Citrus Sinensis ID: 001409

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080---
MSHRNDYDDGEEFSGSENDDAFDEDMEALRRACMIIRADADDLEKTDYHHLPDAAAPSATAADEWSSDGEGDLELVRSIQNRLALSNDLCQPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFSAYDSADNNKSSVEVHESASVVASGEDKNSNNLFENRIDSCEEARNDETLTNLPQPCASSTEWHQSDECNRLSVLSQKQSSNFPKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISSSCNSRKSKDSEGTNKKLSALNYGPAENSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSLDSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVDRERERPALRPNDFIPIPMLESAFQPEEPNASKKRKRKSSRKPESGKENDDCNTQKKIKPNRCRKEAEVCSEEVLGITNSDVMDISDQQDATQKKKKVKPRSTKKKAGCGSVATEKSSKKGSKSRPSAELDESSQSILLQPPKKENQRNTNDDDNNFSLEDTDKARRQGHGIKRCNEPSGECQGLACSSCQQDASKTSKPRSKSHFKNRLQASDGDNIPLACFLHNKPKKKKLEVPKIADQPCSSNAEETMGSLLPFETVDQQSNEQPILSQMQNGEVHTCHNAGTPEDMSLCKMRSSHLKDMQIMVVSDECIGEDKVEGGVTDKVEGATTSPSEPVSEAMPDINLEDEIEACDFTLASWLNRSSLSTQSSLNNMQNVLASDMELERGDEVKGATITPHEPVREPMSNNHKDDIDDADIPLAFLRRKLKKK
cccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcc
cccccccccccccccccccHHHHHHHHHHHHHHEEcccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHcccccccHHHHccccHHHcccccccccccccccHHcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHccccccccHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHcHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHcccHccccccccccccccccccccccccccHcccccccHHHccccccccccccccccEccccccccccccHHHcccEEccccccEEEEEEcccccHcHccccccccccccccccccccccccHHHHHHHHcccccHHcccccccEEEccccccHHHHEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHcccccccccccEccccccccccccccccccccccHHHHHHHHHHHcc
mshrndyddgeefsgsenddafDEDMEALRRACMIIRAdaddlektdyhhlpdaaapsataadewssdgegDLELVRSIQNRLALsndlcqplslealctlppvvsdddeeddfETLHVIQKRFsaydsadnnkssvevhesasvvasgedknsnnlfeNRIDSCeearndetltnlpqpcasstewhqsdecnrlsvlsqkqssnfpksAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISSscnsrkskdsegtnkklsalnygpaensqvANYKmamsksplslhrkKWSKKENENLRKGIRQQFQEMMLQLSVdrfsvpegsatdtnSLDSILASIKDLEVTPEMIRdflpkvnwDQVASMYVQGRSGAECEARwlnfedplinhnpwtveEEKSLLLIIQEKGITDWFDIAAslgtnrtpfqCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLkgrtgtqcsnrwnktlhpsrerqgrwnpdedQRLIVATMLfgprnwkkiaqfvpgrtqvqCRERWvnsldpsvkrsewtEQEDLRLEAAIKEHGYCWSKVasalpsrtdnqCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVdrererpalrpndfipipmlesafqpeepnaskkrkrkssrkpesgkenddcntqkkikpnrcrkeaeVCSEevlgitnsdvmdisdqqdatqkkkkvkprstkkkagcgsvateksskkgsksrpsaeldessqsillqppkkenqrntndddnnfsledtdkarrqghgikrcnepsgecqglacsscqqdasktskprskshfknrlqasdgdniplacflhnkpkkkklevpkiadqpcssnaeetmgsllpfetvdqqsneqpilsqmqngevhtchnagtpedmslckmrsshlkDMQIMVVSdecigedkveggvtdkvegattspsepvseampdinledeIEACDFTLASwlnrsslstqSSLNNMQNVLAsdmelergdevkgatitphepvrepmsnnhkddiddadiPLAFLRRKLKKK
mshrndyddgeefsgsenddaFDEDMEALRRACMIIRADADDLEKTDYHHLPDAAAPSATAADEWSSDGEGDLELVRSIQNRLALSNDLCQPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFsaydsadnnkSSVEVHESAsvvasgedknsnnlFENRIDSCEEARNDETLTNLPQPCASSTEWHQSDECNRLSVLsqkqssnfpKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKvtgralsqkkdlrvqlissscnsrkskdsegtnkklsalnygpaenSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEgsatdtnsldSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEaygesnwqSVAStlkgrtgtqcsnrwnktlhpsrerqgrwnpdedQRLIVATMLFGPRNWKKIAQFvpgrtqvqcrerwvnsldpsvkrsewteqEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVsnfvdrererpalrpndfipipmlesafqpeepnaskkrkrkssrkpesgkenddcntqkkikpnrcrkeaeVCSEevlgitnsdvmdisdqqdatqkkkkvkprstkkkagcgsvateksskkgsksrpsaeldessqsillqppkkenqrntndddnnfsledtdkarrQGHGIKRCNEPSGECQGLACSSCQQDAsktskprskshfknrlqasdgdniPLACFLHnkpkkkklevpkIADQPCSSNAEETMGSLLPFETVDQQSNEQPILSQMQNGEVHTCHNAGTPEDMSLCKMRSSHLKDMQIMVVSDECIGEDKveggvtdkvegattspsepvseamPDINLEDEIEACDFTLASWLNRSSLSTQSSLNNMQNVLASDMELERGDEVKgatitphepvrepmsnnhkddiddadIPLAFLRRKLKKK
MSHRNDYDDGEEFSGSENDDAFDEDMEALRRACMIIRADADDLEKTDYHHLpdaaapsataadEWSSDGEGDLELVRSIQNRLALSNDLCQPLSLEALCTLPPVVSdddeeddFETLHVIQKRFSAYDSADNNKssvevhesasvvasGEDKNSNNLFENRIDSCEEARNDETLTNLPQPCASSTEWHQSDECNRLSVLSQKQSSNFPKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLIssscnsrkskdsEGTNKKLSALNYGPAENSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSLDSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVDRERERPALRPNDFIPIPMLESAFQPEEPNAskkrkrkssrkPESGKENDDCNTQKKIKPNRCRKEAEVCSEEVLGITNSDVMDISDQQDATQkkkkvkprstkkkAGCGSVATEksskkgsksRPSAELDESSQSILLQPPKKENQRNTNDDDNNFSLEDTDKARRQGHGIKRCNEPSGECQGLACSSCQQDASKTSKPRSKSHFKNRLQASDGDNIPLACFLHNkpkkkkLEVPKIADQPCSSNAEETMGSLLPFETVDQQSNEQPILSQMQNGEVHTCHNAGTPEDMSLCKMRSSHLKDMQIMVVSDECIGEDKVEGGVTDKVEGATTSPSEPVSEAMPDINLEDEIEACDFTLASWLNRSSLSTQSSLNNMQNVLASDMELERGDEVKGATITPHEPVREPMSNNHKDDIDDADIPLAFLRRKLKKK
