Citrus Sinensis ID: 001397
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1086 | 2.2.26 [Sep-21-2011] | |||||||
| Q5ZLT0 | 1087 | Exportin-7 OS=Gallus gall | yes | no | 0.948 | 0.947 | 0.430 | 0.0 | |
| Q9UIA9 | 1087 | Exportin-7 OS=Homo sapien | yes | no | 0.952 | 0.951 | 0.428 | 0.0 | |
| Q9EPK7 | 1087 | Exportin-7 OS=Mus musculu | yes | no | 0.954 | 0.954 | 0.428 | 0.0 | |
| Q5R9G4 | 1087 | Exportin-7 OS=Pongo abeli | yes | no | 0.952 | 0.951 | 0.427 | 0.0 | |
| Q704U0 | 1087 | Exportin-7-A OS=Xenopus l | N/A | no | 0.951 | 0.950 | 0.424 | 0.0 | |
| Q569Z2 | 1087 | Exportin-7-B OS=Xenopus l | N/A | no | 0.951 | 0.950 | 0.424 | 0.0 | |
| Q9H2T7 | 1088 | Ran-binding protein 17 OS | no | no | 0.951 | 0.949 | 0.403 | 0.0 | |
| Q99NF8 | 1088 | Ran-binding protein 17 OS | no | no | 0.953 | 0.952 | 0.405 | 0.0 | |
| Q9GQN0 | 1098 | Ran-binding protein 16 OS | yes | no | 0.944 | 0.934 | 0.381 | 0.0 | |
| Q54DN3 | 1007 | Exportin-7 OS=Dictyosteli | yes | no | 0.870 | 0.938 | 0.347 | 1e-162 |
| >sp|Q5ZLT0|XPO7_CHICK Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1116 (43%), Positives = 694/1116 (62%), Gaps = 86/1116 (7%)
Query: 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLAS 60
++SLAQLE LC++LY + D+ R AE L F+ + D +S+CQ +L+ + Y+ +LA+
Sbjct: 5 VQSLAQLENLCKQLYETTDTATRLQAEKALVEFTNSPDCLSKCQLLLERGSSSYSQLLAA 64
Query: 61 SSLLKQV--TEHSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYL 118
+ L K V T + L L+ R+DI N Y+
Sbjct: 65 TCLTKLVSRTNNPLPLEQRIDIRN----------------------------------YV 90
Query: 119 INYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDR----FRDLVKESTNFLSQATSDHY 174
+NYLA R P+L +FVT +LIQL R+TK GWFD + FR+++ + T FL Q + +H
Sbjct: 91 LNYLATR-PKLATFVTQALIQLYARITKLGWFDCQKDEYVFRNVITDVTRFL-QDSVEHC 148
Query: 175 AIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQ-------LK 227
IG+ IL+QL +E+NQ + P T HR++A SFRD SLF IF +S L Q L
Sbjct: 149 IIGVTILSQLTNEINQADTTHPLTKHRKIASSFRDSSLFDIFTLSCNLLKQASGKNLNLN 208
Query: 228 SDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDY 287
+ L L L CL+FDF+GTS DESS++ TVQIP++WR D STLQ+FFD
Sbjct: 209 DESQHGLLMQLLKLTHNCLNFDFIGTSTDESSDDLCTVQIPTSWRSAFLDSSTLQLFFDL 268
Query: 288 YAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNY 347
Y S L CLV++ASVRRSLF N+A R+KFL+HL+ G K IL+ Q L+D +NY
Sbjct: 269 YHSIPPSFSPLVLSCLVQIASVRRSLF-NNAERAKFLSHLVDGVKRILENPQSLSDPNNY 327
Query: 348 HEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRL 407
HE+CRLL R + NYQL ELV VE Y + I+L+A FT+ SLQ W++A +SV+YLL LW RL
Sbjct: 328 HEFCRLLARLKSNYQLGELVKVENYPEVIRLIANFTVTSLQHWEFAPNSVHYLLSLWQRL 387
Query: 408 VTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCF 467
SVPY+K P +L+ + P++T+ +ITSR SV D L D PLD+ L+Q QLD
Sbjct: 388 AASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGLED-PLDDTGLVQQQLDQL 446
Query: 468 PYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKI 527
+ R +YE + ++ + QSY E + T +++V E +L W+V+II A++
Sbjct: 447 STIGRCEYEKTCALLVQLFDQSAQSYQELLQSATASPMDVAVQEGRLTWLVYIIGAVIG- 505
Query: 528 KQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKS 587
+ + S + Q+ +D EL RVLQL+N+TDS R + ++L+ A+L+FF+ FRK
Sbjct: 506 GRVSFASTDEQDAMDGELVCRVLQLMNLTDS-----RLAQAGNEKLELAMLSFFEQFRKI 560
Query: 588 YVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLE 647
Y+GDQ SSK LY RLSE+LGL+D ++L+V +GKI TNLK + + + TL L +
Sbjct: 561 YIGDQVQKSSK-LYRRLSEVLGLNDETMVLSVFIGKIITNLKYWGRCEPITSKTLQLLND 619
Query: 648 LASGYMTGKLLLKLDTIKFIVANHTREHFPF--------LEEYRCSRSRTTFYYTIGWLI 699
L+ GY + + L+KL ++F++ NHT EHF F L + RC RTTFY +G L+
Sbjct: 620 LSIGYSSVRKLVKLSAVQFMLNNHTSEHFSFLGINNQSNLTDMRC---RTTFYTALGRLL 676
Query: 700 FME--ESPVKFKSSMDPLLQVFISLESTPDSMFRTDA-----VKCALIGLMRDLRGIAMA 752
++ E +++ M PL F T MF T+ K L+GL+RDLRGIA A
Sbjct: 677 MVDLGEDEDQYEQFMLPLTAAF----ETVAQMFSTNTFNEQEAKRTLVGLVRDLRGIAFA 732
Query: 753 TNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSS 812
N++ ++ +LF+W+YP++MP+L + I W P TTP+LK MAE V N++QRL FD SS
Sbjct: 733 FNAKTSFMMLFEWIYPSYMPILQRAIELWYHDPACTTPVLKLMAELVHNRSQRLQFDVSS 792
Query: 813 PNGILLFREVSKLIVAYGSRVLSLPNAA--DIYAYKYKGMWICFTILARALAGNYVNFGV 870
PNGILLFRE SK+I YG+R+L+L +YA K KG+ ICF++L AL+G+YVNFGV
Sbjct: 793 PNGILLFRETSKMITTYGNRILTLGEVPKDQVYALKLKGISICFSMLKAALSGSYVNFGV 852
Query: 871 FELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNT 930
F LYGD AL +AL +K+ LSIP +D+L + KL+++Y++ LEVL H+ FI +L +
Sbjct: 853 FRLYGDDALDNALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQDHMNFIASLEPHV 912
Query: 931 FMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMG-EAPTSPAAINLAR--HIV 987
M+I+ S+ GL LDT + + C + +D++ + F ++ + T+P R HI+
Sbjct: 913 IMYILSSISEGLTALDTMVCTGCCSCLDHIVTYLFKQLSRSTKKRTTPLTQESDRFLHIM 972
Query: 988 -ECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLILISEQVFSDLKAQILTSQPVDQH 1046
+ P + ++L T+ I++FEDC NQWS+SRP+L LIL++E+ FSDL+ I+ SQP ++
Sbjct: 973 QQHPEMIQQMLSTVLNIIIFEDCRNQWSMSRPLLGLILLNEKYFSDLRNSIVNSQPPEKQ 1032
Query: 1047 QRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHE 1082
Q + +CF+ LM + R+L +KNRD+FTQNL+ FR E
Sbjct: 1033 QAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRRE 1068
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Mediates the nuclear export of proteins (cargos) with broad substrate specificity. Gallus gallus (taxid: 9031) |
| >sp|Q9UIA9|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9EPK7|XPO7_MOUSE Exportin-7 OS=Mus musculus GN=Xpo7 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5R9G4|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q569Z2|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9H2T7|RBP17_HUMAN Ran-binding protein 17 OS=Homo sapiens GN=RANBP17 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q99NF8|RBP17_MOUSE Ran-binding protein 17 OS=Mus musculus GN=Ranbp17 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9GQN0|RBP16_DROME Ran-binding protein 16 OS=Drosophila melanogaster GN=Ranbp16 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q54DN3|XPO7_DICDI Exportin-7 OS=Dictyostelium discoideum GN=xpo7 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1086 | ||||||
| 255569209 | 1089 | Exportin-7, putative [Ricinus communis] | 0.968 | 0.966 | 0.891 | 0.0 | |
| 359494939 | 1052 | PREDICTED: exportin-7-like [Vitis vinife | 0.968 | 1.0 | 0.896 | 0.0 | |
| 449458075 | 1061 | PREDICTED: LOW QUALITY PROTEIN: exportin | 0.967 | 0.990 | 0.878 | 0.0 | |
| 224057198 | 1049 | predicted protein [Populus trichocarpa] | 0.965 | 1.0 | 0.882 | 0.0 | |
| 356507720 | 1051 | PREDICTED: exportin-7-A-like [Glycine ma | 0.965 | 0.998 | 0.858 | 0.0 | |
| 224073084 | 1049 | predicted protein [Populus trichocarpa] | 0.965 | 1.0 | 0.873 | 0.0 | |
| 356517848 | 1053 | PREDICTED: exportin-7-A-like [Glycine ma | 0.965 | 0.996 | 0.857 | 0.0 | |
| 334187452 | 1052 | armadillo/beta-catenin-like repeat-conta | 0.968 | 1.0 | 0.816 | 0.0 | |
| 8978348 | 1059 | human RAN binding protein 16-like [Arabi | 0.968 | 0.993 | 0.811 | 0.0 | |
| 334187450 | 1059 | armadillo/beta-catenin-like repeat-conta | 0.967 | 0.992 | 0.815 | 0.0 |
| >gi|255569209|ref|XP_002525573.1| Exportin-7, putative [Ricinus communis] gi|223535152|gb|EEF36832.1| Exportin-7, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2001 bits (5185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 968/1086 (89%), Positives = 1013/1086 (93%), Gaps = 34/1086 (3%)
Query: 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLAS 60
MESLAQLEALCERLYNSQDS ERAHAENTLKCFS+NTDYISQCQ+ILDNALTPYALMLAS
Sbjct: 1 MESLAQLEALCERLYNSQDSAERAHAENTLKCFSMNTDYISQCQYILDNALTPYALMLAS 60
Query: 61 SSLLKQVTEHSLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLIN 120
SSLLKQVTEHSL+ QLRLDI N YLIN
Sbjct: 61 SSLLKQVTEHSLSTQLRLDIQN----------------------------------YLIN 86
Query: 121 YLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKI 180
YLA RGPELQ FV ASLIQLLCR+TKFGWFDDDRFRD+VKESTNFL QATS+HYAIGLKI
Sbjct: 87 YLATRGPELQPFVIASLIQLLCRVTKFGWFDDDRFRDVVKESTNFLGQATSNHYAIGLKI 146
Query: 181 LNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALS 240
LNQLVSEMNQPN GLP+T+HRRVACSFRDQSLFQIFQISLTSL QLK+DV+SRLQELALS
Sbjct: 147 LNQLVSEMNQPNTGLPATNHRRVACSFRDQSLFQIFQISLTSLHQLKNDVSSRLQELALS 206
Query: 241 LCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEAL 300
L LKCLSFDFVGTSIDESSEEFGTVQIPS+WRPVLEDPSTLQIFFDYYAIT APLSKEAL
Sbjct: 207 LSLKCLSFDFVGTSIDESSEEFGTVQIPSSWRPVLEDPSTLQIFFDYYAITTAPLSKEAL 266
Query: 301 ECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVN 360
ECLVRLASVRRSLFTND RSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVN
Sbjct: 267 ECLVRLASVRRSLFTNDTTRSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVN 326
Query: 361 YQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPS 420
YQLSELVNVEGY DWIQLVAEFTL SLQSWQWASSSVYYLLGLWS+LVTSVPYLKGDAPS
Sbjct: 327 YQLSELVNVEGYGDWIQLVAEFTLTSLQSWQWASSSVYYLLGLWSKLVTSVPYLKGDAPS 386
Query: 421 LLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYENSGL 480
+LDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYE+SG
Sbjct: 387 MLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYESSGF 446
Query: 481 YIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEV 540
YIIN MEPILQ+YTERAR+QT D +E++VIEAKLAWIVHIIAAI+KIKQ TGCS ESQE+
Sbjct: 447 YIINIMEPILQAYTERARVQTTDGNELAVIEAKLAWIVHIIAAILKIKQSTGCSAESQEM 506
Query: 541 LDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQL 600
LDAELSARVLQLINV DSGLHSQRY +LSKQRLDRAILTFFQHFRKSYVGDQA+HSSKQL
Sbjct: 507 LDAELSARVLQLINVMDSGLHSQRYGQLSKQRLDRAILTFFQHFRKSYVGDQAVHSSKQL 566
Query: 601 YARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLK 660
YARLSELLGLHDHL+LLNVIVGKIATNLKCYTES+EVIDHTL+LFLELASGYMTGKLLLK
Sbjct: 567 YARLSELLGLHDHLVLLNVIVGKIATNLKCYTESEEVIDHTLNLFLELASGYMTGKLLLK 626
Query: 661 LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEESPVKFKSSMDPLLQVFI 720
LD IKFIVANHTREHFPFLEEYRCSRSRT FYYTIGWLIFME+SPVKFKSSM+PLLQVFI
Sbjct: 627 LDAIKFIVANHTREHFPFLEEYRCSRSRTIFYYTIGWLIFMEDSPVKFKSSMEPLLQVFI 686
Query: 721 SLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH 780
SLESTPD+MFR+DAVK ALIGLMRDLRGIAMATN TYGLLFDWLYPAH+PLLLKGISH
Sbjct: 687 SLESTPDAMFRSDAVKFALIGLMRDLRGIAMATNRHVTYGLLFDWLYPAHLPLLLKGISH 746
Query: 781 WTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAA 840
W DTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYG+R+L+LPNAA
Sbjct: 747 WADTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGTRILTLPNAA 806
Query: 841 DIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILA 900
DIYAYKYKG+WIC TIL+RALAGNYVNFGVFELYGDRAL+DALDIALK+TLSIPLADILA
Sbjct: 807 DIYAYKYKGIWICLTILSRALAGNYVNFGVFELYGDRALADALDIALKLTLSIPLADILA 866
Query: 901 FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNL 960
FRKLT+AYFAFLEVLFSSHI FILNL TNTFMHIVGSLESGLKGLDTNISSQCA+AVDNL
Sbjct: 867 FRKLTRAYFAFLEVLFSSHIIFILNLETNTFMHIVGSLESGLKGLDTNISSQCASAVDNL 926
Query: 961 AAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPML 1020
AAFYFNNITMGEAPT PAA+ LARHI +CP LFPEILKTLFEIVLFEDCGNQWSLSRPML
Sbjct: 927 AAFYFNNITMGEAPTLPAAVKLARHIADCPNLFPEILKTLFEIVLFEDCGNQWSLSRPML 986
Query: 1021 SLILISEQVFSDLKAQILTSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFR 1080
SLILISEQ+FSDLKAQIL SQPVDQHQRLS+CFDKLMADV RSLDSKNRD+FTQNLTVFR
Sbjct: 987 SLILISEQIFSDLKAQILVSQPVDQHQRLSLCFDKLMADVTRSLDSKNRDRFTQNLTVFR 1046
Query: 1081 HEFRVK 1086
HEFRVK
Sbjct: 1047 HEFRVK 1052
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494939|ref|XP_003634876.1| PREDICTED: exportin-7-like [Vitis vinifera] gi|298205126|emb|CBI40647.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449458075|ref|XP_004146773.1| PREDICTED: LOW QUALITY PROTEIN: exportin-7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224057198|ref|XP_002299168.1| predicted protein [Populus trichocarpa] gi|222846426|gb|EEE83973.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356507720|ref|XP_003522612.1| PREDICTED: exportin-7-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224073084|ref|XP_002303964.1| predicted protein [Populus trichocarpa] gi|222841396|gb|EEE78943.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356517848|ref|XP_003527598.1| PREDICTED: exportin-7-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|334187452|ref|NP_001190236.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|334187454|ref|NP_001190237.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332003588|gb|AED90971.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332003589|gb|AED90972.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|8978348|dbj|BAA98201.1| human RAN binding protein 16-like [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334187450|ref|NP_001190235.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332003587|gb|AED90970.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1086 | ||||||
| TAIR|locus:2152840 | 1066 | AT5G06120 "AT5G06120" [Arabido | 0.892 | 0.909 | 0.814 | 0.0 | |
| UNIPROTKB|Q5ZLT0 | 1087 | XPO7 "Exportin-7" [Gallus gall | 0.881 | 0.880 | 0.435 | 6.2e-227 | |
| ZFIN|ZDB-GENE-060628-2 | 1090 | xpo7 "exportin 7" [Danio rerio | 0.881 | 0.877 | 0.436 | 2.7e-226 | |
| UNIPROTKB|A1A4I8 | 1087 | XPO7 "Uncharacterized protein" | 0.881 | 0.880 | 0.435 | 1.2e-225 | |
| MGI|MGI:1929705 | 1087 | Xpo7 "exportin 7" [Mus musculu | 0.881 | 0.880 | 0.434 | 1.5e-225 | |
| UNIPROTKB|Q9UIA9 | 1087 | XPO7 "Exportin-7" [Homo sapien | 0.881 | 0.880 | 0.435 | 1.9e-225 | |
| UNIPROTKB|E2RH14 | 1087 | XPO7 "Uncharacterized protein" | 0.881 | 0.880 | 0.435 | 2.4e-225 | |
| UNIPROTKB|E7ESC6 | 1088 | XPO7 "Exportin-7" [Homo sapien | 0.881 | 0.879 | 0.435 | 3.1e-225 | |
| UNIPROTKB|F1LQM9 | 1089 | F1LQM9 "Uncharacterized protei | 0.882 | 0.879 | 0.432 | 8.1e-225 | |
| UNIPROTKB|I3LJC4 | 1089 | XPO7 "Uncharacterized protein" | 0.881 | 0.878 | 0.431 | 1.5e-221 |
| TAIR|locus:2152840 AT5G06120 "AT5G06120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4180 (1476.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 796/977 (81%), Positives = 883/977 (90%)
Query: 117 YLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAI 176
Y++NYLA RGP++QSFV ASLIQLLCRLTKFGW DDDRFRD+VKESTNFL Q +SDHYAI
Sbjct: 91 YIVNYLATRGPKMQSFVIASLIQLLCRLTKFGWLDDDRFRDVVKESTNFLEQGSSDHYAI 150
Query: 177 GLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQE 236
GL+IL+QLV EMNQPNPGLPSTHHRRVAC+FRDQSLFQ+F+I+LTSL LK+D A RLQE
Sbjct: 151 GLRILDQLVQEMNQPNPGLPSTHHRRVACNFRDQSLFQVFRIALTSLSYLKNDAAGRLQE 210
Query: 237 LALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLS 296
LALSL L+C+SFDFVGTSIDES+EEFGTVQIP++WR VLED STLQIFFDYY TE+PLS
Sbjct: 211 LALSLALRCVSFDFVGTSIDESTEEFGTVQIPTSWRSVLEDSSTLQIFFDYYGSTESPLS 270
Query: 297 KEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGR 356
KEALECLVRLASVRRSLFTNDA RS FLAHLMTGTKEILQTG+GLADHDNYH +CRLLGR
Sbjct: 271 KEALECLVRLASVRRSLFTNDATRSNFLAHLMTGTKEILQTGKGLADHDNYHVFCRLLGR 330
Query: 357 FRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKG 416
FR+NYQLSELV +EGY +WIQLVAEFTLKSLQSWQWASSSVYYLLG+WSRLV SVPYLKG
Sbjct: 331 FRLNYQLSELVKMEGYGEWIQLVAEFTLKSLQSWQWASSSVYYLLGMWSRLVASVPYLKG 390
Query: 417 DAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYE 476
D+PSLLDEFVPKITEGFI SRFNSVQA PDD +D+PLD VE+LQD+LDCFPYLCRFQYE
Sbjct: 391 DSPSLLDEFVPKITEGFIISRFNSVQASVPDDPTDHPLDKVEVLQDELDCFPYLCRFQYE 450
Query: 477 NSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWXXXXXXXXXXXXQCTGCSLE 536
+G+YIINTMEP+LQSYTER ++Q D SE+++IEAKL+W QC+GCS+E
Sbjct: 451 RTGMYIINTMEPLLQSYTERGQLQFADNSELALIEAKLSWIVHIVAAIVKIKQCSGCSVE 510
Query: 537 SQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHS 596
+QEVLDAELSARVL+L+NV DSGLH QRY E+SKQRLDRAILTFFQ+FRKSYVGDQAMHS
Sbjct: 511 TQEVLDAELSARVLRLVNVMDSGLHRQRYGEISKQRLDRAILTFFQNFRKSYVGDQAMHS 570
Query: 597 SKQLYARXXXXXXXXXXXXXXNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGK 656
SK LYAR NVIVGKIATNLKCYTES+EVI+HTLSLFLELASGYMTGK
Sbjct: 571 SK-LYARLKELLGLHDHLVLLNVIVGKIATNLKCYTESEEVINHTLSLFLELASGYMTGK 629
Query: 657 LLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEESPVKFKSSMDPLL 716
LLLKLDT+ FI++NHTRE FPFLEEYRCSRSRTTFYYTIGWLIFME+S +KFK+SM+PLL
Sbjct: 630 LLLKLDTVTFIISNHTREQFPFLEEYRCSRSRTTFYYTIGWLIFMEDSLIKFKTSMEPLL 689
Query: 717 QVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLK 776
QVF +LESTPDSMFRTDAVK ALIGLMRDLRGIAMAT+SRR+YG LFDWLYPAHMPLLL+
Sbjct: 690 QVFRTLESTPDSMFRTDAVKFALIGLMRDLRGIAMATSSRRSYGFLFDWLYPAHMPLLLR 749
Query: 777 GISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSL 836
G+SHW DTPEVTTPLLKFMAEFV NK QRLTFDSSSPNGILLFREVSKLIVAYGSR+L+L
Sbjct: 750 GVSHWFDTPEVTTPLLKFMAEFVHNKTQRLTFDSSSPNGILLFREVSKLIVAYGSRILAL 809
Query: 837 PNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLA 896
PN ADIYA+KYKG+W+ TIL+RAL+GNY NFGVFELYGDRAL+DALDIALKMTL+IPLA
Sbjct: 810 PNVADIYAFKYKGIWVSLTILSRALSGNYCNFGVFELYGDRALADALDIALKMTLAIPLA 869
Query: 897 DILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAA 956
DILA+RKLTKAYF F+EVL +SHITFIL L+T TFMH+VGSLESGLKGLDT+ISSQCA A
Sbjct: 870 DILAYRKLTKAYFGFVEVLCASHITFILKLDTATFMHLVGSLESGLKGLDTSISSQCAIA 929
Query: 957 VDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLS 1016
VDNLA++YFNNITMGEAPT+PAAI A+HI +CP+LFPEILKTLFEIVLFEDCGNQWSLS
Sbjct: 930 VDNLASYYFNNITMGEAPTTPAAIRFAQHIADCPSLFPEILKTLFEIVLFEDCGNQWSLS 989
Query: 1017 RPMLSLILISEQVFSDLKAQILTSQ-------PVDQHQRLSVCFDKLMADVARSLDSKNR 1069
RPMLSLILISEQ+FSDLKA+IL+SQ P DQHQRLS CFD LM D++R LDSKNR
Sbjct: 990 RPMLSLILISEQIFSDLKAKILSSQSIILMVQPADQHQRLSACFDSLMTDISRGLDSKNR 1049
Query: 1070 DKFTQNLTVFRHEFRVK 1086
DKFTQNLT+FRHEFRVK
Sbjct: 1050 DKFTQNLTLFRHEFRVK 1066
|
|
| UNIPROTKB|Q5ZLT0 XPO7 "Exportin-7" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060628-2 xpo7 "exportin 7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A1A4I8 XPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1929705 Xpo7 "exportin 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UIA9 XPO7 "Exportin-7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RH14 XPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E7ESC6 XPO7 "Exportin-7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LQM9 F1LQM9 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LJC4 XPO7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9GQN0 | RBP16_DROME | No assigned EC number | 0.3813 | 0.9447 | 0.9344 | yes | no |
| Q9EPK7 | XPO7_MOUSE | No assigned EC number | 0.4283 | 0.9548 | 0.9540 | yes | no |
| Q5ZLT0 | XPO7_CHICK | No assigned EC number | 0.4301 | 0.9484 | 0.9475 | yes | no |
| Q54DN3 | XPO7_DICDI | No assigned EC number | 0.3479 | 0.8701 | 0.9384 | yes | no |
| Q9UIA9 | XPO7_HUMAN | No assigned EC number | 0.4280 | 0.9521 | 0.9512 | yes | no |
| Q5R9G4 | XPO7_PONAB | No assigned EC number | 0.4271 | 0.9521 | 0.9512 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | fgenesh4_pm.C_LG_I000067 | hypothetical protein (1049 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1086 | |||
| KOG1410 | 1082 | consensus Nuclear transport receptor RanBP16 (impo | 100.0 | |
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 100.0 | |
| KOG4541 | 748 | consensus Nuclear transport receptor exportin 4 (i | 100.0 | |
| KOG2020 | 1041 | consensus Nuclear transport receptor CRM1/MSN5 (im | 100.0 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 99.85 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 99.77 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 99.75 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.23 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.19 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 98.99 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.63 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 98.58 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.41 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.89 | |
| PF03810 | 77 | IBN_N: Importin-beta N-terminal domain; InterPro: | 97.82 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 96.42 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 95.8 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 94.62 | |
| KOG4541 | 748 | consensus Nuclear transport receptor exportin 4 (i | 94.49 |
| >KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-204 Score=1666.56 Aligned_cols=1041 Identities=50% Similarity=0.841 Sum_probs=996.4
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh-cccChhhhhh
Q 001397 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLD 79 (1086)
Q Consensus 1 ~~~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~-~~l~~~~~~~ 79 (1086)
|+++++||.+|+.+|.++|+.+|.+||+.|.+|.++|+++++|+.+|++++.||.++.|++.|.|.+.+ +.+|.+||.+
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrld 80 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLD 80 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 7799999999
Q ss_pred hhhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh----hh
Q 001397 80 ISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD----RF 155 (1086)
Q Consensus 80 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~w~~~~----~~ 155 (1086)
|| +|++||+.+++|++++||..++++++|+++|.||+|.. +|
T Consensus 81 ir----------------------------------~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F 126 (1082)
T KOG1410|consen 81 IR----------------------------------NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF 126 (1082)
T ss_pred HH----------------------------------HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh
Confidence 99 99999999999999999999999999999999999864 78
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCCCCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhh-----hhh
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK-----SDV 230 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~-----~~~ 230 (1086)
|+.++++++|++.++.+|+++|+.||+.+++||++.+.+.+..+|||++.+|||+.|.+||.+++.+|+... ++.
T Consensus 127 Rd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~ 206 (1082)
T KOG1410|consen 127 RDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRA 206 (1082)
T ss_pred hhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHh
Confidence 999999999998778999999999999999999999999999999999999999999999999999999875 333
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhccc
Q 001397 231 ASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVR 310 (1086)
Q Consensus 231 ~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~ 310 (1086)
+..+..++|++.++||+|||+|++.||++||..+||+|.+||..+.|++++++||++|...+|+++..+|.||+|+||+|
T Consensus 207 q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvR 286 (1082)
T KOG1410|consen 207 QLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVR 286 (1082)
T ss_pred HhhHHHHHHHHHhhhccccccccccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhc
Q 001397 311 RSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSW 390 (1086)
Q Consensus 311 ~s~f~~~~~~~~~l~~~~~~i~~il~~~~~l~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~~l~~~ 390 (1086)
|++|++ .+|.+|++++++|++.++++++|++|+.+||+|||+++|+++||++.+|+++++|++||+.+|.||+.+++.|
T Consensus 287 RsLFN~-aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~w 365 (1082)
T KOG1410|consen 287 RSLFNG-AERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHW 365 (1082)
T ss_pred HHHhCC-HHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhh
Confidence 999965 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHHhhcccCCcCCCCcchhhhhHHHHHHHHHhhhhcccccccCCCCCCCCCCcHHHHHHHHhhhhhh
Q 001397 391 QWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYL 470 (1086)
Q Consensus 391 ~~~~~s~~~LL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi~srl~~~~~~~~ee~~e~~~~d~~~~~~~le~i~~l 470 (1086)
.|++||.+|||.+|.+|+.++||++++.|+.++.|+|+|.++||.||++.++.+++|+ .|+|+||.+...+++|+++++
T Consensus 366 efa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~y~PeIt~afi~SRl~sV~~ivrd~-~d~PLdd~~~~~q~le~l~~i 444 (1082)
T KOG1410|consen 366 EFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDTYCPEITKAFITSRLQSVEIIVRDG-LDDPLDDTGAVQQQLEQLATI 444 (1082)
T ss_pred hcccchhHHHHHHHHHHHhcCCcccCCChHHHhhhcHHHHHHHHHHHhhhhheecccC-CCCcchhhHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999988777766 689999999999999999999
Q ss_pred hccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHhccccccCCCccchhhhchHHHHHHH
Q 001397 471 CRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVL 550 (1086)
Q Consensus 471 ~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~ 550 (1086)
+||.|+.|+.+|.++||+..+.|++....+..++..+.+.|++|.|+|+++|.+++|+ .+.++.++++++|++|+++|+
T Consensus 445 cRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk-~t~~Std~~d~mDgEL~arvl 523 (1082)
T KOG1410|consen 445 CRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGK-TTATSTDEHDAMDGELSARVL 523 (1082)
T ss_pred hhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcce-ecccccchhhhhhhHHHHHHH
Confidence 9999999999999999999999998765544466777888999999999999999999 445678899999999999999
Q ss_pred HHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccC
Q 001397 551 QLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKC 630 (1086)
Q Consensus 551 ~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~ 630 (1086)
++++++|.+. +..+.+|++.|++||+++|+|+|+|++.+++ +|+|.+++|.+|+.|...++++|++||.+||++
T Consensus 524 ql~nlmdsr~-----~~~~n~rle~ail~f~eqFRk~YvgDQ~~rs-SkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~ 597 (1082)
T KOG1410|consen 524 QLVNLMDSRL-----PLKGNERLELAILHFLEQFRKAYVGDQIQRS-SKVYARLSEVLGITDESDVLGVIVGKILTNLKY 597 (1082)
T ss_pred HHHHhhhccc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Confidence 9999998755 4556799999999999999999999998875 679999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhcchhhhhhhhcchhHHHHHHhcccCCCCccccc---ccchhhHHHHHHHHHHHhcC--CCh
Q 001397 631 YTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY---RCSRSRTTFYYTIGWLIFME--ESP 705 (1086)
Q Consensus 631 ~~~~~~vi~~al~Ll~~l~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~l~~~---~~~~~r~~~~~al~~l~~~~--~~~ 705 (1086)
|+..++|+..+++||.+|+.|++..|+++++|.|+.+++||++++|||++.. +..|+||+||.|+|++++.| +.+
T Consensus 598 w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede 677 (1082)
T KOG1410|consen 598 WGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDE 677 (1082)
T ss_pred ccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccH
Confidence 9999999999999999999999999999999999999999999999999866 66899999999999999987 457
Q ss_pred HHHHHhhHHHHHHHHHhc-cCCCcccccHHHHHHHHHHHHHhhhHhhhhccchhHHHHHHHHhhhhhHHHHHhhhhhcCC
Q 001397 706 VKFKSSMDPLLQVFISLE-STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDT 784 (1086)
Q Consensus 706 ~~~~~~l~pl~~~~~~l~-~~~~~~~~~~~~~~~ii~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~ll~~y~~~ 784 (1086)
..|++||.|+++.|..+. .-+++.++.+++|..++|++||+||||.|.+.+.+|.++|+|+||.++|++...++.|.++
T Consensus 678 ~~fe~fm~PLt~~fe~v~~~~~nn~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~ 757 (1082)
T KOG1410|consen 678 DMFERFMLPLTDAFEGVLQVFQNNCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGC 757 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCC
Confidence 799999999999999775 2223569999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhcccceeeccCCChhhHHHHHHHHHHHHHHHHhhccCCC--cchhhhhhhhhHHHHHHHHHHhHh
Q 001397 785 PEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPN--AADIYAYKYKGMWICFTILARALA 862 (1086)
Q Consensus 785 ~~v~~~iLkl~~e~v~nk~~rl~f~~~s~~~~~Lf~~~~~ll~~y~~~~l~~~~--~~~~~~e~~k~l~~ll~il~~~ls 862 (1086)
|++++|||||++|+++||+||+.|+.+||||++|||+++|++..||.++++.|. +...|+++||+|.+|+.+|+++++
T Consensus 758 p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~ 837 (1082)
T KOG1410|consen 758 PDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALS 837 (1082)
T ss_pred CccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999884 455799999999999999999999
Q ss_pred CCccccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhh
Q 001397 863 GNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGL 942 (1086)
Q Consensus 863 ~~~vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl 942 (1086)
|+|||||||++|||+++.+++..+++|+++||..|+++|||+.++||.|+|.+++.|+.++.+|+++.|..++.||..|+
T Consensus 838 GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGL 917 (1082)
T KOG1410|consen 838 GNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGL 917 (1082)
T ss_pred cCccccceeeeeCchHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHhHHHHHHHHHHHHHHHhhccCCCC-----CChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcchh
Q 001397 943 KGLDTNISSQCAAAVDNLAAFYFNNITMGEAP-----TSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSR 1017 (1086)
Q Consensus 943 ~~~~~~I~~~~l~~l~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s~ 1017 (1086)
++.|+.|+..||.++|++++|+|+++.++..| ..|.+.+++.++++||+++++||+.++++++|+||++||++||
T Consensus 918 t~lDt~v~ssccsslD~i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQWSlSR 997 (1082)
T KOG1410|consen 918 TSLDTIVSSSCCSSLDTIVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQWSLSR 997 (1082)
T ss_pred chhhHHHHhHHHHHHHHHHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccccccc
Confidence 99999999999999999999999998877666 4589999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1018 PMLSLILISEQVFSDLKAQILTSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1018 ~L~~LI~~~~~~f~~l~~~li~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
||++||++++++|..++.+|+++||+++|+++..||++||+||+.+++.||||+||+|+..||++|+
T Consensus 998 PlLgLILi~E~~fSdlk~~l~ssQp~dkqq~l~~cF~~LM~~ve~nL~~KNrD~FTQNLt~FRrdv~ 1064 (1082)
T KOG1410|consen 998 PLLGLILINEKYFSDLKASLTSSQPYDKQQDLDMCFTNLMEGVERNLTVKNRDRFTQNLTRFRRDVA 1064 (1082)
T ss_pred hhhHHHhhhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
|
|
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope | Back alignment and domain information |
|---|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 | Back alignment and structure |
|---|
Score = 99.6 bits (247), Expect = 3e-21
Identities = 129/1105 (11%), Positives = 313/1105 (28%), Gaps = 152/1105 (13%)
Query: 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSS 62
+A L+ + Y ++ A+ L F N D + IL + P + +A S
Sbjct: 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSI 72
Query: 63 LLKQVTEH--SLALQLRLDISNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLIN 120
L K +T L R+ I N +++ C
Sbjct: 73 LDKLITRKWKLLPNDHRIGIRNFVVG--------------------MIISMCQDDEVF-- 110
Query: 121 YLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKI 180
+ Q + L ++ K W + + + E S + + + +
Sbjct: 111 -------KTQKNLINKSDLTLVQILKQEW--PQNWPEFIPELIGSSSS-SVNVCENNMIV 160
Query: 181 LNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALS 240
L L E+ + + + + QIF++ L+ +S L L
Sbjct: 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQ---VLEQGSSSSLIVATLE 217
Query: 241 LCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEAL 300
L+ L + + + + L++ + +T L
Sbjct: 218 SLLRYLHWIPYR---------------------YIYETNILELLSTKF-MTSPDTRAITL 255
Query: 301 ECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQ---------TGQGLADHDNYHEYC 351
+CL +++++ ND + + + ++I + N +
Sbjct: 256 KCLTEVSNLKIPQD-NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314
Query: 352 RLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 411
+ L F Y +E +L+ +Q + ++ + + +
Sbjct: 315 QDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVAD 374
Query: 412 PYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLC 471
+ + + +E ++ I + P+++ D E++++ + +
Sbjct: 375 LFYEPLKKHIYEEICSQLRLVIIENMV------RPEEVLVVENDEGEIVREFVKESDTIQ 428
Query: 472 RFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCT 531
++ E L + + I +++ I +I
Sbjct: 429 LYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS-WAIGSISG----- 482
Query: 532 GCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGD 591
S ++++ + +L L ++ + +K + I+ + +
Sbjct: 483 TMSEDTEKRFVVTVIKDLLDLT--------VKKRGKDNKAVVASDIMYVVGQYPRF---- 530
Query: 592 QAMHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTES-QEVIDHTLSLFLELAS 650
L H L ++ K+ + E Q++ T ++
Sbjct: 531 ------------------LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572
Query: 651 GYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEESPVKFKS 710
+ + + + + ++ L+ + TFY G +I E S +
Sbjct: 573 YHFVIQQPRESEPFIQTIIRDIQKTTADLQ----PQQVHTFYKACGIIISEERSVAERNR 628
Query: 711 SMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGI-----AMATNSRRTYGLLFDW 765
+ L+Q+ T + ++ + I A+ T+ +
Sbjct: 629 LLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688
Query: 766 LYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLN---KAQRLTFDSSSPNGILLFREV 822
+Y + L S + + + K + L + + +V
Sbjct: 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDV 748
Query: 823 SKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDA 882
K++V + ++ + + C T + + +
Sbjct: 749 VKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQG----------VILI 798
Query: 883 LDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGL 942
L + TL + D + + ++ L+V+ L L F V ++
Sbjct: 799 LQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAF 858
Query: 943 KGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFE 1002
K + ++ +L + A F + F
Sbjct: 859 KHNNRDVEVNGLQIALDLVKNIERMGNVPFA------------NEFHKNYFFIFVSETFF 906
Query: 1003 IVLFED----CGNQWSLSRPMLSLILISEQVFSDLKAQILTSQPVDQHQRLSVCFDKLMA 1058
++ D Q L ++SL+ ++ L + Q LS +++
Sbjct: 907 VLTDSDHKSGFSKQALLLMKLISLV-YDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLS 965
Query: 1059 DVARSLDSKNRDKFTQNLTVFRHEF 1083
+ L S+ F LT +
Sbjct: 966 NAFPHLTSEQIASFLSALTKQYKDL 990
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1086 | |||
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 100.0 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 100.0 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 100.0 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 100.0 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 100.0 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 100.0 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.94 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 99.76 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.66 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.61 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.37 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.93 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.41 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 91.46 |
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=540.70 Aligned_cols=902 Identities=15% Similarity=0.231 Sum_probs=616.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhccCcccHHHHHHHHhhCCChHHHHHHHHHHHHHHhh--cccChhhhhhh
Q 001397 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1086)
Q Consensus 3 ~~~~le~~~~~~y~~~~~~~r~~ae~~l~~f~~~~~~~~~~~~iL~~s~~~~~~f~a~~~L~~~i~~--~~l~~~~~~~i 80 (1086)
+++.||+++..+|+| ++++|++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|++ +.+|+++|.+|
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 589999999999987 478999999999999999999999999999999999999999999999988 67999999999
Q ss_pred hhccCCCcchhhhhhhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHhhccCCChhh
Q 001397 81 SNSCSQSTCVFAIYAFHVCVSLITYVLVLMFCSVGNYLINYLAKRGPE-----LQSFVTASLIQLLCRLTKFGWFDDDRF 155 (1086)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~v~~~l~~~~a~i~K~~w~~~~~~ 155 (1086)
| +++++|+.+.+.+ .++.+++|+++++|.|+|++||+.|+
T Consensus 105 R----------------------------------~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp- 149 (1073)
T 3gjx_A 105 K----------------------------------KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP- 149 (1073)
T ss_dssp H----------------------------------HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-
T ss_pred H----------------------------------HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-
Confidence 9 9999999864222 24677799999999999999999998
Q ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHhccCCC-CCCchHHHHhHHhhhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 001397 156 RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPN-PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRL 234 (1086)
Q Consensus 156 ~~~i~~v~~~~~~~~~~~~~~gl~ll~~lv~e~~~~~-~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l 234 (1086)
++++++.+.+ +.++.++..+|.+|..+.+|....+ ..++..+.++.+-.++.. ++.|++++..+|++... ..+
T Consensus 150 -~fi~dLv~~~-~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~---~~l 223 (1073)
T 3gjx_A 150 -TFISDIVGAS-RTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQN---APL 223 (1073)
T ss_dssp -THHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCC---HHH
T ss_pred -HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCC---HHH
Confidence 8999999887 4566788899999999999964321 113445556667788875 99999999999876432 458
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCCccccccCccccccccCcchHHHHHHHhhhcCCccHHHHHHHHHHHhcccccCC
Q 001397 235 QELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLF 314 (1086)
Q Consensus 235 ~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~P~sW~~~l~~~~~~~~lf~~y~~~~~~~~~~~l~cL~~l~sl~~s~f 314 (1086)
+..+|+++..+++|...+. +.+++++++++..+. ..+.++..|++||.++++.+.+-+
T Consensus 224 v~~~L~~L~~~~sWI~i~~---------------------i~~~~ll~~L~~~~L-~~~~~r~aA~dcL~eIv~k~~~~~ 281 (1073)
T 3gjx_A 224 VHATLETLLRFLNWIPLGY---------------------IFETKLISTLIYKFL-NVPMFRNVSLKCLTEIAGVSVSQY 281 (1073)
T ss_dssp HHHHHHHHHHHTTTSCTHH---------------------HHSSSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHSCSGGG
T ss_pred HHHHHHHHHHHHHhcCHHH---------------------hccchHHHHHHHHhc-CChHHHHHHHHHHHHHHhccccch
Confidence 8899999999999987654 566779998853332 567899999999999999753211
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccccC---------CCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHH
Q 001397 315 TNDAARSKFLAHLMTGTKEILQTGQGL---------ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLK 385 (1086)
Q Consensus 315 ~~~~~~~~~l~~~~~~i~~il~~~~~l---------~~~~~~~~~c~ll~rl~~~~~l~~L~~~~~~~~fi~~l~~fT~~ 385 (1086)
++.-...+..+++.+..+++....+ .|++....+|+++..+.++|. ..+.+.+.+.+.+...-++...
T Consensus 282 --~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~ 358 (1073)
T 3gjx_A 282 --EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLL 358 (1073)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-HHHhcCccchHHHHHHHHHHHH
Confidence 2334455666666666666543221 234556679999999888883 5555555544444444444444
Q ss_pred hhhhcccccCcHHHHHHHHHHhhcccCCcCC-----CC-----------cchhhhhHHHHH--HHHHhhhhcccccccC-
Q 001397 386 SLQSWQWASSSVYYLLGLWSRLVTSVPYLKG-----DA-----------PSLLDEFVPKIT--EGFITSRFNSVQAGFP- 446 (1086)
Q Consensus 386 ~l~~~~~~~~s~~~LL~~W~~lv~~~~~~~~-----~~-----------~~~l~~~~~~I~--~~yi~srl~~~~~~~~- 446 (1086)
+-.. .+.+.+++++++|..++..+ |.+. .. +.....|.+.+. ...+.+||++|+++..
T Consensus 359 ~s~~--~d~ei~kitf~fW~~L~~~L-~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~ 435 (1073)
T 3gjx_A 359 VSEV--EETEIFKICLEYWNHLAAEL-YRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVV 435 (1073)
T ss_dssp HTTC--SCHHHHHHHHHHHHHHHHHH-HHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEE
T ss_pred HhCC--CcHHHHHHHHHHHHHHHHHH-HhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 3322 24567899999999998865 2111 01 112222443332 3447899999987642
Q ss_pred C-CCCCC---CCCcH---HHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 001397 447 D-DLSDN---PLDNV---ELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH 519 (1086)
Q Consensus 447 e-e~~e~---~~~d~---~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~ 519 (1086)
| |.+|- ..+|. ..++.+.+++.++++++++++.+++.+.+.+. ..+++++|..++ .++|.++
T Consensus 436 e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~-------~~~~~~sW~~le----a~~~aig 504 (1073)
T 3gjx_A 436 ENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ-------VNGTEWSWKNLN----TLCWAIG 504 (1073)
T ss_dssp ECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HTSCCCCHHHHH----HHHHHHH
T ss_pred CcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------hcCCCCCHHHHh----HHHHHHH
Confidence 2 22221 12333 35567889999999999999999988888763 223456776665 8999997
Q ss_pred HH-HHHhccccccCCCccchhhhchHHHHHHHHHHhhcccccccccccccchHHHHHHHHHHHHHhhhHhhccccccchH
Q 001397 520 II-AAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSK 598 (1086)
Q Consensus 520 i~-g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~rl~~a~l~Fl~~~~~~yl~~~~~~~~~ 598 (1086)
-+ |++. ++.++ ..|+..+-.|+++.+..-. .-..+++..+++|-+.||.+....
T Consensus 505 aIag~~~----------~~~E~--~~Lp~vi~~Ll~L~e~~~~-----kd~k~~vas~i~~vlgrY~~wl~~-------- 559 (1073)
T 3gjx_A 505 SISGAMH----------EEDEK--RFLVTVIKDLLGLCEQKRG-----KDNKAIIASNIMYIVGQYPRFLRA-------- 559 (1073)
T ss_dssp HTTTSSC----------HHHHH--HHHHHHHHHHHHHHHHSCS-----HHHHHHHHHHHHHHHHHCHHHHHH--------
T ss_pred HHHCcCC----------ccccc--chHHHHHHHHhcccccccc-----cchhHHHHHHHHHHHhhhHHHHHh--------
Confidence 65 5442 22232 3466555555555532210 001233444555555555433320
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHhcchhhhhh-hhc------chhHHHHHHhc
Q 001397 599 QLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKL-LLK------LDTIKFIVANH 671 (1086)
Q Consensus 599 ~~~~~l~~~~G~~d~~~vl~~~l~ki~~nL~~~~~~~~vi~~al~Ll~~l~~~~~~~~~-l~~------~~~~~~Ll~~~ 671 (1086)
+...+...+++++.-+. ..++.|.+.|.+-|..+++ .|+. ++. .|.+..+++..
T Consensus 560 --------------h~~~L~~vl~~L~~~m~--~~~~~vq~aA~~af~~i~~---~C~~~lv~~~~~e~~p~i~~il~~~ 620 (1073)
T 3gjx_A 560 --------------HWKFLKTVVNKLFEFMH--ETHDGVQDMACDTFIKIAQ---KCRRHFVQVQVGEVMPFIDEILNNI 620 (1073)
T ss_dssp --------------CHHHHHHHHHHHHHHTT--CCSTTHHHHHHHHHHHHHH---HTGGGGTSCCTTCSSCHHHHHHTSH
T ss_pred --------------CHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHH---HHHHHHhhccccccchHHHHHHHHH
Confidence 01123333333332221 2245666666666666666 4653 332 46778888765
Q ss_pred ccCCCCcccccccchhhHHHHHHHHHHHhcCC----ChHHHHHhhHHHHHHHHHhcc----CCCcccccHHHHHHHHHHH
Q 001397 672 TREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLES----TPDSMFRTDAVKCALIGLM 743 (1086)
Q Consensus 672 ~~~~~~~l~~~~~~~~r~~~~~al~~l~~~~~----~~~~~~~~l~pl~~~~~~l~~----~~~~~~~~~~~~~~ii~ll 743 (1086)
.... .-+ + ++....+|+++|.++...+ ..++++.+|.|+.++|+++.. ++ ..+.+++..+.+..++
T Consensus 621 ~~~~-~~l--~--~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~-~~~~d~~~i~~l~~il 694 (1073)
T 3gjx_A 621 NTII-CDL--Q--PQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNV-DILKDPETVKQLGSIL 694 (1073)
T ss_dssp HHHH-TTC--C--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCG-GGGGCHHHHHHHHHHH
T ss_pred HHHH-Hhc--C--HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhccChHHHHHHHHHH
Confidence 4321 112 2 4677899999999997643 356899999999999999962 33 5677888788899999
Q ss_pred HHhhhHhhhhccchhHHHHHHHHhhhhhHHHH---Hhhhh-h-------cCCch------hHHHHHHHHHHHhhccccee
Q 001397 744 RDLRGIAMATNSRRTYGLLFDWLYPAHMPLLL---KGISH-W-------TDTPE------VTTPLLKFMAEFVLNKAQRL 806 (1086)
Q Consensus 744 ~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~---~ll~~-y-------~~~~~------v~~~iLkl~~e~v~nk~~rl 806 (1086)
+++..+|.|+.. .|...+.-++|++++++- ..+.. . ...|. +-..||||+..++.+.
T Consensus 695 ~~n~~v~~~~g~--~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~---- 768 (1073)
T 3gjx_A 695 KTNVRACKAVGH--PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS---- 768 (1073)
T ss_dssp HHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 999999999975 356666666665443321 11100 0 01111 2236677777777632
Q ss_pred eccCCChhh---HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCccccccccccCCCcHHHHH
Q 001397 807 TFDSSSPNG---ILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDAL 883 (1086)
Q Consensus 807 ~f~~~s~~~---~~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~vnfg~~~~y~D~~~~~~l 883 (1086)
..+.. .++-..+..++..|.++ .|..+ +.+.+. +++++.+.+.+.. .+.++.++
T Consensus 769 ----~~~~~v~~~~i~pl~~~vl~dY~~~---~p~~r--~~evL~----l~s~iv~k~~~~~----------~~~~~~il 825 (1073)
T 3gjx_A 769 ----NDPQMVAENFVPPLLDAVLIDYQRN---VPAAR--EPEVLS----TMAIIVNKLGGHI----------TAEIPQIF 825 (1073)
T ss_dssp ----SCHHHHHHHTSHHHHHHTHHHHHHS---CGGGC--CTHHHH----HHHHHHHHHGGGT----------GGGHHHHH
T ss_pred ----CCHHHHHHHhHHHHHHHHHHHHhcC---Ccccc--cHHHHH----HHHHHHHHHHhhc----------chhHHHHH
Confidence 11211 23445556677777652 33333 555665 4444444444332 15589999
Q ss_pred HHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHH
Q 001397 884 DIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAF 963 (1086)
Q Consensus 884 ~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~~~~I~~~~l~~l~~l~~~ 963 (1086)
+.+|++++.|..+|+.+||+++..||+|++.+++.||..+.++|++.|+.+++|+.||++|..++|+..++.++..+...
T Consensus 826 ~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 826 DAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchhcchhhhHH----HHh-------c-------
Q 001397 964 YFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLS----LIL-------I------- 1025 (1086)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~~~s~~L~~----LI~-------~------- 1025 (1086)
+.+. .+.++.+ ..+++..++..+|.+++..+|+..++....++. ++- +
T Consensus 906 ~~~~--------~~~~~~F------~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~ 971 (1073)
T 3gjx_A 906 VAQE--------EAAAQSF------YQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVN 971 (1073)
T ss_dssp HTTC--------HHHHHHH------HHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTC
T ss_pred hhcC--------hHHHHHH------HHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCc
Confidence 6321 1233333 245688899999999999999887754433332 221 0
Q ss_pred CHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001397 1026 SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1084 (1086)
Q Consensus 1026 ~~~~f~~l~~~li-~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1084 (1086)
++.+..++..+++ ++.|.-.++++..--..|.+ ..++..+|+..+..|+..+|
T Consensus 972 n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~------~~~d~~~f~~~lrDFli~~k 1025 (1073)
T 3gjx_A 972 NQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFS------LNQDIPAFKEHLRDFLVQIK 1025 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHH
Confidence 4556777776666 44554445555555555543 12457899999999998887
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1086 | |||
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 99.76 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.49 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.06 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.93 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.32 |
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.2e-17 Score=180.93 Aligned_cols=250 Identities=17% Similarity=0.259 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhhcccceeeccCCChhhH---HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhhHHHHHHHHHHhHhCCc
Q 001397 789 TPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 865 (1086)
Q Consensus 789 ~~iLkl~~e~v~nk~~rl~f~~~s~~~~---~Lf~~~~~ll~~y~~~~l~~~~~~~~~~e~~k~l~~ll~il~~~ls~~~ 865 (1086)
..+||++..+++.. ..++.+ ++-..+..++..|.++ .|..+ ++|.+. +++.+.+.+.+.+
T Consensus 47 keiLkLi~t~i~~~--------~d~~~v~~~~i~pl~~~vL~DY~~~---~p~~R--~~eVL~----l~~~ii~kl~~~~ 109 (321)
T d1w9ca_ 47 RETLKLISGWVSRS--------NDPQMVAENFVPPLLDAVLIDYQRN---VPAAR--EPEVLS----TMAIIVNKLGGHI 109 (321)
T ss_dssp HHHHHHHHHHHTTC--------SCHHHHHHHTHHHHHHHHHHHHHTS---CGGGC--CTHHHH----HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHHHHHHhC---chhhc--cHhHHH----HHHHHHHHHHHhh
Confidence 46666666666521 112221 2334444566666542 33333 555655 4555555555443
Q ss_pred cccccccccCCCcHHHHHHHHHHHhhccChhhHHhhHHhHHHHHHHHHHHHhhhhhhHhcCCHHHHHHHHHHHHHhhcCC
Q 001397 866 VNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 945 (1086)
Q Consensus 866 vnfg~~~~y~D~~~~~~l~~~l~l~l~ip~~dll~yPkl~~~~f~ll~~l~e~~~~~l~~l~~~~f~~li~sl~~gl~~~ 945 (1086)
.+.++.+++.+|++++.|..+|+.+||++|..||+||+++++.||+.+.++|++.|+.+++++.||++|.
T Consensus 110 ----------~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~ 179 (321)
T d1w9ca_ 110 ----------TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT 179 (321)
T ss_dssp ----------GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 2458899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHhhcCCCcHHHHHHHHHHHHhccCCCchh----cchhhhHH
Q 001397 946 DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW----SLSRPMLS 1021 (1086)
Q Consensus 946 ~~~I~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ll~~ll~~~~~~~~----~~s~~L~~ 1021 (1086)
+++|+..|++++..+...+.+. .+.++.+. .+++..++..+|.+++..+|+..+ .+-+.|+.
T Consensus 180 ~~~V~~~gL~~l~~ll~n~~~~--------~~~~~~F~------~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 245 (321)
T d1w9ca_ 180 MRNVADTGLQILFTLLQNVAQE--------EAAAQSFY------QTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHH------HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC--------hHHHHHHH------HHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877542 12333332 345778899999999999998876 23333343
Q ss_pred HHhc--------------CHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhhc
Q 001397 1022 LILI--------------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRV 1085 (1086)
Q Consensus 1022 LI~~--------------~~~~f~~l~~~li-~~q~~~~~~~l~~aF~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1085 (1086)
++-. ++.+-.++..+++ +.-|.-.++++...-..|.+ ...++.+|++++..|+-.+|.
T Consensus 246 ive~~~i~~~l~~~~~~~n~~~l~e~l~~lL~~~Fp~l~~~qi~~fv~~Lf~------~~~d~~~Fk~~lrDFLI~~ke 318 (321)
T d1w9ca_ 246 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS------LNQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp HHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHccccccccccccccchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH------ccCCHHHHHHHHHHHhHHhhh
Confidence 3221 1223333332222 33343333333333333322 356788999999999999883
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|