ~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 397 (1086)
.+.++++... ..+..++|||||++++++++.++.|.+||+.+++.+.. +..| ..+..++
T Consensus 22 ~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~-~~~~~~~ 80 (301)
T d1l0qa2 22 NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG-SSPQGVA 80 (301)
T ss_dssp TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS-SSEEEEE
T ss_pred CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eecc-ccccccc
Confidence 3555666544 36889999999998778888899999999999988765 3334 3568999
Q ss_pred ECCCCCEEEEE-eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee
Q 001396 398 WSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 398 ~spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~ 476 (1086)
|++++.+++++ ..++.+.+|+..+++... .+ .+...+.+++|+||++. +++++..++.+.+|+..+++.+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TV-KTGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVINTVS 155 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEE---EE-ECSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccccccccccccceeeecccccceeee---ec-cccccceEEEeecCCCe-eeeeeccccceeeeeccccceeeecc
Confidence 99999976654 567799999999886554 33 34456788999999995 56677788999999999999988887
Q ss_pred cCCcceEEEeecccCCccEEEEEEcC-CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEe
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 555 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 555 (1086)
.+ ..+..+++++ ++..+++++.+ +.+.+|+............ ......++++++++.++.+..+. ..+.|.+||
T Consensus 156 ~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~-~~~~v~v~D 230 (301)
T d1l0qa2 156 VG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDK-YFNTVSMID 230 (301)
T ss_dssp CC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECS-SCCEEEEEE
T ss_pred cC-CCceEEEeec--cccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccc-eeeeeeeee
Confidence 54 4567777754 55666666655 6677777666655554443 34677899999999988776533 267899999
Q ss_pred CCCCeeeeEEecccccCCceEEEEEecCCCEEE-EEECCCcEEEEEcCCCeeEEEEcC
Q 001396 556 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
..+++.+..+..+ ..+..++|+|||++|+ +++.++.|++||+.+++.+.++..
T Consensus 231 ~~t~~~~~~~~~~----~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 231 TGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cCCCeEEEEEcCC----CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 9999998887754 3689999999999875 567899999999999999998864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=6.1e-18 Score=187.41 Aligned_cols=334 Identities=11% Similarity=0.020 Sum_probs=223.0
Q ss_pred ecCCCccEEEEEECCCCCEEEEE-----eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEE-----
Q 001396 386 VRDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----- 455 (1086)
Q Consensus 386 ~~~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~----- 455 (1086)
...+..++..++++|||+.+++. +..+.|.+||..+++.+. .+..+..+ .++|+|||++ ++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~--l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSE--FALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCE--EEEEeecCC
Confidence 34578899999999999999775 234579999999998665 44455433 7999999994 4444
Q ss_pred -----eCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEE
Q 001396 456 -----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 530 (1086)
Q Consensus 456 -----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 530 (1086)
..++.|.+||..+++.+..+..+......+...+ ..+.
T Consensus 89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~ 131 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNA 131 (373)
T ss_pred cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEE
Confidence 3467899999999998888776655544332211 2367
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEE-EEEECCCcEEEEEcCCCeeEEE
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
|+++++.++....+. +..+.+|+..+++..... ....++.++|+++.+ ++.+.|+.+.+|+...+.....
T Consensus 132 ~s~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~ 202 (373)
T d2madh_ 132 NTPNNADLLFFQFAA--GPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred EEeCCCcEEEEEEcC--CCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence 888888877665432 456888998877654433 345678899998766 5678999999999999887766
Q ss_pred EcCCC----CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeec
Q 001396 610 IDAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 685 (1086)
Q Consensus 610 ~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 685 (1086)
..... .........+++++. ++..+.++.+.+|+...........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------ 251 (373)
T d2madh_ 203 LVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP------------------------------ 251 (373)
T ss_pred EeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEe------------------------------
Confidence 54321 111223445555554 4455678889999877653221110
Q ss_pred CCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccC
Q 001396 686 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 765 (1086)
Q Consensus 686 ~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 765 (1086)
|+. +........+.|.+...++.+.++...
T Consensus 252 ---------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~------------ 281 (373)
T d2madh_ 252 ---------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI------------ 281 (373)
T ss_pred ---------------------ecc-----------------ccCcEEeeeeccCcceeeEEecCCCeE------------
Confidence 000 001111222233322222222222111
Q ss_pred cccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEE
Q 001396 766 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA 844 (1086)
Q Consensus 766 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 844 (1086)
..+.+++..++... ++.+.+||..+++.+..+. +...+.+++
T Consensus 282 ------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a 324 (373)
T d2madh_ 282 ------------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS 324 (373)
T ss_pred ------------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence 11222333344443 6889999999999998876 567789999
Q ss_pred EcCCCCC--EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCC
Q 001396 845 FNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 891 (1086)
Q Consensus 845 ~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spd 891 (1086)
|+| ||+ ++++++.|++|++||+.+++.+.++.++....+.|++.++
T Consensus 325 ~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 325 VAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred ECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=8.1e-18 Score=186.39 Aligned_cols=306 Identities=12% Similarity=0.020 Sum_probs=213.3
Q ss_pred ccCCCCceEeeecCCCceEEEEE----eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECC
Q 001396 325 IEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 400 (1086)
Q Consensus 325 ~~h~~~V~~~~~spdg~~lla~g----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 400 (1086)
..+..++..++++|||++++++. +..+.|.+||..+++.+.. +..+.. ..++|||
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp 75 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH 75 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence 46777999999999999865542 2346799999999998865 333333 3699999
Q ss_pred CCCEEEEEe----------CCCEEEEEEecCCCccccceEecccccc-------EeEEEecCCCCcEEEEEEeCCCcEEE
Q 001396 401 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKV 463 (1086)
Q Consensus 401 dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~v~~s~d~~~l~l~s~~~d~~i~i 463 (1086)
||++|++++ .++.|.+||..+++.+. .+..+... ...+.|++|++.+++.....++.+.+
T Consensus 76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~ 152 (373)
T d2madh_ 76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL 152 (373)
T ss_pred CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence 999999875 35789999999988655 33333332 25588999999766666667788999
Q ss_pred EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCC------CCceEEEEEecCCCE
Q 001396 464 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR 537 (1086)
Q Consensus 464 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~ 537 (1086)
|+..+++...... ...++.+++.. ...+++.+.|+.+.+|+............. ......+.+++++.+
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~~s~~g-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T d2madh_ 153 VVQGGSSDDQLLS----SPTCYHIHPGA-PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred eeccCCeEEEEec----cceeEEEecCC-CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence 9988877655443 34566665543 246678899999999999887766543321 112344556666666
Q ss_pred EEEEeeCCCCceeEEEEeCCCCeeeeEEe--ccc-------ccCCceEEEEEecCCCEEE----------EEECCCcEEE
Q 001396 538 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKI 598 (1086)
Q Consensus 538 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~----------~~s~dg~i~i 598 (1086)
++... ++.+.+|+..++....... ... ........+++++++..++ ....++.+.+
T Consensus 228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 55442 5568888877665432221 111 0012234456666665544 4456678999
Q ss_pred EEcCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCCcEEEEECCCCCeeeeccccccceeeeEEc
Q 001396 599 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 599 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 667 (1086)
||..+++.+..+.... .+..++|+|||+. +++++.|++|++||+.+++.+..+..+......+++.
T Consensus 303 ~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 303 VTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence 9999999998887543 3689999999984 4678889999999999999999988766665555543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=6.6e-18 Score=185.65 Aligned_cols=297 Identities=14% Similarity=0.098 Sum_probs=201.7
Q ss_pred CceEeeecCCCceEEEEE----eccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~g----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
++.-.+.+|||++++++. ..+++|.+||..+++.+.+ +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 455667899999855543 2356799999999998765 2223 23369999999999
Q ss_pred EEEe----------CCCEEEEEEecCCCccccceEeccc----cccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCce
Q 001396 406 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 471 (1086)
Q Consensus 406 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~ 471 (1086)
++.+ .++.|++||+.+++..........+ ......++|+++++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 4788999999998866533221122 1234568999999965555556778999999999999
Q ss_pred eEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEec------CCCCceEEEEEecCCCEEEEEeeCC
Q 001396 472 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 472 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+..+..+....... . .....++.+.||...++............ .+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~~~----~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHIFP----T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEEEE----E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceEee----c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 88887554332111 1 12245555666666666554443332221 12224556678888888888764
Q ss_pred CCceeEEEEeCCCCeee--eEEecccc-------cCCceEEEEEecCCCEEEEEECC----------CcEEEEEcCCCee
Q 001396 546 EGESFLVEWNESEGAIK--RTYQGLQL-------QHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL 606 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~--~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~s~d----------g~i~iwd~~~~~~ 606 (1086)
++.+++|+...++.. .....+.. .......+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 668999999877542 22222110 01233458899999988876533 3699999999999
Q ss_pred EEEEcCCCCCCCCceEEEecCCC--EEEEEECCCcEEEEECCCCCeeeecccccc
Q 001396 607 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSD 659 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 659 (1086)
+..+.... .+.+++|+|||+ ++++++.|+.|++||..+++.+..+..+..
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence 88886543 368999999997 345667789999999999999888765444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=7e-18 Score=185.43 Aligned_cols=330 Identities=12% Similarity=0.043 Sum_probs=201.5
Q ss_pred EEEEEECCCCCEEEEEe-----CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEE--------EeCCC
Q 001396 393 VNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDDK 459 (1086)
Q Consensus 393 V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s--------~~~d~ 459 (1086)
+.-.+.+|||+++++.. .+.+|.+||..+++.+. ++..+ .+..++|||||+.+++++ ++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 34446789999998763 45679999999998665 34333 344799999999644432 34578
Q ss_pred cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEE
Q 001396 460 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 539 (1086)
Q Consensus 460 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 539 (1086)
.|++||+.+++.+..+..+......+. .....++|++++++++
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~ 121 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLL 121 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeE
Confidence 899999999998877765543322111 0122467899999888
Q ss_pred EEeeCCCCceeEEEEeCCCCeeeeEEeccccc----CCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCC
Q 001396 540 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG 614 (1086)
Q Consensus 540 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~ 614 (1086)
..... .+..+.+|+..+++.+..+...... ......+.++++++.++... .++.+.+++...... .
T Consensus 122 v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~ 192 (355)
T d2bbkh_ 122 FYQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------E 192 (355)
T ss_dssp EEECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------T
T ss_pred EecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------e
Confidence 76543 2567899999999888777654300 01222344555554444322 223333333332211 1
Q ss_pred CCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeecc--ccccceeeeEEccCCCceeccccCCeeeecCCCCCCc
Q 001396 615 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 692 (1086)
Q Consensus 615 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~ 692 (1086)
....+....+.+++..++.++.++.+.+|++..+....... .+........+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 246 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------------------------- 246 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE--------------------------
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee--------------------------
Confidence 22235667888889999999999999999988653221100 00000000000
Q ss_pred ccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCccccccc
Q 001396 693 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 772 (1086)
Q Consensus 693 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 772 (1086)
.......+++++++..++....++...+
T Consensus 247 ----------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~~------------------ 274 (355)
T d2bbkh_ 247 ----------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEWR------------------ 274 (355)
T ss_dssp ----------------------------------EECSSSCEEEETTTTEEEEEEEECCTTC------------------
T ss_pred ----------------------------------eccceEEEEEeCCCCeEEEEeccCCcee------------------
Confidence 0001112344444444433322210000
Q ss_pred CCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC-
Q 001396 773 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN- 851 (1086)
Q Consensus 773 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~- 851 (1086)
.....+.|.+||..+++.+..+. +...+.+++|+| ||+
T Consensus 275 ---------------------------------------~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~ 313 (355)
T d2bbkh_ 275 ---------------------------------------HKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKP 313 (355)
T ss_dssp ---------------------------------------TTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSC
T ss_pred ---------------------------------------ecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCe
Confidence 00012468999999999888776 345678999999 676
Q ss_pred -EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEEeCCC
Q 001396 852 -VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 892 (1086)
Q Consensus 852 -~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg 892 (1086)
++++++.|+.|++||+.+++.+.++.++......+.+.++|
T Consensus 314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 56677889999999999999999998776666666665543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.6e-16 Score=169.68 Aligned_cols=294 Identities=11% Similarity=0.129 Sum_probs=193.3
Q ss_pred EEEEEEcCCeEEEEEcCCCceeE--EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccC
Q 001396 495 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 572 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 572 (1086)
.+++++.|++|++|+++...... ....+.+.+..++|+|||++|++++. .++.|++|++........+..+....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence 45778899999999998765433 23356678999999999999977653 26689999988765554444443334
Q ss_pred CceEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CCcEEEEECCCCCe
Q 001396 573 NSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNS 650 (1086)
Q Consensus 573 ~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~ 650 (1086)
..+..++|+|||+++++++. ++.+.+|+..............+...+.++.++|+++++++++. +..+.+|+......
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 56788999999999999874 67899999888776655544344456788999999999888775 45688888765432
Q ss_pred eeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccc
Q 001396 651 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 730 (1086)
Q Consensus 651 ~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 730 (1086)
......... . ......
T Consensus 163 ~~~~~~~~~------------------------------------------------~----------------~~~g~~ 178 (333)
T d1ri6a_ 163 LVAQDPAEV------------------------------------------------T----------------TVEGAG 178 (333)
T ss_dssp EEEEEEEEE------------------------------------------------E----------------CSTTCC
T ss_pred ceeeeceee------------------------------------------------e----------------eecCCC
Confidence 221110000 0 002234
Q ss_pred eEEEEEecCCceEEEeec-cceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCC
Q 001396 731 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 809 (1086)
Q Consensus 731 i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~ 809 (1086)
...++|++++..++.... .+...+|++........... .+.... ...........+++++|++
T Consensus 179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ------TLDMMP----------ENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE------EEECSC----------TTCCSCCCEEEEEECTTSS
T ss_pred ccEEEEeccceeEEeeccccCceEEEeecccccceeeee------eeeeee----------cCCCccccceeEEEecccC
Confidence 567888888887766543 46667776543321100000 000000 0011345567789999999
Q ss_pred EEEEEe--CCeEEEEEccCceEE---EEEcCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEE--cCCcee
Q 001396 810 YLFSAS--GGVISLYIVMTFKTI---LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYN--ARSSEV 872 (1086)
Q Consensus 810 ~l~~~~--dg~i~iwd~~~~~~~---~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd--~~~~~~ 872 (1086)
+++... ++.+.+|++...... .........+..++|+| ||++|++++ .++.|++|+ ..+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 888776 578999988754322 22223445678899999 888877665 468999995 466654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3e-16 Score=170.31 Aligned_cols=281 Identities=14% Similarity=0.147 Sum_probs=187.2
Q ss_pred eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe-CCCEEEEEEec
Q 001396 342 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 420 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 420 (1086)
.++++++.|++|+|||+.+...+.... ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 356788899999999997654432211 224778999999999999996654 58999999998
Q ss_pred CCCccccceEeccccccEeEEEecCCCCcEEEEEEe-CCCcEEEEeCCCCceeEE--eecCCcceEEEeecccCCccEEE
Q 001396 421 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIF 497 (1086)
Q Consensus 421 ~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~-~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~ 497 (1086)
.+...........+...+..++|+|||+ +|++++ .++.+.+|+......... ...+...+.++.+++ ++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence 7654432222234455678899999999 555555 577899998777655433 345666777888854 666666
Q ss_pred EEE-cCCeEEEEEcCCCceeE------EecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC--eee--eEEe
Q 001396 498 SIS-VDGKIKAWLYDSLGARV------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIK--RTYQ 566 (1086)
Q Consensus 498 s~s-~dg~i~vwd~~~~~~~~------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~--~~~~ 566 (1086)
.++ .+..|.+|+........ ...........++|++++..++..... .....+|+.... ... ....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence 665 55679999987654432 122334466889999999998876542 334556654432 211 1111
Q ss_pred c---ccccCCceEEEEEecCCCEEEEE-ECCCcEEEEEcCCCeeEEEEcC-CCCCCCCceEEEecCCCEEEEEEC-CCcE
Q 001396 567 G---LQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIAN-ENRI 640 (1086)
Q Consensus 567 ~---~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~-dg~i 640 (1086)
. ..........+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 1 11122456778999999988775 4678899999876543322211 111224678999999999887754 6889
Q ss_pred EEEECC
Q 001396 641 KILETP 646 (1086)
Q Consensus 641 ~iw~~~ 646 (1086)
.+|++.