****************************LRRACMIIRADA*********************************ELVRSIQNRLALSNDLCQPLSLEALCTL**************************************************************************************************************QVFIDAIKKNRSYQKFIRSKLTQIE*******KLKERVKILKDFQVSCRKVTGRA********************************************************************************************************DSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTL*******************************QRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVD************************************************************************************************************************************************************************************************************************IPLACFL******************************************************************************MQIMVVSDECIG**********************************EIEACDFTLASWL**********************************************************************
*********GEEFSGSENDDAFDEDMEALRRACMIIRA**********************************LELVRSI*****************************DEEDDFETLHVIQKRFSA************************************************************************************AQVFIDAIKKNRSYQKFIRSKLTQIESRIE********************************************************************QVANY**********L*RKKWSKKENENLRKGIRQQFQ******************************IKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALH*****************************************************************************************************************************************************************************************************************************************************************************************************************************MRSSHLKDMQIMVVSDECI*******************************NLEDEIEACDFTLASWLNRSSL**********NVLASDMELERGDEVKGATITP***************IDDADIPLAFLRRKL***
*****************NDDAFDEDMEALRRACMIIRADADDLEKTDYHHLPDAA**************EGDLELVRSIQNRLALSNDLCQPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFSAYD**********************DKNSNNLFENRIDSCEEARNDETLTNLPQPC**********ECNRLSVLSQKQSSNFPKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISS**************KKLSALNYGPAENSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSLDSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVDRERERPALRPNDFIPIPMLESAFQ****************************TQKKIKPNRCRKEAEVCSEEVLGITNSDVMDIS************************************************QSILLQPPKKENQRNTNDDDNNFSLEDTDKARRQGHGIKRCNE*******************************RLQASDGDNIPLACFLHNKPKKKKLEVPKIADQPCSSNAEETMGSLLPFETVDQQSNEQPILSQMQNGEVHTCHNAGTPEDMSLCKMRSSHLKDMQIMVVSDECIGEDKVEGGVTDKV*************AMPDINLEDEIEACDFTLASWLNRSSLSTQSSLNNMQNVLASDMELERGDEVKGATITPHEPVREPMSNNHKDDIDDADIPLAFLRRKLKKK
**********EEFSGSENDDAFDEDMEALRRACMIIRAD******************************EGDLELVRSIQNRLALSNDLCQPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFSAYDS*********************************DSCEEARNDETLTNLPQPCA***************V*****SSNFPKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISSS************NKKLSALNYGPAENSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLS**********************SIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEA*****************************************************************************************************************************************************************************************************************************R**ASDGDNIPLACFLHNKPKKKKLEVPKIADQ*C*********SLLPFETVDQQSNEQPILSQMQNGEVHTCHNAGTPEDMSLCKMRSSHLKDMQIMVVSDECIGEDKV********************EAMPDINLEDEIEACDFTLASWLNRSSLSTQSSLNN***VL*SD**L*R*DEVKGATITPHEPVREP******DDIDDADIPLAFLRRKLKK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSHRNDYDDGEEFSGSENDDAFDEDxxxxxxxxxxxxxxxxxxxxxDYHHLPDAAAPSATAADEWSSDGEGDLELVRSIQNRLALSNDLCQPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFSAYDSADNNKSSVEVHESASVVASGEDKNSNNLFENRIDSCEEARNDETLTNLPQPCASSTEWHQSDECNRLSVLSQKQSSNFPKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISSSCNSRKSKDSEGTNKKLSALNYGPAENSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSLDSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVDRERERPALRPNDFIPIPMLESAFQPEEPNASKKRKRKSSRKPESGKENDDCNTQKKIKPNRCRKEAEVCSEEVLGITNSDVMDISDQQDATQKKKKVKPRSTKKKAGCGSVATEKSSKKGSKSRPSAELDESSQSILLQPPKKENQRNTNDDDNNFSLEDTDKARRQGHGIKRCNEPSGECQGLACSSCQQDASKTSKPRSKSHFKNRLQASDGDNIPLACFLHNKPKKKKLEVPKIADQPCSSNAEETMGSLLPFETVDQQSNEQPILSQMQNGEVHTCHNAGTPEDMSLCKMRSSHLKDMQIMVVSDECIGEDKVEGGVTDKVEGATTSPSEPVSEAMPDINLEDEIEACDFTLASWLNRSSLSTQSSLNNMQNVLASDMELERGDEVKGATITPHEPVREPMSNNHKDDIDDADIPLAFLRRKLKKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1083 2.2.26 [Sep-21-2011]
Q54NA6855 Myb-like protein L OS=Dic yes no 0.408 0.516 0.348 7e-67
Q8BP86 1333 snRNA-activating protein yes no 0.362 0.294 0.290 1e-40
Q5SXM2 1469 snRNA-activating protein yes no 0.230 0.170 0.351 2e-36
P52550 757 Myb-related protein A OS= no no 0.144 0.207 0.436 9e-32
Q08759624 Transcriptional activator N/A no 0.133 0.232 0.452 3e-31
P10243 752 Myb-related protein A OS= no no 0.144 0.208 0.417 4e-31
P51960 751 Myb-related protein A OS= no no 0.144 0.209 0.417 5e-31
P01103641 Transcriptional activator no no 0.133 0.226 0.445 7e-31
P46200640 Transcriptional activator no no 0.133 0.226 0.438 1e-30
P10242640 Transcriptional activator no no 0.133 0.226 0.438 1e-30
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1 Back     alignment and function desciption
 Score =  256 bits (654), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 181/519 (34%), Positives = 259/519 (49%), Gaps = 77/519 (14%)

Query: 216 DAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRV 275
           + +K N+ YQ+FI+  L +IE   + N ++  + +      +  R + G    +K   + 
Sbjct: 286 NLLKINKEYQEFIKKYLQKIEEEQKRNKEMLAQARKSIHVTIGPRTIKGGGFRKKGIAKE 345

Query: 276 QL--------------------ISSSC-NSRKSKDSEGT---NKKLSALNY--------- 302
           QL                    ++ SC  +    DS G     +K   + Y         
Sbjct: 346 QLDNSDSDNGGGGNGGGFDDEYVNCSCIGTCICIDSNGQPLFKRKKPGIPYFSFEVEVDG 405

Query: 303 -----GPAENSQVANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQ-FQEMMLQLSVDR 356
                 PA+N    N ++  +  PL    ++W+KKE+E L KGI+++  Q+ + +LS D+
Sbjct: 406 VIQTHYPADNPDSENIRITKNNMPLYFKTRRWTKKESELLLKGIKEKNLQKKLYRLSEDK 465

Query: 357 FSVPE---------------GSATDTNSLDSILASIKDLE--VTPEMIRDFLPKVNWDQV 399
            S  E                +  +  + ++   SIKD +  V P M           QV
Sbjct: 466 LSKAEYEKKLKQIQRSSNNNNNNNNNINNNNNNNSIKDKQDFVAPTM-----------QV 514

Query: 400 ASMYV---QGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASL 456
            S        RS  E   RW N +DP IN  P+T EE+K LL + ++    +W  I+  L
Sbjct: 515 ISQVCVESLTRSPLEAYLRWKNHDDPSINKGPFTKEEDKKLLTLAKKYDGHEWEKISIEL 574

Query: 457 GTNRTPFQCLARYQRSLNACILRREWTKEEDEQLR--IAVEAYGES-NWQSVASTLKGRT 513
           GTNRTP  C+ RYQRSLN+ +++REWTKEEDE L   I +  +GE  +WQ +   + GRT
Sbjct: 575 GTNRTPLACIQRYQRSLNSKMMKREWTKEEDEVLAGVIKLHMHGERIDWQEITEYIPGRT 634

Query: 514 GTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRER 573
           G QC +RW+KTL PS  ++GRW+P+EDQ LI A   +G  NW  I   V GRT VQCRER
Sbjct: 635 GHQCLHRWHKTLDPSI-KKGRWSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCRER 693

Query: 574 WVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYC-WSKVASALPSRTDNQCWRRWKALHPEA 632
           + N LDP + +  WT QED RL     + G   WS VA  + +RTDNQCWRRWK L+  +
Sbjct: 694 YCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRWKQLNKSS 753

Query: 633 VPL--FLEAKKIQKTALVSNFVDRERERPALRPNDFIPI 669
             L  + E    +K   VSNF  R+ ER  L  +D I I
Sbjct: 754 NVLKDYQEKVSKKKEICVSNFSGRKHERSELTVDDVIEI 792

Dictyostelium discoideum (taxid: 44689)
>sp|Q8BP86|SNPC4_MOUSE snRNA-activating protein complex subunit 4 OS=Mus musculus GN=Snapc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4 PE=1 SV=1 Back     alignment and function description
>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1 Back     alignment and function description
>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1 Back     alignment and function description
>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2 Back     alignment and function description
>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2 Back     alignment and function description
>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1 Back     alignment and function description
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1 Back     alignment and function description
>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1083
3594914951070 PREDICTED: uncharacterized protein LOC10 0.682 0.690 0.557 0.0
297734293 1318 unnamed protein product [Vitis vinifera] 0.686 0.563 0.556 0.0
2555773521029 transcription factor, putative [Ricinus 0.640 0.674 0.529 0.0
4494329481013 PREDICTED: uncharacterized protein LOC10 0.653 0.698 0.507 0.0
3583474721046 Myb-like DNA-binding protein BAS1 [Medic 0.779 0.806 0.440 1e-180
356522844941 PREDICTED: uncharacterized protein LOC10 0.759 0.873 0.450 1e-177
356529531971 PREDICTED: uncharacterized protein LOC77 0.759 0.846 0.441 1e-177
297800086777 hypothetical protein ARALYDRAFT_354789 [ 0.656 0.915 0.455 1e-175
297830454809 MYB4R1 [Arabidopsis lyrata subsp. lyrata 0.586 0.784 0.481 1e-174
18401769847 myb domain protein 4r1 [Arabidopsis thal 0.649 0.829 0.449 1e-173
>gi|359491495|ref|XP_002278062.2| PREDICTED: uncharacterized protein LOC100268025 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/778 (55%), Positives = 543/778 (69%), Gaps = 39/778 (5%)

Query: 14  SGSENDDAFDEDMEALRRACMIIRADADDLEKTDYHHLPDAAAPSATAADEWSSDGEGDL 73
           S  +ND A DED+EALRRAC++  ++ +D   +         A ++ AA +  S+G  DL
Sbjct: 8   SDDDNDSALDEDLEALRRACILTGSNLNDRATSS------GVAATSGAASDADSEGIDDL 61

Query: 74  ELVRSIQNRLAL-SNDLCQPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFSAYDSADN 132
           ELVR+IQ R ++ S D+  PLSL+ L  LPP VSD+DE DDFE L  IQKRFSAY   D 
Sbjct: 62  ELVRNIQKRFSIPSEDVPAPLSLKPLSFLPPAVSDEDE-DDFEILRAIQKRFSAYHE-DT 119

Query: 133 NKSSVE--VHESASVVASGEDKNSNNLFENRIDSCEEARNDETLTNLPQPCASSTEWHQS 190
            KS V+  + +   V+ SG+          ++DS E+A N  +  NL    +   E H S
Sbjct: 120 PKSGVDNNLQKKEKVLDSGK---------QQVDS-EDASN--STLNLESFGSKVPENHSS 167

Query: 191 D-ECNRLSVLSQKQSSNFPKSAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERV 249
               +    L  KQ+S FPK   +F+DA+KKNRS Q+F+RSKL ++E+R+EEN KLKERV
Sbjct: 168 RLGASNFPPLLSKQTS-FPKLGHMFVDALKKNRSCQRFLRSKLIELEARLEENKKLKERV 226

Query: 250 KILKDFQVSCRKVTGRALSQKKDLRVQLISSSCNSRKSKDSEGTNKKLSALNYGPAENSQ 309
           KILKDFQVSCR+  GRALSQKKD RVQLIS     + SK+S+  +KK+SA+ YGPAEN+ 
Sbjct: 227 KILKDFQVSCRRRMGRALSQKKDARVQLISLP-KLKASKNSKVNDKKVSAIYYGPAENAH 285

Query: 310 VANYKMAMSKSPLSLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNS 369
           VANY+MA+++ PLS  R KWSK E +NL KGI+QQFQEM+LQ SVD FS  E S  D N 
Sbjct: 286 VANYRMALTEFPLSFTRAKWSKLEMQNLVKGIKQQFQEMLLQKSVDMFSGSERSFEDPND 345

Query: 370 LDSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPW 429
            D+I+ SI DLE+ PE IR FLPKVNW+Q+ASMYV GRS AECEARWLN EDPLINH+PW
Sbjct: 346 FDNIMGSITDLEIPPENIRLFLPKVNWEQLASMYVAGRSAAECEARWLNCEDPLINHDPW 405

Query: 430 TVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQ 489
            V E+K LL I+Q++G+  W DIA SL TNRTPFQCLARYQRSLNACIL+REWT +ED Q
Sbjct: 406 NVTEDKKLLFILQQRGLNSWIDIAVSLRTNRTPFQCLARYQRSLNACILKREWTVDEDAQ 465

Query: 490 LRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATML 549
           LR AVE +GE NWQ +AS L+GRTGTQCSNRW KTLHP+R R GRW  DED+RL VA ML
Sbjct: 466 LRTAVEDFGEGNWQLIASVLQGRTGTQCSNRWKKTLHPARHRVGRWTADEDKRLKVAVML 525

Query: 550 FGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKV 609
           FGP+ W KIA+FV GRTQVQCRERWVNSLDPS+   +WT +ED +L+AAI EHGYCWSKV
Sbjct: 526 FGPKTWTKIAEFVLGRTQVQCRERWVNSLDPSLNWGQWTGEEDAKLKAAIMEHGYCWSKV 585

Query: 610 ASALPSRTDNQCWRRWKALHPEAVPLFLEAKKIQKTALVSNFVDRERERPALRPNDFIPI 669
           A+ +P RTD+QC RRWK L P  VPL   A+KIQK AL+SNFVDRE ERPAL P DF+P+
Sbjct: 586 AACIPPRTDSQCRRRWKVLFPHEVPLLQAARKIQKVALISNFVDRESERPALGPKDFLPV 645

Query: 670 PMLESAFQPEEPNASKKRKRKSSRKPESGKENDDC--NTQKKIKPNRCRKEAEVCSEEVL 727
           P ++S  +P++   S+KRKRKS  +PE+  EN+    N  KK +  + R  AE  S+EV 
Sbjct: 646 PEMDSVSEPQK--DSQKRKRKSKVQPETEGENNAASRNVPKKKRSQKPRNGAETSSKEVP 703

Query: 728 GITNSDVMDISDQQDATQKKKKVKPRSTKKKAGCGSVATEKSSKKGSKSRPSAELDES 785
           G +N++ +D     DA  KK+K   +   +KA C     +         RPS++LD +
Sbjct: 704 GNSNANEVDKVGGDDANSKKRKRVRKPQSRKAKCSEPIQD---------RPSSDLDSA 752

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734293|emb|CBI15540.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577352|ref|XP_002529556.1| transcription factor, putative [Ricinus communis] gi|223530968|gb|EEF32825.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449432948|ref|XP_004134260.1| PREDICTED: uncharacterized protein LOC101216287 [Cucumis sativus] Back     alignment and taxonomy information
>gi|358347472|ref|XP_003637780.1| Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|355503715|gb|AES84918.1| Myb-like DNA-binding protein BAS1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356522844|ref|XP_003530053.1| PREDICTED: uncharacterized protein LOC100818474 [Glycine max] Back     alignment and taxonomy information
>gi|356529531|ref|XP_003533344.1| PREDICTED: uncharacterized protein LOC778073 [Glycine max] Back     alignment and taxonomy information
>gi|297800086|ref|XP_002867927.1| hypothetical protein ARALYDRAFT_354789 [Arabidopsis lyrata subsp. lyrata] gi|297313763|gb|EFH44186.1| hypothetical protein ARALYDRAFT_354789 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297830454|ref|XP_002883109.1| MYB4R1 [Arabidopsis lyrata subsp. lyrata] gi|297328949|gb|EFH59368.1| MYB4R1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18401769|ref|NP_566597.1| myb domain protein 4r1 [Arabidopsis thaliana] gi|9294065|dbj|BAB02022.1| unnamed protein product [Arabidopsis thaliana] gi|14268524|gb|AAK56549.1| putative transcription factor [Arabidopsis thaliana] gi|332642526|gb|AEE76047.1| myb domain protein 4r1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1083
TAIR|locus:2092687847 MYB4R1 "myb domain protein 4r1 0.563 0.720 0.479 7.2e-155
DICTYBASE|DDB_G0285373855 mybL "putative myb transcripti 0.376 0.477 0.378 2.7e-71
UNIPROTKB|F1NTS3 1234 F1NTS3 "Uncharacterized protei 0.445 0.391 0.304 1.9e-45
UNIPROTKB|F1NF27 1369 F1NF27 "Uncharacterized protei 0.363 0.287 0.326 5.4e-44
UNIPROTKB|J9JHR1633 SNAPC4 "Uncharacterized protei 0.375 0.642 0.282 3.5e-42
UNIPROTKB|J9NSI5 1400 SNAPC4 "Uncharacterized protei 0.409 0.316 0.268 2.6e-40
UNIPROTKB|E2R0V7 1425 SNAPC4 "Uncharacterized protei 0.409 0.310 0.268 2.7e-40
UNIPROTKB|D4A3C9 1331 D4A3C9 "Uncharacterized protei 0.363 0.296 0.291 7.9e-40
UNIPROTKB|F1LYZ6 1331 F1LYZ6 "Uncharacterized protei 0.363 0.296 0.291 7.9e-40
MGI|MGI:2443935 1333 Snapc4 "small nuclear RNA acti 0.362 0.294 0.293 9.3e-39
TAIR|locus:2092687 MYB4R1 "myb domain protein 4r1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 310/647 (47%), Positives = 419/647 (64%)

Query:    93 LSLEALCTLPPV-VSXXXXXXXFETLHVIQKRFSAYDSADNNKXXXXXXXXXXXXXXGED 151
             LSL    +LPP+ +S       FETL  I++RFSAY + D+                  D
Sbjct:   117 LSLSMDVSLPPIGLSDDEEDDAFETLRAIRRRFSAYKNFDSEGKFMNDSHGKKKQVHNSD 176

Query:   152 KNSNNLFENRIDSCEE-ARNDETLTNLPQPCASSTEWHQSDECNRLSVLSQKQSSNFPKS 210
                ++   +R ++CE    + +++  +P       + H               SS+FP++
Sbjct:   177 NEPSSEILSRSNTCESFPDHGKSVVTVPDS-EDVQDGHMP-----------AASSSFPEA 224

Query:   211 AQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQK 270
             A+ F+DAI++NR+YQKF+R KL +IE+ IE+N K K+ V+I+KDFQ SC+++T  AL Q+
Sbjct:   225 ARAFVDAIRRNRAYQKFLRGKLAEIEATIEQNEKHKKNVRIVKDFQASCKRITKLALCQR 284

Query:   271 KDLRVQLIXXXXXXXXXXXX--------EGTNKKLSALNYGPAENSQVANYKMAMSKSPL 322
             KD RV+LI                    EG +KK+S L  GPAEN  V NY+MA+ K P+
Sbjct:   285 KDPRVELISTRKSGPCDSSEVIGPCDSFEGNDKKISPLTLGPAENPCVENYRMALEKYPI 344

Query:   323 SLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSLDSILASIKDLEV 382
             S+ R+KWS +EN+NL KG++Q+ Q+++L  +++R S  EG+  D   +D+I  SI +LE+
Sbjct:   345 SVKRRKWSTEENKNLAKGLKQEVQKILLSEAIERSSDLEGATYD---IDTINESIGNLEI 401

Query:   383 TPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQ 442
             TPEMIR FLPK+NWD   S+ ++ RS AECEARW++ EDPLINH PWT  E+K+LL  I+
Sbjct:   402 TPEMIRQFLPKINWD---SLDIKDRSAAECEARWMSSEDPLINHGPWTAAEDKNLLRTIE 458

Query:   443 EKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNW 502
             +  +TDW DIA SLGTNRTPFQCLARYQRSLN  IL++EWT EED+QLR AVE +GE +W
Sbjct:   459 QTSLTDWVDIAVSLGTNRTPFQCLARYQRSLNPSILKKEWTAEEDDQLRTAVELFGEKDW 518

Query:   503 QSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFV 562
             QSVA+ LKGRTGTQCSNRW K+L P+R+  G W+ +ED+R+ VA  LFG +NW KI+QFV
Sbjct:   519 QSVANVLKGRTGTQCSNRWKKSLRPTRK--GTWSLEEDKRVKVAVTLFGSQNWHKISQFV 576

Query:   563 PGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCW 622
             PGRTQ QCRERW+N LDP V R +WTE+ED +L  AI EHGY WSKVA+ L  RTDNQC 
Sbjct:   577 PGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKVATNLSCRTDNQCL 636

Query:   623 RRWKALHPEAVPLFLEAKKIQKTALVSNFVDRERERPALRPNDFIPIPMLESAFQPEEPN 682
             RRWK L+P  V L  EA+++QK A V NFVDRE ERPAL  +  + +P  + + +PE P+
Sbjct:   637 RRWKRLYPHQVALLQEARRLQKEASVGNFVDRESERPALVTSPILALP--DISLEPE-PD 693

Query:   683 AXXXXXXXXXXXPESGKENDDCNTQKKIKP---NRCRKEAE-VCSEE 725
             +            +S  E      +K +K    + CR+E E VC  E
Sbjct:   694 SVALKKKRKAKQKKSDAERQPKRRRKGLKNCSGDVCRQENETVCENE 740
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009688 "abscisic acid biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0285373 mybL "putative myb transcription factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTS3 F1NTS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF27 F1NF27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHR1 SNAPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NSI5 SNAPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0V7 SNAPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4A3C9 D4A3C9 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LYZ6 F1LYZ6 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443935 Snapc4 "small nuclear RNA activating complex, polypeptide 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.913.1
annotation not avaliable (485 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1083
COG5147512 COG5147, REB1, Myb superfamily proteins, including 3e-16
COG5147512 COG5147, REB1, Myb superfamily proteins, including 4e-14
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 6e-13
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 6e-12
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 7e-12
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-11
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-11
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-11
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 3e-11
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 8e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-09
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 5e-09
PLN03091459 PLN03091, PLN03091, hypothetical protein; Provisio 1e-08
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 3e-07
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 1e-06
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 2e-06
COG5147512 COG5147, REB1, Myb superfamily proteins, including 8e-06
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-05
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 2e-05
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-05
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 9e-05
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-04
cd1165953 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d 2e-04
cd1165953 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d 3e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 4e-04
cd1165953 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d 0.004
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 82.9 bits (205), Expect = 3e-16
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 482 WTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQ 541
           W + EDE L+  V+  G +NW  VAS L   TG Q SNRWN  L+P  +++  W+ +ED+
Sbjct: 23  WKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKN-WSEEEDE 81

Query: 542 RLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKE 601
           +LI      G + W  IA +   RT  QC ER+VN+L+      +   Q     +   K 
Sbjct: 82  QLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFD---KI 137

Query: 602 HGYCWSKVASALPSRTDNQCWRRW 625
             +  ++ ++  P   +++   R 
Sbjct: 138 DPF--NENSARRPDIYEDELLERE 159

Length = 512
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II Back     alignment and domain information
>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1083
KOG0049939 consensus Transcription factor, Myb superfamily [T 100.0
KOG0049939 consensus Transcription factor, Myb superfamily [T 99.95
PLN03212249 Transcription repressor MYB5; Provisional 99.91
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.9
PLN03091459 hypothetical protein; Provisional 99.89
PLN03212249 Transcription repressor MYB5; Provisional 99.86
PLN03091459 hypothetical protein; Provisional 99.84
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.8
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.76
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.76
KOG0050617 consensus mRNA splicing protein CDC5 (Myb superfam 99.73
COG5147512 REB1 Myb superfamily proteins, including transcrip 99.67
COG5147512 REB1 Myb superfamily proteins, including transcrip 99.47
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.36
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.34
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.02
KOG0050617 consensus mRNA splicing protein CDC5 (Myb superfam 99.02
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.95
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.73
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.61
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.57
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.44
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 96.67
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 96.51
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 96.29
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 96.2
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 95.58
KOG1279506 consensus Chromatin remodeling factor subunit and 95.28
KOG1279506 consensus Chromatin remodeling factor subunit and 94.94
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 94.83
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 94.58
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.49
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.35
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 93.37
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 91.41
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 91.32
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 90.97
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 89.46
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 89.18
PLN031421033 Probable chromatin-remodeling complex ATPase chain 88.62
PLN031421033 Probable chromatin-remodeling complex ATPase chain 88.42
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 88.05
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 86.82
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 85.92
PRK13923170 putative spore coat protein regulator protein YlbO 85.89
PRK13923170 putative spore coat protein regulator protein YlbO 84.56
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 80.1
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-61  Score=548.09  Aligned_cols=394  Identities=27%  Similarity=0.472  Sum_probs=324.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCcCCCCccC
Q 001409          213 VFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISSSCNSRKSKDSEG  292 (1083)
Q Consensus       213 ~~~dAL~~Nr~YQ~vL~~kL~eIE~~L~qNr~~qeevkil~d~q~s~~r~~~~als~~k~prv~li~~~kf~~k~kd~~~  292 (1083)
                      +|+.++++|++||+||+++|.++++.|.+|+++|+++  +.++.++.    |..+.+++.|. .++  +++||+++    
T Consensus        44 t~e~~~~~n~~y~eVi~~~l~~~~~~L~~nl~~q~~l--~~~~~~~~----Ga~v~kGk~p~-~~y--m~pyFkdd----  110 (939)
T KOG0049|consen   44 TFEGLMNVNETYVEVLDSALLSVQQHLDDNLKRQQQL--KEEYRLYN----GADITKGKVPV-HLY--MPPYFKDD----  110 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh--chhhhccc----ccccccCcCCc-hhc--cCcccccc----
Confidence            4567999999999999999999999999999999996  45666553    33355566443 333  35566664    


Q ss_pred             cccccccccCCCCCCHHHHHHHHHhccCCc---cccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CCCC
Q 001409          293 TNKKLSALNYGPAENSQVANYKMAMSKSPL---SLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFS-------VPEG  362 (1083)
Q Consensus       293 ~~~K~s~~g~gPP~N~da~~~r~~le~~Pl---~l~~kkWSkkE~e~LrkaVkqqlqe~lLk~~~~r~S-------~~E~  362 (1083)
                            +.|++||+|+|+++ +++.+.++.   +...++||..|+++|+++|++++.+|+++....+..       ..-+
T Consensus       111 ------~~G~~pP~NED~re-kchq~~k~fd~~m~~~~kWt~~eKk~lr~sVk~~lL~h~~qp~~~~~~~~~~~~~~~Ss  183 (939)
T KOG0049|consen  111 ------NNGMYPPMNEDARE-KCHQVLKWFDPMMKEEKKWTPSEKKTLRTSVKNALLAHQVQPWCSRRDIVARDADITSS  183 (939)
T ss_pred             ------cCCCCCCCchhHHH-HHhccccccchhhhhcccCChHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhccccccc
Confidence                  45899999999954 555555543   456789999999999999999998887764332211       0000


Q ss_pred             C-CC--CchhhHHHHhhhcccccChH--HHhhhCCCCCHHHHHhhcCCC-CCHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Q 001409          363 S-AT--DTNSLDSILASIKDLEVTPE--MIRDFLPKVNWDQVASMYVQG-RSGAECEARWLNFEDPLINHNPWTVEEEKS  436 (1083)
Q Consensus       363 ~-~~--d~~~Ld~l~~qIkdleltpE--~irq~l~kiDW~kIA~~~lp~-RSa~ECr~RW~n~ldP~inkgkWTkEEDek  436 (1083)
                      . .+  .+..+..++..|-.+.-.+|  .+...++.|||.+|++..|.+ ||+++|+.+|+|+++|.+|+..|+.||+++
T Consensus       184 ~L~R~~~E~~l~~l~~~ia~~~~~~ee~~l~~~~d~~DW~~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~  263 (939)
T KOG0049|consen  184 NLDRRQWEMELEDLMRKIAYVREKSEEEVLTASADYVDWTAISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEK  263 (939)
T ss_pred             chhhHHHHHHHHHHHHHHHHhhhcchhhhhhccccccCHHHhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHH
Confidence            0 00  01122333334444333322  223336789999999998877 799999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCCCCCCHHHHHHHHHHHHHhC---CCChhhhhhhcCCCC
Q 001409          437 LLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYG---ESNWQSVASTLKGRT  513 (1083)
Q Consensus       437 LleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkKgkWT~EEDekLleLVek~G---~~nW~kIA~~mpGRT  513 (1083)
                      |+.++..+++.+|..||..||++|+.|||+.+|++.+. .+....||+|||.+|+.+|+.+.   +++|.+|.++|+||+
T Consensus       264 L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~-~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~  342 (939)
T KOG0049|consen  264 LKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVS-QLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRT  342 (939)
T ss_pred             HHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHH-HHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcc
Confidence            99999999999999999999999999999999998754 46679999999999999999864   679999999999999


Q ss_pred             ccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccCCCccCCCCCHHHHH
Q 001409          514 GTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDL  593 (1083)
Q Consensus       514 ~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~LdPsikkgpWT~EEDe  593 (1083)
                      ..|...||.++|+|+ .++|+||.+||.+|+.+|.+||..+|.+|...||||+..|||+||.|+|+.+.+++.||..||+
T Consensus       343 ~~qLI~R~~~~LdPs-ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~ede  421 (939)
T KOG0049|consen  343 RQQLITRFSHTLDPS-VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDE  421 (939)
T ss_pred             hhhhhhhheeccCcc-ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchH
Confidence            999999999999999 5889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC-CHHHHhhhCCCCCH---HHHHHHHHHh
Q 001409          594 RLEAAIKEHGY-CWSKVASALPSRTD---NQCWRRWKAL  628 (1083)
Q Consensus       594 kLLelVke~G~-kWskIAk~LpGRTd---~QCRnRWk~L  628 (1083)
                      .||.+|..||. +|.+||..||+||.   .-||.|+-.+
T Consensus       422 qL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~  460 (939)
T KOG0049|consen  422 QLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAA  460 (939)
T ss_pred             HHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHH
Confidence            99999999998 99999999999999   4555555544

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1083
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 2e-29
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 6e-23
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 5e-18
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 1e-17
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 5e-16
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 7e-14
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 2e-12
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 2e-12
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 7e-12
1gvd_A52 Crystal Structure Of C-Myb R2 V103l Mutant Length = 1e-07
1gv5_A52 Crystal Structure Of C-Myb R2 Length = 52 3e-07
1mbg_A53 Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 3e-07
1mbe_A53 Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53 2e-06
1mbe_A53 Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53 3e-04
1guu_A52 Crystal Structure Of C-Myb R1 Length = 52 2e-06
1guu_A52 Crystal Structure Of C-Myb R1 Length = 52 3e-04
2dim_A70 Solution Structure Of The Myb_dna-Binding Domain Of 3e-06
2d9a_A60 Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi 2e-05
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 482 WTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQ 541
           WT+EEDE+L+  VE  G  +W+ +A+ L  RT  QC +RW K L+P   + G W  +EDQ
Sbjct: 9   WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIK-GPWTKEEDQ 67
Query: 542 RLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKE 601
           R+I     +GP+ W  IA+ + GR   QCRERW N L+P VK++ WTE+ED  +  A K 
Sbjct: 68  RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127
Query: 602 HGYCWSKVASALPSRTDN 619
            G  W+++A  LP RTDN
Sbjct: 128 LGNRWAEIAKLLPGRTDN 145
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52 Back     alignment and structure
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52 Back     alignment and structure
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 Back     alignment and structure
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53 Back     alignment and structure
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53 Back     alignment and structure
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52 Back     alignment and structure
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52 Back     alignment and structure
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70 Back     alignment and structure
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1083
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 7e-66
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-29
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 2e-42
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 2e-33
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 1e-18
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 7e-09
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 2e-07
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 9e-30
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 4e-26
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 4e-16
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 1e-09
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 2e-08
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 7e-29
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 4e-12
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 4e-07
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 4e-06
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 1e-28
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 8e-23
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 1e-06
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 5e-25
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-17
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 4e-12
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 6e-09
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-08
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-20
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-18
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 1e-11
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 3e-07
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 1e-19
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 2e-17
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 1e-11
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 2e-07
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 2e-16
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 7e-13
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 1e-07
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 2e-13
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 7e-12
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 4e-09
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-11
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-10
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 4e-08
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 6e-08
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-10
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 4e-10
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 3e-05
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 2e-10
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 2e-09
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 4e-05
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 6e-04
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 4e-10
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 1e-09
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 3e-04
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 5e-10
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 9e-10
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 8e-05
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 6e-04
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-09
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 3e-09
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 5e-09
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 9e-06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 2e-09
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 4e-07
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 3e-06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 3e-04
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 3e-09
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 9e-09
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 2e-07
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 4e-05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 7e-09
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 8e-07
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 4e-06
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 2e-07
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 6e-07
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 3e-05
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 4e-07
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 1e-05
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 5e-07
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 5e-05
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 5e-07
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 6e-06
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 3e-06
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 9e-06
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 3e-06
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 4e-06
2cjj_A93 Radialis; plant development, DNA-binding protein, 6e-06
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 6e-05
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 1e-04
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 7e-04
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
 Score =  217 bits (556), Expect = 7e-66
 Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 1/152 (0%)

Query: 477 ILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWN 536
           + +  WT+EEDE+L+  VE  G  +W+ +A+ L  RT  QC +RW K L+P   + G W 
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIK-GPWT 62

Query: 537 PDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLE 596
            +EDQR+I     +GP+ W  IA+ + GR   QCRERW N L+P VK++ WTE+ED  + 
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIY 122

Query: 597 AAIKEHGYCWSKVASALPSRTDNQCWRRWKAL 628
            A K  G  W+++A  LP RTDN     W + 
Sbjct: 123 QAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1083
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-15
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-14
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-10
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 2e-07
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 8e-15
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-14
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 2e-10
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 5e-07
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 8e-15
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 8e-12
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 5e-08
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 5e-07
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 9e-05
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 4e-13
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 1e-09
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 1e-07
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 7e-05
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 2e-11
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-08
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 9e-06
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 1e-10
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 4e-10
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 4e-07
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 8e-04
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-10
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 6e-10
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 7e-07
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 3e-04
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-10
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 3e-10
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 5e-04
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 9e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 3e-10
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 6e-10
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 3e-08
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 0.002
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 3e-10
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 6e-10
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 2e-09
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-09
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-09
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-07
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 6e-04
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-09
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-09
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 4e-08
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-04
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 2e-09
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 3e-09
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 2e-08
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 2e-07
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 5e-07
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 4e-06
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 0.003
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (167), Expect = 4e-15
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 533 GRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDP 580
            RW  +ED++L       G  +WK IA ++P RT VQC+ RW   L+P
Sbjct: 2   TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1083
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.54
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.45
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.39
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.34
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.34
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.33
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.31
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.23
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.22
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.11
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.09
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.04
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.03
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.01
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.0
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.98
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.97
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.94
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.93
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.92
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.87
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.84
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.76
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.74
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.71
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.71
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.55
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.5
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.42
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.39
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.1
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.1
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 95.67
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 95.07
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 94.65
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 93.73
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 93.59
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 93.07
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 92.16
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 90.12
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 89.83
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=2.6e-16  Score=115.28  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC-----HHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8999936777999887714984-----1222100189999689999998405977669999998999999999
Q 001409          532 QGRWNPDEDQRLIVATMLFGPR-----NWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAI  599 (1083)
Q Consensus       532 KGkWT~EEDekLLeaV~kyG~~-----nWskIAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv  599 (1083)
                      ++.||++||.+|+.+|..||..     +|..||..|||||+.|||+||+++|+|.+++++||.+||..|+...
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~   73 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD   73 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9898999999999999996867677468999997868987889999999870832368888872048899886
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure