Citrus Sinensis ID: 001413
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1082 | 2.2.26 [Sep-21-2011] | |||||||
| Q941L0 | 1065 | Cellulose synthase A cata | yes | no | 0.975 | 0.991 | 0.858 | 0.0 | |
| Q84ZN6 | 1081 | Probable cellulose syntha | yes | no | 0.981 | 0.982 | 0.820 | 0.0 | |
| Q84M43 | 1073 | Probable cellulose syntha | no | no | 0.968 | 0.976 | 0.815 | 0.0 | |
| A2XN66 | 1073 | Probable cellulose syntha | N/A | no | 0.968 | 0.976 | 0.815 | 0.0 | |
| Q6AT26 | 1076 | Probable cellulose syntha | no | no | 0.963 | 0.968 | 0.708 | 0.0 | |
| A2Y0X2 | 1076 | Probable cellulose syntha | N/A | no | 0.963 | 0.968 | 0.708 | 0.0 | |
| O48946 | 1081 | Cellulose synthase A cata | no | no | 0.956 | 0.957 | 0.700 | 0.0 | |
| Q9SKJ5 | 1065 | Probable cellulose syntha | no | no | 0.953 | 0.969 | 0.681 | 0.0 | |
| Q69P51 | 1055 | Cellulose synthase A cata | no | no | 0.935 | 0.959 | 0.685 | 0.0 | |
| A2Z1C8 | 1055 | Cellulose synthase A cata | N/A | no | 0.935 | 0.959 | 0.685 | 0.0 |
| >sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1901 bits (4924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 919/1070 (85%), Positives = 989/1070 (92%), Gaps = 14/1070 (1%)
Query: 13 KSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72
K +KN+ Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQSCPQCKTRY
Sbjct: 10 KPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCPQCKTRY 69
Query: 73 KKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPK 132
K+ KGSPAI GD++EDG AD+G +FNY QK+KISERML WH+ G+GE+ P+
Sbjct: 70 KRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRGKGEEMGEPQ 124
Query: 133 YDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVD 192
YD EVSHNH+PRLT Q+ SGE SAASPE LS++S G GKR+ YS D+NQSP+ R+VD
Sbjct: 125 YDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVNQSPNRRIVD 183
Query: 193 PVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLL 252
PV GLGNVAWKERVDGWKMKQEKN P+ST QA SERGG DIDASTD+L D++LL
Sbjct: 184 PV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDASTDILADEALL 236
Query: 253 NDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEI 312
NDEARQPLSRKV IPSSRINPYRMVI LRL+IL +FL+YRI NPV NA ALWL+SVICEI
Sbjct: 237 NDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFALWLVSVICEI 296
Query: 313 WFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTA 372
WFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDPLKEPPLVTA
Sbjct: 297 WFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTA 356
Query: 373 NTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWY 432
NTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+IEPRAPEWY
Sbjct: 357 NTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWY 416
Query: 433 FAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGN 492
FA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVMQDGTPWPGN
Sbjct: 417 FAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVMQDGTPWPGN 476
Query: 493 NTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT 552
NTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT
Sbjct: 477 NTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT 536
Query: 553 NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTV 612
NGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+NDRYANRNTV
Sbjct: 537 NGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKNDRYANRNTV 596
Query: 613 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKS 672
FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L GGSRKKNSK+
Sbjct: 597 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCGGSRKKNSKA 656
Query: 673 SKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVA 732
K+ SDKKKS +H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKRFGQSAVFVA
Sbjct: 657 KKE-SDKKKSGRHTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKRFGQSAVFVA 715
Query: 733 STLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHAR 792
STLMENGGVP SAT E LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHAR
Sbjct: 716 STLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHAR 775
Query: 793 GWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLER 852
GWRSIYCMPK PAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY GRLKFLER
Sbjct: 776 GWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLER 835
Query: 853 FAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEM 912
FAYVNTTIYP+T+IPLLMYCTLPAVCL TN+FI+PQISN+ASI F+SLFLSIFATGILEM
Sbjct: 836 FAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEM 895
Query: 913 RWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTEL 972
RWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQG+LKVLAGIDTNFTVTSKASDEDGDF EL
Sbjct: 896 RWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAEL 955
Query: 973 YMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLK 1032
Y+FKWTTLLIPPTTLL++NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLK
Sbjct: 956 YLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLK 1015
Query: 1033 GLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082
GLMGRQNRTPTIVVVWS+LLASIFSLLWVR+DPFT+RVTGPD+ +CGINC
Sbjct: 1016 GLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
|
Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q6AT26|CESA1_ORYSJ Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|A2Y0X2|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q69P51|CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|A2Z1C8|CESA9_ORYSI Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1082 | ||||||
| 255582781 | 1085 | Cellulose synthase A catalytic subunit 6 | 0.988 | 0.986 | 0.917 | 0.0 | |
| 183211890 | 1084 | cellulose synthase [Betula platyphylla] | 0.988 | 0.987 | 0.917 | 0.0 | |
| 385718955 | 1081 | cellulose synthase 3 [Paeonia lactiflora | 0.987 | 0.988 | 0.903 | 0.0 | |
| 347953823 | 1067 | cellulose synthase catalytic subunit [Go | 0.977 | 0.991 | 0.908 | 0.0 | |
| 347953853 | 1067 | cellulose synthase catalytic subunit [Go | 0.977 | 0.991 | 0.908 | 0.0 | |
| 347953863 | 1067 | cellulose synthase catalytic subunit [Go | 0.977 | 0.991 | 0.908 | 0.0 | |
| 347953867 | 1067 | cellulose synthase catalytic subunit [Go | 0.977 | 0.991 | 0.908 | 0.0 | |
| 340343837 | 1080 | cellulose synthase A [Eucalyptus camaldu | 0.987 | 0.988 | 0.917 | 0.0 | |
| 429326428 | 1079 | cellulose synthase [Populus tomentosa] | 0.988 | 0.991 | 0.920 | 0.0 | |
| 347953825 | 1067 | cellulose synthase catalytic subunit [Go | 0.977 | 0.991 | 0.906 | 0.0 |
| >gi|255582781|ref|XP_002532166.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] gi|223528153|gb|EEF30219.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2010 bits (5207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 987/1076 (91%), Positives = 1026/1076 (95%), Gaps = 6/1076 (0%)
Query: 13 KSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72
K +K+VG QVCQIC DNVG T+DG+PFVAC+VCAFPVCRPCYEYERKDGNQSCPQCKTRY
Sbjct: 10 KPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQSCPQCKTRY 69
Query: 73 KKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGED-ASAP 131
K+ KGSPAILGDREED DADDGA DFNY +E QNQ+QKI+ERMLSW M YG+GED AP
Sbjct: 70 KRQKGSPAILGDREEDCDADDGAKDFNYPTETQNQRQKIAERMLSWQMNYGRGEDDVGAP 129
Query: 132 KYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIH---YSGDINQSPSI 188
KYD EVSHNHIP LT G EVSGELSAASPEH+SMASPGVG KRIH Y+ DIN SP+
Sbjct: 130 KYDKEVSHNHIPLLTNGHEVSGELSAASPEHVSMASPGVGGAKRIHTLPYAADINASPNP 189
Query: 189 RVVDPVREFGSPGLGNVAWKERVDGWKMKQE--KNVVPMSTGQATSERGGGDIDASTDVL 246
RVVDPVREFGSPGLGNVAWKERVDGWKMKQ+ KNV+PMS+GQA SERG GDIDASTDVL
Sbjct: 190 RVVDPVREFGSPGLGNVAWKERVDGWKMKQDPVKNVIPMSSGQAPSERGVGDIDASTDVL 249
Query: 247 VDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLI 306
VDDSLLNDEARQPLSRKV IPSSRINPYRMVI LRLIIL IFL+YRI NPV NA ALWLI
Sbjct: 250 VDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVTNAYALWLI 309
Query: 307 SVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKE 366
SVICEIWFAISWI DQFPKWLP+NRETYLDRLSLRY+REGEPSQLAAVDIFVSTVDPLKE
Sbjct: 310 SVICEIWFAISWILDQFPKWLPINRETYLDRLSLRYDREGEPSQLAAVDIFVSTVDPLKE 369
Query: 367 PPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEP 426
PPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEP
Sbjct: 370 PPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEP 429
Query: 427 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG 486
RAPEWYF QKIDYLKDKVQ SFVK+RRAMKREYEEFK+ INGLVAKAQKIPEEGW+MQDG
Sbjct: 430 RAPEWYFTQKIDYLKDKVQTSFVKERRAMKREYEEFKVHINGLVAKAQKIPEEGWIMQDG 489
Query: 487 TPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVR 546
TPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVR
Sbjct: 490 TPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVR 549
Query: 547 VSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRY 606
VSAVLTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGIDRNDRY
Sbjct: 550 VSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDRNDRY 609
Query: 607 ANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 666
ANRNTVFFDINLRGLDG+QGPVYVGTGCVFNRTALYGYEPPLKPKH+KPGLLSSL GGSR
Sbjct: 610 ANRNTVFFDINLRGLDGVQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLCGGSR 669
Query: 667 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQ 726
KKNSKS+KKG DKKKS KHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQ
Sbjct: 670 KKNSKSNKKGLDKKKSGKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQ 729
Query: 727 SAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTG 786
SAVFVASTLMENGGVPQSAT ETLLKEAIHVISCGYEDKT+WGSEIGWIYGSVTEDILTG
Sbjct: 730 SAVFVASTLMENGGVPQSATSETLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTG 789
Query: 787 FKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGR 846
FKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY GR
Sbjct: 790 FKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYSGR 849
Query: 847 LKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFA 906
LK+LERFAYVNTTIYP+TAIPLLMYCTLPAVCLLT+KFI+PQISNLASI FISLFLSIFA
Sbjct: 850 LKWLERFAYVNTTIYPVTAIPLLMYCTLPAVCLLTDKFIIPQISNLASIWFISLFLSIFA 909
Query: 907 TGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDED 966
TGILEMRWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQGLLKVLAGIDTNFTVTSKASDED
Sbjct: 910 TGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 969
Query: 967 GDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVH 1026
GDF ELYMFKWTTLL+PPTTLL+IN +GVVAG+S+AINSGYQSWGPLFGKLFFAFWVI+H
Sbjct: 970 GDFAELYMFKWTTLLVPPTTLLIINFIGVVAGISHAINSGYQSWGPLFGKLFFAFWVIIH 1029
Query: 1027 LYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082
LYPFLKGLMGRQNR PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC
Sbjct: 1030 LYPFLKGLMGRQNRMPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1085
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|183211890|gb|ACC59195.1| cellulose synthase [Betula platyphylla] | Back alignment and taxonomy information |
|---|
| >gi|385718955|gb|AFI71894.1| cellulose synthase 3 [Paeonia lactiflora] | Back alignment and taxonomy information |
|---|
| >gi|347953823|gb|AEP33537.1| cellulose synthase catalytic subunit [Gossypium laxum] | Back alignment and taxonomy information |
|---|
| >gi|347953853|gb|AEP33552.1| cellulose synthase catalytic subunit [Gossypium armourianum] | Back alignment and taxonomy information |
|---|
| >gi|347953863|gb|AEP33557.1| cellulose synthase catalytic subunit [Gossypium gossypioides] | Back alignment and taxonomy information |
|---|
| >gi|347953867|gb|AEP33559.1| cellulose synthase catalytic subunit [Gossypium trilobum] | Back alignment and taxonomy information |
|---|
| >gi|340343837|gb|AEK31218.1| cellulose synthase A [Eucalyptus camaldulensis] | Back alignment and taxonomy information |
|---|
| >gi|429326428|gb|AFZ78554.1| cellulose synthase [Populus tomentosa] | Back alignment and taxonomy information |
|---|
| >gi|347953825|gb|AEP33538.1| cellulose synthase catalytic subunit [Gossypium schwendimanii] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1082 | ||||||
| TAIR|locus:2156789 | 1065 | CEV1 "CONSTITUTIVE EXPRESSION | 0.975 | 0.991 | 0.815 | 0.0 | |
| TAIR|locus:2127776 | 1081 | CESA1 "cellulose synthase 1" [ | 0.954 | 0.955 | 0.671 | 0.0 | |
| TAIR|locus:2136308 | 1084 | CESA2 "cellulose synthase A2" | 0.974 | 0.972 | 0.621 | 0.0 | |
| TAIR|locus:2176090 | 1084 | CESA6 "cellulose synthase 6" [ | 0.973 | 0.971 | 0.621 | 0.0 | |
| TAIR|locus:2052576 | 1088 | CESA9 "cellulose synthase A9" | 0.973 | 0.967 | 0.611 | 0.0 | |
| TAIR|locus:2040080 | 1065 | CESA10 "cellulose synthase 10" | 0.847 | 0.861 | 0.689 | 0.0 | |
| TAIR|locus:2124167 | 985 | IRX1 "IRREGULAR XYLEM 1" [Arab | 0.801 | 0.880 | 0.669 | 0.0 | |
| TAIR|locus:2178193 | 1069 | CESA5 "cellulose synthase 5" [ | 0.463 | 0.469 | 0.666 | 0.0 | |
| TAIR|locus:2172457 | 1049 | CESA4 "cellulose synthase A4" | 0.467 | 0.482 | 0.652 | 0.0 | |
| TAIR|locus:2178935 | 1026 | IRX3 "IRREGULAR XYLEM 3" [Arab | 0.375 | 0.395 | 0.789 | 0.0 |
| TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4655 (1643.7 bits), Expect = 0., P = 0.
Identities = 873/1070 (81%), Positives = 933/1070 (87%)
Query: 13 KSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72
K +KN+ Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQSCPQCKTRY
Sbjct: 10 KPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCPQCKTRY 69
Query: 73 KKHKGSPAILXXXXXXXXXXXXXXXFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPK 132
K+ KGSPAI FNY QK+KISERML WH+ G+GE+ P+
Sbjct: 70 KRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRGKGEEMGEPQ 124
Query: 133 YDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVD 192
YD EVSHNH+PRLT Q+ SGE SAASPE LS++S G GKR+ YS D+NQSP+ R+VD
Sbjct: 125 YDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVNQSPNRRIVD 183
Query: 193 PVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLL 252
PV GLGNVAWKERVDGWKMKQEKN P+ST QA SERGG DIDASTD+L D++LL
Sbjct: 184 PV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDASTDILADEALL 236
Query: 253 NDEARQPLSRKVPIPSSRINPYRMVXXXXXXXXXXXXXXXXKNPVHNAIALWLISVICEI 312
NDEARQPLSRKV IPSSRINPYRMV NPV NA ALWL+SVICEI
Sbjct: 237 NDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFALWLVSVICEI 296
Query: 313 WFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTA 372
WFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDPLKEPPLVTA
Sbjct: 297 WFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTA 356
Query: 373 NTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWY 432
NTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+IEPRAPEWY
Sbjct: 357 NTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWY 416
Query: 433 FAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGN 492
FA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVMQDGTPWPGN
Sbjct: 417 FAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVMQDGTPWPGN 476
Query: 493 NTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT 552
NTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT
Sbjct: 477 NTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT 536
Query: 553 NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTV 612
NGPF+LNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGID+NDRYANRNTV
Sbjct: 537 NGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKNDRYANRNTV 596
Query: 613 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFXXXXXXXXXX 672
FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+K KH+KP LLS L
Sbjct: 597 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKVKHKKPSLLSKLCGGSRKKNSKA 656
Query: 673 XXXXXXXXXXXXHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVA 732
H D TVP+F+L+DIEEGVEGAGFDDEK+LLMSQMSLEKRFGQSAVFVA
Sbjct: 657 KKESDKKKSGR-HTDSTVPVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKRFGQSAVFVA 715
Query: 733 STLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHAR 792
STLMENGGVP SAT E LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHAR
Sbjct: 716 STLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHAR 775
Query: 793 GWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLER 852
GWRSIYCMPK PAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY GRLKFLER
Sbjct: 776 GWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLER 835
Query: 853 FAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEM 912
FAYVNTTIYP+T+IPLLMYCTLPAVCL TN+FI+PQISN+ASI F+SLFLSIFATGILEM
Sbjct: 836 FAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEM 895
Query: 913 RWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTEL 972
RWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQG+LKVLAGIDTNFTVTSKASDEDGDF EL
Sbjct: 896 RWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAEL 955
Query: 973 YMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLK 1032
Y+FKW ++NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLK
Sbjct: 956 YLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLK 1015
Query: 1033 GLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082
GLMGRQNRTPTIVVVWS+LLASIFSLLWVR+DPFT+RVTGPD+ +CGINC
Sbjct: 1016 GLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
|
|
| TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A2XN66 | CESA2_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.8152 | 0.9685 | 0.9767 | N/A | no |
| A2Z1C8 | CESA9_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.6853 | 0.9353 | 0.9592 | N/A | no |
| O48946 | CESA1_ARATH | 2, ., 4, ., 1, ., 1, 2 | 0.7006 | 0.9565 | 0.9574 | no | no |
| Q84M43 | CESA2_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.8152 | 0.9685 | 0.9767 | no | no |
| A2XNT2 | CESA5_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.6749 | 0.9648 | 0.9560 | N/A | no |
| A2Y0X2 | CESA1_ORYSI | 2, ., 4, ., 1, ., 1, 2 | 0.7088 | 0.9630 | 0.9684 | N/A | no |
| Q941L0 | CESA3_ARATH | 2, ., 4, ., 1, ., 1, 2 | 0.8588 | 0.9759 | 0.9915 | yes | no |
| Q6AT26 | CESA1_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.7088 | 0.9630 | 0.9684 | no | no |
| Q84ZN6 | CESA8_ORYSJ | 2, ., 4, ., 1, ., 1, 2 | 0.8200 | 0.9815 | 0.9824 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.998 |
| 4th Layer | 2.4.1.12 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pg.C_LG_IX0979 | UDP-glucose-1,4-beta-D-glucan 4-beta-D-glucosyltransferase (EC-2.4.1.12) (1079 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1082 | |||
| PLN02638 | 1079 | PLN02638, PLN02638, cellulose synthase A (UDP-form | 0.0 | |
| PLN02400 | 1085 | PLN02400, PLN02400, cellulose synthase | 0.0 | |
| PLN02436 | 1094 | PLN02436, PLN02436, cellulose synthase A | 0.0 | |
| PLN02189 | 1040 | PLN02189, PLN02189, cellulose synthase | 0.0 | |
| PLN02915 | 1044 | PLN02915, PLN02915, cellulose synthase A [UDP-form | 0.0 | |
| pfam03552 | 716 | pfam03552, Cellulose_synt, Cellulose synthase | 0.0 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 0.0 | |
| PLN02248 | 1135 | PLN02248, PLN02248, cellulose synthase-like protei | 0.0 | |
| PLN02190 | 756 | PLN02190, PLN02190, cellulose synthase-like protei | 1e-144 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 2e-93 | |
| PLN02893 | 734 | PLN02893, PLN02893, Cellulose synthase-like protei | 3e-61 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 5e-14 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 7e-13 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 1e-12 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 5e-11 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 6e-11 | |
| PLN02195 | 977 | PLN02195, PLN02195, cellulose synthase A | 6e-10 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 2e-07 | |
| TIGR03030 | 713 | TIGR03030, CelA, cellulose synthase catalytic subu | 2e-07 | |
| pfam13632 | 194 | pfam13632, Glyco_trans_2_3, Glycosyl transferase f | 1e-05 | |
| cd06423 | 180 | cd06423, CESA_like, CESA_like is the cellulose syn | 2e-05 | |
| cd06421 | 234 | cd06421, CESA_CelA_like, CESA_CelA_like are involv | 9e-05 | |
| pfam14446 | 55 | pfam14446, Prok-RING_1, Prokaryotic RING finger fa | 2e-04 | |
| PRK11498 | 852 | PRK11498, bcsA, cellulose synthase catalytic subun | 0.004 |
| >gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Score = 2309 bits (5986), Expect = 0.0
Identities = 988/1072 (92%), Positives = 1029/1072 (95%), Gaps = 2/1072 (0%)
Query: 12 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 71
K +K+ GGQVCQICGDNVGKTVDG PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT+
Sbjct: 9 AKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTK 68
Query: 72 YKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAP 131
YK+HKGSPAILGD EEDGDADDGASDFNY S NQ+QKQKI+ERMLSW M G+GED AP
Sbjct: 69 YKRHKGSPAILGDEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAP 128
Query: 132 KYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVV 191
YD EVSHNHIP LT GQ VSGELSAASPE LSMASPG G GKRI Y+ D+NQSP+IRVV
Sbjct: 129 NYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAG-GKRIPYASDVNQSPNIRVV 187
Query: 192 DPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSE-RGGGDIDASTDVLVDDS 250
DPVREFGSPGLGNVAWKERVDGWKMKQ+KN +PMSTG A SE RGGGDIDASTDVL+DD+
Sbjct: 188 DPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVLMDDA 247
Query: 251 LLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVIC 310
LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL IFL+YRI NPV NA ALWLISVIC
Sbjct: 248 LLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVIC 307
Query: 311 EIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLV 370
EIWFA+SWI DQFPKWLPVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDPLKEPPLV
Sbjct: 308 EIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLV 367
Query: 371 TANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 430
TANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE
Sbjct: 368 TANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 427
Query: 431 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWP 490
WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFK+RINGLVAKAQK+PEEGW+MQDGTPWP
Sbjct: 428 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWP 487
Query: 491 GNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAV 550
GNNTRDHPGMIQVFLG +GGLD EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAV
Sbjct: 488 GNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAV 547
Query: 551 LTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRN 610
LTNGPFLLNLDCDHYINNSKALREAMCF+MDPNLGK VCYVQFPQRFDGIDRNDRYANRN
Sbjct: 548 LTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRN 607
Query: 611 TVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNS 670
TVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP+KPKH+KPG LSSL GGSRKK+S
Sbjct: 608 TVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLCGGSRKKSS 667
Query: 671 KSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVF 730
KSSKKGSDKKKS KHVDPTVP+F+LEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVF
Sbjct: 668 KSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVF 727
Query: 731 VASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMH 790
VASTLMENGGVPQSAT E+LLKEAIHVISCGYEDKT+WGSEIGWIYGSVTEDILTGFKMH
Sbjct: 728 VASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMH 787
Query: 791 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFL 850
ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLK+L
Sbjct: 788 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWL 847
Query: 851 ERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGIL 910
ERFAYVNTTIYP+T+IPLL+YCTLPAVCLLT KFI+PQISN+ASI FISLFLSIFATGIL
Sbjct: 848 ERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGIL 907
Query: 911 EMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFT 970
EMRWSGVGIDEWWRNEQFWVIGGVS+HLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDF
Sbjct: 908 EMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFA 967
Query: 971 ELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPF 1030
ELYMFKWTTLLIPPTTLL+INLVGVVAG+SYAINSGYQSWGPLFGKLFFAFWVIVHLYPF
Sbjct: 968 ELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPF 1027
Query: 1031 LKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082
LKGLMGRQNRTPTIVVVWSILLASIFSLLWVR+DPFTTRVTGPDVEQCGINC
Sbjct: 1028 LKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079
|
Length = 1079 |
| >gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >gnl|CDD|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >gnl|CDD|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1082 | |||
| PLN02638 | 1079 | cellulose synthase A (UDP-forming), catalytic subu | 100.0 | |
| PLN02400 | 1085 | cellulose synthase | 100.0 | |
| PLN02436 | 1094 | cellulose synthase A | 100.0 | |
| PLN02915 | 1044 | cellulose synthase A [UDP-forming], catalytic subu | 100.0 | |
| PLN02189 | 1040 | cellulose synthase | 100.0 | |
| PLN02195 | 977 | cellulose synthase A | 100.0 | |
| PLN02248 | 1135 | cellulose synthase-like protein | 100.0 | |
| PF03552 | 720 | Cellulose_synt: Cellulose synthase; InterPro: IPR0 | 100.0 | |
| PLN02190 | 756 | cellulose synthase-like protein | 100.0 | |
| PLN02893 | 734 | Cellulose synthase-like protein | 100.0 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 100.0 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 100.0 | |
| PF14569 | 80 | zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. | 100.0 | |
| PRK05454 | 691 | glucosyltransferase MdoH; Provisional | 100.0 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 100.0 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 99.97 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 99.97 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 99.96 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 99.96 | |
| PRK14716 | 504 | bacteriophage N4 adsorption protein B; Provisional | 99.94 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 99.93 | |
| PRK11234 | 727 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.93 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 99.92 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 99.91 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 99.9 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 99.88 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 99.84 | |
| PRK15489 | 703 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.83 | |
| cd04190 | 244 | Chitin_synth_C C-terminal domain of Chitin Synthas | 99.83 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 99.81 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 99.8 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 99.77 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 99.74 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 99.74 | |
| COG2943 | 736 | MdoH Membrane glycosyltransferase [Cell envelope b | 99.72 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 99.66 | |
| PF13632 | 193 | Glyco_trans_2_3: Glycosyl transferase family group | 99.63 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 99.52 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 99.42 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 99.39 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 99.35 | |
| PF13506 | 175 | Glyco_transf_21: Glycosyl transferase family 21 | 99.21 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 99.19 | |
| PF03142 | 527 | Chitin_synth_2: Chitin synthase; InterPro: IPR0048 | 99.16 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 99.13 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 99.12 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 99.09 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 99.05 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 99.04 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 99.0 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 98.98 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 98.97 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 98.94 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 98.93 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 98.9 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 98.9 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 98.9 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 98.65 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 98.6 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 98.58 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 98.55 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 98.53 | |
| PRK10063 | 248 | putative glycosyl transferase; Provisional | 98.44 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 98.4 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 98.34 | |
| KOG2571 | 862 | consensus Chitin synthase/hyaluronan synthase (gly | 98.34 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 98.29 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 98.26 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 98.18 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 98.04 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 97.35 | |
| KOG2547 | 431 | consensus Ceramide glucosyltransferase [Lipid tran | 97.32 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 96.98 | |
| COG0463 | 291 | WcaA Glycosyltransferases involved in cell wall bi | 96.93 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 96.65 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 95.64 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 94.92 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 94.9 | |
| PF02364 | 817 | Glucan_synthase: 1,3-beta-glucan synthase componen | 91.14 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 87.91 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 87.79 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 86.76 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 82.88 |
| >PLN02638 cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-318 Score=2818.82 Aligned_cols=1071 Identities=92% Similarity=1.492 Sum_probs=993.1
Q ss_pred cccccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCC
Q 001413 10 AQVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~ 89 (1082)
+++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||||
T Consensus 7 ~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~ 86 (1079)
T PLN02638 7 TGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDG 86 (1079)
T ss_pred CCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999955554
Q ss_pred CCCCCcCccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCC
Q 001413 90 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPG 169 (1082)
Q Consensus 90 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1082)
|+||+||||++..+++.+.++++|+|+||+|+||++.|.++..++++.+.+++|+||+||.+++|+++++++|+.+++|.
T Consensus 87 ~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 166 (1079)
T PLN02638 87 DADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPG 166 (1079)
T ss_pred cchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccccccCcc
Confidence 58999999998654555667889999999999999988887788877555688999999988999997776666666665
Q ss_pred CCCCccccccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCCCCCccC
Q 001413 170 VGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDASTDVLVD 248 (1082)
Q Consensus 170 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 248 (1082)
+ .||||||+|+.+.+.++|.|||+||+++||||||+||||||+||+||+||+.++.+....++++|+ +.++.++.+++
T Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1079)
T PLN02638 167 A-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVLMD 245 (1079)
T ss_pred c-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCccccccc
Confidence 4 689999999877778999999999999999999999999999999999887766665444565544 33221222467
Q ss_pred ccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001413 249 DSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLP 328 (1082)
Q Consensus 249 ~~~~~~~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~P 328 (1082)
|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+|
T Consensus 246 ~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~P 325 (1079)
T PLN02638 246 DALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLP 325 (1079)
T ss_pred cccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhh
Q 001413 329 VNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 408 (1082)
Q Consensus 329 v~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea 408 (1082)
|+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.||
T Consensus 326 v~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EA 405 (1079)
T PLN02638 326 VNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (1079)
T ss_pred cccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCC
Q 001413 409 SEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTP 488 (1082)
Q Consensus 409 a~FA~~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~ 488 (1082)
|+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+||++
T Consensus 406 a~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~ 485 (1079)
T PLN02638 406 SEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTP 485 (1079)
T ss_pred HHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCc
Q 001413 489 WPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINN 568 (1082)
Q Consensus 489 w~~~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~ 568 (1082)
|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+||
T Consensus 486 W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNn 565 (1079)
T PLN02638 486 WPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINN 565 (1079)
T ss_pred CCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCC
Q 001413 569 SKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPL 648 (1082)
Q Consensus 569 ~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~ 648 (1082)
|++||+||||||||+.|+++|||||||+|||+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||.
T Consensus 566 s~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p~~ 645 (1079)
T PLN02638 566 SKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPI 645 (1079)
T ss_pred hHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccCCC-ccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccch
Q 001413 649 KPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 727 (1082)
Q Consensus 649 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 727 (1082)
..+..... +++|||++ |++.++.+.+...+++..++.+.+.+.+++++++++.++...+++++.++++..++++||+|
T Consensus 646 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S 724 (1079)
T PLN02638 646 KPKHKKPG-FLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (1079)
T ss_pred cccccccc-cccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhcccc
Confidence 54322222 22245555 43322221111111222233445567788888888888777778888899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCccc
Q 001413 728 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 807 (1082)
Q Consensus 728 ~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~ 807 (1082)
.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|++++|.
T Consensus 725 ~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~ 804 (1079)
T PLN02638 725 AVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 804 (1079)
T ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999998888899
Q ss_pred ccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 001413 808 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMP 887 (1082)
Q Consensus 808 G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip 887 (1082)
|+||+|+.++++||+|||+|++||++++++|++++++++|+++|||+|+++++||++++++++|+++|++||++|++++|
T Consensus 805 GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~G~~i~P 884 (1079)
T PLN02638 805 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIP 884 (1079)
T ss_pred CcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999987778999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCC
Q 001413 888 QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 967 (1082)
Q Consensus 888 ~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d~ 967 (1082)
.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++|+++||++++++|+|+++++.|.||+|..+.++
T Consensus 885 ~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK~~d~~~ 964 (1079)
T PLN02638 885 QISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 964 (1079)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccccccccc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred CccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 001413 968 DFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVV 1047 (1082)
Q Consensus 968 ~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~P~~v~~ 1047 (1082)
.++++|+|+||++++|++||+++|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++
T Consensus 965 ~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~P~~v~v 1044 (1079)
T PLN02638 965 DFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVV 1044 (1079)
T ss_pred cccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehH
Confidence 78999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001413 1048 WSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082 (1082)
Q Consensus 1048 ~s~lla~~f~~lwv~i~~~~~~~~~~~~~~~~~~~ 1082 (1082)
||++|+++||||||+|+||+++++||++++||++|
T Consensus 1045 ~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1045 WSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999
|
|
| >PLN02400 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02436 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02915 cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
| >PLN02189 cellulose synthase | Back alignment and domain information |
|---|
| >PLN02195 cellulose synthase A | Back alignment and domain information |
|---|
| >PLN02248 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals | Back alignment and domain information |
|---|
| >PLN02190 cellulose synthase-like protein | Back alignment and domain information |
|---|
| >PLN02893 Cellulose synthase-like protein | Back alignment and domain information |
|---|
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A | Back alignment and domain information |
|---|
| >PRK05454 glucosyltransferase MdoH; Provisional | Back alignment and domain information |
|---|
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK14716 bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
| >PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
| >PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
| >cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin | Back alignment and domain information |
|---|
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
| >COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
| >PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
| >PF13506 Glyco_transf_21: Glycosyl transferase family 21 | Back alignment and domain information |
|---|
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
| >PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 | Back alignment and domain information |
|---|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >PRK10063 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
| >KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
| >KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
| >COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
| >PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1082 | ||||
| 1weo_A | 93 | Solution Structure Of Ring-Finger In The Catalytic | 7e-23 | ||
| 4hg6_A | 802 | Structure Of A Cellulose Synthase - Cellulose Trans | 2e-05 |
| >pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93 | Back alignment and structure |
|
| >pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-41
Identities = 48/84 (57%), Positives = 64/84 (76%)
Query: 13 KSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72
K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+CPQCKTRY
Sbjct: 9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68
Query: 73 KKHKGSPAILGDREEDGDADDGAS 96
K+ +GSP + GD +E+ +S
Sbjct: 69 KRLRGSPRVEGDEDEEDIDSGPSS 92
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1082 | ||||
| d1weoa_ | 93 | g.44.1.1 (A:) Cellulose synthase A catalytic subun | 8e-47 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 3e-05 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 0.002 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 160 bits (405), Expect = 8e-47
Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 13 KSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72
K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+CPQCKTRY
Sbjct: 9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68
Query: 73 KKHKGSPAILGDREEDGDADDGASD 97
K+ +GSP + GD +E+ D D G S
Sbjct: 69 KRLRGSPRVEGDEDEE-DIDSGPSS 92
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1082 | |||
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 100.0 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 99.54 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 99.04 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 98.47 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 95.27 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 93.7 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 93.46 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 90.83 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 81.53 |
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1e-41 Score=305.83 Aligned_cols=85 Identities=59% Similarity=1.281 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 24554345658854443377754578999300389999974401268787309987888600000136987545999877
Q 001413 9 AAQVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREED 88 (1082)
Q Consensus 9 ~~~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e 88 (1082)
.+++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ++|
T Consensus 5 ~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gD-e~e 83 (93)
T d1weoa_ 5 SSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD-EDE 83 (93)
T ss_dssp SSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-CCC
T ss_pred CCCCCCHHHCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC-CCC
T ss_conf 7799773451552201154632417899888875236986450789999851670274448724552589877787-100
Q ss_pred CCCCCC
Q ss_conf 888887
Q 001413 89 GDADDG 94 (1082)
Q Consensus 89 ~~~dd~ 94 (1082)
|++||-
T Consensus 84 ~~~d~~ 89 (93)
T d1weoa_ 84 EDIDSG 89 (93)
T ss_dssp CCSCCC
T ss_pred CCCCCC
T ss_conf 143468
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|