T Consensus 301 ~v~~id 306 (333)
T d1ri6a_ 301 SVYEIV 306 (333)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=1.2e-14 Score=159.88 Aligned_cols=292 Identities=11% Similarity=0.010 Sum_probs=194.8
Q ss_pred cCCCCceEeeecCCCceEEEE--EeccCc--EEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCC
Q 001396 326 EGSSSPMSMDFHPVQHTLLLV--GTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 401 (1086)
Q Consensus 326 ~h~~~V~~~~~spdg~~lla~--gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 401 (1086)
.+.+....++.++|++...++ ...+++ |.+||..+++.+.. ..++... .++|+||
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spD 75 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHS 75 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTT
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCC
Confidence 345566777888998853333 344454 66779999988764 2233333 5899999
Q ss_pred CCEEEEEe----------CCCEEEEEEecCCCccccceEecccc-------ccEeEEEecCCCCcEEEEEEeCCCcEEEE
Q 001396 402 GSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVW 464 (1086)
Q Consensus 402 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~d~~~l~l~s~~~d~~i~iw 464 (1086)
|+.|++.+ .|+.|.+||..+++.+.. +..+. .....++|+|||++ ++++...++.+.+|
T Consensus 76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~ 151 (368)
T d1mdah_ 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGL 151 (368)
T ss_dssp SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEE
T ss_pred CCEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEE
Confidence 99999864 367899999999876553 22221 22346999999996 33444568999999
Q ss_pred eCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe------cCCCCceEEEEEecCCCEE
Q 001396 465 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRL 538 (1086)
Q Consensus 465 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~~~~~i~~~~~s~d~~~l 538 (1086)
|+.+++.+..+..+..... .+. ....++..+.||.+.+|++......... ..+...+..+.+.+++..+
T Consensus 152 d~~~~~~~~~~~~~~~~~~----~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 152 SVPGASDDQLTKSASCFHI----HPG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EETTTEEEEEEECSSCCCC----EEE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred ECCCCcEeEEeeccCcceE----ccC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence 9999999988876654322 112 2246777888999999988766544322 2223344567777887776
Q ss_pred EEEeeCCCCceeEEEEeCCCCeeeeEEe--ccc-------ccCCceEEEEEecCCCEEEEEECC---------CcEEEEE
Q 001396 539 FSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWD 600 (1086)
Q Consensus 539 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd 600 (1086)
...+ +.+++++...+....... ... ........+++++++..++....+ ..|.+||
T Consensus 227 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 227 WAVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp ECBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred EecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 6542 235566655444332211 100 001223457889998887765322 3589999
Q ss_pred cCCCeeEEEEcCCCCCCCCceEEEecCCC-E-EEEEECCCcEEEEECCCCCeeeeccc
Q 001396 601 MNKVQLLTTIDAGGGLPENPRICFNKNGT-L-LAVIANENRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~-l~~~~~dg~i~iw~~~~~~~~~~~~~ 656 (1086)
..+++.+..+.... .+..++|+|||+ + ++++..++.|++||..+++.+..+..
T Consensus 301 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 301 ASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp SSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 99999888776442 368899999997 3 45566789999999999988877763
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=2.1e-13 Score=155.38 Aligned_cols=221 Identities=13% Similarity=0.088 Sum_probs=140.7
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 410 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 410 (1086)
..+.|.+|+++ +. ..|+.+.+||+.+++.... +....+..|...|.++.|||||++||+++.
T Consensus 20 ~~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 35789999984 55 3578999999999986532 111225667789999999999999998853
Q ss_pred --------CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCC---
Q 001396 411 --------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--- 479 (1086)
Q Consensus 411 --------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--- 479 (1086)
++.+.|||+.+++.. .+..|...+..+.|||||+ .++.. .++.+.+|+..+++..+....+.
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 567899999998643 3668889999999999999 56654 47789999999888765433221
Q ss_pred ---------------cceEEEeecccCCccEEEEEEcCCe-EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEee
Q 001396 480 ---------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 480 ---------------~~v~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
+....+.| ++||+.|+....|.+ +..|.+...... .........+.+...+.
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~------- 223 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGA------- 223 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTS-------
T ss_pred ccccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeeccccccc-------
Confidence 22334456 568889988876544 554433211000 00111122222222221
Q ss_pred CCCCceeEEEEeCCCCeeeeEEeccc--------ccCCceEEEEEecCCCEEEE
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~ 589 (1086)
......+.+|++.++........+. .....+..+.|.+++..++.
T Consensus 224 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 224 -VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp -CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred -cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 1124468889988776543332211 11234667888888875554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=4.4e-14 Score=155.23 Aligned_cols=315 Identities=13% Similarity=-0.007 Sum_probs=193.4
Q ss_pred ceEEEEEecCCCEEEE-EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----------CC
Q 001396 525 GCTRMAYSANGRRLFS-CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DD 593 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~-~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~d 593 (1086)
....++..++++.... ......+...+++||..+++.+....++. . ..++|+|||+++++.+ .|
T Consensus 21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~--~~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---C--CcceECCCCCEEEEEcccCccccccccC
Confidence 3344456778886533 22344557789999999999999888755 3 3588999999998864 36
Q ss_pred CcEEEEEcCCCeeEEEEcCCCCC-----CCCceEEEecCCCEEEEEE-CCCcEEEEECCCCCeeeeccccccceeeeEEc
Q 001396 594 HVIKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 594 g~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 667 (1086)
+.|++||..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.+++....+..+.... +.
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~ 171 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IH 171 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CE
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----Ec
Confidence 77999999999999887644221 2245799999999998876 57999999999987776655432221 01
Q ss_pred cCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEee
Q 001396 668 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 747 (1086)
Q Consensus 668 p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 747 (1086)
|. .....+.+ ++||+.++....++....|... ......+...+....+.+++..+...
T Consensus 172 ~~-------~~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~- 229 (368)
T d1mdah_ 172 PG-------AAATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWAV- 229 (368)
T ss_dssp EE-------ETTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEECB-
T ss_pred cC-------CCceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEec-
Confidence 10 00001111 3444444433333333333211 11111133344456667776644433
Q ss_pred ccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--C--------C
Q 001396 748 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------G 817 (1086)
Q Consensus 748 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--d--------g 817 (1086)
.+.+.++++.... +.+++...+......... -.......+++++++..+.+.. + .
T Consensus 230 -~~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~ 294 (368)
T d1mdah_ 230 -ASSILQGDIPAAG------------ATMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294 (368)
T ss_dssp -SSCCEEEECCSSC------------CEEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEE
T ss_pred -CCCEEEEeecCCc------------eEEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCc
Confidence 4455565554432 222222222111100000 0112234588999998877653 1 2
Q ss_pred eEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCCceeEEEeccccCCeEEEEE
Q 001396 818 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 888 (1086)
Q Consensus 818 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~v~~l~~ 888 (1086)
.|.+||..+++.+..+. +...+.+++|+| |++ +++++..|+.|++||..+++.+..++.... -..|++
T Consensus 295 ~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp EEEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred eEEEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 49999999999888775 345688999999 665 456777889999999999999999885433 344443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=5e-14 Score=160.59 Aligned_cols=377 Identities=11% Similarity=0.029 Sum_probs=212.6
Q ss_pred EEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc--ccCCceEEEEEecCCCEEEEEEC---------CCcE
Q 001396 528 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD---------DHVI 596 (1086)
Q Consensus 528 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~---------dg~i 596 (1086)
.+.|.++++++... ++.+.+||..+++....+..+. .+...|.++.|+||+++|+.++. ++.+
T Consensus 21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 46788999877642 4459999999998877666543 23367899999999999998753 5678
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceecc
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 676 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 676 (1086)
.+||+.+++... +..+ ...+..+.|||||+.+|... ++.+.+|+..++............+
T Consensus 95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~--------------- 155 (470)
T d2bgra1 95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI--------------- 155 (470)
T ss_dssp EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT---------------
T ss_pred EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc---------------
Confidence 999999987543 3333 34578999999999999865 5789999998876554433211111
Q ss_pred ccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccc-eeEEe
Q 001396 677 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMW 755 (1086)
Q Consensus 677 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~vw 755 (1086)
...+..+ |... ....+....+.|||||+.|+....|. .+..|
T Consensus 156 ------------------~~~g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 156 ------------------IYNGITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp ------------------EEESBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred ------------------ccccccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceE
Confidence 0011000 0000 00122344578999999999887653 35444
Q ss_pred eccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEE--
Q 001396 756 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI-- 833 (1086)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~-- 833 (1086)
.+..... .. ........+.+...+... .+..+.+|++.++......
T Consensus 199 ~~~~~~~-----------------~~------------~~~~~~~~~~~~~~g~~~---~~~~~~v~~~~~~~~~~~~~~ 246 (470)
T d2bgra1 199 EYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATS 246 (470)
T ss_dssp EEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEEGGGCCSSSCCCE
T ss_pred EEEeecc-----------------CC------------CCCCeeeeeccccccccC---CcceEEEEECCCcceeeeccc
Confidence 4321100 00 001111112221111100 1235677887655432111
Q ss_pred ---------cCCCCCeEEEEEcCCCCCEEEEE-eCCC-----eEEEEEcCCceeEEEec-------------cccCCeEE
Q 001396 834 ---------MPPSPTATSLAFNPHDNNVIAIG-MDDS-----TILIYNARSSEVISKLE-------------GHSKRVTG 885 (1086)
Q Consensus 834 ---------~~~~~~i~~l~~s~~d~~~lasg-~~dg-----~v~iwd~~~~~~~~~l~-------------~h~~~v~~ 885 (1086)
......+..+.|.+ ++++++.. ...+ .+..+|..++....... .|....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~-- 323 (470)
T d2bgra1 247 IQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE-- 323 (470)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC--
T ss_pred cccCCccccCCCCceEEEEEEcC-CCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCC--
Confidence 12233467788888 66655543 2222 23344555555432211 122222
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEE--ECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-E-eC----CeEEE
Q 001396 886 LVFSDAL--NILVSSGGDAQIFVW--DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HE----THLAI 955 (1086)
Q Consensus 886 l~~spdg--~~l~s~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~-~d----~~i~v 955 (1086)
..|++++ .+++.+..||...|| +..++. ..+...+.. .|..+ ++++++.+.. + .+ ..-.|
T Consensus 324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-----~~~lt~g~~----~v~~~-~~~d~~~iyf~a~~~~~~p~~~~l 393 (470)
T d2bgra1 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI-EALTSDYLYYISNEYKGMPGGRNL 393 (470)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSC-----CEESCCSSS----CEEEE-EEECSSEEEEEESCGGGCTTCBEE
T ss_pred ceeeecCCCcEEEEeccCcCceeEEEeccCCc-----eeeeccCCe----eEEEE-EEECCCEEEEEEecCCCCcceEEE
Confidence 3444443 445667778765555 554433 222233332 35555 5555665533 2 22 12234
Q ss_pred E--EcCCcc---ceeccccCCccCEEEEEEeCCCCEEEE-EEC--CCcEEEEEcCCCceeeeec
Q 001396 956 Y--EAEELT---CLKQWFPISSVPISQATFSCDCRMVFT-SFV--DGTLSIHEASNLEVQCRIL 1011 (1086)
Q Consensus 956 w--d~~~~~---~~~~~~~~h~~~v~~l~fs~dg~~l~s-~~~--Dg~v~vWd~~~~~~~~~~~ 1011 (1086)
| ++..+. ++.....+|...+.+++|||||++++. ++. .=.+.+|+..+|+.+..+.
T Consensus 394 y~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 394 YKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp EEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 4 444333 222224468889999999999999773 332 3358999999999988776
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=1.6e-15 Score=163.72 Aligned_cols=360 Identities=10% Similarity=-0.001 Sum_probs=219.0
Q ss_pred CCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCCEEEEEE
Q 001396 339 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 418 (1086)
Q Consensus 339 dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd 418 (1086)
|+-|.+++|+.+|.|.||++.+++.++.. + .|+|++... .|..+.+.+++.
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~I------------------------p----Vfspd~~~g-~g~~~es~~vl~ 59 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRI------------------------P----VFNVDSATG-WGITNESKEILG 59 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEE------------------------C----SSSBCTTTC-TTTSHHHHHHHC
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEE------------------------E----eEcCCCCEE-EEECCccceEEe
Confidence 44567888889999999999999888641 1 267777542 232222222221
Q ss_pred ecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-CCcceEEEeecccCCccEEE
Q 001396 419 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIF 497 (1086)
Q Consensus 419 ~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~ 497 (1086)
++.... .-..|.-......++|||++ ++++...+++|.++|++++++...+.- +...+..++|+++++-.+++
T Consensus 60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence 111111 12245555667778999995 456667888999999999998887653 56778889997655444665
Q ss_pred EEEcCC-----------------eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 498 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 498 s~s~dg-----------------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
..+.+. .+..+|..+.+........ .....+.++|||+++++.+.+.+ .+..++..+..
T Consensus 134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~ 209 (441)
T d1qnia2 134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRN 209 (441)
T ss_dssp EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCS
T ss_pred eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCC---ceEEEeccCcc
Confidence 555442 2355777776666555433 34678999999999998765322 23333444444
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE-EECCCc
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR 639 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~ 639 (1086)
....+.... ....+.+.|+|+++.. +.++.+.+++....+.+..++.... ...+.++|||+++++ +..+++
T Consensus 210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t 281 (441)
T d1qnia2 210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT 281 (441)
T ss_dssp SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence 333332211 1223456788887655 4467888888887777888775533 478999999998765 566899
Q ss_pred EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccc
Q 001396 640 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 719 (1086)
Q Consensus 640 i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 719 (1086)
|.+||+.... ..+.++.....++...+ .
T Consensus 282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~----------------------------------------------~---- 309 (441)
T d1qnia2 282 VSVIAIDKLD--DLFEDKIELRDTIVAEP----------------------------------------------E---- 309 (441)
T ss_dssp EEEEEGGGHH--HHTTTSSCGGGGEEECC----------------------------------------------B----
T ss_pred EEEEEeehhh--hHhhccCCcceEEEeec----------------------------------------------c----
Confidence 9999987421 11111111111111100 0
Q ss_pred cccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCe
Q 001396 720 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 799 (1086)
Q Consensus 720 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 799 (1086)
..-.....+|.++|..+.+...|..|..|++........+.. .-.+|+.. ...+ ..+|...+
T Consensus 310 -------~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~----~~~v~~~~------~v~y-~~GH~~~~ 371 (441)
T d1qnia2 310 -------LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR----VNYIRQKL------DVQY-QPGHNHAS 371 (441)
T ss_dssp -------CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC----CCCEEEEE------ECSS-CEEEEEET
T ss_pred -------cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC----CceeEecc------cccc-CCCCCccc
Confidence 011123457899998888888899999999753211111110 11122200 0000 11466677
Q ss_pred eEEEeecCCCEEEEEe
Q 001396 800 PCFALSKNDAYLFSAS 815 (1086)
Q Consensus 800 ~~l~~s~dg~~l~~~~ 815 (1086)
.+.+++|||+||++++
T Consensus 372 ~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 372 LTESRDADGKWLVVLS 387 (441)
T ss_dssp TTTSTTCCCCEEEEEE
T ss_pred cccccCCCCcEEEecC
Confidence 7788999999999995
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=3.8e-14 Score=152.87 Aligned_cols=297 Identities=10% Similarity=0.020 Sum_probs=187.7
Q ss_pred EEEEEEcCCeEEEEEcCCCceeEEecCC------------------------------CCceEEEEEecCCCEEEEEeeC
Q 001396 495 FIFSISVDGKIKAWLYDSLGARVDYDAP------------------------------GLGCTRMAYSANGRRLFSCGTS 544 (1086)
Q Consensus 495 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------------------~~~i~~~~~s~d~~~l~~~~~~ 544 (1086)
.+++++.+|.|++|++.+.+....+... ........++|||++|++...
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~- 91 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK- 91 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET-
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC-
Confidence 3677888999999999888776654221 112333445799999988753
Q ss_pred CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCE--EEEEECCC-----------------cEEEEEcCCCe
Q 001396 545 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH-----------------VIKIWDMNKVQ 605 (1086)
Q Consensus 545 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~s~dg-----------------~i~iwd~~~~~ 605 (1086)
.+.+|.++|+.+++..+.+.-.. ...+..++|+|++++ +++.+++. .+..+|..+.+
T Consensus 92 --~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 92 --ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp --TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred --CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 36689999999999888776432 267899999999984 44444432 24568888888
Q ss_pred eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCc-EEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeee
Q 001396 606 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 684 (1086)
Q Consensus 606 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~ 684 (1086)
...++...+. ...++|+|+|+++++.+.+.. +..++..+......
T Consensus 168 v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~------------------------------- 213 (441)
T d1qnia2 168 VAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW------------------------------- 213 (441)
T ss_dssp EEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE-------------------------------
T ss_pred eeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEEE-------------------------------
Confidence 8877766543 578999999999998876532 21111111111100
Q ss_pred cCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCcccc
Q 001396 685 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 764 (1086)
Q Consensus 685 ~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 764 (1086)
+.+.+. -..+.++++|+++.. +.++.+.++....
T Consensus 214 -------------------i~v~n~---------------------p~~~~~~~dGk~~~v-~~~~v~vvd~~~~----- 247 (441)
T d1qnia2 214 -------------------VVVFNV---------------------ERIAAAVKAGNFKTI-GDSKVPVVDGRGE----- 247 (441)
T ss_dssp -------------------EEEEEH---------------------HHHHHHHHTTCCBCC-TTCCCCEEECSSS-----
T ss_pred -------------------EEeCCc---------------------cceEEEecCCCEEEe-CCCCcEEEEcccC-----
Confidence 000000 011223455554332 2234444433211
Q ss_pred CcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceE-----------EE
Q 001396 765 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-----------IL 831 (1086)
Q Consensus 765 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~-----------~~ 831 (1086)
...+..... ......++++|||+++++++ +++|.+||+.+... +.
T Consensus 248 -----------------~~v~~~IPv-----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~ 305 (441)
T d1qnia2 248 -----------------SEFTRYIPV-----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV 305 (441)
T ss_dssp -----------------CSSEEEECC-----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred -----------------CceEEEEeC-----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence 111222211 22345789999999998876 69999999875321 11
Q ss_pred EEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc----------eeEEEe-----ccccCCeEEEEEeCCCCEEE
Q 001396 832 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHSKRVTGLVFSDALNILV 896 (1086)
Q Consensus 832 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----------~~~~~l-----~~h~~~v~~l~~spdg~~l~ 896 (1086)
-.....-.....+|++ +|..+.+...|..|..|++... ..+..+ .||...+.+.+++|||++|+
T Consensus 306 ~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~ 384 (441)
T d1qnia2 306 AEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLV 384 (441)
T ss_dssp ECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEE
T ss_pred eecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEE
Confidence 1111112345578999 8889999999999999998521 233344 57888888889999999999
Q ss_pred EEe
Q 001396 897 SSG 899 (1086)
Q Consensus 897 s~s 899 (1086)
+++
T Consensus 385 s~~ 387 (441)
T d1qnia2 385 VLS 387 (441)
T ss_dssp EEE
T ss_pred ecC
Confidence 994
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.27 E-value=5.8e-09 Score=112.52 Aligned_cols=160 Identities=12% Similarity=0.122 Sum_probs=102.9
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEEccC-ceEE--EEE--cCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcC
Q 001396 797 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNAR 868 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~ 868 (1086)
..+.+++|+|||+++++++ .+.|.+|+... +... ... .......+.++|+| +++++.+ ...+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 3467899999999999887 36788887653 3222 222 22456789999999 7777655 4467899999997
Q ss_pred CceeEE-----Eec--------------cccCCeEEEEEeCCCCEEEEEeC-C-----CcEEEEECCCCce-eeeeeeec
Q 001396 869 SSEVIS-----KLE--------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWGI-QTCRSLQT 922 (1086)
Q Consensus 869 ~~~~~~-----~l~--------------~h~~~v~~l~~spdg~~l~s~s~-d-----g~i~iwd~~~~~~-~~~~~~~~ 922 (1086)
.++... .+. .+......+.++|||++|+++.+ + +.|..|++..... .....+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 654221 110 12223567899999999887643 1 2377777765322 11112211
Q ss_pred cCCCccCCCCceEEEEec-CCCEEEEE--eCCeEEEEEcCC
Q 001396 923 PDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEE 960 (1086)
Q Consensus 923 ~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~i~vwd~~~ 960 (1086)
.... ......++|+| +|++|+++ .++.|.+|++..
T Consensus 304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 1111 12456799998 89998885 668899998754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=2.2e-09 Score=116.01 Aligned_cols=255 Identities=10% Similarity=0.107 Sum_probs=152.6
Q ss_pred CCCCeeEEEeecCCCEEEEEeCCeEEEEEccC-ceEEEEE-cCCCCCeEEEEEcCCCCCEE--EEEe-CCCeEEEEEcCC
Q 001396 795 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNVI--AIGM-DDSTILIYNARS 869 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~s~~d~~~l--asg~-~dg~v~iwd~~~ 869 (1086)
....+.-|+|+||++.|.++..+.+..|.+.. +...... .........+++++ +++.+ +++. ..++|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34456789999999999998888888887763 3332221 12233456778888 67643 3322 235565554322
Q ss_pred -c------------ee---EEE-eccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCc-eeeeeeeeccCCCccCC
Q 001396 870 -S------------EV---ISK-LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG-IQTCRSLQTPDGVMTLA 930 (1086)
Q Consensus 870 -~------------~~---~~~-l~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~ 930 (1086)
+ .. ... -......+.+++|+|||+++++++. ...|.+|++.... .............
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g---- 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG---- 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT----
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC----
Confidence 1 10 000 1112234789999999998888764 3468888766432 2211122222111
Q ss_pred CCceEEEEecCCCEEEEE--eCCeEEEEEcCCccceeccc------------------cCCccCEEEEEEeCCCCEEEEE
Q 001396 931 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS 990 (1086)
Q Consensus 931 ~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~------------------~~h~~~v~~l~fs~dg~~l~s~ 990 (1086)
...+.++|+|||+++.+. .+++|.+|++..+....... ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 357899999999998774 46789999987654321100 0123346688999999999877
Q ss_pred EC------CCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCCEEEEE-eCCCcEEEEccCCCC
Q 001396 991 FV------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 991 ~~------Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~~dg~v~vw~~~~~~ 1058 (1086)
.. .+.|..|++.....+.+.......+. ..-.+..++++|.+|++|+++ ..++.|.+|++....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEc----CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 43 22377788765433322211111111 113456789998667866665 577899999986543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.1e-09 Score=118.33 Aligned_cols=374 Identities=9% Similarity=-0.012 Sum_probs=204.6
Q ss_pred EEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE---------CCCcEEEEE
Q 001396 530 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD 600 (1086)
Q Consensus 530 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---------~dg~i~iwd 600 (1086)
.|.+++.++... .++.|.+||+.+++....+.........+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 467777765432 245699999998877555555443335677888999999988764 357789999
Q ss_pred cCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCC
Q 001396 601 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 680 (1086)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~ 680 (1086)
+.++..............+....|||||+.+|... ++.|.+.+..++...+........
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~-------------------- 156 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG-------------------- 156 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc--------------------
Confidence 99887655433333334466789999999998876 467888877765444332211100
Q ss_pred eeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeecc-ceeEEeeccC
Q 001396 681 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR 759 (1086)
Q Consensus 681 ~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~ 759 (1086)
.+..|-. -|-.+. .....-.++.|||||+.|+....| ..+..+.+..
T Consensus 157 -------------~i~nG~~-----d~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~ 204 (465)
T d1xfda1 157 -------------VIYNGLS-----DWLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT 204 (465)
T ss_dssp -------------TEEEEEC-----CHHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred -------------eeecccc-----chhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence 0000000 010000 000112345677777777666533 4444444432
Q ss_pred Ccc-----------ccCcccccccCCceecCCCCCceeeecCCC--CCCCCCeeEEEeecCCCEEEEEeC-----CeEEE
Q 001396 760 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL 821 (1086)
Q Consensus 760 ~~~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~~~~d-----g~i~i 821 (1086)
... ...|.......+.++++.++.......... .....-+..+.|++|+++++...+ ..+.+
T Consensus 205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~ 284 (465)
T d1xfda1 205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (465)
T ss_dssp CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence 110 111222222335566665554222111110 012223677899999987777652 24888
Q ss_pred EEccCceEEEEEcCCC-CC----eEEEEEcCCCCCEE-EE--EeCCC--eEEEEEcC------CceeEEEeccccCCeEE
Q 001396 822 YIVMTFKTILTIMPPS-PT----ATSLAFNPHDNNVI-AI--GMDDS--TILIYNAR------SSEVISKLEGHSKRVTG 885 (1086)
Q Consensus 822 wd~~~~~~~~~~~~~~-~~----i~~l~~s~~d~~~l-as--g~~dg--~v~iwd~~------~~~~~~~l~~h~~~v~~ 885 (1086)
+|..+++....+.... .. -....|++ ||+.+ .. ...+| .++...+. .+..+..+....-.|..
T Consensus 285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~ 363 (465)
T d1xfda1 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK 363 (465)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence 9999998766544222 21 23467899 55532 22 22333 34444332 23344455444445666
Q ss_pred E-EEeCCCCEEEE-EeCCC--cEEEEEC--CCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEEeC----CeEEE
Q 001396 886 L-VFSDALNILVS-SGGDA--QIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAI 955 (1086)
Q Consensus 886 l-~~spdg~~l~s-~s~dg--~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----~~i~v 955 (1086)
+ +|.++++.+.. +..++ .-.||.+ .++.. ..++....... .....+.|||+|++++.... -.+.+
T Consensus 364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~ 438 (465)
T d1xfda1 364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (465)
T ss_dssp EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence 4 68888877653 43332 2335554 33221 12222211111 24678999999999987422 24777
Q ss_pred EEcCCccceecc
Q 001396 956 YEAEELTCLKQW 967 (1086)
Q Consensus 956 wd~~~~~~~~~~ 967 (1086)
++..+++.+..+
T Consensus 439 ~~~~~~~~~~~L 450 (465)
T d1xfda1 439 HNTTDKKKMFDL 450 (465)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEE
Confidence 777777766554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.4e-08 Score=104.73 Aligned_cols=222 Identities=10% Similarity=0.128 Sum_probs=134.1
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCC---EEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEE-
Q 001396 388 DPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV- 463 (1086)
Q Consensus 388 ~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~i- 463 (1086)
.+...+...+|||||++||...... .+.+.+..++... .+..+.+......|+|+|+.+.+ ....++...+
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i~~-~~~~~~~~~~~ 110 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKLAF-ALSKTGSLNLY 110 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEEEE-EECTTSSCEEE
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCeeeE-eeecCCcccee
Confidence 3557788999999999999875443 4666676665432 34567788899999999996322 2333333333
Q ss_pred -EeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCe--EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEE
Q 001396 464 -WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 540 (1086)
Q Consensus 464 -wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 540 (1086)
+......... ............+... ....+++...+|. |.+.++...... .............++|+++.++.
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 111 VMDLASGQIRQ-VTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp EEETTTCCEEE-CCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred eccccccccee-eeeccccccccccccc-cccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEE
Confidence 3322222222 2223333333333332 2234455555554 444455444332 33444556778899999999998
Q ss_pred EeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC---CCcEEEEEcCCCeeEEEEcCCCCCC
Q 001396 541 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLP 617 (1086)
Q Consensus 541 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~ 617 (1086)
..... +...+.+.+...+... .. ... .......|+|||++|+..+. ...|+++++..+.... +.... .
T Consensus 188 ~~~~~-~~~~i~~~~~~~~~~~-~~-~~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g 258 (269)
T d2hqsa1 188 VSSNG-GQQHIAKQDLATGGVQ-VL-SST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--G 258 (269)
T ss_dssp EEECS-SCEEEEEEETTTCCEE-EC-CCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--S
T ss_pred EeecC-CceeeeEeecccccce-Ee-ecC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--C
Confidence 77533 4567777787766542 22 222 45677889999999986553 3468899998776544 33222 2
Q ss_pred CCceEEEec
Q 001396 618 ENPRICFNK 626 (1086)
Q Consensus 618 ~v~~v~~s~ 626 (1086)
.+...+|||
T Consensus 259 ~~~~p~WSP 267 (269)
T d2hqsa1 259 QVKFPAWSP 267 (269)
T ss_dssp EEEEEEECC
T ss_pred cEEeEEeCC
Confidence 356778887
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.11 E-value=1.5e-08 Score=106.19 Aligned_cols=244 Identities=11% Similarity=0.053 Sum_probs=160.6
Q ss_pred CccceeeeeccCCCCceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEE
Q 001396 316 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 395 (1086)
Q Consensus 316 ~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 395 (1086)
-|.+.+..+...+ .+..++++|||+ |+++...+++|..||....... +......+.+
T Consensus 16 ~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~g 72 (302)
T d2p4oa1 16 APAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSG 72 (302)
T ss_dssp CCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEE
T ss_pred CcccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcce
Confidence 3455566666544 688999999998 7888888999988886543222 2234568999
Q ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEe
Q 001396 396 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 475 (1086)
Q Consensus 396 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~ 475 (1086)
++|+|||+++++...++.+.+|+......................+++.++++ ++++.+.++.+..+|..++......
T Consensus 73 la~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~ 150 (302)
T d2p4oa1 73 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL 150 (302)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEe
Confidence 99999999999988888888888766443222111223445688999999998 7888888899999998776543222
Q ss_pred ec--------C--CcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE--ecCCCCceEEEEEecCCCEEEEEee
Q 001396 476 EG--------H--GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGT 543 (1086)
Q Consensus 476 ~~--------h--~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~d~~~l~~~~~ 543 (1086)
.. + ......+.+ + ++.++++.+..+.|..++......... ..........++++++|++.++...
T Consensus 151 ~~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~ 227 (302)
T d2p4oa1 151 EHPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI 227 (302)
T ss_dssp ECGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred cCCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC
Confidence 11 1 122334444 3 234667778888898888765443221 1112234567999999997776543
Q ss_pred CCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEE---ecCCCEEEEEECC
Q 001396 544 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD 593 (1086)
Q Consensus 544 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~s~d 593 (1086)
++.|..++... +......... ......+++| ++|++.|+.++..
T Consensus 228 ----~~~V~~i~p~G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 ----YNSVVRIAPDR-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ----TCCEEEECTTC-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ----CCcEEEECCCC-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence 45688888653 3333332211 1246789999 6788888776544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.2e-07 Score=97.44 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=146.6
Q ss_pred CCccceeeeeccCCCCceEeeecCCCceEEEEEeccC--cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCcc
Q 001396 315 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 392 (1086)
Q Consensus 315 ~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 392 (1086)
+......+.+..+...+..-+|||||++|+.+....+ .+.+.+..++.... +..+...
T Consensus 25 d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 84 (269)
T d2hqsa1 25 DYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRH 84 (269)
T ss_dssp ETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSC
T ss_pred cCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeecc
Confidence 3344445556666678899999999998555544443 35555665555432 4457788
Q ss_pred EEEEEECCCCCEEEEEeC-CCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCC--cEEEEeCCCC
Q 001396 393 VNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG 469 (1086)
Q Consensus 393 V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~--~i~iwd~~~~ 469 (1086)
+....|||||+.++.... ++...++......... .....+........++++++. .+++...++ .|.+.++..+
T Consensus 85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~ 161 (269)
T d2hqsa1 85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGG 161 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSS
T ss_pred cccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccc
Confidence 899999999999988754 3333333333222111 122344455566778888885 444454555 4555666555
Q ss_pred ceeEEeecCCcceEEEeecccCCccEEEEEEc-CCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCc
Q 001396 470 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 548 (1086)
Q Consensus 470 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 548 (1086)
.. ..+..+........++ +++..++..+. .+...+|......................|+|||+.|+..+.. .+.
T Consensus 162 ~~-~~~~~~~~~~~~~~~s--pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~ 237 (269)
T d2hqsa1 162 AP-QRITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMG 237 (269)
T ss_dssp CC-EECCCSSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTE
T ss_pred cc-eeeecccccccccccc--cccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCC
Confidence 43 3333455555556664 46666666544 4555555555444444444555667788999999999877643 346
Q ss_pred eeEEEEeCCCCeeeeEEecccccCCceEEEEEec
Q 001396 549 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 582 (1086)
Q Consensus 549 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 582 (1086)
..|+++++..+... .+.... +.+...+|+|
T Consensus 238 ~~l~~~~~dg~~~~-~lt~~~---g~~~~p~WSP 267 (269)
T d2hqsa1 238 SVLNLVSTDGRFKA-RLPATD---GQVKFPAWSP 267 (269)
T ss_dssp EEEEEEETTSCCEE-ECCCSS---SEEEEEEECC
T ss_pred cEEEEEECCCCCEE-EEeCCC---CcEEeEEeCC
Confidence 78999999877654 344334 6778888988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=7.5e-08 Score=98.14 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=154.2
Q ss_pred CCCCeeEEEeecCCCEEEEEe--CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001396 795 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 872 (1086)
Q Consensus 795 ~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 872 (1086)
+......++++++|...++.. .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 344567999999999776654 36677666554333222222234567899999 888888777777777776555554
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-EeCC
Q 001396 873 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 951 (1086)
Q Consensus 873 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~ 951 (1086)
+....+ .....++++.++++++++-.....+..++...... ......+. .....++++++|+++++ ..++
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence 443332 34578999999999888776677777777665331 11111221 13578999999998777 4667
Q ss_pred eEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccceEEE
Q 001396 952 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1031 (1086)
Q Consensus 952 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1086)
.|..++........ +..........+++.++|.++++....+.|..++....... .+. . ..-..|..++
T Consensus 162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i~ 230 (260)
T d1rwia_ 162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAVA 230 (260)
T ss_dssp EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEEE
T ss_pred cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEEE
Confidence 89999977544332 23344566789999999998888877888888876554322 111 0 1123567899
Q ss_pred ECCCCCCEEEEEeCCCcEEEEccC
Q 001396 1032 AHPLKPTQFAVGLTNGEVYVIEPN 1055 (1086)
Q Consensus 1032 ~~p~~~~~l~~~~~dg~v~vw~~~ 1055 (1086)
+++ +++++++-..+++|...+..
T Consensus 231 ~d~-~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 231 VDS-DRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp ECT-TCCEEEEEGGGTEEEEECCC
T ss_pred EeC-CCCEEEEECCCCEEEEEeCC
Confidence 998 67777766666766655543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=5.3e-08 Score=99.30 Aligned_cols=238 Identities=9% Similarity=-0.026 Sum_probs=148.9
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
....++++++|+.+++..+..+.+..++..+...... ..+-......++++++|.++++..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d~ 75 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF 75 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEeee
Confidence 4589999999985444445557777776654432211 111123456789999999888777
Q ss_pred CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc
Q 001396 410 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 489 (1086)
Q Consensus 410 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 489 (1086)
..+.+++++-.++..+. .. .......++++.++++ ++++-.....+..++............-......+++.
T Consensus 76 ~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~- 148 (260)
T d1rwia_ 76 NNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD- 148 (260)
T ss_dssp TTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC-
T ss_pred eeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeec-
Confidence 77777766655443222 11 2234578999999998 66666667778888755443222111222345677774
Q ss_pred cCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001396 490 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 569 (1086)
Q Consensus 490 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 569 (1086)
+++.++++...++.|..++.+.................++++++|+++++... .+.|..++...... ..+....
T Consensus 149 -~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~~ 222 (260)
T d1rwia_ 149 -NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFTG 222 (260)
T ss_dssp -TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCCS
T ss_pred -CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccCC
Confidence 46678888888899999987765544433344456789999999988777643 55688887654432 2222111
Q ss_pred ccCCceEEEEEecCCCEEEEEECCCcEEEEEc
Q 001396 570 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 601 (1086)
Q Consensus 570 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 601 (1086)
......++++++|+.+++-..++.|+.++.
T Consensus 223 --~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 223 --LNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp --CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred --CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 245678999999887666566666665544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.93 E-value=4.5e-07 Score=94.78 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=155.9
Q ss_pred CceEeeecCCCceEEEEEec-------cCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCC
Q 001396 330 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 402 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 402 (1086)
....++|.|+|+ ++++... +|+|..||..++.......- ...........++|.++|
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~dg 82 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECSSS
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEeCCC
Confidence 567789999998 4554322 46788999888765432100 011112346789999999
Q ss_pred CEEEEEeCCCEEEEEEecCCCccccceEecccc-ccEeEEEecCCCCcEEEEEEeC---------------CCcEEEEeC
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA 466 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~d~~~l~l~s~~~---------------d~~i~iwd~ 466 (1086)
..|+++...+.|...+.+++..........+.. ...+.+++.++|. +.++-.. +|.|..++.
T Consensus 83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~ 160 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence 988888777778888887653221110111111 1357899999998 5665421 234555553
Q ss_pred CCCceeEEeecCCcceEEEeecccCCc---cEEEEEEcCCeEEEEEcCCCceeE------EecC-CCCceEEEEEecCCC
Q 001396 467 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDA-PGLGCTRMAYSANGR 536 (1086)
Q Consensus 467 ~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~------~~~~-~~~~i~~~~~s~d~~ 536 (1086)
.|+..... ..-..-+.++|++..++ .++++-+..+.|..||+....... .+.. .......+++..+|+
T Consensus 161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 34433332 22334467888775543 244555778889999876544322 1111 122456899999999
Q ss_pred EEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEE-EECCCcEEEEEcC
Q 001396 537 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN 602 (1086)
Q Consensus 537 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~ 602 (1086)
..++... .+.|.+||.++++.+..+.... ....+++|.|+++.|+. .+.+|.|...++.
T Consensus 239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 8776543 5679999999888777776654 57889999999976655 5567888877765
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.92 E-value=2.2e-07 Score=97.29 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=155.8
Q ss_pred CeeEEEeecCCCEEEEEe--------CCeEEEEEccCceEEEEEcCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001396 798 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY 865 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iw 865 (1086)
....++|.+||+++++.. +|+|..||..++......... ...-..++|.+ ++..++++...+.|...
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999887653 356888898887665443322 23457899999 78777777777789999
Q ss_pred EcCCceeEEEecccc----CCeEEEEEeCCCCEEEEEeC---------------CCcEEEEECCCCceeeeeeeeccCCC
Q 001396 866 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV 926 (1086)
Q Consensus 866 d~~~~~~~~~l~~h~----~~v~~l~~spdg~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 926 (1086)
+..++.......... .....+++.++|++.++-.. +|.|..++.+. +.. .......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~-- 172 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ-- 172 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence 987654322111111 13577999999999887432 23344444332 211 1111111
Q ss_pred ccCCCCceEEEEecCCC----EEEE--EeCCeEEEEEcCCcccee------ccccCCccCEEEEEEeCCCCEEEEEECCC
Q 001396 927 MTLAPSETHIQFHKDQT----RFLL--VHETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 994 (1086)
Q Consensus 927 ~~~~~~v~~~~~s~dg~----~l~~--~~d~~i~vwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg 994 (1086)
....++|+|++. .|.+ +..+.|..|++.....+. .+...+......+++..+|.+.++....+
T Consensus 173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 235799999875 4444 356778888875432221 11122234567899999999888887889
Q ss_pred cEEEEEcCCCceeeeeccccccCCCCccCcccceEEEECCCCCC-EEEEEeCCCcEEEEccCCCCC
Q 001396 995 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPGD 1059 (1086)
Q Consensus 995 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~~~~~dg~v~vw~~~~~~~ 1059 (1086)
.|.+||-+.+..+..+... .-.+.+++|.| |++ ++++.+.+|.|...++..++.
T Consensus 248 ~I~~~dp~~g~~~~~i~~p----------~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCP----------FEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp EEEEECTTCBSCSEEEECS----------SSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCBC
T ss_pred EEEEEeCCCCEEEEEEECC----------CCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCCh
Confidence 9999999988877666511 12456799999 665 566667789999888877663
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.92 E-value=1.4e-07 Score=98.56 Aligned_cols=235 Identities=10% Similarity=0.016 Sum_probs=149.1
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-EE
Q 001396 797 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS 874 (1086)
Q Consensus 797 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~ 874 (1086)
..+..++++|||+++++.. +++|..|+.... ...+......+.+++|++ +|+++++...++.+..|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578999999999988876 688888886533 233444567899999999 889999998888888888754321 11
Q ss_pred Ee--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCC--CCceEEEEecCCCEEEE--E
Q 001396 875 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLL--V 948 (1086)
Q Consensus 875 ~l--~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~--~ 948 (1086)
.+ .........+++.++|+++++.+.++.+..++...+.......-.......... .....+.+ ++..+.. .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecC
Confidence 11 124456889999999999999888998888888875432211111001000001 12334444 4555554 4
Q ss_pred eCCeEEEEEcCCccceeccc-cCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccccCCCCccCcccc
Q 001396 949 HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1027 (1086)
Q Consensus 949 ~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1027 (1086)
..+.|..++........... ..+......++|.+||.++++...++.|..++.+.. ....... . .....+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~-~-------~~~~~p 253 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQA-E-------QGVIGS 253 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECG-G-------GTCTTE
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEec-C-------CCCCCc
Confidence 66788888876543322211 112344567999999998888888899998876543 2211110 0 111346
Q ss_pred eEEEE---CCCCCCEEEEEeCC
Q 001396 1028 HAIAA---HPLKPTQFAVGLTN 1046 (1086)
Q Consensus 1028 ~~~~~---~p~~~~~l~~~~~d 1046 (1086)
.+++| .| |++.|.+++..
T Consensus 254 t~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTT-TTTEEEEEECT
T ss_pred eEEEEcCCCC-CCCEEEEECCC
Confidence 78999 55 66777666544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.91 E-value=6.2e-07 Score=92.26 Aligned_cols=244 Identities=12% Similarity=0.109 Sum_probs=163.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEecCCCccccceEe---ccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCC
Q 001396 392 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 468 (1086)
Q Consensus 392 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~ 468 (1086)
....++++++|+.+++-..+..|++||.+ |+.+...... .+.......+++..+....+++..+.++.|.+++ ..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-cc
Confidence 46899999999988887778899999966 4433321111 0122234566766665543444455667888888 46
Q ss_pred CceeEEeec-CCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe--cCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 469 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 469 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
|+....+.. .......+++ .+++.++++....+.+.+++.+. +....+ ..+......+++.++++.+++...
T Consensus 102 g~~~~~~~~~~~~~p~~~av--d~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~-- 176 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-- 176 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG--
T ss_pred ccceeecCCCcccccceecc--ccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc--
Confidence 777766632 3345566776 45667777777778888887543 333333 334456788999999987777654
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEEC-CCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
.+.|++||. +|+.+..+.. .........+++.++|+.+++-.. ++.|.+|+. +|+.+..+...........+++
T Consensus 177 --~~~V~~~d~-~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 177 --AHCVKVFNY-EGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 251 (279)
T ss_dssp --GTEEEEEET-TCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred --ccceeeeec-CCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence 567999996 4566666632 212356789999999987666443 457999984 6887777754443345688999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC
Q 001396 625 NKNGTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 625 s~~~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
.++|.+ +++..++.|++|.....
T Consensus 252 ~~dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 252 MDDGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp ETTTEE-EEEETTTEEEEEECSCC
T ss_pred eCCCcE-EEEeCCCeEEEEEeeee
Confidence 999964 55668899999998765
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=8.5e-07 Score=91.17 Aligned_cols=240 Identities=10% Similarity=0.103 Sum_probs=162.5
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCC------CCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCC
Q 001396 798 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS------PTATSLAFNPHDNNVIAIG-MDDSTILIYNARS 869 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~------~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~ 869 (1086)
....++++++|+.+++-. ++.|++||.+ |+.+..+.... .....+++..+.+.++++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 457899999999776654 5889999965 77777664321 2345667666345555543 344577777764
Q ss_pred ceeEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEE-
Q 001396 870 SEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 947 (1086)
Q Consensus 870 ~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 947 (1086)
++....+. ........+++.++|+++++....+.+.+++.+..... .+... .+. .....+++.++|..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~---~~g~~-~~~---~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGCS-KHL---EFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEECT-TTC---SSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee---ccccc-ccc---cccceeeeccceeEEeee
Confidence 56555553 34566789999999999888888888888887652211 11111 111 25778999999988777
Q ss_pred EeCCeEEEEEcCCccceeccc-cCCccCEEEEEEeCCCCEEEEEEC-CCcEEEEEcCCCceeeeeccccccCCCCccCcc
Q 001396 948 VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1025 (1086)
Q Consensus 948 ~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~s~~~-Dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~ 1025 (1086)
...+.|++||.. |+.+.++- .++......+++.++|..+++-.. ++.|.+|+ .+|+.+..+.... ...
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA 244 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence 466889999975 55554432 234556889999999997776543 45799998 4588877765211 112
Q ss_pred cceEEEECCCCCCEEEEEeCCCcEEEEccCCCC
Q 001396 1026 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1058 (1086)
Q Consensus 1026 ~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1058 (1086)
.+..++..| |+. |++++.++.|++|+...-+
T Consensus 245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence 467888998 565 5667789999999885443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=7.8e-07 Score=98.46 Aligned_cols=229 Identities=10% Similarity=0.077 Sum_probs=140.5
Q ss_pred eeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe----
Q 001396 334 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 409 (1086)
Q Consensus 334 ~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 409 (1086)
..|.+++.+ +. -..+|.|.+||+.+++....... ..-....+....|||||++++...
T Consensus 22 ~~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~ 83 (465)
T d1xfda1 22 AKWISDTEF-IY-REQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEP 83 (465)
T ss_dssp CCBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred CEEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEcC----------------ccccccccceeEECCCCCeEEEEEcccc
Confidence 358888874 43 34578999999998875321000 011224567788999999998874
Q ss_pred -----CCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEee-cCCcce-
Q 001396 410 -----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV- 482 (1086)
Q Consensus 410 -----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v- 482 (1086)
..+.+.++|+.++.... +.........+....|||||+. +|-.. ++.|.+.+..++..++... +..+.|
T Consensus 84 ~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~ 159 (465)
T d1xfda1 84 IYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (465)
T ss_dssp CSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred eeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceee
Confidence 35689999999886432 1122233456777999999995 43333 6789999988776654442 222212
Q ss_pred ----------------EEEeecccCCccEEEEEEcC-Ce---------------------------------EEEEEcCC
Q 001396 483 ----------------YSLCPHAKENIHFIFSISVD-GK---------------------------------IKAWLYDS 512 (1086)
Q Consensus 483 ----------------~~~~~~~~~~~~~l~s~s~d-g~---------------------------------i~vwd~~~ 512 (1086)
.++.| ++||++|+....| .. +.++|+..
T Consensus 160 nG~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~ 237 (465)
T d1xfda1 160 NGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (465)
T ss_dssp EEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred ccccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCC
Confidence 23344 6688888876532 22 34445444
Q ss_pred CceeEEecCC------CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCce----EEEEEec
Q 001396 513 LGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDT 582 (1086)
Q Consensus 513 ~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----~~~~~~~ 582 (1086)
+......... ..-+..+.|+++++.++....-......+.++|..+|+....+.... ...| ....|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~--~~wv~~~~~~p~~~~ 315 (465)
T d1xfda1 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSK 315 (465)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECT
T ss_pred CcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC--CceEeccCCceeEcc
Confidence 3332221111 11356789999998776655433345678999999998776655433 1222 3457899
Q ss_pred CCCEEE
Q 001396 583 AKDQIL 588 (1086)
Q Consensus 583 ~~~~l~ 588 (1086)
+|+.++
T Consensus 316 dg~~~~ 321 (465)
T d1xfda1 316 DGRKFF 321 (465)
T ss_dssp TSCSEE
T ss_pred CCCeeE
Confidence 988543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=1.6e-06 Score=90.82 Aligned_cols=242 Identities=9% Similarity=0.098 Sum_probs=154.7
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcee
Q 001396 798 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV 872 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~ 872 (1086)
.+..++|.++|++.++-. ++.|..|+..+++....+.........+++++ +|+++++...+ +.+...+..++..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence 456899999998666543 68899999888776666666667789999999 88888765432 3455556665544
Q ss_pred EEEecc--ccCCeEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 873 ISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 873 ~~~l~~--h~~~v~~l~~spdg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
...... -......+++.++|++.++.... +.+..++.+...... ..... .....++|+||++.
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~-------~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKV 190 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeecc-------ceeeeeeeccccce
Confidence 433322 12347789999999988775332 234444444322111 11111 12467999999997
Q ss_pred EEE--EeCCeEEEEEcCCc-cceec------cccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccccc
Q 001396 945 FLL--VHETHLAIYEAEEL-TCLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1015 (1086)
Q Consensus 945 l~~--~~d~~i~vwd~~~~-~~~~~------~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~~~ 1015 (1086)
|.+ ...+.|..|++... ..... ...........+++.++|.+.++....+.|.+|| ..|+.+.++.....
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCc
Confidence 765 35788999987632 11111 0111123467899999999888888899999999 57999888863321
Q ss_pred cCCCCccCcccceEEEECCCCCCEEEEEeCC------CcEEEEccC
Q 001396 1016 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN------GEVYVIEPN 1055 (1086)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d------g~v~vw~~~ 1055 (1086)
-+ .....+.+++|.| +.+.+++...+ |.|+..+..
T Consensus 270 ~~----~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 270 DE----GHMLRSTHPQFIP-GTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp GG----TCSCBCCEEEECT-TSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CC----CcCceeeeEEEeC-CCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 11 2234566899998 45555554432 445555543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.67 E-value=1.5e-05 Score=83.12 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=147.3
Q ss_pred CceEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 409 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 409 (1086)
.+..++|.++|+ |.++-...+.|..||..+++.... ..........++|++||+++++..
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~~ 100 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCYL 100 (319)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEEC
T ss_pred CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEEec
Confidence 457899999997 788877889999999887754432 223445688999999999887764
Q ss_pred CC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEeecCC
Q 001396 410 SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG 479 (1086)
Q Consensus 410 ~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~ 479 (1086)
.+ +.+...+..++.... ...-..-......+++.++|+ +.++... .+.+..++.. ++.+..+...-
T Consensus 101 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~ 176 (319)
T d2dg1a1 101 GDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNI 176 (319)
T ss_dssp TTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEE
T ss_pred CCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEeecc
Confidence 32 334444544443222 111011233578899999998 5555432 2235555543 33333333333
Q ss_pred cceEEEeecccCCccEE-EEEEcCCeEEEEEcCCCceeE--------EecCCCCceEEEEEecCCCEEEEEeeCCCCcee
Q 001396 480 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARV--------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 550 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 550 (1086)
...+.++|++ +++.| ++-+..+.|..|+++...... ...........+++.++|++.++... .+.
T Consensus 177 ~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g~ 250 (319)
T d2dg1a1 177 SVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGR 250 (319)
T ss_dssp SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTE
T ss_pred ceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CCE
Confidence 4456788854 55544 566778999999986543211 11122234678999999997777653 668
Q ss_pred EEEEeCCCCeeeeEEeccc---ccCCceEEEEEecCCCEEEEEEC
Q 001396 551 LVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD 592 (1086)
Q Consensus 551 i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~ 592 (1086)
|.++|. .|+.+..+.... .+...+.+++|.+++..+++...
T Consensus 251 V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 251 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 999995 688887776432 11235789999998887777553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.62 E-value=2.1e-06 Score=88.41 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=129.1
Q ss_pred eeecCC--CceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeC-
Q 001396 334 MDFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 410 (1086)
Q Consensus 334 ~~~spd--g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 410 (1086)
...||| |++++.+. +|.|.+.|+.+|+... +..+.+.+...+|||||++||....
T Consensus 4 ~~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~ 61 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMR 61 (281)
T ss_dssp CCEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEE
T ss_pred cccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEee
Confidence 356899 99765553 3678888999887653 5567788899999999999997642
Q ss_pred C-----CEEEEEEecCCCccccce---EeccccccEeEEEecCCCCcEEEEEEeC------CCcEEEEeCCCCceeEEee
Q 001396 411 K-----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFE 476 (1086)
Q Consensus 411 d-----~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~v~~s~d~~~l~l~s~~~------d~~i~iwd~~~~~~~~~~~ 476 (1086)
+ ..|.+++..+++..+... ............+|+|||+ .++.... ...+...+...+.....
T Consensus 62 ~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (281)
T d1k32a2 62 GSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPL-- 137 (281)
T ss_dssp STTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEEC--
T ss_pred CCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEe--
Confidence 1 247777877776433110 0012223456789999999 4444321 12344555444433221
Q ss_pred cCCcceEEEeecccCCccEEEEEEcCC-----------eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 477 GHGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 477 ~h~~~v~~~~~~~~~~~~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
+........+ ..++..++....+. ........... ...............++++ .++... +.
T Consensus 138 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~-~~ 210 (281)
T d1k32a2 138 -NLGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGH--RIYFIT-DI 210 (281)
T ss_dssp -CSCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETT--EEEEEE-CT
T ss_pred -cCCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceeeeecc--ccceec-cc
Confidence 1111111111 11222232222111 11111111111 1122222233344455554 333333 23
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
.+...|+++|+.+++..+.... . ......|+|||+.|+.. .++.|+++|+.+++....
T Consensus 211 ~~~~~l~~~d~~g~~~~~lt~~-~----~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 211 DGFGQIYSTDLDGKDLRKHTSF-T----DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp TSSCEEEEEETTSCSCEECCCC-C----SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred ccccceEEEeCCCCceEEeecC-C----CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 4567799999987765433222 2 22234689999998764 467899999988875543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.34 E-value=0.0002 Score=73.25 Aligned_cols=216 Identities=9% Similarity=0.006 Sum_probs=142.9
Q ss_pred EEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe
Q 001396 440 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 440 ~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 519 (1086)
...|.+..+. ++.+--..+.|..||.++++.. .+. ....+.++++. .++.+++ ++.+ .+..+|..+++.....
T Consensus 22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~v-a~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLI-ASDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEE-EETT-EEEEEETTTCCEEEEE
T ss_pred CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEE-EEeC-ccEEeecccceeeEEe
Confidence 4568776554 3444446788999998888643 332 34567777764 4555555 4554 5888998887765543
Q ss_pred cCC----CCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEE-ECCC
Q 001396 520 DAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH 594 (1086)
Q Consensus 520 ~~~----~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg 594 (1086)
... ...+..+.+.|+|++.++..........-.+|....++........ ...+.++|+++++.++.+ +..+
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence 322 2367889999999987765543322333455666667665555443 356889999999877654 5678
Q ss_pred cEEEEEcCC------CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEc
Q 001396 595 VIKIWDMNK------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN 667 (1086)
Q Consensus 595 ~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 667 (1086)
.|+.++++. ++........+.......+++..+|++.++....+.|..|+. .++.+..+......+++++|.
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 899888753 122222222222234578999999998888778889999995 577888887776778888886
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.28 E-value=0.00027 Score=72.24 Aligned_cols=223 Identities=14% Similarity=0.068 Sum_probs=147.4
Q ss_pred eEeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC
Q 001396 332 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 411 (1086)
Q Consensus 332 ~~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 411 (1086)
....|++.+..|..+--..+.|.-||..+++... |. ....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEEE-eC
Confidence 4567887555567776677899999999886432 11 23568899999999877754 55
Q ss_pred CEEEEEEecCCCccccceEecc--ccccEeEEEecCCCCcEEEEEEeC----CCcEEEEeCCCCceeEEeecCCcceEEE
Q 001396 412 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL 485 (1086)
Q Consensus 412 ~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~d~~~l~l~s~~~----d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 485 (1086)
| +.++|..+++... +..... ....++++.+.|+|+ +.++... .+.-.+|.+..++....+.. -...+.+
T Consensus 79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~ 153 (295)
T d2ghsa1 79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI 153 (295)
T ss_dssp E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence 4 9999999886322 111111 223688999999998 4444322 23456676667765444432 2345667
Q ss_pred eecccCCcc-EEEEEEcCCeEEEEEcCCCc------ee--EEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeC
Q 001396 486 CPHAKENIH-FIFSISVDGKIKAWLYDSLG------AR--VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 556 (1086)
Q Consensus 486 ~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~------~~--~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 556 (1086)
++++ ++. ++++-+..+.|..++++... .. .......+....+++..+|++.++... .+.|..||.
T Consensus 154 ~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp 227 (295)
T d2ghsa1 154 CFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT 227 (295)
T ss_dssp EECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred eecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence 7754 444 55666778899999875422 11 122344556789999999987776543 457999995
Q ss_pred CCCeeeeEEecccccCCceEEEEEe-cCCCEEEEEE
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG 591 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 591 (1086)
.|+.+..+.... ..+++++|. ++.+.|+..+
T Consensus 228 -~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 -DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp -TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred -CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence 688888887765 578999996 6777776644
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.28 E-value=1.4e-05 Score=81.85 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=129.2
Q ss_pred CCCCccccccccccCCCccCCCccceeeeeccCCCCceEeeecCCCceEEEEEeccC-----cEEEEecCCCceeeeeee
Q 001396 295 SPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG-----DTGLWDVNSGQKLFIRNF 369 (1086)
Q Consensus 295 sP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~lla~gs~dg-----~v~iwd~~~~~~~~~~~~ 369 (1086)
||.-+-.+..|......|+.++.....+.|..+.+.+...+|||||++|+.+...++ .|.+++..+++.......
T Consensus 7 sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~ 86 (281)
T d1k32a2 7 NPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF 86 (281)
T ss_dssp EEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred CCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec
Confidence 455222244566666677778887777888888888999999999998655554332 477888887765531000
Q ss_pred eeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCC------CEEEEEEecCCCccccceEeccccccEeEEEe
Q 001396 370 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 443 (1086)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 443 (1086)
..............+|+|||+.|+..... ..+...+..++... ..+....... +
T Consensus 87 -------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~ 146 (281)
T d1k32a2 87 -------------SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATHI-L 146 (281)
T ss_dssp -------------CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSEE-E
T ss_pred -------------CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCcccee-e
Confidence 00011233456788999999999986432 23555565554321 1223333333 4
Q ss_pred cCCCCcEEEEEEeCCC-----------cEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEEEcC--CeEEEEEc
Q 001396 444 SAPCKQISVITCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLY 510 (1086)
Q Consensus 444 s~d~~~l~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~ 510 (1086)
.+++.. .++....+. ...+.....+...... .+........+ .++ ..+.....+ ..|.++|+
T Consensus 147 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~ 221 (281)
T d1k32a2 147 FADGRR-VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDL 221 (281)
T ss_dssp EETTEE-EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEET
T ss_pred ecCCCe-EEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeee--ecc-ccceecccccccceEEEeC
Confidence 444443 333332221 1111121122211111 22222222222 222 233333333 34667777
Q ss_pred CCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001396 511 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 564 (1086)
Q Consensus 511 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 564 (1086)
+.............. ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 222 ~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 222 DGKDLRKHTSFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp TSCSCEECCCCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred CCCceEEeecCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 766655433322222 346899999988754 44699999998876543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=0.0078 Score=59.47 Aligned_cols=240 Identities=11% Similarity=-0.000 Sum_probs=150.9
Q ss_pred CEEEEEeCCCEEEEEEecCCCccc--cceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCc
Q 001396 403 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 480 (1086)
Q Consensus 403 ~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 480 (1086)
.+|+.+.. +.|+-.+++...... ....+..+...+..++|.+.++. ++.+-..++.|+..++..+.....+.....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 45555533 457777776543221 11223445556888999988775 445556678899989876655544544445
Q ss_pred ceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001396 481 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 560 (1086)
Q Consensus 481 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 560 (1086)
.+..+++.+. .+.+.++-...+.|.+.+++.................++++|...+++...... ....|..-++....
T Consensus 80 ~p~~iAvD~~-~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred cccEEEEecc-CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCCC
Confidence 6788888543 333445556778999999987666555544446788999999888877654321 23346656665444
Q ss_pred eeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCC
Q 001396 561 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANEN 638 (1086)
Q Consensus 561 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg 638 (1086)
........ ......+++.+.++.|+.+. ..+.|...++........+.... ....+++. +..|+.. ...+
T Consensus 158 ~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~ 229 (263)
T d1npea_ 158 RRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTN 229 (263)
T ss_dssp CEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTT
T ss_pred ceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCC
Confidence 33333222 24678999998888887764 67789999987665544443322 23567775 4455544 4567
Q ss_pred cEEEEECCCCCeeeec
Q 001396 639 RIKILETPESNSVDAA 654 (1086)
Q Consensus 639 ~i~iw~~~~~~~~~~~ 654 (1086)
.|...+..+++.....
T Consensus 230 ~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 230 SVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCccceEE
Confidence 8888888877665444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.0097 Score=58.93 Aligned_cols=239 Identities=9% Similarity=-0.047 Sum_probs=145.4
Q ss_pred EEEEEeCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCc----eeEEeecCC
Q 001396 404 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG 479 (1086)
Q Consensus 404 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~ 479 (1086)
+|+.+... .|+..++.+.+.. .+......+.+++|.+..+. ++.+-...+.|.--++.... ....+....
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 34444433 4888888765432 22234556789999988875 34444556777776664321 112222233
Q ss_pred cceEEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001396 480 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 559 (1086)
Q Consensus 480 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 559 (1086)
..+..+++.+. .+.+.++-...+.|.+.+++.................++++|...+|...... ....|...++...
T Consensus 77 ~~p~glAvD~~-~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceEEEeec-cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence 45667777544 33455555677899999998877666666666678899999977777655422 2446777777654
Q ss_pred eeeeEEecccccCCceEEEEEecCCCEEEEE-ECCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001396 560 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 637 (1086)
Q Consensus 560 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~d 637 (1086)
.........- .....+++.+.++.|+.+ ...+.|...++....................+++. +..|... ..+
T Consensus 154 ~~~~l~~~~~---~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~ 228 (266)
T d1ijqa1 154 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 228 (266)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceeccccccc---ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCC
Confidence 4433332222 567899999988888776 45678998898765544444333332334566666 3445544 456
Q ss_pred CcEEEEECCCCCeeeeccc
Q 001396 638 NRIKILETPESNSVDAAGV 656 (1086)
Q Consensus 638 g~i~iw~~~~~~~~~~~~~ 656 (1086)
+.|...+..++.....+..
T Consensus 229 ~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 229 EAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp TEEEEEETTTCCCCEEEEC
T ss_pred CeEEEEECCCCcceEEEEc
Confidence 7888878777765554443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.91 E-value=0.0009 Score=71.62 Aligned_cols=285 Identities=9% Similarity=-0.031 Sum_probs=144.6
Q ss_pred CceEeeecCCCceEEEEEecc-----C------cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 398 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~d-----g------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 398 (1086)
.+...+...+|+ +++.|+.+ + .+.+||..+++-..... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 344455567887 56666642 1 36789988876432100 12233334456788
Q ss_pred CCCCCEEEEEeCC-CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCC------CcEEEEeCCCCce
Q 001396 399 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR 471 (1086)
Q Consensus 399 spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d------~~i~iwd~~~~~~ 471 (1086)
.+||++++.|+.+ ..+.+||..+..-.. ...+.. ...-..++..+||+ +++.|+.+ ..+.+||..+.+-
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998655 579999998865322 111111 11234567788998 67777643 3689999887653
Q ss_pred eEEeec---------CCcce----EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC--C------CCceEEEE
Q 001396 472 TYSFEG---------HGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P------GLGCTRMA 530 (1086)
Q Consensus 472 ~~~~~~---------h~~~v----~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~------~~~i~~~~ 530 (1086)
...-.. +...+ ....+ ...++..++.++..+.+.+++..+......... . ...-.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 221000 00000 00001 122455666666666666666555433221100 0 00112233
Q ss_pred E-ecCCCEEEEEeeCCCC----ceeEEEEeCCC---CeeeeEEecccccCCceEEEEEecCCCEEEEEECC---------
Q 001396 531 Y-SANGRRLFSCGTSKEG----ESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------- 593 (1086)
Q Consensus 531 ~-s~d~~~l~~~~~~~~~----~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------- 593 (1086)
+ ..+++.++.++..... .....+.+... ................-.+....++++.++.|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 3 3466777776643211 11223333221 11111111100001223345566888888887732
Q ss_pred --CcEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001396 594 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 636 (1086)
Q Consensus 594 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 636 (1086)
.++.+||..+.+-...-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478999988765433222211111123446789999999874
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.89 E-value=0.0064 Score=67.90 Aligned_cols=199 Identities=12% Similarity=0.035 Sum_probs=118.4
Q ss_pred EEEEEeCCCcEEEEeCC-CCceeEEeecCCc----ce-------EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEE
Q 001396 451 SVITCGDDKTIKVWDAV-TGSRTYSFEGHGA----PV-------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 518 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~----~v-------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 518 (1086)
++++.+.++.|...|.. +|+.+.++..... .. ..+++. +..++.++.||.+.-.|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 33433346788888874 7998887642111 00 122321 23688889999999999999988765
Q ss_pred ecCCCC----ceEEEEEecCCCEEEEEee-CCCCceeEEEEeCCCCeeeeEEeccccc----------------------
Q 001396 519 YDAPGL----GCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQ---------------------- 571 (1086)
Q Consensus 519 ~~~~~~----~i~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 571 (1086)
...... .+++.-.-.++..++..+. .....+.|+-+|..+|+.+-.+......
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 543221 1221112234444443321 1123678999999999998776532100
Q ss_pred ------------CCce-EEEEEecCCCEEEEEEC----------------CCcEEEEEcCCCeeEEEEcCCCCC------
Q 001396 572 ------------HNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL------ 616 (1086)
Q Consensus 572 ------------~~~v-~~~~~~~~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~------ 616 (1086)
...+ ...++.++...++.+.. ...+.-.|.++|+.+..++...+.
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence 0111 23466777777766543 345788899999998877643221
Q ss_pred -CCCceEEEecCCC---EEEEEECCCcEEEEECCCCCeeee
Q 001396 617 -PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA 653 (1086)
Q Consensus 617 -~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~ 653 (1086)
..........+++ .++.++.+|.+.++|..+++.+..
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 1112222333454 467788899999999999988754
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.88 E-value=0.0042 Score=69.67 Aligned_cols=382 Identities=12% Similarity=0.089 Sum_probs=193.5
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCc----------ce-EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEe
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 519 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 519 (1086)
.++.++.++.|.-+|.++|+.+.++..... .+ ..+.+. ...++.++.|+.+.-.|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE----CCcEEEEecccceeeeccccccceecc
Confidence 355667788899999999999887642110 01 111221 236778888999998999998887655
Q ss_pred cCCCC---ce--EEEEEecCCCEEEEEeeC--CCCceeEEEEeCCCCeeeeEEeccccc---------------------
Q 001396 520 DAPGL---GC--TRMAYSANGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQLQ--------------------- 571 (1086)
Q Consensus 520 ~~~~~---~i--~~~~~s~d~~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~~--------------------- 571 (1086)
..... .+ +..-.-.++ .++.+... ....+.|+-+|..+|+.+-.+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 43211 11 111111233 34443321 223568999999999988776432100
Q ss_pred -------CCce-EEEEEecCCCEEEEEEC-------------------CCcEEEEEcCCCeeEEEEcCCCCC-------C
Q 001396 572 -------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------P 617 (1086)
Q Consensus 572 -------~~~v-~~~~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~ 617 (1086)
...+ ....+.++...++.+.. ...|.-.|.++++.....+...+. .
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 0111 23456676666665331 124677788888887666532211 1
Q ss_pred CCceEEEecCC---CEEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccccCCeeeecCCCCCCccc
Q 001396 618 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 694 (1086)
Q Consensus 618 ~v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~s~d~~~ 694 (1086)
.........++ ..++.++.+|.+.++|..+++.+........... ..+.. .+..
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~-~~~~~----------------------~~~~ 370 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-SGYDK----------------------HGKP 370 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-EEECT----------------------TSCE
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccc-ccccc----------------------ccce
Confidence 11122223333 3567788899999999999988765542211100 00000 0000
Q ss_pred ceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeeccCCccccCcccccccCC
Q 001396 695 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 774 (1086)
Q Consensus 695 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 774 (1086)
+..... ..........+.......-...+++|+...++....+....++.............
T Consensus 371 ~~~~~~------------~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~------ 432 (573)
T d1kb0a2 371 IGIAAA------------RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG------ 432 (573)
T ss_dssp EECGGG------------GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT------
T ss_pred eeeeec------------cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCC------
Confidence 000000 00000000111100111112357888888887777765554443322111000000
Q ss_pred ceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEE
Q 001396 775 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 854 (1086)
Q Consensus 775 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 854 (1086)
....+ ...... .+ +++.-.....-|.+.-||+.+++.+.+........ .=..+- .+.+|+
T Consensus 433 ---~~~~g------------~~~~~~--~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~-gg~lst-agglVF 492 (573)
T d1kb0a2 433 ---KPQSG------------TGWNTA--KF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN-GGTLTT-AGNVVF 492 (573)
T ss_dssp ---STTGG------------GTCCCC--EE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEE-TTTEEE
T ss_pred ---ccccc------------cccccc--cc-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCC-CceEEE-cCCEEE
Confidence 00000 000000 00 00000000012678889999999988776432211 111222 455888
Q ss_pred EEeCCCeEEEEEcCCceeEEEeccccCCe-EEEEEeCCCC-EEEEE
Q 001396 855 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSS 898 (1086)
Q Consensus 855 sg~~dg~v~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~-~l~s~ 898 (1086)
+|+.||.++.+|..+|+.+.++.--.+.. .-+.|..||+ |++..
T Consensus 493 ~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 493 QGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA 538 (573)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 89999999999999999998876322111 1145566886 44443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.86 E-value=0.0081 Score=66.96 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=53.0
Q ss_pred CeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCCC-E
Q 001396 817 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-I 894 (1086)
Q Consensus 817 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~-~ 894 (1086)
|.+.-||+.+++.+.+..... +...-.++- .+.++++|+.||.++-+|..+|+.+.+++-..+. -.-+.+..||+ |
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 467889999999988765322 111112222 3458888999999999999999999887632211 11255666885 5
Q ss_pred EEEEe
Q 001396 895 LVSSG 899 (1086)
Q Consensus 895 l~s~s 899 (1086)
++..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.83 E-value=0.019 Score=56.63 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=140.7
Q ss_pred CCccEEEEEECCCCCEEEEE-eCCCEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCC
Q 001396 389 PGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 467 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~ 467 (1086)
+...+.+++|.+..+.|... ..++.|+..++.++.... .+......+..+++..-++. +.++-...+.|.+.++.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence 44568889999887777766 456788888887664322 22233356888999876664 44555667899999987
Q ss_pred CCceeEEeecCCcceEEEeecccCCccEEEEEEcCCe--EEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCC
Q 001396 468 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 545 (1086)
Q Consensus 468 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 545 (1086)
.......+.........+++.|. .+.++.+-...+. |..-+++...........-.....+++.+.++.|+.+..
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~-- 186 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-- 186 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred CceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence 65543333333466788888654 3334444333233 444455554444444444456789999998888877642
Q ss_pred CCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcCCCCCCCCceEEE
Q 001396 546 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 624 (1086)
Q Consensus 546 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 624 (1086)
+.+.|...|+........+.+.. ...++++. +.+|+... ..+.|...|..+++.+..+..... .....+++
T Consensus 187 -~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v 258 (263)
T d1npea_ 187 -GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI 258 (263)
T ss_dssp -TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred -CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence 25678889987665544454433 34567765 45666554 678899999999988877643332 23445655
Q ss_pred ec
Q 001396 625 NK 626 (1086)
Q Consensus 625 s~ 626 (1086)
.+
T Consensus 259 ~~ 260 (263)
T d1npea_ 259 AL 260 (263)
T ss_dssp EC
T ss_pred eC
Confidence 44
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.82 E-value=0.0077 Score=67.14 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=119.4
Q ss_pred CeEEEEEccCceEEEEEcCCC------------------------------CCe-EEEEEcCCCCCEEEEEeC-------
Q 001396 817 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD------- 858 (1086)
Q Consensus 817 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~d~~~lasg~~------- 858 (1086)
|.|.-+|..+|+.+.++..-. ..+ ..+++.+ ...++..+..
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~ 256 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR 256 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence 679999999999998875211 011 2356666 4555554321
Q ss_pred ------------CCeEEEEEcCCceeEEEeccccCCeE---------EEEEeCCC---CEEEEEeCCCcEEEEECCCCce
Q 001396 859 ------------DSTILIYNARSSEVISKLEGHSKRVT---------GLVFSDAL---NILVSSGGDAQIFVWDVDGWGI 914 (1086)
Q Consensus 859 ------------dg~v~iwd~~~~~~~~~l~~h~~~v~---------~l~~spdg---~~l~s~s~dg~i~iwd~~~~~~ 914 (1086)
...|.-.|+.+|+.+..++.....+. -+.+..++ +.++.++.+|.+.++|-.+++.
T Consensus 257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~ 336 (560)
T d1kv9a2 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (560)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence 23677789999998776654222221 12223344 3677788999999999998875
Q ss_pred eeeeeeecc---------CC--------C---------ccCC--CCceEEEEecCCCEEEE-Ee----------------
Q 001396 915 QTCRSLQTP---------DG--------V---------MTLA--PSETHIQFHKDQTRFLL-VH---------------- 949 (1086)
Q Consensus 915 ~~~~~~~~~---------~~--------~---------~~~~--~~v~~~~~s~dg~~l~~-~~---------------- 949 (1086)
......... .+ . .... ..-...+++|+..++.+ ..
T Consensus 337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~ 416 (560)
T d1kv9a2 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (560)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence 432111000 00 0 0000 01135778888887776 21
Q ss_pred --------------------CCeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeee
Q 001396 950 --------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1009 (1086)
Q Consensus 950 --------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~ 1009 (1086)
.+.+.-||+.+|+.+-+...+ .+..+-.++-.|.++++++.||.++-+|.++|+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~ 494 (560)
T d1kv9a2 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (560)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence 145778899888877553322 2222223455677888899999999999999999999
Q ss_pred eccc
Q 001396 1010 ILST 1013 (1086)
Q Consensus 1010 ~~~~ 1013 (1086)
+...
T Consensus 495 ~~l~ 498 (560)
T d1kv9a2 495 FEAQ 498 (560)
T ss_dssp EECS
T ss_pred EECC
Confidence 8843
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.81 E-value=0.01 Score=66.49 Aligned_cols=203 Identities=11% Similarity=0.034 Sum_probs=119.3
Q ss_pred EEEEEeCCCcEEEEeC-CCCceeEEeecCCc----------c-eEEEeeccc--CCccEEEEEEcCCeEEEEEcCCCcee
Q 001396 451 SVITCGDDKTIKVWDA-VTGSRTYSFEGHGA----------P-VYSLCPHAK--ENIHFIFSISVDGKIKAWLYDSLGAR 516 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~----------~-v~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~ 516 (1086)
++++.+.++.+...|. ++|+.+.++..... . -+.+++... ....+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3444454566777776 57888877642110 0 122343322 12347889999999999999999988
Q ss_pred EEecCCCC----ceEEEEEecCCCEEEEEeeC--CCCceeEEEEeCCCCeeeeEEecccc--------------------
Q 001396 517 VDYDAPGL----GCTRMAYSANGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQL-------------------- 570 (1086)
Q Consensus 517 ~~~~~~~~----~i~~~~~s~d~~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 570 (1086)
..+..... .+++--.--++ .++.+... ....+.|+-+|..+|+.+-++.....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~ 223 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK 223 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred ccccccccccccccccCCcEECC-eEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence 87643221 11111111233 34444321 12357899999999999877643210
Q ss_pred --------------cCC-ceEEEEEecCCCEEEEEECC----------------CcEEEEEcCCCeeEEEEcCCCCC---
Q 001396 571 --------------QHN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 616 (1086)
Q Consensus 571 --------------~~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 616 (1086)
... .-..+.+.+....++.+..+ ..|.-.|+++|+....++...+.
T Consensus 224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd 303 (596)
T d1w6sa_ 224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD 303 (596)
T ss_dssp THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence 001 12245667777777776432 34778899999998877543221
Q ss_pred ----CCCceEEE-ecCCC---EEEEEECCCcEEEEECCCCCeeeec
Q 001396 617 ----PENPRICF-NKNGT---LLAVIANENRIKILETPESNSVDAA 654 (1086)
Q Consensus 617 ----~~v~~v~~-s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~ 654 (1086)
.....+.. ..+|+ .++....+|.+.++|..+++.+...
T Consensus 304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence 11111111 23443 5777888999999999999877543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.80 E-value=0.0086 Score=64.47 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=138.5
Q ss_pred CceEeeecCCCceEEEEEeccC----cEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEE
Q 001396 330 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 405 (1086)
Q Consensus 330 ~V~~~~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 405 (1086)
.+..+++||||++++.+-+.+| .+++.|+.+|+.+.. .+ . ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEE
Confidence 3455678999998666655555 599999999987642 11 0 0122468999999988
Q ss_pred EEEeCC----------------CEEEEEEecCCCccccceEecccc--ccEeEEEecCCCCcEEEEEEe-CCCcEEEE--
Q 001396 406 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKVW-- 464 (1086)
Q Consensus 406 as~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~d~~~l~l~s~~-~d~~i~iw-- 464 (1086)
.....+ ..|..|.+.+...-. ...+.... ..+..+..+.|++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257778877754322 11233332 346677889999963333332 23344444
Q ss_pred eCCCCce--------eEEeecCCcceEEEeecccCCccEEEEEE---cCCeEEEEEcCCCce---eEEecCCCCceEEEE
Q 001396 465 DAVTGSR--------TYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMA 530 (1086)
Q Consensus 465 d~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~ 530 (1086)
|+..... ...+.........+.. . ++.+++... .++.|...++..... ...+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4432211 1222222222322221 1 222333322 345666667665432 223333444455445
Q ss_pred EecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEE----CCCcEEEEEcCCCee
Q 001396 531 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 606 (1086)
Q Consensus 531 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 606 (1086)
+...+.+|+.... .++...|++++..++.....+.... +.+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 5556666665543 2457789999999887765544333 5566555556655544322 346788899988754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=0.021 Score=55.22 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=146.9
Q ss_pred EeeecCCCceEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEeCCC
Q 001396 333 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 412 (1086)
Q Consensus 333 ~~~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 412 (1086)
+.-.+|..+ +||.-+ ..++.|+|+++.+.++...+ ..+|..-.|-.+ +.|+..+. .
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~-~~L~lVT~-t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVTD-N 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSS-SEEEEECS-S
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCC-CEEEEEcC-C
Confidence 344568877 677655 46899999999998876443 257777788744 45665544 4
Q ss_pred EEEEEEecCCCccccceEecccc----ccEeEEEecCCCCcEEEEEE------eCCCcEEEEeCCCCceeEEeecCCcce
Q 001396 413 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITC------GDDKTIKVWDAVTGSRTYSFEGHGAPV 482 (1086)
Q Consensus 413 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~v~~s~d~~~l~l~s~------~~d~~i~iwd~~~~~~~~~~~~h~~~v 482 (1086)
.|+=|++++... +...+..|. ..|..-..+++.+++ +++| +-.|.+.+|..+. +.-+.++||.+..
T Consensus 123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F 198 (327)
T d1utca2 123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 198 (327)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEecc-CcCccccceeeee
Confidence 599999965443 222444443 367777889999963 3333 1235688999654 4467788998877
Q ss_pred EEEeecccCCccEEEE-EE---cCCeEEEEEcCCCc---ee-----EEecC----CCCceEEEEEecCCCEEEEEeeCCC
Q 001396 483 YSLCPHAKENIHFIFS-IS---VDGKIKAWLYDSLG---AR-----VDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 546 (1086)
Q Consensus 483 ~~~~~~~~~~~~~l~s-~s---~dg~i~vwd~~~~~---~~-----~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~ 546 (1086)
..+.+........|++ +. ..+.+++-++.... .. ..+.. ...-..++..++.-..+...+.
T Consensus 199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK--- 275 (327)
T d1utca2 199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 275 (327)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec---
Confidence 7776643333233333 22 23678888876532 11 11111 1223457778887777777765
Q ss_pred CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEE
Q 001396 547 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 597 (1086)
Q Consensus 547 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 597 (1086)
.|.+++||+.++.++..-+-.. ..|...+-..+..-+++...+|.|.
T Consensus 276 -~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred -CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence 7789999999999887766554 5666555555555666666666554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.72 E-value=0.024 Score=54.72 Aligned_cols=225 Identities=13% Similarity=0.129 Sum_probs=147.8
Q ss_pred EEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccc
Q 001396 801 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGH 879 (1086)
Q Consensus 801 ~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h 879 (1086)
+.-.+|..+.+|.-...+++++|+++.+.+..+.- ...|.--.|-. .+.|+..+ +..|+-|++... ++...+..|
T Consensus 67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence 55678999999888888999999999999888763 34666666763 45777666 567999999543 466666655
Q ss_pred c----CCeEEEEEeCCCCEEEEEe---C----CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCC----CE
Q 001396 880 S----KRVTGLVFSDALNILVSSG---G----DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----TR 944 (1086)
Q Consensus 880 ~----~~v~~l~~spdg~~l~s~s---~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----~~ 944 (1086)
. ..|..-..++|.++++..| . .|.+.+|.++... -+..+||.. .-..+--+| ..
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~ 211 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST 211 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc------Cccccceee-----eeEEEEcCCCCCCce
Confidence 4 3577788889999987653 2 3678899998743 455666653 122222222 22
Q ss_pred EEE-E----eCCeEEEEEcCCccc---------eeccccC--CccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceee
Q 001396 945 FLL-V----HETHLAIYEAEELTC---------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1008 (1086)
Q Consensus 945 l~~-~----~d~~i~vwd~~~~~~---------~~~~~~~--h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~ 1008 (1086)
|++ + ..+++++.++.+... +...++. -..-..++..|+.-..+...+.-|.|.++|+.++.++.
T Consensus 212 lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 212 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence 333 2 225788998865321 1111111 15566788888887888888899999999999999987
Q ss_pred eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE
Q 001396 1009 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1051 (1086)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~v~v 1051 (1086)
+-+- +.+.+.. -+.+. +..-+++...+|.|.-
T Consensus 292 ~nRI--------s~~~iF~--~a~~~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 292 MNRI--------SGETIFV--TAPHE-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEC--------CSSCEEE--EEEET-TTTEEEEEETTSEEEE
T ss_pred Eeec--------CCCceEE--eccCC-CCceEEEECCCCeEEE
Confidence 7661 1233442 22333 3345555667887754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.68 E-value=0.0059 Score=62.60 Aligned_cols=198 Identities=12% Similarity=0.132 Sum_probs=125.7
Q ss_pred EEEecC---CCCcEEEEEEeCCCcEEEEeCCCCceeEEeec-CCcceEEEeecccCCccEEEEEEcCC------------
Q 001396 440 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------ 503 (1086)
Q Consensus 440 ~v~~s~---d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg------------ 503 (1086)
.++|.. ||++ +++.-..+.+|.+-|+++.++.+.+.. ....+..+.....++..+++.++.+.
T Consensus 89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 455654 7885 566667889999999999998765533 23445666665566667888777633
Q ss_pred ------eEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC-----------CceeEEEE------------
Q 001396 504 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEW------------ 554 (1086)
Q Consensus 504 ------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-----------~~~~i~iw------------ 554 (1086)
.+.++|.++.+......... ....+.+++||+++++.+.+.+ ....+.++
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 36678888777666554333 4567899999999998764321 11223333
Q ss_pred -----------eCCCC---eeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCe------------eE
Q 001396 555 -----------NESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ------------LL 607 (1086)
Q Consensus 555 -----------d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~------------~~ 607 (1086)
|.... ..++.+... .....+.++|||+++++++ -+.++.|+|++.-. ..
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVp----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred CcEEeCCceeecccccCCcceeEEEecC----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 33221 111112211 3456789999999998865 68899999996421 11
Q ss_pred EEEcCCCCCCCCceEEEecCCCEEEEEECCCcEEEEECC
Q 001396 608 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 646 (1086)
Q Consensus 608 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 646 (1086)
...+. + -.-..-+|+..|.-..+..-|..|.-|++.
T Consensus 323 ~e~el--g-lgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 323 AEPEL--G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp ECCBC--C-SCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred eeccc--C-cCccccccCCCceEEEEeeccceEEEEecc
Confidence 11111 1 123567888888655566679999999985
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.63 E-value=0.0022 Score=65.73 Aligned_cols=196 Identities=10% Similarity=0.063 Sum_probs=126.2
Q ss_pred EEEeec---CCCEEEEEe--CCeEEEEEccCceEEEEEcC-CCCCeEEEEEcCC-CCCEEEEEeCCC-------------
Q 001396 801 CFALSK---NDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPH-DNNVIAIGMDDS------------- 860 (1086)
Q Consensus 801 ~l~~s~---dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~-d~~~lasg~~dg------------- 860 (1086)
.+.+.. ||+++.+.. ++.|.+.|+.+.++.+...- ....+..+...++ .-.+++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 344443 899999997 58899999999998765543 3345666665431 445777666532
Q ss_pred -----eEEEEEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEE------------
Q 001396 861 -----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWD------------ 908 (1086)
Q Consensus 861 -----~v~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg---------------~i~iwd------------ 908 (1086)
.+.+.|..+.+...+..- .+....+++++||+++++.+.+. .+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 367789998887766653 23566799999999999876431 123333
Q ss_pred -----------CCCC-ceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE--eCCeEEEEEcCCcccee-------cc
Q 001396 909 -----------VDGW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK-------QW 967 (1086)
Q Consensus 909 -----------~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~-------~~ 967 (1086)
.... .......+.... ....+.++|||++++++ -+.++.|+|++.-.... ..
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred cEEeCCceeecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 2210 000111222222 34579999999999995 57899999997432211 00
Q ss_pred ---ccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCC
Q 001396 968 ---FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1004 (1086)
Q Consensus 968 ---~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~ 1004 (1086)
.....-....-+|..+|.-..|-.-|..|.-|++...
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence 1112445566789888865666668999999998643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.038 Score=54.47 Aligned_cols=241 Identities=9% Similarity=-0.036 Sum_probs=145.8
Q ss_pred eEEEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe-CCCEEEEEEec
Q 001396 342 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH 420 (1086)
Q Consensus 342 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~ 420 (1086)
+||++-. ..|+-.++.+..... +......+.+++|.+..+.|.-.. ..+.|..-++.
T Consensus 3 fLl~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence 3444432 458888887654322 122345678999999888777664 45667766665
Q ss_pred CCCccccce-EeccccccEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecccCCccEEEEE
Q 001396 421 GGSDARQQL-EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 499 (1086)
Q Consensus 421 ~~~~~~~~~-~~~~h~~~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 499 (1086)
......... .+......+..+++.+.++. +.++-...+.|.+.++........+.........+++.+. +|.++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence 432111111 12233345778999877776 4455566789999998766655555555667788888654 34444443
Q ss_pred -EcCCeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccCCceEEE
Q 001396 500 -SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 578 (1086)
Q Consensus 500 -s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 578 (1086)
+..+.|...+++...........-.....+++.+.++.|+.+.. ..+.|...++............. ......++
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~l 214 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSL 214 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEE
T ss_pred cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEE
Confidence 23456777777665555444444456789999999888887643 25678888887654443333322 11335566
Q ss_pred EEecCCCEEEEEE-CCCcEEEEEcCCCeeEEEEcC
Q 001396 579 HFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDA 612 (1086)
Q Consensus 579 ~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~ 612 (1086)
++. +.+|+.+. .++.|+..+..+++....+..
T Consensus 215 av~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 215 AVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 665 34565554 667888888888776665543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.61 E-value=0.012 Score=62.31 Aligned_cols=125 Identities=10% Similarity=0.163 Sum_probs=79.4
Q ss_pred ceEEEEEecCCCEEEEEeeCCC-------CceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECC-CcE
Q 001396 525 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI 596 (1086)
Q Consensus 525 ~i~~~~~s~d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g~i 596 (1086)
++...+...+|+.++.++...+ ....+.+||..+++..........+.......++.+++..++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 3334445567888887774221 12247899999887644322222111334466788999888887654 689
Q ss_pred EEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC------CcEEEEECCCCCe
Q 001396 597 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNS 650 (1086)
Q Consensus 597 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~ 650 (1086)
.+||..+..-...-..... ..-..++..+||++++.++.+ ..+.+||..+.+.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence 9999998776543332222 223567788899999988753 4688999887643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.61 E-value=0.044 Score=61.11 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=44.1
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeeccc
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1013 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~~ 1013 (1086)
|.|.-||..+|+.+-+... ..++.+-.++..|.+++.|+.||.++.+|..+|+.+.++...
T Consensus 453 G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence 5678888888887644322 222222234556778888999999999999999999998743
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.59 E-value=0.096 Score=58.22 Aligned_cols=383 Identities=11% Similarity=0.059 Sum_probs=192.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCC--------cce-EEEeecccCCccEEEEEEcCCeEEEEEcCCCceeEEecC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 521 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 521 (1086)
.++.++.++.|.-.|.++|+.+.++.... ..+ ..+++ .+..++.++.|+.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence 46667788999999999999998764211 001 11222 123688899999999999999887764432
Q ss_pred CCCc----e--EEEEEec--CCCEEEEEeeCC---CCceeEEEEeCCCCeeeeEEeccccc-------------------
Q 001396 522 PGLG----C--TRMAYSA--NGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 571 (1086)
Q Consensus 522 ~~~~----i--~~~~~s~--d~~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 571 (1086)
.... . ..+.+.+ .+..++..+... ...+.|.-+|..+|+.+-++......
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 1110 0 0011111 133333332111 23567889999999887665432100
Q ss_pred ------------------CCce-EEEEEecCCCEEEEEEC------------------------CCcEEEEEcCCCeeEE
Q 001396 572 ------------------HNSV-SVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT 608 (1086)
Q Consensus 572 ------------------~~~v-~~~~~~~~~~~l~~~s~------------------------dg~i~iwd~~~~~~~~ 608 (1086)
...+ ..+++.+....++.+.. ...+.-.|..+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 0111 23567777777776541 2347778889999887
Q ss_pred EEcCCCCCCCC-------ceEEEe-cCCC---EEEEEECCCcEEEEECCCCCeeeeccccccceeeeEEccCCCceeccc
Q 001396 609 TIDAGGGLPEN-------PRICFN-KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 677 (1086)
Q Consensus 609 ~~~~~~~~~~v-------~~v~~s-~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 677 (1086)
.++...+.... ..+.+. .+++ .++..+.++.+.++|..+++.+....................
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------ 379 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------ 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence 77643321111 111121 1333 566677899999999999987765443333222222211000
Q ss_pred cCCeeeecCCCCCCcccceeccccCccceeeeeecCCccccccccCCcccccceEEEEEecCCceEEEeeccceeEEeec
Q 001396 678 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 757 (1086)
Q Consensus 678 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 757 (1086)
.........+ .....+.... +. ....|.......-...+++|+...+.+...+....+|..
T Consensus 380 ---~~~~~~~~~~--~~~~~~~~~~----~~----------~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~ 440 (582)
T d1flga_ 380 ---RPVEREGQRP--PLPEPGQKHG----KA----------VEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE 440 (582)
T ss_dssp ---CEEECTTCSC--CCCCTTCSSC----CC----------EEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred ---cceecccccc--cccccccccc----ce----------EEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence 0000000000 0000000000 00 000011000111123466776666666555533333321
Q ss_pred cCCccccCcccccccCCceecCCCCCceeeecCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCC
Q 001396 758 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS 837 (1086)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~ 837 (1086)
.... ..+ ..........-+-. ....|.+.-+|+.+++.+.+...+.
T Consensus 441 ~~~~------------------~~g------------~~~~~~~~~~~~~~----~~~~G~l~AiD~~TG~i~W~~~~~~ 486 (582)
T d1flga_ 441 EVSY------------------TKG------------SAYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHL 486 (582)
T ss_dssp CCCC------------------CTT------------SCCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESS
T ss_pred cccc------------------ccc------------ccccccCccccccc----cCCCCeEEEEcCCCCcEEeecCCCC
Confidence 1100 000 00000001110000 0013678889999999988776433
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccccCC-eEEEEEeCCCC-EEEEE
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-ILVSS 898 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~-~l~s~ 898 (1086)
. +..-.++. .+.++++|+.||.++-+|..||+.+.+++-.... -.-+.|..||+ |++..
T Consensus 487 p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 487 P-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp C-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred C-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 2 22112233 4568888999999999999999999887632211 11256777885 55443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.18 Score=55.98 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=44.8
Q ss_pred CeEEEEEcCCccceeccccCCccCEEEEEEeCCCCEEEEEECCCcEEEEEcCCCceeeeecc
Q 001396 951 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1012 (1086)
Q Consensus 951 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd~~~~~~~~~~~~ 1012 (1086)
|.+.-+|+.+|+..-+...++ ++.+-..+..|.++++|+.||.++.+|.++|+.+.++..
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 568888888888776544332 222223456777888899999999999999999999883
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.31 E-value=0.036 Score=61.72 Aligned_cols=106 Identities=11% Similarity=-0.064 Sum_probs=63.7
Q ss_pred ceeEEEEeCCCCeeeeEEeccccc-------CCce-EEEEEecCCCEEEEEECCCcEEEEEcCCCeeEEEEcCCCCCCCC
Q 001396 548 ESFLVEWNESEGAIKRTYQGLQLQ-------HNSV-SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 619 (1086)
Q Consensus 548 ~~~i~iwd~~~~~~~~~~~~~~~~-------~~~v-~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 619 (1086)
++.|+-+|.++|+.+-++...... ...+ ..+.+. +..++.++.++.+.-.|..+|+.+.......+...-
T Consensus 86 ~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~ 163 (573)
T d1kb0a2 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS 163 (573)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS
T ss_pred CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccCccCCcce
Confidence 556889999999988776432100 0011 122232 346788889999999999999998766543221111
Q ss_pred ceEEEec--CCCEEEEEEC------CCcEEEEECCCCCeeeecc
Q 001396 620 PRICFNK--NGTLLAVIAN------ENRIKILETPESNSVDAAG 655 (1086)
Q Consensus 620 ~~v~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~ 655 (1086)
..+.-.| -+..+++++. .|.|.-+|..+++.+....
T Consensus 164 ~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 164 LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence 1111111 1334555432 4679999999998887654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.27 E-value=0.015 Score=64.76 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=154.7
Q ss_pred EEEEeccCcEEEEecCCCceeeeeeeeeeeccccceeeeeeeecCCCccEEEEEECCCCCEEEEEe------CCCEEEEE
Q 001396 344 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------SKHIVQLY 417 (1086)
Q Consensus 344 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~i~iw 417 (1086)
+..++.||.+.--|.++|+.+....+ .+.... ......++. .++ .++.+. .+|.|+-+
T Consensus 118 i~~~~~~g~l~alda~tG~~~w~~~~--~~~~~~--------~~~t~~p~v-----~~~-~vivg~~~~~~~~~G~v~a~ 181 (571)
T d2ad6a1 118 IVKKQANGHLLALDAKTGKINWEVEV--CDPKVG--------STLTQAPFV-----AKD-TVLMGCSGAELGVRGAVNAF 181 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEEC--CCGGGT--------CBCCSCCEE-----ETT-EEEEECBCGGGTCCCEEEEE
T ss_pred EEEEeCCCcEEeeehhhhhhhccccc--cccccc--------cceeecCeE-----eCC-eEEEeeccccccccCcEEEE
Confidence 56778889999999999998754321 110000 000111110 123 333333 36789999
Q ss_pred EecCCCccccceEeccc----------------------------------cccE-eEEEecCCCCcEEEEEEeC-----
Q 001396 418 AYHGGSDARQQLEIDAH----------------------------------VGNV-NDLAFSAPCKQISVITCGD----- 457 (1086)
Q Consensus 418 d~~~~~~~~~~~~~~~h----------------------------------~~~v-~~v~~s~d~~~l~l~s~~~----- 457 (1086)
|+.+|+.+-........ .+.+ ...++.++...+++.++..
T Consensus 182 D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~ 261 (571)
T d2ad6a1 182 DLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNE 261 (571)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccc
Confidence 99999865432111000 1112 2346666666323333311
Q ss_pred ---------CCcEEEEeCCCCceeEEeecCCcceEEEe-------ecccCCc---cEEEEEEcCCeEEEEEcCCCceeEE
Q 001396 458 ---------DKTIKVWDAVTGSRTYSFEGHGAPVYSLC-------PHAKENI---HFIFSISVDGKIKAWLYDSLGARVD 518 (1086)
Q Consensus 458 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~ 518 (1086)
...+.-.|+++|+.+..++.+...+.... +....++ ..++.++.+|.+.+.|..+++.+..
T Consensus 262 ~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 262 TMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp GGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 34677889999999887765332222110 0001122 2567888999999999888876643
Q ss_pred ecCCC-------------------------------------C--ceEEEEEecCCCEEEEEeeC---------------
Q 001396 519 YDAPG-------------------------------------L--GCTRMAYSANGRRLFSCGTS--------------- 544 (1086)
Q Consensus 519 ~~~~~-------------------------------------~--~i~~~~~s~d~~~l~~~~~~--------------- 544 (1086)
..... + .-...+++|+...++.....
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~ 421 (571)
T d2ad6a1 342 EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG 421 (571)
T ss_dssp EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred eccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCC
Confidence 21110 0 00136777877776643321
Q ss_pred ------------------CCCceeEEEEeCCCCeeeeEEecccccCCceEEEEEecCCCEEEEEECCCcEEEEEcCCCee
Q 001396 545 ------------------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 606 (1086)
Q Consensus 545 ------------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 606 (1086)
....+.|.-+|+.+|+.+-+..... ...+-.....+..+++|+.||.++.+|.++|+.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~----~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~ 497 (571)
T d2ad6a1 422 QFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp SCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC----CCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence 1123578889999998876655332 111111233467888899999999999999999
Q ss_pred EEEEcCCCCCCCCceEEEecCCCE-EEEEE
Q 001396 607 LTTIDAGGGLPENPRICFNKNGTL-LAVIA 635 (1086)
Q Consensus 607 ~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~ 635 (1086)
+..+....... ..-+.|..||+. +++..
T Consensus 498 lW~~~l~~~~~-a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 498 LWNFKMPSGGI-GSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp EEEEECSSCCC-SCCEEEEETTEEEEEEEE
T ss_pred EEEEECCCCce-ecceEEEECCEEEEEEEe
Confidence 99987765432 234777778864 44433
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.24 E-value=0.038 Score=59.17 Aligned_cols=248 Identities=9% Similarity=0.010 Sum_probs=128.6
Q ss_pred CCccEEEEEECCCCCEEEEEe-CC----CEEEEEEecCCCccccceEeccccccEeEEEecCCCCcEEEEEEe-------
Q 001396 389 PGVSVNRVVWSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG------- 456 (1086)
Q Consensus 389 h~~~V~~l~~spdg~~las~~-~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~d~~~l~l~s~~------- 456 (1086)
+.-.+..+++|||++++|.+- .. ..+++.|+.+|+.+.. .+. ......++|++|++.+ +.+.-
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~~-~Y~~~~~~~~~~ 197 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKGM-FYNAYPQQDGKS 197 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSEE-EEEECCCCSSCC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCEE-EEEEeccccCcc
Confidence 334455678899999999762 22 3799999999975532 121 1123578999999952 33321
Q ss_pred --------CCCcEEEEeCCCCcee--EEeecCCcc--eEEEeecccCCccEEEEEEc---CCeEEEE--EcCCCce----
Q 001396 457 --------DDKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISV---DGKIKAW--LYDSLGA---- 515 (1086)
Q Consensus 457 --------~d~~i~iwd~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~---dg~i~vw--d~~~~~~---- 515 (1086)
....|..|.+.++..- ..+...... +..+.. +.++.+++.... ++...+| |+.....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 1225777887766432 333333333 333333 556677654432 3334444 4432211
Q ss_pred ----eEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCee--eeEEecccccCCceEEEEEecCCCEEEE
Q 001396 516 ----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILA 589 (1086)
Q Consensus 516 ----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 589 (1086)
............ ... .+|..++.-+.....++.|...++..... ...+-.+. ...+..-.+...+.+|+.
T Consensus 276 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~--~~~~~~~~~~~~~~~lvl 351 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVL 351 (430)
T ss_dssp SCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC--SSCEEEEEEEETTTEEEE
T ss_pred ccceeEeecccccceE-EEe-cCCceeecccCcccccceeEEecCCCCccccceEEeccc--CcceeeeEEEEECCEEEE
Confidence 111222222222 222 23444444333333467787777775432 12232222 134544445445556665
Q ss_pred E-ECCC--cEEEEEcCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCcEEEEECCCCC
Q 001396 590 A-GDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 649 (1086)
Q Consensus 590 ~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 649 (1086)
. ..++ .|++++..++.......... ..+..+...++...+..... -.++.-+|+.+++
T Consensus 352 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 4 3444 48889998887765543332 22333333445544443322 2677888888764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.25 E-value=1.7 Score=43.37 Aligned_cols=199 Identities=12% Similarity=0.122 Sum_probs=113.6
Q ss_pred CCCEEEEEe-CCeEEEEEccCceEEEEEcCCCCCeEEEEEcC----C-CCCEEEEEe--CC--CeEEEEEcCC-ceeEEE
Q 001396 807 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP----H-DNNVIAIGM--DD--STILIYNARS-SEVISK 875 (1086)
Q Consensus 807 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~----~-d~~~lasg~--~d--g~v~iwd~~~-~~~~~~ 875 (1086)
+..+++... .+-|.+||+. |+.+..+. .+.++.+..-. . ...-+++++ .+ .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 445555554 4559999985 77777764 34565554331 0 222344554 22 3688887753 223333
Q ss_pred eccc-------cCCeEEEEE--eCC-CC-EEEEEeCCCcEEEEECCCCc--eeeeeeeeccCCCccCCCCceEEEEecCC
Q 001396 876 LEGH-------SKRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQ 942 (1086)
Q Consensus 876 l~~h-------~~~v~~l~~--spd-g~-~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 942 (1086)
+... ...+..+|+ ++. |. +++....+|.+..|.+.... ......++.+... ..+..|.+.+..
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence 3321 124677777 654 44 45666778999988874321 1222333333222 258899999999
Q ss_pred CEEEEEeCC-eEEEEEcCC-----ccceeccccCC-ccCEEEEEEe--CCCC-E-EEEEECCCcEEEEEcCC-Cceeeee
Q 001396 943 TRFLLVHET-HLAIYEAEE-----LTCLKQWFPIS-SVPISQATFS--CDCR-M-VFTSFVDGTLSIHEASN-LEVQCRI 1010 (1086)
Q Consensus 943 ~~l~~~~d~-~i~vwd~~~-----~~~~~~~~~~h-~~~v~~l~fs--~dg~-~-l~s~~~Dg~v~vWd~~~-~~~~~~~ 1010 (1086)
..|.++.++ .+..+++.- +..+.....++ ...+-.|+.- .++. | |+|.-.|.+..|||..+ ...+.+|
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 999997554 455555431 12221111222 5677777753 3333 4 44554678899999987 4777777
Q ss_pred cc
Q 001396 1011 LS 1012 (1086)
Q Consensus 1011 ~~ 1012 (1086)
..
T Consensus 272 ~i 273 (353)
T d1h6la_ 272 QI 273 (353)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0078 Score=52.46 Aligned_cols=79 Identities=10% Similarity=0.159 Sum_probs=62.7
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccccC----C--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYG----D--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~--~~~~r~~l~ 139 (1086)
++|.++-+.|+||+..|+..+|..|+++.-..+.....+++++|..+....++.+++....... . ...+-..|+
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 124 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 124 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHH
Confidence 9999999999999999999999999998655555456888999999988888777665443221 1 367788888
Q ss_pred HHHHh
Q 001396 140 LELKQ 144 (1086)
Q Consensus 140 ~~l~~ 144 (1086)
..|++
T Consensus 125 ~~L~~ 129 (149)
T d2nxpa1 125 RHLQE 129 (149)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88875
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.90 E-value=1.4 Score=44.35 Aligned_cols=159 Identities=9% Similarity=0.100 Sum_probs=91.8
Q ss_pred eEEEecCCCCcEEEEEEe------------CCCcEEEEeCCCCcee-EEeecCC-------cceEEEeecccCCcc-EEE
Q 001396 439 NDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSFEGHG-------APVYSLCPHAKENIH-FIF 497 (1086)
Q Consensus 439 ~~v~~s~d~~~l~l~s~~------------~d~~i~iwd~~~~~~~-~~~~~h~-------~~v~~~~~~~~~~~~-~l~ 497 (1086)
-+++..|||. .+++++ ..|.|.++|+.+.+.. ..+.... -....+.+....++. +|+
T Consensus 38 EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 38 EDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred ceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 3577778776 444442 1488999998765432 2221111 122344443344554 344
Q ss_pred EEE---cCCeEEEEEcCCCceeEE----ec-CCCCceEEEEEecCCCEEEEEeeC-------------CCCceeEEEEeC
Q 001396 498 SIS---VDGKIKAWLYDSLGARVD----YD-APGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWNE 556 (1086)
Q Consensus 498 s~s---~dg~i~vwd~~~~~~~~~----~~-~~~~~i~~~~~s~d~~~l~~~~~~-------------~~~~~~i~iwd~ 556 (1086)
+.. ...+|.+|++........ .. ........+++..+|.++++-... +...+.+.-||.
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 443 456788888765443222 22 222357889999999988873210 112345555554
Q ss_pred CCCeeeeEEecccccCCceEEEEEecCCCEEEEEE-CCCcEEEEEcCCCe
Q 001396 557 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ 605 (1086)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~ 605 (1086)
++......+ - ...+.++++||+++|+.+. ..+.|++|++....
T Consensus 196 --~~~~~~~~~-l---~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 196 --NDVRVVAEG-F---DFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp --SCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred --CceEEEcCC-C---CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 333222333 2 4689999999998887754 67789999987543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.66 E-value=3.9 Score=40.69 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=107.1
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEeecCCcceEEEeecc----cCCccEEEEEEc--C--CeEEEEEcCCCce-eEEecC
Q 001396 451 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGA-RVDYDA 521 (1086)
Q Consensus 451 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~--d--g~i~vwd~~~~~~-~~~~~~ 521 (1086)
+++.....+-|.+||+ .|+.+..+. .+.++.+.... ..+...++.++. + .+|.+|.+..... ...+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5565566667999997 588887764 35666655421 122223455542 2 3688887764332 222222
Q ss_pred C-------CCceEEEEE--ecC-CCEEEEEeeCCCCceeEEEEeC---CCC----eeeeEEecccccCCceEEEEEecCC
Q 001396 522 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK 584 (1086)
Q Consensus 522 ~-------~~~i~~~~~--s~d-~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 584 (1086)
. ...+..+|+ ++. |...+.... + ++.+..|.+ ..+ +.++.+.. ...+..|.+....
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~ 191 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY 191 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence 1 124667776 554 554444432 2 445666654 333 34445544 2578999999999
Q ss_pred CEEEEEECCCcEEEEEcCC-----CeeEEEEcCCCCCCCCceEEEec--C--CCEEEEEECCCcEEEEECCCC
Q 001396 585 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--N--GTLLAVIANENRIKILETPES 648 (1086)
Q Consensus 585 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~--~~~l~~~~~dg~i~iw~~~~~ 648 (1086)
..|+.+-++..|..++... +..+.......-...+-.++.-. + |-+|++.-.+++..+|+....
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999888776666542 22232222211223455666543 3 334444445788999998764
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=93.58 E-value=0.016 Score=49.05 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=67.8
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccccccccccc----cCC--ChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKY----YGD--ALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~----~~~--~~~~r~~l~ 139 (1086)
++|+++-+.|+||+..|+.++|..++++.-..+. ...+++++|+.+....++.+++..... +.. ...+-..|+
T Consensus 27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL~ 105 (131)
T d2j4ba1 27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 105 (131)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHHH
Confidence 9999999999999999999999999997544443 356778888888887777666543331 111 367788888
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHhh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 177 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 177 (1086)
..|++-= -.-+..+|++.+..+
T Consensus 106 ~fL~~~~----------------~~~il~iin~~l~i~ 127 (131)
T d2j4ba1 106 NFLEERN----------------LTYILKILNQHLDIK 127 (131)
T ss_dssp HHHHHTT----------------CHHHHHHHHHHEEEE
T ss_pred HHHHhCC----------------chHHHHHHHHheeEe
Confidence 8888631 124677777665543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.36 E-value=3.8 Score=41.30 Aligned_cols=184 Identities=10% Similarity=0.076 Sum_probs=110.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEEccCc-----------eEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001396 796 QEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 864 (1086)
Q Consensus 796 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i 864 (1086)
.....-+++++...++++++...+.|..+..- ....... -..|..++|+. + .|++.. ++.+..
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~-d--~l~v~~-~~~l~~ 109 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG-D--QVLVST-RNALYS 109 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET-T--EEEEEE-SSEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC-C--EEEEEe-CCCEEE
Confidence 34566789999888888888777888775321 1111111 13689999986 3 455443 566888
Q ss_pred EEcCCceeEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCE
Q 001396 865 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 944 (1086)
Q Consensus 865 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 944 (1086)
++..+-........-..++..+.++|. .++....++.+.++++..+...... ....+ ....+.+.+++|++.|+.
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~~-~~~~~~~~~v~ws~kgkq 184 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA--QNVTS-FDVTNSQLAVLLKDRSFQ 184 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE--ESEEE-EEECSSEEEEEETTSCEE
T ss_pred EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc--CCcce-EEecCCceEEEEeCCcEE
Confidence 887664333333334456788888775 5666677899999999887533211 00000 001135788999999998
Q ss_pred EEEEeCCeEEEE-EcCCccceeccccCCccCEEEEEEeCCCCEEEEEE
Q 001396 945 FLLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 991 (1086)
Q Consensus 945 l~~~~d~~i~vw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s~~ 991 (1086)
++++..+...+- ++.....+.. .......|.++.|..+..++++-+
T Consensus 185 ~v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 185 SFAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EEEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence 888754443332 2222211111 112355788999998877777553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.27 E-value=2.6 Score=37.51 Aligned_cols=153 Identities=9% Similarity=0.081 Sum_probs=85.2
Q ss_pred cEeEEEecCCCCcEEEEEEeCCCcEEEEeCCCCceeE--EeecCCcceEEE--------eecccCCccEEEEEEc-CCeE
Q 001396 437 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYSL--------CPHAKENIHFIFSISV-DGKI 505 (1086)
Q Consensus 437 ~v~~v~~s~d~~~l~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~--------~~~~~~~~~~l~s~s~-dg~i 505 (1086)
+|.+++. |++. .+.+|+......+|-++.|+... .+.+ -+.|+.+ .+. .++..-++++.. .|.+
T Consensus 105 RI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 105 RILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp EEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEEE
T ss_pred EEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeee-cCCcceEEEEecccCCE
Confidence 4555554 6665 67777777778888888876532 2221 1233333 221 112222333333 4455
Q ss_pred EEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE-Eeccc---ccCCceEEEEEe
Q 001396 506 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQ---LQHNSVSVVHFD 581 (1086)
Q Consensus 506 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~---~~~~~v~~~~~~ 581 (1086)
+++ ....+.++.....++.+. ++....- ++....-+|+++++..+. +.... ...-.|.-+-+.
T Consensus 180 ri~-----------tpkeGS~~~ay~~~gnKV-~sdyEt~-gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~ 246 (313)
T d2hu7a1 180 RVF-----------DSGEGSFSSASISPGMKV-TAGLETA-REARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYL 246 (313)
T ss_dssp EEE-----------CCSSEEEEEEEECTTSCE-EEEEEES-SCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEEC
T ss_pred EEe-----------cCCCCcccceeEccCcee-eeccCCC-CceEEEEEecccCceeeeecCcccceeecceEEEeeeeC
Confidence 554 445556666667776665 5444332 244444669887754332 11111 011345556689
Q ss_pred cCCCEEEEEECCCcEEEEEcCCCeeEEE
Q 001396 582 TAKDQILAAGDDHVIKIWDMNKVQLLTT 609 (1086)
Q Consensus 582 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 609 (1086)
|+++.++.+-.||.-++|. +|+.+..
T Consensus 247 Pdd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 247 PDGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp TTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred CCCcEEEEEecCCchheee--cceEecC
Confidence 9999989999999999887 4555543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=2 Score=43.37 Aligned_cols=97 Identities=6% Similarity=0.000 Sum_probs=67.8
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEEccCceEEEEEcCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001396 798 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 877 (1086)
Q Consensus 798 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 877 (1086)
.|..++|+.| .++...++.+..++..+............++..+.++| . .++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccC
Confidence 5888999765 57777778888888876554444444456788888887 3 56667779999999998875432221
Q ss_pred c-----ccCCeEEEEEeCCCCEEEEEe
Q 001396 878 G-----HSKRVTGLVFSDALNILVSSG 899 (1086)
Q Consensus 878 ~-----h~~~v~~l~~spdg~~l~s~s 899 (1086)
+ -.+.+.+++|++.|+.++++.
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeC
Confidence 1 235677888888887777764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.79 E-value=2.9 Score=43.78 Aligned_cols=113 Identities=11% Similarity=0.085 Sum_probs=64.4
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecC---CCEEEE--Ee-----
Q 001396 880 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLL--VH----- 949 (1086)
Q Consensus 880 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~l~~--~~----- 949 (1086)
-...++|+|.|||++|++--..|.|++++..++.......+........-.+....++|+|+ ..++.+ +.
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 34678999999999998875679999998887664442222111111111245788999985 344433 11
Q ss_pred -C----Ce--EEEEEcCCccc--------eeccccCCccCEEEEEEeCCCCEEEEEEC
Q 001396 950 -E----TH--LAIYEAEELTC--------LKQWFPISSVPISQATFSCDCRMVFTSFV 992 (1086)
Q Consensus 950 -d----~~--i~vwd~~~~~~--------~~~~~~~h~~~v~~l~fs~dg~~l~s~~~ 992 (1086)
+ +. +..+....... +.............|.|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 0 11 22233222111 11111122345678999999988887764
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=5.7 Score=38.18 Aligned_cols=110 Identities=5% Similarity=-0.063 Sum_probs=52.8
Q ss_pred cEEEEEEcC-----CeEEEEEcCCCceeEEecCCCCceEEEEEecCCCEEEEEeeCCC-CceeEEEEeCCCCeeeeEEec
Q 001396 494 HFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQG 567 (1086)
Q Consensus 494 ~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~ 567 (1086)
..++.|+.+ ..+..||....+-...-..............+++.++.++.+.. .......+|..+.+....-..
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 229 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred cceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc
Confidence 355555543 34677777654433221111111111222234555666554322 124567788877655433222
Q ss_pred ccccCCce-EEEEEecCCCEEEEEECCC-----cEEEEEcCCCeeE
Q 001396 568 LQLQHNSV-SVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLL 607 (1086)
Q Consensus 568 ~~~~~~~v-~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~ 607 (1086)
.. ... .+++. .+++.++.|+.++ .+.+||+.+++-.
T Consensus 230 p~---~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 230 KH---RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 271 (288)
T ss_dssp SS---CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred cC---cccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEEE
Confidence 11 111 12222 3566777766443 3788999876643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.24 E-value=4.5 Score=42.25 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEec------cccCCeEEEEEeCC
Q 001396 838 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA 891 (1086)
Q Consensus 838 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~------~h~~~v~~l~~spd 891 (1086)
...++|+|.| +++++++--..|.|++++..+++.. ..+. .-.+....|+|+|+
T Consensus 27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4678999999 8988887655799999998876542 2221 11245778999985
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=89.38 E-value=0.019 Score=48.82 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=65.1
Q ss_pred ehhhhhhhhhhhhcCCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccccccccccccc----C--CChHHHHHHH
Q 001396 66 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYY----G--DALSARKNMM 139 (1086)
Q Consensus 66 ~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~----~--~~~~~r~~l~ 139 (1086)
++|.++-+.|+||+..+ ..+|..|+++.-..++....+++++|..+....++.+++...... . ....+-..|+
T Consensus 29 lLyPvFvh~yL~Lv~~~-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 107 (134)
T d2j49a1 29 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHHHHHHH
Confidence 89999999999999876 468999998755544333456677777777776666555433311 1 1377888899
Q ss_pred HHHHhhcccCccccccccCCCCCchHHHHHHHHhHHh
Q 001396 140 LELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNW 176 (1086)
Q Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~ 176 (1086)
..|++-=.. --+-+..+|+|.+..
T Consensus 108 ~fL~~~~~~-------------g~~~il~ii~~~l~i 131 (134)
T d2j49a1 108 YFLNENESI-------------GGSLIISVINQHLDP 131 (134)
T ss_dssp HHHHHTGGG-------------THHHHHHHHHHHEEE
T ss_pred HHHHhcccc-------------hHHHHHHHHHHhcce
Confidence 998873111 012477788776643
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.74 E-value=10 Score=33.68 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=95.6
Q ss_pred EEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEecccc-------CCeEEEEE
Q 001396 819 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHS-------KRVTGLVF 888 (1086)
Q Consensus 819 i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~-------~~v~~l~~ 888 (1086)
|.+-++........+.... -.|.++++. |.+.+.+|+....+.+|-++.|++. ..+.+.. +-|..+.+
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 5555554322333343333 456777775 7889999999999999999988653 3344321 12333322
Q ss_pred -eCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeeccCCCccCCCCceEEEEecCCCEEEEE----eCCeEEEEEcCCcc
Q 001396 889 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT 962 (1086)
Q Consensus 889 -spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~d~~i~vwd~~~~~ 962 (1086)
.+..+-+.++.- .|.++|++-..| .+.....+++.+. ++. .+....-+|..++.
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 233233444443 555555554442 4666777777776 442 22233355888766
Q ss_pred ceeccccCC------ccCEEEEEEeCCCCEEEEEECCCcEEEEE
Q 001396 963 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHE 1000 (1086)
Q Consensus 963 ~~~~~~~~h------~~~v~~l~fs~dg~~l~s~~~Dg~v~vWd 1000 (1086)
.-+.-+++. ...|+-+-+.||+++++.+-.||.-+++.
T Consensus 222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence 544433332 45677777999999988899999998886
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=14 Score=35.09 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=50.5
Q ss_pred CeEEEEEccCceEEEEEcCCC-CCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeEEEeccccCCeEEEEEeC
Q 001396 817 GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSD 890 (1086)
Q Consensus 817 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~v~~l~~sp 890 (1086)
..+..||..+.+-...-.... ....+.+.. ++++++.|+.++ ....+|..+.+....-.........-+...
T Consensus 164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 241 (288)
T d1zgka1 164 NSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 241 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE
Confidence 347888887765443221111 112233333 456666665543 567788777654332121111121122223
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCc
Q 001396 891 ALNILVSSGGDA-----QIFVWDVDGWG 913 (1086)
Q Consensus 891 dg~~l~s~s~dg-----~i~iwd~~~~~ 913 (1086)
++++++.|+.++ .|.+||+.+..
T Consensus 242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 778888887654 37889998865
|