Citrus Sinensis ID: 001401

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080----
MDGSSGGSGGHRFRRIPRQSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQNQIFEGPDTDIETETRLANARRGKGEDATDDDAPSTSGRQYTDATDVSKHFGISSLPAYEPAFDWENERSLTFGQRLSETPMSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVTPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSASPSSPLAPSVSGSSSHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVHKPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTSNSKWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHRKPADGMLLGASSRSPVGEGPSSPKYSDRLSPSINNYLSEASRQEVRVSLPS
ccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEEEccccccccccccEEEEEEEEEcccccccccEEEEEcccHHHHHHHccccccEEEEEccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEccccccccccEEEccccccccccEEEEEEEEEEccccccccccEEEEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHccccc
cccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHcccEEEEEEEEEEEEccccccEEEEEEHEEHHccccEcccEEEEcccHHHHHHHcccccccEEEEccccccEEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHccccccHHHcccHHccccccccccccccccHHccccccccHHHHHHHHHHccccHHHcccccEEccEEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEEEEccccccHHHcccEEEEEEEcccccccccccccEEEccccccHHHHHHHHHHHHccccccHHHHEEEEcccccccccEEEEEEEEEEcccccccccccccEHEHHHHHHcccccccccccEEccccccccccccccccEEEccccEEEEEEEEEEEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEccc
mdgssggsgghrfrriprqslahlkldplidenleqwPHLNELVQCYRAdwvkdenkyghyesvsppsfqnqifegpdtdieTETRLANarrgkgedatdddapstsgrqytdatdvskhfgisslpayepafdwenersltfgqrlsetpmshglKISVKVLSLSfqaglvepfygticlYNRERREKLSEDFYFRVLPaemqdakisyeprgifyldapsASVCLLIQlerpateesgvtpsvysrkepvhltEREKQKLQVWSRIMPYRESFAWAIVplfdnsigavsggsaspssplapsvsgssshegvfepiskitldgklgysggSSVIVEISNLNkvkecyteeslqdpkrkvhkpvkgvLRLDIEKHQTAHAdlenisesgsvtndsidpgdratdltfskcpsngsdvpqtsnskwsygdgkeisgngsnapdfsaddfqafdfrtttrnepflQLFHCLyvypssvslsrkrNLFIRVELRkddadvrrqpleaihprepgvslqKWAHTQVAVGARMAYYHDEIkvslpavwtpmhhLLFTFFHVDLqtkleapkpvvigyaalplsthaqlrsEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYdrhtlrtsppwgSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDyafddfggrqppvypglstVWGSLARskakgyrvgpvyDDVLAMAWFFLELIVKSMALEQTRLffhglplgedippmqlrdgVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVcdhdlyvempgrdpsdrnyLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEfdaryqkpedkLYIAQLYFPLigqildempvfynlnaveKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFehrkpadgmllgassrspvgegpsspkysdrlspsiNNYLSEASRQEVRVSLPS
mdgssggsgghrfrriprqslaHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQNQIFEGPDTDIETETRLanarrgkgedatdddapstsgrqytdatdvsKHFGISSLPAYEPAFDWENERSLTFGQRLSETPMSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERpateesgvtpsvysrkepvhlterekqKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSASPSSPLAPSVSGSSSHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECyteeslqdpkrkvhkpVKGVLRLDIEKHQTAhadlenisesgsvtndSIDPGDRATDLtfskcpsngsdvpqtsnskWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYpssvslsrkrnLFIRVelrkddadvrrqpleaihprepgvslqkWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRvqqesvddaerNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHRKPADGMLLGASsrspvgegpsspkysdrlsPSINnylseasrqevrvslps
MDgssggsggHRFRRIPRQSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQNQIFEGPDTDIETETRLANARRGKGEDATDDDAPSTSGRQYTDATDVSKHFGISSLPAYEPAFDWENERSLTFGQRLSETPMSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVTPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNsigavsggsaspssplapsvsgsssHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVHKPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTSNSKWSYGDGKEISGNGSNapdfsaddfqafdfRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHRKPADGMLLGASSRSPVGEGPSSPKYSDRLSPSINNYLSEASRQEVRVSLPS
********************LAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHY**********************************************************HFGISSLPAYEPAFDWENERSLTFGQRL****MSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLE****************************KLQVWSRIMPYRESFAWAIVPLFDNSIGA*************************FEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYT*****************VLRL*****************************************************************************FQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRK******************GVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHR***************************************************
*******************************ENLEQWPHLNELVQCYRADWVKDENK***********************************************************************************************SHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEM**********GIFYLDAPSASVCLLIQLERPATEESGV*********************QVWSRIMPYRESFAWAIVPL*******************************************************************************HKPVKGVLRLDIEKH*TAHAD*********************************SDVPQTSNSKWSYGD****************DDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFF****************GYAALPLSTHAQLRSEISLPIIKELVPHY***************KNAFKLRLRLCSSLYPINERIRDFFLEYDRH*************EAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESV**AERNRFLVNYVDYAFDDFGGR**PVYPGLSTVWGSLARSKA*****GPVYDDVLAMAWFFLELIVKSMALEQTRLFFH***********QLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHR********************************INNYLSEAS***VRVS***
**********HRFRRIPRQSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQNQIFEGPDTDIETETRLA*********************QYTDATDVSKHFGISSLPAYEPAFDWENERSLTFGQRLSETPMSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVTPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIG************************GVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYT**********VHKPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKC***********NSKWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHRKPADGMLLGAS***************DRLSPSINNYLSEA***********
**********HRFRRIPRQSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQ*QIF***********************************************GI*S**AYEPAFDWENERSLTFGQRLSETPMSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVTPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSASPSSPL*********************LDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVHKPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTSNSKWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHRKPA********************K*SDRLSPSINNYLSEASRQEVR*****
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MDGSSGGSGGHRFRRIPRQSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQNQIFEGPDTDIETETRLANARRGKGEDATDDDAPSTSGRQYTDATDVSKHFGISSLPAYEPAFDWENERSLTFGQRLSETPMSHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVTPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSASPSSPLAPSVSGSSSHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVHKPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTSNSKWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLILFEHRKPADGMLLGASSRSPVGEGPSSPKYSDRLSPSINNYLSEASRQEVRVSLPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1084 2.2.26 [Sep-21-2011]
Q8BZN6 2150 Dedicator of cytokinesis yes no 0.475 0.239 0.252 2e-41
Q96BY6 2186 Dedicator of cytokinesis yes no 0.475 0.235 0.251 2e-40
Q8BIK4 2055 Dedicator of cytokinesis no no 0.454 0.239 0.270 3e-38
Q9BZ29 2069 Dedicator of cytokinesis no no 0.492 0.258 0.266 2e-37
A2AF47 2073 Dedicator of cytokinesis no no 0.649 0.339 0.224 3e-36
Q5JSL3 2073 Dedicator of cytokinesis no no 0.454 0.237 0.249 9e-35
Q96HP0 2047 Dedicator of cytokinesis no no 0.383 0.203 0.287 2e-27
Q8VDR9 2080 Dedicator of cytokinesis no no 0.466 0.243 0.248 5e-26
Q8C147 2100 Dedicator of cytokinesis no no 0.198 0.102 0.288 6e-18
Q96N67 2140 Dedicator of cytokinesis no no 0.248 0.125 0.255 2e-16
>sp|Q8BZN6|DOC10_MOUSE Dedicator of cytokinesis protein 10 OS=Mus musculus GN=Dock10 PE=1 SV=3 Back     alignment and function desciption
 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 148/585 (25%), Positives = 256/585 (43%), Gaps = 70/585 (11%)

Query: 448  DFQAFDFRTTTRNEPFLQLFHCLYVYP------SSVSLSRKRNLFIRVELRKDDADVRRQ 501
            + + F + +T    P+    + +YVYP      S    ++ RN+ + +E +  D D  + 
Sbjct: 653  EVEEFIYDSTKYCRPYRVYKNQIYVYPKHLKYDSQKCFNKARNITVCIEFKNSDDDGAK- 711

Query: 502  PLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQT 561
            P++ I+ +  G      A+T V   ++   + DE+K+ LP      HHLLF+F+H+    
Sbjct: 712  PMKCIYGKPGGPLFTSSAYTAVLHHSQNPDFSDEVKIELPTQLHGKHHLLFSFYHITCDI 771

Query: 562  KLEAPK------PVVIGYAALPLSTHAQLRS-EISLPIIKELVPHYLQ-------ETGKE 607
              +A           +GYA LPL  H Q+ S E ++PI   L P+YL        + G  
Sbjct: 772  NAKANAKKKEALETSVGYAWLPLMKHDQIASQEYNIPIATTLPPNYLSIQDPTSAKHGGS 831

Query: 608  RLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKN 667
             + +++ GK  FK+   + S++   +  +  FF +  +     S    S  + A  +L N
Sbjct: 832  DIKWVDGGKPLFKVSTFVVSTVNTQDPHVNAFFRQCQKREKDMSQSPTSSFVRACKNLLN 891

Query: 668  VDST-ALLQFLHPVLNMLLH-LIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLV 725
            VD   +++ FL  +LN L   L+ N  + +     R + +I+ +  +E +D +     + 
Sbjct: 892  VDKIHSIMSFLPIILNQLFKILVQNEEDEITATVTRVLADIVAKCHEEQLDHS-----VQ 946

Query: 726  NYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSM 785
            +Y+ + F     ++  ++  L+     L +S         +   VL  +WFF  +I+KSM
Sbjct: 947  SYIKFVFKTKSYKERTIHEELAKNLSDLLKSND-----STIVKHVLEHSWFFFAIILKSM 1001

Query: 786  ALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSL 845
            A          LP  +  P    +  +   VM L D     V  +CK+     KR N S+
Sbjct: 1002 AQHLIDTNKIQLPRAQRFPE-SYQSELDNLVMGLCD----HVIWKCKEAPEETKRANHSV 1056

Query: 846  GFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYV------- 898
              F     + ++   VF++V+ Y+  FS      L   K  FLQ VC H+ ++       
Sbjct: 1057 ARFLKRCFTFMDRGFVFKMVNNYISMFSSGEFKTLCQYKFDFLQEVCQHEHFIPLCLPIR 1116

Query: 899  --------------------EMPGRDPSD----RNYLSSVLIQEVFLTWDHDDLSQRAKA 934
                                +MP    ++    +++L  +L++EV      +D   R  A
Sbjct: 1117 SANIPDPLTPSESIRELHASDMPEYSVTNEFCRKHFLIGILLREVGFAL-QEDQDIRHLA 1175

Query: 935  ARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFY 979
              +L  L+ KH FD RY++P  +  IA LY PL G +LD MP  Y
Sbjct: 1176 LAVLKNLMAKHSFDDRYREPRKQAQIASLYMPLYGMLLDNMPRIY 1220
Potential guanine nucleotide exchange factor (GEF). GEF proteins activate some small GTPases by exchanging bound GDP for free GTP.
Mus musculus (taxid: 10090)
>sp|Q96BY6|DOC10_HUMAN Dedicator of cytokinesis protein 10 OS=Homo sapiens GN=DOCK10 PE=1 SV=3 Back     alignment and function description
>sp|Q8BIK4|DOCK9_MOUSE Dedicator of cytokinesis protein 9 OS=Mus musculus GN=Dock9 PE=1 SV=2 Back     alignment and function description
>sp|Q9BZ29|DOCK9_HUMAN Dedicator of cytokinesis protein 9 OS=Homo sapiens GN=DOCK9 PE=1 SV=2 Back     alignment and function description
>sp|A2AF47|DOC11_MOUSE Dedicator of cytokinesis protein 11 OS=Mus musculus GN=Dock11 PE=1 SV=1 Back     alignment and function description
>sp|Q5JSL3|DOC11_HUMAN Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1 SV=2 Back     alignment and function description
>sp|Q96HP0|DOCK6_HUMAN Dedicator of cytokinesis protein 6 OS=Homo sapiens GN=DOCK6 PE=1 SV=3 Back     alignment and function description
>sp|Q8VDR9|DOCK6_MOUSE Dedicator of cytokinesis protein 6 OS=Mus musculus GN=Dock6 PE=1 SV=4 Back     alignment and function description
>sp|Q8C147|DOCK8_MOUSE Dedicator of cytokinesis protein 8 OS=Mus musculus GN=Dock8 PE=1 SV=4 Back     alignment and function description
>sp|Q96N67|DOCK7_HUMAN Dedicator of cytokinesis protein 7 OS=Homo sapiens GN=DOCK7 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1084
224113875 1848 predicted protein [Populus trichocarpa] 0.986 0.578 0.866 0.0
225444565 1847 PREDICTED: dedicator of cytokinesis prot 0.988 0.579 0.879 0.0
255551315 1844 spike-1, putative [Ricinus communis] gi| 0.996 0.585 0.856 0.0
387940580 1837 spike 1 [Gossypium arboreum] 0.988 0.583 0.842 0.0
356554751 1835 PREDICTED: dedicator of cytokinesis prot 0.964 0.570 0.829 0.0
356525602 1838 PREDICTED: dedicator of cytokinesis prot 0.964 0.569 0.824 0.0
449493068 1833 PREDICTED: LOW QUALITY PROTEIN: dedicato 0.976 0.577 0.833 0.0
449444146 1838 PREDICTED: dedicator of cytokinesis prot 0.975 0.575 0.830 0.0
297800514 1830 hypothetical protein ARALYDRAFT_493252 [ 0.981 0.581 0.781 0.0
240255926 1830 guanyl-nucleotide exchange factor / GTPa 0.981 0.581 0.777 0.0
>gi|224113875|ref|XP_002316600.1| predicted protein [Populus trichocarpa] gi|222859665|gb|EEE97212.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1983 bits (5137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 936/1080 (86%), Positives = 1009/1080 (93%), Gaps = 11/1080 (1%)

Query: 11   HRFRRIPR--QSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPS 68
             RFR+IPR  QSL+HLKLDPL+DENLEQWPHLNELVQCYR DWVKDENKYGHYES+SP S
Sbjct: 13   QRFRKIPRHSQSLSHLKLDPLVDENLEQWPHLNELVQCYRTDWVKDENKYGHYESISPVS 72

Query: 69   FQNQIFEGPDTDIETETRLANARRGKGEDATDDDAPSTSGRQYTDAT---DVSKHFGISS 125
            FQNQIFEGPDTD+ETE  LAN+RR K E+ TDDD PSTSGRQ+ +A      + HFG S 
Sbjct: 73   FQNQIFEGPDTDLETEMHLANSRRNKAEETTDDDIPSTSGRQFVEAAFPDSSNSHFGESP 132

Query: 126  LPAYEPAFDWENERSLTFGQRLSETPMSH---GLKISVKVLSLSFQAGLVEPFYGTICLY 182
            LPAYEPAFDW+NERS+ FGQR+ ETP+     GLKISVKVLSLSFQAGL EPFYGTIC+Y
Sbjct: 133  LPAYEPAFDWDNERSMIFGQRIPETPLPQYDSGLKISVKVLSLSFQAGLAEPFYGTICIY 192

Query: 183  NRERREKLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVT 242
            N+ERREKLSEDFYF V+P + QDAKIS++PRGIFYLDAPS+S+CLLIQLE+PATEE GVT
Sbjct: 193  NKERREKLSEDFYFSVVPTDTQDAKISHDPRGIFYLDAPSSSICLLIQLEKPATEEGGVT 252

Query: 243  PSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSASPSSPLA 302
             SVYSRKEPVHL+EREKQKLQVWSRIMPY+ESFAW IVPLFDNSI A SGG+ASPSSPLA
Sbjct: 253  ASVYSRKEPVHLSEREKQKLQVWSRIMPYKESFAWTIVPLFDNSIAATSGGAASPSSPLA 312

Query: 303  PSVSGSSSHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVH 362
            PSVSGSSSH+GVFEP++KITLDGKLGYS GSSV+VEISNLNKVKE YTE+SLQDPKRKVH
Sbjct: 313  PSVSGSSSHDGVFEPVAKITLDGKLGYSSGSSVVVEISNLNKVKESYTEDSLQDPKRKVH 372

Query: 363  KPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTS 422
            KPVKGVLRL+IEKHQTAHA+LEN+SE+GS+TNDSID GDR  D  F+K PSNG D PQTS
Sbjct: 373  KPVKGVLRLEIEKHQTAHAELENLSETGSITNDSIDLGDRVADSAFTKSPSNGFDDPQTS 432

Query: 423  NSKWSYGDGKEISGNGSNA---PDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSL 479
             SKW+  DGKE SGN SNA   PDF+ADDFQAFDFRTTTRNEPFLQLFHCLYVYP +VSL
Sbjct: 433  GSKWNIFDGKETSGNISNARENPDFTADDFQAFDFRTTTRNEPFLQLFHCLYVYPLTVSL 492

Query: 480  SRKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVS 539
            SRKRNLFIRVELRKDD DVRRQPLEA+HPREPG SLQKWAHTQVA G R+A YHDEIK+S
Sbjct: 493  SRKRNLFIRVELRKDDVDVRRQPLEAMHPREPGTSLQKWAHTQVAAGTRVACYHDEIKLS 552

Query: 540  LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPH 599
            LPA+WTP HHLLFTFFHVDLQTKLEAPKPVVIGYA LPLSTHAQLRSEISLPI++ELVPH
Sbjct: 553  LPAIWTPSHHLLFTFFHVDLQTKLEAPKPVVIGYAVLPLSTHAQLRSEISLPIMRELVPH 612

Query: 600  YLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELL 659
            YLQE GKERLDYLEDGKN F+LRLRLCSSLYPINERIRDFF+EYDRHTLRTSPPWGSELL
Sbjct: 613  YLQEMGKERLDYLEDGKNVFRLRLRLCSSLYPINERIRDFFIEYDRHTLRTSPPWGSELL 672

Query: 660  EAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAE 719
            EAINSLKNVDSTALLQFLHP+LNMLLHLIG+GGETLQVAAFRAMVNILTRVQQESVDD E
Sbjct: 673  EAINSLKNVDSTALLQFLHPILNMLLHLIGSGGETLQVAAFRAMVNILTRVQQESVDDTE 732

Query: 720  RNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLE 779
            RNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLE
Sbjct: 733  RNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLE 792

Query: 780  LIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAK 839
            LIVKSMALEQ RLF+H LPLGED+PPMQL++GVFRC+MQLYDCLLTEVHERCKKGLSLAK
Sbjct: 793  LIVKSMALEQARLFYHSLPLGEDVPPMQLKEGVFRCIMQLYDCLLTEVHERCKKGLSLAK 852

Query: 840  RLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVE 899
            RLNSSL FFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKL FLQI+CDHDL+VE
Sbjct: 853  RLNSSLAFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLTFLQIICDHDLFVE 912

Query: 900  MPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLY 959
            MPGRDPSDRNYL+SVLIQE+FLTWDHD+LSQR+KAARILVVLLCKHEFDARYQKPEDKLY
Sbjct: 913  MPGRDPSDRNYLASVLIQELFLTWDHDELSQRSKAARILVVLLCKHEFDARYQKPEDKLY 972

Query: 960  IAQLYFPLIGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLF 1019
            IAQLYFPL+GQILDEMPVFYNLNAVEKREVLIV+++I+RNLDD SLVKAWQQSIARTRLF
Sbjct: 973  IAQLYFPLVGQILDEMPVFYNLNAVEKREVLIVILQIMRNLDDTSLVKAWQQSIARTRLF 1032

Query: 1020 FKLMEECLILFEHRKPADGMLLGASSRSPVGEGPSSPKYSDRLSPSINNYLSEASRQEVR 1079
            FKLMEECL+LFEHRKPADG+L+G+SSRSPVG+GP+SPKYSDRLSP+INNYLSEASRQEVR
Sbjct: 1033 FKLMEECLVLFEHRKPADGILMGSSSRSPVGDGPASPKYSDRLSPAINNYLSEASRQEVR 1092

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444565|ref|XP_002277136.1| PREDICTED: dedicator of cytokinesis protein 11 [Vitis vinifera] gi|297738489|emb|CBI27734.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551315|ref|XP_002516704.1| spike-1, putative [Ricinus communis] gi|223544199|gb|EEF45723.1| spike-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|387940580|gb|AFK13154.1| spike 1 [Gossypium arboreum] Back     alignment and taxonomy information
>gi|356554751|ref|XP_003545706.1| PREDICTED: dedicator of cytokinesis protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356525602|ref|XP_003531413.1| PREDICTED: dedicator of cytokinesis protein 11-like [Glycine max] Back     alignment and taxonomy information
>gi|449493068|ref|XP_004159183.1| PREDICTED: LOW QUALITY PROTEIN: dedicator of cytokinesis protein 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444146|ref|XP_004139836.1| PREDICTED: dedicator of cytokinesis protein 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297800514|ref|XP_002868141.1| hypothetical protein ARALYDRAFT_493252 [Arabidopsis lyrata subsp. lyrata] gi|297313977|gb|EFH44400.1| hypothetical protein ARALYDRAFT_493252 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240255926|ref|NP_193367.7| guanyl-nucleotide exchange factor / GTPase binding / GTP binding protein [Arabidopsis thaliana] gi|18496703|gb|AAL74193.1|AF465831_1 putative guanine nucleotide exchange factor [Arabidopsis thaliana] gi|332658333|gb|AEE83733.1| guanyl-nucleotide exchange factor / GTPase binding / GTP binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1084
TAIR|locus:2130484 1830 SPK1 "SPIKE1" [Arabidopsis tha 0.981 0.581 0.759 0.0
UNIPROTKB|F1LZL6 2146 RGD1561963 "Protein RGD1561963 0.450 0.227 0.257 2.5e-44
UNIPROTKB|F1LTB1 2148 RGD1561963 "Protein RGD1561963 0.450 0.227 0.257 2.5e-44
RGD|1561963 2189 RGD1561963 "similar to Dedicat 0.450 0.222 0.257 2.8e-44
DICTYBASE|DDB_G0275239 2621 zizC "DOCK family protein" [Di 0.395 0.163 0.258 5.6e-44
MGI|MGI:2146320 2150 Dock10 "dedicator of cytokines 0.382 0.193 0.258 4e-43
UNIPROTKB|F1PSB3 2181 DOCK10 "Uncharacterized protei 0.380 0.189 0.257 5.9e-42
UNIPROTKB|B3FL70 2180 DOCK10.2 "Dedicator of cytokin 0.381 0.189 0.262 1.7e-41
UNIPROTKB|Q96BY6 2186 DOCK10 "Dedicator of cytokines 0.381 0.189 0.262 1.7e-41
UNIPROTKB|J9P6I4 2199 DOCK10 "Uncharacterized protei 0.380 0.187 0.257 2.8e-41
TAIR|locus:2130484 SPK1 "SPIKE1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4298 (1518.0 bits), Expect = 0., P = 0.
 Identities = 815/1073 (75%), Positives = 915/1073 (85%)

Query:    12 RFRRIPRQSLAHLKLDPLIDENLEQWPHLNELVQCYRADWVKDENKYGHYESVSPPSFQN 71
             RFR++PRQ LA  KLDPL+DENLEQWPHLN+LVQCY  +WVKD NKYGHYE++ P SFQ 
Sbjct:     9 RFRKLPRQPLALPKLDPLLDENLEQWPHLNQLVQCYGTEWVKDVNKYGHYENIRPDSFQT 68

Query:    72 QIFEGPDTDIETETRLANARRGKGEDATDDDAPSTSGRQYTDATDVSKHFGISSLPAYEP 131
             QIFEGPDTD ETE RLA+AR        ++D  S SGR ++D    SKHFG   LPAYEP
Sbjct:    69 QIFEGPDTDTETEIRLASARSA----TIEEDVASISGRPFSDPGS-SKHFGQPPLPAYEP 123

Query:   132 AFDWENERSLTFGQRLSETPM---SHGLKISVKVLSLSFQAGLVEPFYGTICLYNRERRE 188
             AFDWENER++ FGQR  E+P    S GLKISV+VLSL+FQ+GLVEPF+G+I LYN+ER+E
Sbjct:   124 AFDWENERAMIFGQRTPESPAASYSSGLKISVRVLSLAFQSGLVEPFFGSIALYNQERKE 183

Query:   189 KLSEDFYFRVLPAEMQDAKISYEPRGIFYLDAPSASVCLLIQLERPATEESGVTPSVYSR 248
             KLSEDFYF++ P EMQDAK+S E RG+FYLDAPSASVCLLIQLE+ ATEE GVT SVYSR
Sbjct:   184 KLSEDFYFQIQPTEMQDAKLSSENRGVFYLDAPSASVCLLIQLEKTATEEGGVTSSVYSR 243

Query:   249 KEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNXXXXXXXXXXXXXXXXXXXXXXX 308
             KEPVHLTEREKQKLQVWSRIMPYRESFAWA+VPLFDN                       
Sbjct:   244 KEPVHLTEREKQKLQVWSRIMPYRESFAWAVVPLFDNNLTTNTGESASPSSPLAPSMTAS 303

Query:   309 XXHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVHKPVKGV 368
               H+GV+EPI+KIT DGK GYSGGSSV+VEISNLNKVKE Y+EES+QDPKRKVHKPVKGV
Sbjct:   304 SSHDGVYEPIAKITSDGKQGYSGGSSVVVEISNLNKVKESYSEESIQDPKRKVHKPVKGV 363

Query:   369 LRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTSNSKWSY 428
             LRL+IEKH+  H D E++SE+GS+ NDS+DP DR +DLT  KCPS+ S  P+   SKW+ 
Sbjct:   364 LRLEIEKHRNGHGDFEDLSENGSIINDSLDPTDRLSDLTLMKCPSSSSGGPRNGCSKWNS 423

Query:   429 GDGKEISGN-GSNXXXXXXXXXXXXXXRTTTRNEPFLQLFHCLYVYPSSVSLSRKRNLFI 487
              D K++S N  S+               +TTRNEPFL LFHCLYVYP +V+LSRKRN FI
Sbjct:   424 EDAKDVSRNLTSSCGTPDLNCYHAFDFCSTTRNEPFLHLFHCLYVYPVAVTLSRKRNPFI 483

Query:   488 RVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPM 547
             RVELRKDD D+R+QPLEAI+PREPGVSLQKW HTQVAVGAR A YHDEIKVSLPA WTP 
Sbjct:   484 RVELRKDDTDIRKQPLEAIYPREPGVSLQKWVHTQVAVGARAASYHDEIKVSLPATWTPS 543

Query:   548 HHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRSEISLPIIKELVPHYLQETGKE 607
             HHLLFTFFHVDLQTKLEAP+PVV+GYA+LPLST+   RS+ISLP+++ELVPHYLQE+ KE
Sbjct:   544 HHLLFTFFHVDLQTKLEAPRPVVVGYASLPLSTYIHSRSDISLPVMRELVPHYLQESTKE 603

Query:   608 RLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKN 667
             RLDYLEDGKN FKLRLRLCSSLYP NER+RDF LEYDRHTL+T PPWGSELL+AINSLK+
Sbjct:   604 RLDYLEDGKNIFKLRLRLCSSLYPTNERVRDFCLEYDRHTLQTRPPWGSELLQAINSLKH 663

Query:   668 VDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNY 727
             VDSTALLQFL+P+LNMLLHLIGNGGETLQVAAFRAMV+ILTRVQQ S DDA+RNRFLV Y
Sbjct:   664 VDSTALLQFLYPILNMLLHLIGNGGETLQVAAFRAMVDILTRVQQVSFDDADRNRFLVTY 723

Query:   728 VDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMAL 787
             VDY+FDDFGG QPPVYPGL+TVWGSLARSKAKGYRVGPVYDDVL+MAWFFLELIVKSMAL
Sbjct:   724 VDYSFDDFGGNQPPVYPGLATVWGSLARSKAKGYRVGPVYDDVLSMAWFFLELIVKSMAL 783

Query:   788 EQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGF 847
             EQ RL+ H LP GED+PPMQL++ VFRC+MQL+DCLLTEVHERCKKGLSLAKRLNSSL F
Sbjct:   784 EQARLYDHNLPTGEDVPPMQLKESVFRCIMQLFDCLLTEVHERCKKGLSLAKRLNSSLAF 843

Query:   848 FCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSD 907
             FCYDLL IIEP QV+ELVSLY+DKFSGVCQSVLH+CKL FLQI+ DHDL+VEMPGRDPSD
Sbjct:   844 FCYDLLYIIEPCQVYELVSLYMDKFSGVCQSVLHECKLTFLQIISDHDLFVEMPGRDPSD 903

Query:   908 RNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPL 967
             RNYLSS+LIQE+FL+ DHD+L  RAK ARILV+LLCKHEFDARYQK EDKLYIAQLYFP 
Sbjct:   904 RNYLSSILIQELFLSLDHDELPLRAKGARILVILLCKHEFDARYQKAEDKLYIAQLYFPF 963

Query:   968 IGQILDEMPVFYNLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECL 1027
             +GQILDEMPVFYNLNA EKREVLI V++IVRNLDD SLVKAWQQSIARTRL+FKLMEECL
Sbjct:   964 VGQILDEMPVFYNLNATEKREVLIGVLQIVRNLDDTSLVKAWQQSIARTRLYFKLMEECL 1023

Query:  1028 ILFEHRKPADGMLLGASSRSPVGEGPSSPKYSDRLSPSINNYLSEASRQEVRV 1080
             ILFEH+K AD +L G +SR PV EG  SPKYS+RLSP+INNYLSEASRQEVR+
Sbjct:  1024 ILFEHKKAADSILGGNNSRGPVSEGAGSPKYSERLSPAINNYLSEASRQEVRL 1076
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0051020 "GTPase binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0016192 "vesicle-mediated transport" evidence=IMP
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0070971 "endoplasmic reticulum exit site" evidence=IDA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0007020 "microtubule nucleation" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
UNIPROTKB|F1LZL6 RGD1561963 "Protein RGD1561963" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LTB1 RGD1561963 "Protein RGD1561963" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1561963 RGD1561963 "similar to Dedicator of cytokinesis protein 10 (Protein zizimin 3)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275239 zizC "DOCK family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:2146320 Dock10 "dedicator of cytokinesis 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSB3 DOCK10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B3FL70 DOCK10.2 "Dedicator of cytokinesis protein 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96BY6 DOCK10 "Dedicator of cytokinesis protein 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6I4 DOCK10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016346001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (1844 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00030153001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (1380 aa)
   •• • 0.628
GSVIVG00026738001
SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (990 aa)
   •  • 0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1084
pfam14180178 pfam14180, DOCK_C2, GTP-GDP exchange factor 3e-44
pfam14429179 pfam14429, DOCK-C2, C2 domain in Dock180 and Zizim 7e-44
cd08679178 cd08679, C2_DOCK180_related, C2 domains found in D 2e-38
cd08696179 cd08696, C2_Dock-C, C2 domains found in Dedicator 2e-19
cd08697185 cd08697, C2_Dock-D, C2 domains found in Dedicator 3e-19
>gnl|CDD|222580 pfam14180, DOCK_C2, GTP-GDP exchange factor Back     alignment and domain information 
 Score =  157 bits (399), Expect = 3e-44
 Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 8/177 (4%)

Query: 467 FHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHT 521
            + LYVYP S+  S+      RN+ + VELR  D +V  + L  I+ R  G SL   A +
Sbjct: 3   RNDLYVYPKSLKFSKQPKSKARNIVVTVELRDSDGEVLEEGLPIIYNRSSGPSLVSSAFS 62

Query: 522 QVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH 581
            V+   +   ++DE K+ LP   TP HHLLFTF+HV ++ K +  +   IGYA LPL   
Sbjct: 63  SVSYHNKNPQFNDEFKLQLPLDLTPGHHLLFTFYHVSVKKKKKKVET-PIGYAFLPLLDK 121

Query: 582 -AQLRS-EISLPIIKELVPHYLQETGKERLDYLEDGKNAFKLRLRLCSSLYPINERI 636
              +R  E +LP+ KEL P YL E+    + +L++GK  FK+  RLCS++Y  +  +
Sbjct: 122 GGFIRDGEHTLPVYKELPPGYLSESTSPNMKWLDNGKPVFKVSTRLCSTVYTQDPTL 178

Dock proteins are atypical GTP-GDP exchange factors for the small GTPases Pac and Cdc42, and are implicated in biological roles related to cell-migration and phagocytosis. Length = 178
>gnl|CDD|222746 pfam14429, DOCK-C2, C2 domain in Dock180 and Zizimin proteins Back     alignment and domain information
>gnl|CDD|176061 cd08679, C2_DOCK180_related, C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins Back     alignment and domain information
>gnl|CDD|176078 cd08696, C2_Dock-C, C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins Back     alignment and domain information
>gnl|CDD|176079 cd08697, C2_Dock-D, C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1084
cd08696179 C2_Dock-C C2 domains found in Dedicator Of CytoKin 100.0
cd08697185 C2_Dock-D C2 domains found in Dedicator Of CytoKin 100.0
KOG1997 1518 consensus PH domain-containing protein [Signal tra 100.0
PF14429184 DOCK-C2: C2 domain in Dock180 and Zizimin proteins 100.0
cd08679178 C2_DOCK180_related C2 domains found in Dedicator O 100.0
cd08694196 C2_Dock-A C2 domains found in Dedicator Of CytoKin 100.0
cd08695189 C2_Dock-B C2 domains found in Dedicator Of CytoKin 100.0
KOG1998 1548 consensus Signaling protein DOCK180 [Signal transd 99.95
KOG1997 1518 consensus PH domain-containing protein [Signal tra 99.79
PF1187898 DUF3398: Domain of unknown function (DUF3398); Int 99.34
PF00792142 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I 93.5
cd04013146 C2_SynGAP_like C2 domain present in Ras GTPase act 88.3
cd08408138 C2B_Synaptotagmin-14_16 C2 domain second repeat pr 87.83
cd08384133 C2B_Rabphilin_Doc2 C2 domain second repeat present 87.39
cd00276134 C2B_Synaptotagmin C2 domain second repeat present 86.46
cd08397159 C2_PI3K_class_III C2 domain present in class III p 85.53
cd08380156 C2_PI3K_like C2 domain present in phosphatidylinos 82.56
cd04016121 C2_Tollip C2 domain present in Toll-interacting pr 82.16
cd08405136 C2B_Synaptotagmin-7 C2 domain second repeat presen 81.03
cd08403134 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe 80.89
cd08392128 C2A_SLP-3 C2 domain first repeat present in Synapt 80.61
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins Back     alignment and domain information 
Probab=100.00  E-value=2.1e-52  Score=430.89  Aligned_cols=168  Identities=32%  Similarity=0.487  Sum_probs=155.1

Q ss_pred             ceeeeEEecccccccC----ccceEEEEEEEeCCccccCCCceee-ecCCCCCCCceeEEEEEEEcCCCCcccceEEEec
Q 001401          466 LFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAI-HPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL  540 (1084)
Q Consensus       466 yrN~LYVYP~~lnFsk----aRNI~V~Ve~r~~D~~~~~~~L~~I-ygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~L  540 (1084)
                      |||+|||||++++|++    +|||+|+|+||++|++  ..+++|| ||++++ .|+++++|+|+|||++|.|+|||||+|
T Consensus         1 yrN~LYVyp~~~~f~~~~~~~rNI~V~v~l~~~d~~--~~~l~~i~~g~~~~-~~~~~~~S~V~yHnk~P~f~DEiKi~L   77 (179)
T cd08696           1 YRNLLYVYPQSLNFSNRLGSARNIAVKVQLMSGEDE--SQALPVIFKGSSPE-EFLTEAYTAVTYHNKSPDFYDEIKIKL   77 (179)
T ss_pred             CcccEEEeccEEEecCCCCCcCCEEEEEEEEeCCCC--CccceEEEeCCCCC-ccceeEEEEEEEeCCCCcccceEEEEc
Confidence            8999999999999965    7999999999998764  4689999 777666 799999999999999999999999999


Q ss_pred             CCCCCCCceEEEEEEEeeccccc-CCCCceeEEEEEeccccCCcccc-eeeEEEeeccCccccccc----cccccccccC
Q 001401          541 PAVWTPMHHLLFTFFHVDLQTKL-EAPKPVVIGYAALPLSTHAQLRS-EISLPIIKELVPHYLQET----GKERLDYLED  614 (1084)
Q Consensus       541 P~~L~~~hHLLFTFyHvs~~~K~-~~~~e~~vGyAwLPLl~~g~l~~-e~~LpV~~~lpp~YL~~~----~~p~~kwvd~  614 (1084)
                      |++++++||||||||||||++|+ +++.+++|||||+|||++|+|++ +|+|||++++||+|++..    ..|+++|+||
T Consensus        78 P~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g~L~~g~~~LpV~~~~~p~~~~~~~~~~~~~~~~~~d~  157 (179)
T cd08696          78 PADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNGRLQSGEFNLPVSLEKPPSNYSPDSPEVKLPGTKWVDN  157 (179)
T ss_pred             CCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCCEEecCCEEEEEEecCCCccccccCccccCCccEEeeC
Confidence            99999999999999999999986 56678999999999999999999 999999999999887653    2589999999


Q ss_pred             CcCeEEEEEEeecccccCchHH
Q 001401          615 GKNAFKLRLRLCSSLYPINERI  636 (1084)
Q Consensus       615 ~K~~F~V~t~lvSTv~tQD~~L  636 (1084)
                      ||++|+|++++||||||||+||
T Consensus       158 ~k~~f~v~~~~vSsv~~~d~~l  179 (179)
T cd08696         158 HKGVFSVSVEAVSSVHTQDSYL  179 (179)
T ss_pred             CeeEEEEEEEEEeeEeecCCCC
Confidence            9999999999999999999885

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins Back     alignment and domain information
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A Back     alignment and domain information
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins Back     alignment and domain information
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins Back     alignment and domain information
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins Back     alignment and domain information
>KOG1998 consensus Signaling protein DOCK180 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PF11878 DUF3398: Domain of unknown function (DUF3398); InterPro: IPR021816 This domain is functionally uncharacterised Back     alignment and domain information
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 Back     alignment and domain information
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family Back     alignment and domain information
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 Back     alignment and domain information
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain Back     alignment and domain information
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin Back     alignment and domain information
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) Back     alignment and domain information
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) Back     alignment and domain information
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) Back     alignment and domain information
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 Back     alignment and domain information
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 Back     alignment and domain information
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1084
3l4c_A220 Dedicator of cytokinesis protein 1; DOCK180, DOCK1 9e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} Length = 220 Back     alignment and structure
 Score = 94.3 bits (234), Expect = 9e-22
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 35/192 (18%)

Query: 470 LYVYPSSVSLSRK-----RNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVA 524
           +YV        +      +N+ + V +  +D          I P   G        + + 
Sbjct: 29  IYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKR---LEHVIFPG-AGDEAISEYKSVIY 84

Query: 525 VGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQL 584
              +   + + +KV++P       HL FTF H   Q   +  + +    A + L  +   
Sbjct: 85  YQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIF-ALAFVKLMRYDGT 143

Query: 585 R---SEISLPIIK------ELVPHYLQ----------------ETGKERLDYLEDGKNAF 619
                E  L + K      E    YL                     + L      K++F
Sbjct: 144 TLRDGEHDLIVYKAEAKKLEDAATYLSLPSTKAELEEKGHSATGKSMQSLGSCTISKDSF 203

Query: 620 KLRLRLCSSLYP 631
           ++   +CS+   
Sbjct: 204 QISTLVCSTKLT 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1084
3l4c_A220 Dedicator of cytokinesis protein 1; DOCK180, DOCK1 100.0
1wfm_A138 Synaptotagmin XIII; C2 domain, exocytosis, neurotr 86.25
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.2e-39  Score=340.84  Aligned_cols=172  Identities=20%  Similarity=0.253  Sum_probs=129.8

Q ss_pred             CCCCcccceeeeEEecccccccC-----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCccc
Q 001401          459 RNEPFLQLFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYH  533 (1084)
Q Consensus       459 ~~~P~t~yrN~LYVYP~~lnFsk-----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~  533 (1084)
                      +-.| ++|||+|||||.+++|++     +|||+|+||||++||+   ....|||+++|.+ +.++++|+|+|||++|.|+
T Consensus        19 vI~P-gd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~---~i~~~I~~~sg~~-~~se~~S~V~YHnk~P~w~   93 (220)
T 3l4c_A           19 SHMP-GDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGK---RLEHVIFPGAGDE-AISEYKSVIYYQVKQPRWF   93 (220)
T ss_dssp             --------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSC---BCCSCEECTTCCS-CBSCEECCCCTTCSSCCCC
T ss_pred             cccC-CCCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCC---CcccCEEcCCCCC-CceeEEEEEEEcCCCCCce
Confidence            3344 479999999999999975     7999999999998874   2456999987655 6899999999999999999


Q ss_pred             ceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccC-Cc-ccc-eeeEEEeecc------Cccccccc
Q 001401          534 DEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH-AQ-LRS-EISLPIIKEL------VPHYLQET  604 (1084)
Q Consensus       534 DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~-g~-l~~-e~~LpV~~~l------pp~YL~~~  604 (1084)
                      |||||+||++++++|||+||||||||++|++ +.|++|||||+|||++ |+ |.+ +|+|+||+.-      +..||+..
T Consensus        94 EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~d-k~E~pfg~a~lPL~~~dG~~L~DG~H~L~vyk~d~~~~~~~~~yl~lp  172 (220)
T 3l4c_A           94 ETVKVAIPIEDVNRSHLRFTFRHRSSQDSKD-KSEKIFALAFVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAATYLSLP  172 (220)
T ss_dssp             EEEEEEECTTSSTTEEEEEEEEECCCCSSCC-CCCCEEEEEEEESBCTTSCBCCSEEEEEEEEECCHHHHTCHHHHTTSC
T ss_pred             EeEEEeeChhhcCCeEEEEEEEEeccccccc-ccCCeeEEEEEEcccCCCcEEccCCEEEEEEEcccccccchhhhccCC
Confidence            9999999999999999999999999998765 3679999999999976 66 667 9999999942      13587642


Q ss_pred             c-------c---c------ccccccCCcCeEEEEEEeecccccCchHH
Q 001401          605 G-------K---E------RLDYLEDGKNAFKLRLRLCSSLYPINERI  636 (1084)
Q Consensus       605 ~-------~---p------~~kwvd~~K~~F~V~t~lvSTv~tQD~~L  636 (1084)
                      .       +   +      ........|+.|.|+|.+|||++|||..|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~f~i~t~lCSTkLTQNvdl  220 (220)
T 3l4c_A          173 STKAELEEKGHSATGKSMQSLGSCTISKDSFQISTLVCSTKLTQNVDL  220 (220)
T ss_dssp             CBHHHHHTC-------CCCEETTEEEEEEEEEEEEEEC----------
T ss_pred             CchhhhccccccccccccccccccCCCcCeEEEEeEEEecccccCCCC
Confidence            0       0   0      01123457999999999999999999865
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1084
d1uowa_157 Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 86.53
d1ugka_138 Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 85.73
d2cm5a1137 C2b-domain of rabphilin {Rat (Rattus norvegicus) [ 83.22
d1rsya_143 Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 82.88
d1w15a_138 Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 82.12
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.53  E-value=0.6  Score=43.95  Aligned_cols=91  Identities=15%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             eeeeEEecccc-ccc-----CccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEec
Q 001401          467 FHCLYVYPSSV-SLS-----RKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL  540 (1084)
Q Consensus       467 rN~LYVYP~~l-nFs-----kaRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~L  540 (1084)
                      .+.|-|+..++ ++.     +.-|..|+|.+..++..                  .....|.|.-++.+|.|+|++...+
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~------------------~~~~kT~v~~~t~nP~wne~f~F~v   85 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR------------------LKKKKTTIKKNTLNPYYNESFSFEV   85 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEE------------------EEEEECCCCCSCSSCEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcc------------------ccceecccccCCCCcccCCeEEEEe
Confidence            35677776666 232     23456677776653211                  1223466777788999999999999


Q ss_pred             CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401          541 PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST  580 (1084)
Q Consensus       541 P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~  580 (1084)
                      |..-.....|.|+.||.+--.     ....+|..+++|-.
T Consensus        86 ~~~~l~~~~l~i~v~d~~~~~-----~~~~iG~~~i~l~~  120 (157)
T d1uowa_          86 PFEQIQKVQVVVTVLDYDKIG-----KNDAIGKVFVGYNS  120 (157)
T ss_dssp             CGGGGGGCEEEEEEEECCSSS-----CCCEEEEEEEETTC
T ss_pred             cHHHcCccEEEEEEcccCCCC-----CCceeEEEEEeccc
Confidence            877666789999999964322     23579999999854
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure