Citrus Sinensis ID: 001414
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1082 | 2.2.26 [Sep-21-2011] | |||||||
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.825 | 0.771 | 0.345 | 1e-149 | |
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.783 | 0.722 | 0.355 | 1e-149 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.783 | 0.722 | 0.354 | 1e-148 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.785 | 0.725 | 0.346 | 1e-145 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.805 | 0.758 | 0.275 | 2e-96 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.794 | 0.827 | 0.246 | 1e-45 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.806 | 0.810 | 0.233 | 8e-34 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.328 | 0.339 | 0.229 | 7e-10 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.328 | 0.339 | 0.229 | 7e-10 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.328 | 0.339 | 0.229 | 8e-10 |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust.
Identities = 335/971 (34%), Positives = 529/971 (54%), Gaps = 78/971 (8%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470
++L +D AL A+ T K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 528
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNSISVTTSYNLARL 506
Query: 529 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 589 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 648 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707
H ++A +Y +V+ + NL+AANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 768 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827
L+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVG 800
Query: 828 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 887
+ FD + C LL A+ H A +++++ + E R K
Sbjct: 801 DKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEEK-------------EMRTKQ 845
Query: 888 EEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 947
E++K+ L +K E E+K LR+ EE +++ EQ R+ R S + E +K+
Sbjct: 846 EQEKEVLRQKLLKEQEEKHLREIEEQ-KKLLEQ-RAQYLEKTRNLLSFTGEMETPKEKKQ 903
Query: 948 RRKGGKRRKKD 958
R GG+R KK+
Sbjct: 904 RGGGGRRSKKN 914
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 529 bits (1363), Expect = e-149, Method: Compositional matrix adjust.
Identities = 327/920 (35%), Positives = 513/920 (55%), Gaps = 72/920 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSS--FVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470
++L +D AL A+ T K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 528
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 529 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 589 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 648 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 768 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVG 800
Query: 828 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAALA 880
+ FD T C LL A+ H A +++++ R Q +E RQ L
Sbjct: 801 DKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLK 858
Query: 881 EE--ARRKAEEQKKYLLEKR 898
E+ R + +E++K LLE+R
Sbjct: 859 EQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust.
Identities = 326/920 (35%), Positives = 512/920 (55%), Gaps = 72/920 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470
++L +D AL A+ T K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 528
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 529 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 589 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647
A S++G+L L +W ++ F R D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 648 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 768 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVG 800
Query: 828 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAALA 880
+ FD + C LL A+ H A +++++ R Q +E RQ L
Sbjct: 801 DKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLK 858
Query: 881 EE--ARRKAEEQKKYLLEKR 898
E+ R + +E++K LLE+R
Sbjct: 859 EQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 321/926 (34%), Positives = 505/926 (54%), Gaps = 76/926 (8%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470
++L +D AL A+ T K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARL 528
L LD R + + H E +N VT +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTTYNLARL 506
Query: 529 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 589 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 648 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707
H ++A +Y +V+ + NLYAANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 768 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827
L+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVG 800
Query: 828 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 887
+ FD + C LL A+ H A +++++ + E R K
Sbjct: 801 DKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEEK-------------ELRAKQ 845
Query: 888 EEQKKYLLEKRKLEDEQKRLRQQEEH 913
E++K+ L +K E E+KRL++ EE
Sbjct: 846 EQEKEILRQKLIKEQEEKRLKEIEEQ 871
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 258/935 (27%), Positives = 478/935 (51%), Gaps = 63/935 (6%)
Query: 4 VYIPVQNSEEE--VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++S E+ + + +LP D ++L IL+AE+A L W+ +A EY++Q +V+ F
Sbjct: 14 IAIPLKDSHEDEVIEINCSELP-DGEEVLQILEAEEAKLSYWIEVALEYYRQDRVDLFMM 72
Query: 62 ILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
ILE S EY V+ +++ L+ L Y+ G E + +K + F AT +N A
Sbjct: 73 ILESAGSRAGLEYEG-VKQDQMRALDILAAYWMTQGYREKAKDKKSDFFSKATVLFNTAD 131
Query: 122 RIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+I M+E S + L + + E A F V++ + NV L+G+A + FN+
Sbjct: 132 KIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIAFNKK 191
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA++++P NV A+
Sbjct: 192 DYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYNVSAMCG 251
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L ++ L + ++ + R++ + +AL +LANHFFF + L A
Sbjct: 252 LGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKEIERAWTLAWHAAT 311
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ K+ ++Y + R H++G ++ A YY + + N H +YGLGQ+ +
Sbjct: 312 YNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEH--TLAHYGLGQMYIHRN 369
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EKAQELLRKAAKIDP 407
+ A+ F+ V + P+N +T+K LG +Y VQL +K +++L K ++
Sbjct: 370 EIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVEN 429
Query: 408 RDAQAFIDLGELLISSDTG-------AALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFES 460
D +A IDL +LL ++D A+D T + E+LNN+G ++ ++E
Sbjct: 430 DDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYEK 489
Query: 461 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 520
A FK A L+ + T D + +L+ R + +H+ +T
Sbjct: 490 AEHHFKRA------KERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------LT 527
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+ + S + + +
Sbjct: 528 IRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQGV 587
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGNWNYFAAL 637
+ + P +++G+L ++W+ A++ F S + K D Y+ ++LGN +F L
Sbjct: 588 QFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGN-VWFEQL 646
Query: 638 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697
N R + E ++++A ++Y + + N+YAANG G VLA K ++ ++D+F+QV+E
Sbjct: 647 LNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRE 706
Query: 698 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 757
+ S + DVW+N+AHV + + A++MY + ++KF D+ + YLA+ +Y A
Sbjct: 707 STS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRA 761
Query: 758 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 817
+ K++L A+ N L+F+ + ++K + L+ + T+++V + + +L+ A
Sbjct: 762 NMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSEQVTAAIDDLKFAD 821
Query: 818 RVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHREAAEREEQQNRQRQEA 873
++F ++S + + T + CK LL AK AA+ ++++ R+ E
Sbjct: 822 KIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEERRLMEK 881
Query: 874 ARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 908
+ +A + + E + K EK+KLED K LR
Sbjct: 882 QEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 246/1000 (24%), Positives = 436/1000 (43%), Gaps = 140/1000 (14%)
Query: 4 VYIPVQNSEEE-VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+ +P+ E++ V + LP DA+++ +IL EQAP + W A EY+ +G EQ I
Sbjct: 14 IEVPLLGQEDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILI 73
Query: 63 LEEGSSPEIDEYYADVRYERIAILNA-LGVYYTYLGKIETKQRE---KEEHFILATQYYN 118
L+ G D E + ILNA + Y + + +++ ++E Y
Sbjct: 74 LKSGLETLKDS-------ESLCILNANIAAIYLSMAREAMLKKDTDLRDEQLRNVRTYLE 126
Query: 119 KASRIDMHEPSTWVGKG--QLLLA---KGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173
A+ ID + G ++LL K +E A+ F VL+ N+ LG+A + +
Sbjct: 127 AANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSGGNILGFLGKARILY 186
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN--V 231
+G Y +L+ Y+RAL +P R+GIGLC + L A A+ R QLDP+N V
Sbjct: 187 AKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLDPKNTVV 246
Query: 232 EALVALAVMDL---QANEAAGIR---KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
+ + L DL N + ++ K ++ +QRAF+ +A + L + + +
Sbjct: 247 DTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYE 306
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+L E + + + YY + R+YH G+ EKA Y + K + H +
Sbjct: 307 GCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKA-KAADDRH--LLSS 363
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAA 403
G+GQ+Q+ D SA FE++ E E L LG ++ + + KA+ LL +A
Sbjct: 364 VGIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAF 423
Query: 404 KID-----PR--DAQAFIDLGELLISSDTGAALDAFKTKAGE-------EVPIEVLNNIG 449
+ PR D+ +I L DT +L F T+A + V E+LNNI
Sbjct: 424 NLVGSSKLPRVVDSDLYITQARLWEKEDTKKSL-GFLTRALDFLESAHMSVGPELLNNIA 482
Query: 450 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 509
V+ + G AH G+ I K K+ + DA+ + D
Sbjct: 483 VLQYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLLLD----------- 517
Query: 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 569
+NLAR E++ +T AS Y IL K+ ++DA +R + + N
Sbjct: 518 -------------YNLARCEEELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNE 564
Query: 570 QLSIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 623
+ E+ ++ L+V + LS +++ + +T R D D Y
Sbjct: 565 ETFKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTLRHWHD-----DIY 619
Query: 624 ATLSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 679
+ + LGN A + N++ K + ++ KA + Y + I N +AA G ++L
Sbjct: 620 SLVQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDPKNAHAAQGIAIIL 678
Query: 680 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 739
A+ QF + + ++V+EA + + IN+ + F+ A+++++
Sbjct: 679 AQNRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSRAIEVFETVYSSTG 732
Query: 740 YNTDAQILLYLARTHYE---AEQWQDCKKSLLRAIHLA----PSNYTLRFDAGVAMQKFS 792
+ +L L R + + D K +R LA P N +L F+ VA +F
Sbjct: 733 ESDTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPSLLFN--VAFVQFQ 790
Query: 793 ASTLQKTR----RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKH 848
L + + RT +++ + +L+ ++ F+ L + H Y
Sbjct: 791 LCELIRQKPENSRTVEDLNFAMQQLDASIETFTKLVSVE--------------HPPYSPT 836
Query: 849 LLDA-AKIHREAAEREEQQNRQRQEAARQ--AALAEEAR--RKAEEQKKYLLEKRKLEDE 903
++ AK+ + +R+ ++ Q Q + AA E+AR R+ E+ ++ E+ L+++
Sbjct: 837 SIEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEK 896
Query: 904 QKRLRQQEEHFQRVKE---QWRSSTPASKRRERSENDDDE 940
Q+R RQ +E Q+++E +WR S + + S +DD+E
Sbjct: 897 QERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 249/1068 (23%), Positives = 447/1068 (41%), Gaps = 195/1068 (18%)
Query: 6 IPVQNSEEEVRVALDQ-LPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILE 64
IP++ SEE V + L+ LP D +D+ +L E + + WL IA Y GK + +++E
Sbjct: 21 IPLKASEELVGIDLETDLPDDPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIE 80
Query: 65 EGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124
+D + ER ++ L + L K ++ E +EH + + N I
Sbjct: 81 MA----LDVFQNS---ERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAEL-NLKDAIG 132
Query: 125 MHEPSTWVGKG----QLLLAKGEVEQA---SSAFKIVLEAD--------RDNVPALLGQA 169
+P TW+G +L +G ++A S F + A+ + N LL +A
Sbjct: 133 F-DP-TWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRA 190
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ + + Y SL+ ++ L ++P R+GIGLC ++L A +++QRALQL+P+
Sbjct: 191 KLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPK 250
Query: 230 NVEALVALAVMDLQ------ANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
N A + + + + + N+ K + + F + + L L +++F
Sbjct: 251 NTSASILVLLGEFRESFTNSTNDKTFKEAFTKALSDLNNIFSENQHNPVLLTLLQTYYYF 310
Query: 281 TGQHFLVEQLTETALAVTNHGPTK----------SHSYYNLARSYHSKGDYEKAGLYYMA 330
G + +T L + +H K S S + R++++ GDY K+ + +
Sbjct: 311 KGDY-------QTVLDIYHHRILKMSPMIAKIVLSESSFWCGRAHYALGDYRKSFIMFQE 363
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV--- 387
S+K K + + GLGQ Q+K ++ FE + + E LG +Y
Sbjct: 364 SLK---KNEDNLLAKLGLGQTQIKNNLLEESIITFENLYKTNESLQELNYILGMLYAGKA 420
Query: 388 -------------QLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLIS------SDTGA 427
Q EKA + L + K+ Q I L+IS +
Sbjct: 421 FDAKTAKNTSAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQNQYKT 480
Query: 428 ALDAFKTKAGE-------EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 480
+LD + +KA E E+P+EVLNN+ HF G+F A FK A
Sbjct: 481 SLD-YLSKALEEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA------------ 527
Query: 481 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 540
K V D S+ +T+ +N+AR E+ +D +
Sbjct: 528 --KAKVSDKDESV------------------------NITLEYNIARTNEK-NDCEKSES 560
Query: 541 LYRLILFKYQDYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLGDLE 597
+Y + + Y+ A +R + A++ ++ +S E+ N+ L +N S G
Sbjct: 561 IYSQVTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG-WY 618
Query: 598 LKNDDWVKAKETFRAASDAT----DGKDSYATLSLGNWNYFAAL-----RNEKRAPKLEA 648
LKN K E + T + D+YA +SL N A RN K K +
Sbjct: 619 LKNSKERKNNEKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEKSKH 678
Query: 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 708
++L KA +LY +V+ N++AA G ++ AE + + ++ +V+++
Sbjct: 679 SYL-KAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE------ 731
Query: 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY-------EAEQW 760
DV +NLAH Y + A++ Y+ L+KF T IL L R Y +
Sbjct: 732 DVQLNLAHCYLEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWYARAIKERSVNFY 791
Query: 761 QDCKKSLLRAIHL-----APSNYTLRFDAGVAMQKFS-ASTLQKTR---RTADEVRSTVA 811
Q ++ A+ L + S + +A+ F A TL+++ RT +++ ++
Sbjct: 792 QKALENAKTALDLFVKESSKSKFIHSVKFNIALLHFQIAETLRRSNPKFRTVQQIKDSLE 851
Query: 812 ELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREE---QQNR 868
L+ + +F L+ ++ ++++ ++ + + +A + R E+EE +Q+
Sbjct: 852 GLKEGLELFRELNDLKEFNM--IPKEELEQRIQLGETTMKSA-LERSLNEQEEFEKEQSA 908
Query: 869 QRQEAAR---QAALAEEARRKAEEQKKYL-LEK-----RKLEDEQKRLRQQEEHF----- 914
+ EA + + L E+ K EE+ + L LEK RKL+DE ++L Q+ E
Sbjct: 909 KIDEARKILEENELKEQGWMKQEEEARRLKLEKQAEEYRKLQDEAQKLIQEREAMAISEH 968
Query: 915 --------QRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
++ P KR+ ++ + E +RRK K+
Sbjct: 969 NVKDDSDLSDKDNEYDEEKPRQKRKRSTKTKNS----GESKRRKAAKK 1012
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 168/387 (43%), Gaps = 32/387 (8%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y+ LG + ++ + +E A ++Y A R+ ++ L+A G++E A A+
Sbjct: 92 YSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 147
Query: 153 IVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
L+ + D V + LG GR ++ Y +A++ P+ A +G
Sbjct: 148 SALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAIETQPNFAVAWS-NLGCVFNAQ 204
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G++ A F++A+ LDP ++A + L + EA + + RA + P A+
Sbjct: 205 GEIWLAIHHFEKAVTLDPNFLDAYINLGNV---LKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
LA ++ G L A+ + H P +Y NLA + KG +A Y
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNT 318
Query: 331 SVKEINKPHEFIFPYYG-----LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+++ + P + L ++ + G+ A+ + K LE++P+ L +
Sbjct: 319 ALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 370
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP--I 442
Q G++++A ++A +I P A A+ ++G L D AL + T+A + P
Sbjct: 371 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY-TRAIQINPAFA 429
Query: 443 EVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ +N+ IH + G A S++ AL
Sbjct: 430 DAHSNLASIHKDSGNIPEAIASYRTAL 456
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 168/387 (43%), Gaps = 32/387 (8%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y+ LG + ++ + +E A ++Y A R+ ++ L+A G++E A A+
Sbjct: 92 YSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 147
Query: 153 IVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
L+ + D V + LG GR ++ Y +A++ P+ A +G
Sbjct: 148 SALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAIETQPNFAVAWS-NLGCVFNAQ 204
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G++ A F++A+ LDP ++A + L + EA + + RA + P A+
Sbjct: 205 GEIWLAIHHFEKAVTLDPNFLDAYINLGNV---LKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
LA ++ G L A+ + H P +Y NLA + KG +A Y
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNT 318
Query: 331 SVKEINKPHEFIFPYYG-----LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+++ + P + L ++ + G+ A+ + K LE++P+ L +
Sbjct: 319 ALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 370
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP--I 442
Q G++++A ++A +I P A A+ ++G L D AL + T+A + P
Sbjct: 371 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY-TRAIQINPAFA 429
Query: 443 EVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ +N+ IH + G A S++ AL
Sbjct: 430 DAHSNLASIHKDSGNIPEAIASYRTAL 456
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 168/387 (43%), Gaps = 32/387 (8%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y+ LG + ++ + +E A ++Y A R+ ++ L+A G++E A A+
Sbjct: 92 YSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 147
Query: 153 IVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
L+ + D V + LG GR ++ Y +A++ P+ A +G
Sbjct: 148 SALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAIETQPNFAVAWS-NLGCVFNAQ 204
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G++ A F++A+ LDP ++A + L + EA + + RA + P A+
Sbjct: 205 GEIWLAIHHFEKAVTLDPNFLDAYINLGNV---LKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
LA ++ G L A+ + H P +Y NLA + KG +A Y
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNT 318
Query: 331 SVKEINKPHEFIFPYYG-----LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+++ + P + L ++ + G+ A+ + K LE++P+ L +
Sbjct: 319 ALR--------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 370
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP--I 442
Q G++++A ++A +I P A A+ ++G L D AL + T+A + P
Sbjct: 371 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY-TRAIQINPAFA 429
Query: 443 EVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ +N+ IH + G A S++ AL
Sbjct: 430 DAHSNLASIHKDSGNIPEAIASYRTAL 456
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1082 | ||||||
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.997 | 0.989 | 0.813 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.991 | 0.986 | 0.802 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.981 | 0.988 | 0.805 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.983 | 0.979 | 0.806 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.966 | 0.990 | 0.829 | 0.0 | |
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.973 | 0.988 | 0.798 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.959 | 0.988 | 0.787 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.981 | 0.973 | 0.751 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.956 | 0.978 | 0.730 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.960 | 0.931 | 0.703 | 0.0 |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1093 (81%), Positives = 986/1093 (90%), Gaps = 14/1093 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHE STWVGKGQLLLAKG+VEQA +AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV+P CP A+R+GIGLC YKLGQ KAR+AFQR LQLDPENVEALVAL +M
Sbjct: 181 SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL N+A+GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE NKPH+F+ PYYGLGQVQLKLGDFRS
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+L+NFEKVLE+YP+NCE LKALGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 361 SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
I+SDTGAALDAFKT K GEEVPIE+LNNIGV++FE+GEFE A Q+FK+A+GDGIW
Sbjct: 421 ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
L+ +D K +Y DA SM FKDMQLFH+ E DG+ VELPWNKVTVLFNLARLLEQ+++
Sbjct: 481 LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
T AS+LYRLILFK+ DY+DAYLRLAAIAKARNN+QLSIELV +ALKVN K PN+L MLG
Sbjct: 541 TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
DLELKNDDWVKAKETFR+ASDATDGKDSYATLSLGNWNYFAA+R+EKRAPKLEATHLEKA
Sbjct: 601 DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KELYTRV+VQH +NLYAANGAGVVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 661 KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNFALA+KMYQNCLRKFYYNTD+Q+LLYLARTHYEAEQWQDCKK+LLRAIHLA
Sbjct: 721 AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAEL+NAVR+FS LSAASNLH HGF
Sbjct: 781 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGF 840
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKI THV YCKHLL+AAK+H EAAEREE QNR R E ARQ LAEEARRKAEEQ+K+
Sbjct: 841 DEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQ 900
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
LE+RK EDE KR+ QQE+HF+RVKEQW+S+ SKR+ERS+ DDDE G SE+RRRKGGKR
Sbjct: 901 LERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDDEGGQSERRRRKGGKR 960
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1014
RKKDK S Y++E A AD MD ++E EDED +MN+RE QMN+QDDD E++A D LAA
Sbjct: 961 RKKDK---SRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQDDDGEDDAQDLLAA 1017
Query: 1015 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ-----LRDNTDELQDSDGELREN 1069
AGLEDSD +D+MA + RR+RA SESD+DEP +++ +R+N+ E+Q+SDGE++++
Sbjct: 1018 AGLEDSDAEDDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVRENSAEVQESDGEIKDD 1077
Query: 1070 DHKSNGGAALDDD 1082
+ K NG AA DD+
Sbjct: 1078 NDKPNGDAAEDDE 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1769 bits (4581), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1094 (80%), Positives = 980/1094 (89%), Gaps = 21/1094 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++Q+R
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ D DNVPALLGQACVEFNRGR+SD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKR LQV+P+CP A+RLGIGLCRYKLGQ KA+QAF+R LQLDPENVE+L+ALA+M
Sbjct: 181 SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 361 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
I SDTGAALDAFKT K G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 421 ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
L+ ++ + K+ IDA+ S LQFKDMQLFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 481 LSFINEENKS-SIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYD 539
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
+ AS+ YRLILFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 540 SGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 599
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
+LELKNDDWVKAKET R ASDATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 600 ELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKA 659
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KEL TRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 660 KELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 719
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 720 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 779
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 780 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 839
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKI+THV YC HLL AAK+H EAAE EEQQ RQRQE ARQ ALAEEARRKAEEQ+K+
Sbjct: 840 DEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQ 899
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
+E+RK EDE KR+++QEEHF+RVKEQW+SS+ SKRRERS DD+E G EK+R+KGGKR
Sbjct: 900 MERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGTGEKKRKKGGKR 956
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENANDRLA 1013
RKKDK S+ Y+ E E D+MD + EDE+A +NYR EP QMN DD EENA LA
Sbjct: 957 RKKDKHSKLRYDAEEPEDDLMD-EQGMEDEEADINYREEPQTQMN---DDAEENAQGLLA 1012
Query: 1014 AAGLEDSDVDDEM-APSITAARRRRALSESDDDEP-FERQ---LRDNTDELQDSDGELRE 1068
AAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ +R N+ ++Q SDGE+R+
Sbjct: 1013 AAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRD 1072
Query: 1069 NDHKSNGGAALDDD 1082
D K+NG D++
Sbjct: 1073 GD-KTNGDDGNDEE 1085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1752 bits (4538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1079 (80%), Positives = 960/1079 (88%), Gaps = 17/1079 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A+RLGIGLCRY+L Q GKA+QAF+R LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 238 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 298 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
IS+D AALDAFKT K G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 418 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 478 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 538 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
+LELKNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 598 ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 718 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 837
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 838 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 897
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRRKGGKR
Sbjct: 898 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 956
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1014
RKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N D LA
Sbjct: 957 RKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAE 1015
Query: 1015 AGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELR 1067
AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 1016 AGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1748 bits (4526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1087 (80%), Positives = 979/1087 (90%), Gaps = 23/1087 (2%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWL+IAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEID+YYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRAL V+P CP A+RLGIGLCRYKLGQ KA+QAF+R LDPENVEALVALA+M
Sbjct: 181 SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
I SDTGAALDAFKT K G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 418 ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
L+ ++ + K+ IDA+ S LQFKDM+LFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 478 LSFINEEKKS-SIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLND 536
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
+ AS+LYRL+LFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 537 SGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 596
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
+LELKNDDWVKAKET RAASDAT+GKDSYA+LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 597 ELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKA 656
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KELYTRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 657 KELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 716
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 717 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 776
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 777 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 836
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKI+THV YC HLL AAK+H EAAEREEQQ RQRQE ARQ A AEEARRKAEEQ+K+
Sbjct: 837 DEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQ 896
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
+E+RK EDE KR++QQEEHF+RVKEQW+SS+ SKRRERS +D++ G EK+R+KGGKR
Sbjct: 897 MERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS-DDEEGGGTGEKKRKKGGKR 954
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENANDRLA 1013
RKKDK S+S Y+TE E + M +E EDE+A +NYR EP QMN DD EENA LA
Sbjct: 955 RKKDKHSKSRYDTEEPE-NDMMDEQEMEDEEADINYREEPQTQMN---DDAEENAQGLLA 1010
Query: 1014 AAGLEDSDVDDEM-APSITAARRRRALSESDDDEPF-ERQ---LRDNTDELQDSDGELRE 1068
AAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ R+N+ ++Q SDGE+R+
Sbjct: 1011 AAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRD 1070
Query: 1069 NDHKSNG 1075
D K+NG
Sbjct: 1071 GD-KTNG 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1741 bits (4508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1057 (82%), Positives = 957/1057 (90%), Gaps = 11/1057 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS EIDEYYADVRYERIAILNALG YY+YLGK+ETKQREKEE+FI AT++YNKA
Sbjct: 61 QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AF+IVLE DRDNV ALLGQACVE++RG Y +
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL +KRALQV+P CPGA+RLGIG C YKLG +GKA AFQR LDPENVEALV+LA++
Sbjct: 181 SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NEAA IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYE A YY ASVKEINKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKAAKIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
IS+DTGAALDAFKT K GEEVPIEVLNNI VIHFE+ E E A Q+FK+ALGDGIW
Sbjct: 418 ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
LT L+ K TY +DA++S+LQ+KDMQ+F R E +G+ VEL WNKVT LFNLARLLEQ+H+
Sbjct: 478 LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
T AS LYRLILFKY DYVDAYLRLAAIAKARNNL LSIELVNEAL VN K PNALSMLG
Sbjct: 538 TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
DLELKNDDWVKAKETFRAAS+ATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 598 DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLFTQVQEAASGS+FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNFALA+KMYQNCL+KF+YNTD+QILLYLARTHYEAEQWQDCK++LLRAIHL
Sbjct: 718 AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNYTLRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSAASNL+ +GF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGF 837
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKINTHVEYCKHLL+AA +HREAAEREEQQNRQR + ARQ ALAEEARRKAEEQ+K+
Sbjct: 838 DEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ 897
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
LE+RK EDE KR+RQQEEHF+RVKEQW+SST ASKRR+R++ DD E GH EKRRRKGGKR
Sbjct: 898 LERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKR 957
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1014
RKK+KSSRS YE E EADMMD +EPED+DA++N+REP QMNDQDD+ EENA D LAA
Sbjct: 958 RKKEKSSRSRYEME--EADMMDDHDEPEDDDANVNFREPGYQMNDQDDNAEENAQDVLAA 1015
Query: 1015 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ 1051
AGLEDSD DD+ A +A RR+RA SESD+DE ER+
Sbjct: 1016 AGLEDSDADDDAAAPSSAGRRKRAWSESDEDEISERK 1052
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1713 bits (4437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1093 (79%), Positives = 956/1093 (87%), Gaps = 40/1093 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+Y+RIAILNALG YY+YLGKIETKQREKEE+FI AT+YYNKA
Sbjct: 61 QILEEGSSNDIDEYYADVKYDRIAILNALGAYYSYLGKIETKQREKEEYFIQATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE+EQA +AFKIVLE DRDNV ALLGQACVE+NR Y++
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIEQAYNAFKIVLEGDRDNVSALLGQACVEYNRSHYNE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQVHP CPG+ LDPENVEALV+LA++
Sbjct: 181 SLKSYKRALQVHPECPGS---------------------------LDPENVEALVSLAIL 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NE GIR+GME MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 214 DLQTNEVNGIRRGMESMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYE A YY ASVKE NKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYETASRYYWASVKETNKPSEFVFPYYGLGQVQLKLGEIKN 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIY QLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYAQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
ISSDTGAALDA KT K G EVP+EVLNNIGVI+FE+ E E A ++FK+A+GDGIW
Sbjct: 394 ISSDTGAALDALKTARSLLKKGGHEVPVEVLNNIGVIYFEREELELALETFKEAVGDGIW 453
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
L LD K KTY IDA+AS+L +KDMQ FH+ E DG+ VEL W+KVT LFNLARLLEQ+H+
Sbjct: 454 LAFLDGKAKTYTIDAAASILHYKDMQFFHQLEQDGHRVELTWDKVTALFNLARLLEQMHN 513
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
A+VLY LILFKY DYVDAYLRLAAI+KARNNLQLSIELVNEALKVN K PNALSMLG
Sbjct: 514 IETANVLYVLILFKYPDYVDAYLRLAAISKARNNLQLSIELVNEALKVNDKCPNALSMLG 573
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
DLELKNDDWVKAKETFRAAS+ATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 574 DLELKNDDWVKAKETFRAASEATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKA 633
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLF +VQEAASGS+FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFMEVQEAASGSIFVQMPDVWINL 693
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNFALA+KMYQNCLRKFYY+TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFALAVKMYQNCLRKFYYSTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA 753
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNY LRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSA+SNLH HGF
Sbjct: 754 PSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSASSNLHFHGF 813
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKINTHVEYCKHLL+AAK+HREAAEREEQQNRQRQE ARQ ALAEEARRKAEEQKK+L
Sbjct: 814 DEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMALAEEARRKAEEQKKFL 873
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
LEKRK EDE KR+RQQEEHF+RVKEQW++STP SKRR+RSE D++E GHSEKRRRKGGKR
Sbjct: 874 LEKRKQEDELKRVRQQEEHFERVKEQWKTSTPGSKRRDRSEVDEEEGGHSEKRRRKGGKR 933
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1014
RKK+KSS+S YE E EADMMD REE EDEDA++NY E ++++QD+D EENA D LAA
Sbjct: 934 RKKEKSSKSRYEIEEGEADMMDDREELEDEDANVNYGEHKNRLDNQDEDAEENAQDLLAA 993
Query: 1015 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELREN 1069
AGLEDSD +D APS T ARRRRALSESDDDE + +L R N+ ELQ+SDGE+RE
Sbjct: 994 AGLEDSDAED-AAPSST-ARRRRALSESDDDEVLDSKLQSSPVRGNSAELQESDGEIREG 1051
Query: 1070 DHKSNGGAALDDD 1082
K G AA DD+
Sbjct: 1052 ADKQYGDAAFDDE 1064
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1701 bits (4405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1079 (78%), Positives = 937/1079 (86%), Gaps = 41/1079 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAA---------------------------LDPENVEALVGLAII 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 214 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
IS+D AALDAFKT K G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 394 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 453
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 454 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 513
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 514 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 573
Query: 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 654
+LE KNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 574 ELEXKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 633
Query: 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 693
Query: 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 753
Query: 775 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 834
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 754 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 813
Query: 835 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 814 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 873
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 954
LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRRKGGKR
Sbjct: 874 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 932
Query: 955 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 1014
RKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N D LA
Sbjct: 933 RKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAE 991
Query: 1015 AGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELR 1067
AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 992 AGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1050
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1627 bits (4214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/1078 (75%), Positives = 928/1078 (86%), Gaps = 16/1078 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 473
LISSDTGAALDAFK K G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 474 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 534 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 653
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 654 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 713
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 714 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 774 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 833
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 834 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 893
FD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 894 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGG 952
LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGG
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGG 958
Query: 953 KRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 1010
KRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 959 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHD 1018
Query: 1011 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1065
LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1019 LLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1572 bits (4071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/1078 (73%), Positives = 902/1078 (83%), Gaps = 43/1078 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FILAT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKHREKEEQFILATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL YKRALQV P CP A LDP+NVEALVAL +M
Sbjct: 181 SLNLYKRALQVFPGCPAA---------------------------LDPDNVEALVALGIM 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 214 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGDYEKAG+YYMA++KE NKP EF+FPY+GLGQVQLKLG+ +
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELK 333
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ +KA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 334 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNDKALEYMRKATKLDPRDAQAFVGLGEL 393
Query: 420 LISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 473
LISSDTGAALDAFK K G+EVPIEVLN+IG +HFE+ EFESA +FK+ALGDGI
Sbjct: 394 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALDNFKEALGDGI 453
Query: 474 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQ+H
Sbjct: 454 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQLH 511
Query: 534 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593
T AA+ LY+LILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 512 KTEAATFLYQLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 571
Query: 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 653
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 572 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 631
Query: 654 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 713
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 632 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 691
Query: 714 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773
LAHVYFAQGNFALA+KMYQNCLRKF+ NTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 692 LAHVYFAQGNFALAVKMYQNCLRKFFNNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 751
Query: 774 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 833
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 752 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 811
Query: 834 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 893
FD KKI THV+YC HLL+AAK+HREAAEREE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 812 FDSKKIQTHVQYCSHLLEAAKVHREAAEREELQNRQRLEVARQAALAEEARRKAEEQRKY 871
Query: 894 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGG 952
LEKRK E+E +RL+Q+EE QR+KEQW+SSTP S KR++R E+DD E SE+RR+KGG
Sbjct: 872 QLEKRKQEEELRRLKQEEEKIQRIKEQWKSSTPGSHKRKDRVEDDDGEGKPSERRRKKGG 931
Query: 953 KRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 1010
KRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 932 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTNQEAEEPVDDDAHD 991
Query: 1011 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDN---TDELQDSDGE 1065
LAAAGLED DV D+ P+ + RRRRALS SD++ + + N T E ++S+GE
Sbjct: 992 LLAAAGLEDPDVYDDEVPA-SGVRRRRALSSSDEEGELMEESQPNQSPTREKEESNGE 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1544 bits (3997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 791/1125 (70%), Positives = 908/1125 (80%), Gaps = 86/1125 (7%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSP---------------EIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 61 QILEEGSSSGKQLYDDAASICSRIDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 120
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 121 KEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 180
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA-- 223
LGQA VEFNRGR+S+SL+ YKLGQL KARQAF R
Sbjct: 181 LGQASVEFNRGRFSESLQL-----------------------YKLGQLDKARQAFDRVLQ 217
Query: 224 ------------------------------LQLDPENVEALVALAVMDLQANEAAGIRKG 253
LQLDP+NVEALVAL +MDLQAN++ G+RKG
Sbjct: 218 ASGTGMFISSSYDIADCMRQQIVLITIILFLQLDPDNVEALVALGIMDLQANDSIGMRKG 277
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
M++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT HGPTKSHS+YNLAR
Sbjct: 278 MDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTHGPTKSHSFYNLAR 337
Query: 314 SYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
SYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+Y
Sbjct: 338 SYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVY 397
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 432
PDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAF
Sbjct: 398 PDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAF 457
Query: 433 KT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 486
K K G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K +
Sbjct: 458 KMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--L 515
Query: 487 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 546
S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLIL
Sbjct: 516 EQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLIL 575
Query: 547 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606
FKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKA
Sbjct: 576 FKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKA 635
Query: 607 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 666
KETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH
Sbjct: 636 KETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHN 695
Query: 667 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 726
SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL
Sbjct: 696 SNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFAL 755
Query: 727 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 786
+KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G
Sbjct: 756 TVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGA 815
Query: 787 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 846
MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC
Sbjct: 816 VMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYC 875
Query: 847 KHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKR 906
HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +R
Sbjct: 876 SHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRR 935
Query: 907 LRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS-H 964
L+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKSSR+ H
Sbjct: 936 LKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARH 995
Query: 965 YETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1023
YE + EA MD E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DVD
Sbjct: 996 YEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVD 1055
Query: 1024 DEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1065
D+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1056 DDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1099
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1082 | ||||||
| TAIR|locus:2051592 | 1091 | ELF8 "EARLY FLOWERING 8" [Arab | 0.981 | 0.973 | 0.709 | 0.0 | |
| ZFIN|ZDB-GENE-030131-3782 | 1160 | ctr9 "Ctr9, Paf1/RNA polymeras | 0.426 | 0.397 | 0.368 | 4.5e-141 | |
| DICTYBASE|DDB_G0277841 | 1106 | ctr9 "RNA polymerase II comple | 0.968 | 0.947 | 0.282 | 3.4e-125 | |
| UNIPROTKB|Q6DEU9 | 1172 | ctr9 "RNA polymerase-associate | 0.426 | 0.393 | 0.370 | 8.7e-109 | |
| WB|WBGene00007184 | 1201 | B0464.2 [Caenorhabditis elegan | 0.957 | 0.862 | 0.256 | 6.8e-98 | |
| UNIPROTKB|G3V897 | 1173 | Ctr9 "SH2 domain binding prote | 0.539 | 0.497 | 0.333 | 2e-87 | |
| MGI|MGI:109345 | 1173 | Ctr9 "Ctr9, Paf1/RNA polymeras | 0.539 | 0.497 | 0.333 | 1.4e-86 | |
| UNIPROTKB|Q4QR29 | 1157 | ctr9 "RNA polymerase-associate | 0.426 | 0.398 | 0.376 | 4.9e-86 | |
| UNIPROTKB|Q6PD62 | 1173 | CTR9 "RNA polymerase-associate | 0.539 | 0.497 | 0.333 | 6.1e-86 | |
| UNIPROTKB|F1S6V3 | 1173 | CTR9 "Uncharacterized protein" | 0.539 | 0.497 | 0.333 | 7.8e-86 |
| TAIR|locus:2051592 ELF8 "EARLY FLOWERING 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3941 (1392.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 765/1078 (70%), Positives = 879/1078 (81%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 473
LISSDTGAALDAFK K G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 474 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 534 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 653
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 654 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 713
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 714 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 774 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 833
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 834 FDEKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKY 893
FD KKI THV+YC HLL+AAK+H +KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 894 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEXXXXXXX 952
LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGG 958
Query: 953 XXXXXXXXXXX-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 1010
HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 959 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHD 1018
Query: 1011 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1065
LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1019 LLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
|
| ZFIN|ZDB-GENE-030131-3782 ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 4.5e-141, Sum P(2) = 4.5e-141
Identities = 176/478 (36%), Positives = 276/478 (57%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ +T Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKDLINQSTLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F+ VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + D +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASST--FVLPFFGLGQMYVYRRDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+E L+K D +A+I+L +
Sbjct: 361 AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASL 478
|
|
| DICTYBASE|DDB_G0277841 ctr9 "RNA polymerase II complex component" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 310/1097 (28%), Positives = 575/1097 (52%)
Query: 4 VYIPVQN-SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+YIP++ +++ +++ + LP D+ +++++LKAE APLDLWL +A EY+KQ ++ F ++
Sbjct: 10 IYIPIRGFNDQALKIDISSLP-DSKELIEVLKAELAPLDLWLKLANEYYKQDRITDFIEV 68
Query: 63 LEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
L++ + ++++YY D + +RIA+LNAL YYT LG E + +EE+F AT ++ KA R
Sbjct: 69 LKQVTDADLEQYYKDSKLDRIAMLNALASYYTQLGSQEKDKSRREEYFSNATFHFTKADR 128
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGR 177
ID H+P TW+GK LLL KG+ E+A S FK VL+ + N +PA LG AC+ FN+G
Sbjct: 129 IDPHQPLTWIGKAVLLLTKGDYERAESNFKQVLDLAKSNNTLPVLPAKLGSACILFNQGN 188
Query: 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
Y +L+ Y++ +Q + +C ++RLG+G C +KLG+ KA++AF+R L+LD +NVEA++ L
Sbjct: 189 YIKALDTYQKVIQQNSNCLPSVRLGLGYCYFKLGRTKKAKEAFKRVLELDRDNVEAMIGL 248
Query: 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
A++ + N+ I + M+ + A+++ P ++ LN+LANH+FF G++ V L A
Sbjct: 249 ALVLMNENQ---IPEAMKLILSAYQLAPTNSIVLNHLANHYFFRGEYNKVNTLGVAAFNN 305
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
T+ K+ S Y + R++H+ ++ A YY +V++ P ++ +GLGQ+ + D
Sbjct: 306 TDVAHIKAESAYLIGRAFHATQRWQDAIQYYHQAVQK--NPDLYL-AQFGLGQIHIHNED 362
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
+ A+ FE+VL P+N ETL+ LG +Y G + K+ I++
Sbjct: 363 YDKAILCFEQVLSKQPNNYETLQILGSLYKH-GSLYKSNVKSTTTTTSTTTTTNNNININ 421
Query: 418 ELL-ISSDTGAALDAFKTKAGEEVPIEVLN--NIGVIHFEKGEFESAHQSFKDALG---- 470
+S++ + KA E P + N +G + E E +A ++++ L
Sbjct: 422 NNNNLSNEIINKIKNVLKKATELNPNDSSNWFELGQV-LESTEVSTALEAYEKGLNLLKK 480
Query: 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV-ELPWNKVTVLFNLARLL 529
DGI + L+ + V+ +L + + G + + +T +NLARL
Sbjct: 481 DGI-VPSLEIQNNIAVLRHQKGLLVEAEQTYLDIIKQSGYQLNQFKSINITSTYNLARLY 539
Query: 530 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 589
E + A LY+ I+ ++ +Y D YLRL+ I K + + + E + E L + A
Sbjct: 540 ETMGQVNKAEELYKGIIKEHPNYYDCYLRLSCICKQQGDYYEAGEWIREVLDIQPDNQEA 599
Query: 590 LSMLGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRAPKLEA 648
++ G+L L ++W A++ F ++ D K ++YA+LSLGN Y A N + K
Sbjct: 600 WALYGNLHLYKEEWYPAQKNFEQITENPDNKNETYASLSLGNIYYNAKFSNPDKVEK--- 656
Query: 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 708
++ A++ Y RV+ ++ +N+YAANG G+++AEKG +++ + F Q++EA+ + P
Sbjct: 657 -YILNAEQFYNRVLTKNPTNIYAANGIGMIIAEKGNLNLAGETFLQIREASMDCI----P 711
Query: 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ-ILLYLARTHYEAEQWQDCKKSL 767
V +NLAH+Y ++G F A+K+Y+ CL+K + + I++YLA+ +++A ++ D K++L
Sbjct: 712 -VSVNLAHIYVSKGLFDNAIKLYEGCLKKSTSPKEIETIIMYLAKVYFDANRFYDSKQTL 770
Query: 768 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827
+AIH+ P N ++ F+ ++++ + L+K ++ A E + + ELE A R+ + L+
Sbjct: 771 KKAIHMYPHNLSIHFNLAISIEMQATIFLEKHQKNATETFNIIKELEFAQRLLTPLANTK 830
Query: 828 NLHLHGFDEKKINTHVEYCKHLLDAAKI-HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 886
+ F K TH + +L + + H
Sbjct: 831 STPKLNFSPSKAKTHQTSIEKILVSLRTEHESIVKIEADLSKKREAAFEEVKRLEEEKRI 890
Query: 887 XXXXKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEX 946
K LE+ KLE E+K ++EE + +E+ + A+ + + D E G ++
Sbjct: 891 RDLELKQQLEE-KLEAERKLAFEEEE---KTREELAKNNAAAAMID-DDYKDGEGGSTKK 945
Query: 947 XXXXXXXXXXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEE 1006
++ + AE+ +E+ E ++ +E + + EE
Sbjct: 946 RKKNKKDQQQQDDD----FDDQPAESKKKQKKEKKEKKEKKEK-KEKKKKSKKVSGEGEE 1000
Query: 1007 NANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD-ELQDSDGE 1065
A+D ++ +D +++++ + D + +++ ++ E ++ +GE
Sbjct: 1001 GADDNNDTEQQQEEMAED--GDHKEKKKKKKSKKDRKDKKDKKQKRKEKKQREKEEREGE 1058
Query: 1066 LRENDHKSNGGAALDDD 1082
+ + ++ DDD
Sbjct: 1059 EDDENEETENREEQDDD 1075
|
|
| UNIPROTKB|Q6DEU9 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 8.7e-109, Sum P(3) = 8.7e-109
Identities = 177/478 (37%), Positives = 273/478 (57%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASL 478
|
|
| WB|WBGene00007184 B0464.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
Identities = 289/1126 (25%), Positives = 526/1126 (46%)
Query: 4 VYIPVQNSEEE--VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++S E+ + + +LP D ++L IL+AE+A L W+ +A EY++Q +V+ F
Sbjct: 65 IAIPLKDSHEDEVIEINCSELP-DGEEVLQILEAEEAKLSYWIEVALEYYRQDRVDLFMM 123
Query: 62 ILEE-GSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
ILE GS ++ Y V+ +++ L+ L Y+ G E + +K + F AT +N A
Sbjct: 124 ILESAGSRAGLE--YEGVKQDQMRALDILAAYWMTQGYREKAKDKKSDFFSKATVLFNTA 181
Query: 121 SRIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175
+I M+E S + L + + E A F V++ + NV L+G+A + FN+
Sbjct: 182 DKIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIAFNK 241
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235
Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA++++P NV A+
Sbjct: 242 KDYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYNVSAMC 301
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295
L ++ L + ++ + R++ + +AL +LANHFFF + L A
Sbjct: 302 GLGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKEIERAWTLAWHAA 361
Query: 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355
+ K+ ++Y + R H++G ++ A YY + + N H +YGLGQ+ +
Sbjct: 362 TYNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEHTLA--HYGLGQMYIHR 419
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EKAQELLRKAAKID 406
+ A+ F+ V + P+N +T+K LG +Y VQL +K +++L K ++
Sbjct: 420 NEIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVE 479
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTK-----AGEEV-PI-EVLNNIGVIHFEKGEFE 459
D +A IDL +LL ++D +L+ ++ E + P E+LNN+G ++ ++E
Sbjct: 480 NDDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYE 539
Query: 460 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 519
A FK A L+ + T D + +L+ R + +H+ +
Sbjct: 540 KAEHHFKRAK------ERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------L 577
Query: 520 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 579
T+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+ + S + +
Sbjct: 578 TIRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQG 637
Query: 580 LKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGN-WNYFA 635
++ + P +++G+L ++W+ A++ F S + K D Y+ ++LGN W F
Sbjct: 638 VQFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGNVW--FE 695
Query: 636 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 695
L N R + E ++++A ++Y + + N+YAANG G VLA K ++ ++D+F+QV
Sbjct: 696 QLLNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQV 755
Query: 696 QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755
+E+ S + DVW+N+AHV + + A++MY + ++KF D+ + YLA+ +Y
Sbjct: 756 RESTS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYY 810
Query: 756 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELEN 815
A + K++L A+ N L+F+ + ++K + L+ + T+++V + + +L+
Sbjct: 811 RANMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSEQVTAAIDDLKF 870
Query: 816 AVRVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHXXXXXXXXXXXXXXX 871
A ++F ++S + + T + CK LL AK
Sbjct: 871 ADKIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEERRLM 930
Query: 872 XXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLR----QQEEHFQRVKEQWRSSTPA 927
K EK+KLED K LR + + R+ E
Sbjct: 931 EKQEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLRLSFIEMTKDVLRLPEIVEEKRRG 989
Query: 928 SKRRERSENDDDE-VGHSEXXXXXXXXXXXXXXXXXXHYETEYAEADMMDYREEPEDE-- 984
R+R +D DE V S + + A + E D
Sbjct: 990 GGGRKRRNDDGDEFVNDSSDAGNYDGEEGGEDGERRERRKKDKAAKKASRKKRERRDSGG 1049
Query: 985 -DASMNYREPIGQMNDQDDDVEENANDRLAA-----AGLEDSDVDDEMAPSITAARRRRA 1038
D++ + + ++D ++E + + +A A L S+ D+ P A
Sbjct: 1050 PDSNRRDEKKRKRKEERDRKLQEKLSAKQSAKIKSRAFLSSSESSDDDKPKPAA------ 1103
Query: 1039 LSESDDDEPFERQLRDNTDE--LQDSDGELRENDHKSNGGAALDDD 1082
+S DDE R D D DSD + K A +D D
Sbjct: 1104 --DSSDDEVDPRPPVDEFDSPTRTDSDSDRETTTKKKKKKAVVDSD 1147
|
|
| UNIPROTKB|G3V897 Ctr9 "SH2 domain binding protein 1 (Tetratricopeptide repeat containing), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 2.0e-87, Sum P(2) = 2.0e-87
Identities = 202/606 (33%), Positives = 322/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 472 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 527
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQS 599
Query: 588 NALSML 593
+ SML
Sbjct: 600 DTYSML 605
|
|
| MGI|MGI:109345 Ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 1.4e-86, Sum P(2) = 1.4e-86
Identities = 202/606 (33%), Positives = 322/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 472 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 527
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQS 599
Query: 588 NALSML 593
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|Q4QR29 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 4.9e-86, Sum P(2) = 4.9e-86
Identities = 180/478 (37%), Positives = 275/478 (57%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASL 478
|
|
| UNIPROTKB|Q6PD62 CTR9 "RNA polymerase-associated protein CTR9 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.1e-86, Sum P(2) = 6.1e-86
Identities = 202/606 (33%), Positives = 322/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 472 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 527
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQS 599
Query: 588 NALSML 593
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|F1S6V3 CTR9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 7.8e-86, Sum P(2) = 7.8e-86
Identities = 202/606 (33%), Positives = 322/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKT-------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471
+L +D AL A+ T K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 472 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 527
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQS 599
Query: 588 NALSML 593
+ SML
Sbjct: 600 DTYSML 605
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | PAFC901 | PAF1 complex component (1056 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00060987 | SubName- Full=Putative uncharacterized protein; (321 aa) | • | • | 0.605 | ||||||
 | PAFB901 | PAF1 complex component (620 aa) | • | • | 0.603 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1082 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-25 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-22 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-11 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 8e-10 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 6e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 6e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 7e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 9e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| pfam13371 | 73 | pfam13371, TPR_9, Tetratricopeptide repeat | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.002 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.002 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.003 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 0.003 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.004 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.004 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-25
Identities = 144/698 (20%), Positives = 246/698 (35%), Gaps = 89/698 (12%)
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
L G++E A +++ L D ++ A LG A + R+ ++ L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ L L LG + A A+++A+ L P N+ L+ALA + ++A E K + +
Sbjct: 196 LLLKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 259 RAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315
+ P Y +++ ++ E ET P + S
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNY---------EDARETLQDALKSAPEYLPALLLAGASE 305
Query: 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+ G+ E+A Y +K P+ L +QL+LG A+ L + PD+
Sbjct: 306 YQLGNLEQAYQYLNQILKYA--PN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LISSDTGAALDAFKT 434
L LG Y+ LG EKA E L KA ++DP +A A LG L D A+ +T
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
Query: 435 KAG-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 493
A + + + + G+F+ A + K + + + +
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKK------LEKKQPDNASLHNLLGAIYL 476
Query: 494 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 553
+ + FE + + + NLAR+ Q + A + +L +
Sbjct: 477 GKGDLAKAREAFE---KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533
Query: 554 DAYLRLAAIAKARNN----------------------------------LQLSIELVNEA 579
A L LA + N L+ ++ ++NEA
Sbjct: 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593
Query: 580 LKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGKDSYATLSLGNW---NYFA 635
P A MLG +L D KA +F+ + D + L+ NY
Sbjct: 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653
Query: 636 ALRNEKRAPK----------------LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 679
A+ + KRA + L A E AK++ + QH G +
Sbjct: 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713
Query: 680 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 739
+ + + + + + A S I L A GN A A+K + L+
Sbjct: 714 LRQKDYPAAIQAYRKALKRAPSSQNA------IKLHRALLASGNTAEAVKTLEAWLKT-- 765
Query: 740 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777
+ DA + LA + + + K + AP N
Sbjct: 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-22
Identities = 117/541 (21%), Positives = 214/541 (39%), Gaps = 46/541 (8%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143
A L+ LG YL + ++ A +Y KA+ +D + G L++G+
Sbjct: 364 AALSLLG--EAYLALGDFEK---------AAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
+A + + + D + A L G++ +L K+ + P L +
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-L 471
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G G L KAR+AF++AL ++P+ A LA +D+Q + + ++ I
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ---RFEKVLTI 528
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P A+ LA + TG E A + P + LA+ Y KG +K
Sbjct: 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKK 585
Query: 324 AGLYYMASVKEINKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A +A + E + LG+ QL GD A+++F+K+L + PD+ L L
Sbjct: 586 A----LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP 441
Y + KA L++A ++ P + +A I L +LL+++ T +A K+ +
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
Query: 442 IEVLNNI-GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 500
+ + G ++ + ++ +A Q+++ AL + + S + ++
Sbjct: 702 AALGFELEGDLYLRQKDYPAAIQAYRKAL----------KRAPS-----SQNAIKLHRAL 746
Query: 501 LFHRFENDGNHVELPW-----NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 555
L + W N + LA L D A Y+ ++ K D
Sbjct: 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
Query: 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615
LA + + + ++E ALK+ P L LG L ++ + +A R A +
Sbjct: 807 LNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865
Query: 616 A 616
Sbjct: 866 I 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-16
Identities = 133/645 (20%), Positives = 229/645 (35%), Gaps = 92/645 (14%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G G +EQA +L+ ++ A A ++ GR +++ AL + P
Sbjct: 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
P A+ L +G LG KA + +A +LDPEN A L + L + + +
Sbjct: 362 DPAALSL-LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP---SEAI 417
Query: 255 EKMQRAFEIYP-----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
++ A ++ P + L+YL + F + + P + +
Sbjct: 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--------PDNASLHN 469
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L Y KGD KA + ++ I +F L ++ ++ G+ A+ FEKVL
Sbjct: 470 LLGAIYLGKGDLAKAREAFEKALS-IEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVL 526
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE-LLISSDTGAA 428
I P N + AL +Y++ G E+A L KAA+++P++ + + L + L A
Sbjct: 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586
Query: 429 LDAFKTKAG-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV- 486
L A E +G G+ A SFK L L +
Sbjct: 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK------LLALQPDSALALLL 640
Query: 487 -IDASASMLQFKDM--QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 543
DA A M + L E ++ E LA+LL T +A + +
Sbjct: 641 LADAYAVMKNYAKAITSLKRALELKPDNTEA-------QIGLAQLLLAAKRTESAKKIAK 693
Query: 544 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----------------NGKYP 587
+ ++ + + + + +I+ +ALK +G
Sbjct: 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753
Query: 588 NA-----------------LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 630
A + L +L L D+ KA + ++ D+ L
Sbjct: 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA--PDNAVVL---- 807
Query: 631 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 690
N A L E + P+ + E+A +L + + G +L EKG+ D +
Sbjct: 808 -NNLAWLYLELKDPRALE-YAERALKL-------APNIPAILDTLGWLLVEKGEADRALP 858
Query: 691 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735
L + A + + +LA A G A A K L
Sbjct: 859 LLRKAVNIAPEA-----AAIRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-14
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
NL Y+ GDY++A YY ++ E++ + YY L KLG + AL ++EK
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELD--PDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LE+ PDN + LG Y +LG+ E+A E KA ++DP
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-13
Identities = 89/482 (18%), Positives = 172/482 (35%), Gaps = 72/482 (14%)
Query: 27 SDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL 86
+D+ + + L++ Y + G+ ++ ++ + D
Sbjct: 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-------------- 463
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
NA + LG I + + + A + + KA I+ ++ + +G +
Sbjct: 464 NASL--HNLLGAIYLGKGDLAK----AREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A F+ VL D N+ A+L A + G +++ + ++A +++P I + L
Sbjct: 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP---QEIEPALALA 574
Query: 207 RY------------------------------------KLGQLGKARQAFQRALQLDPEN 230
+Y G L KA +F++ L L P++
Sbjct: 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
AL+ LA A ++RA E+ P A LA + E
Sbjct: 635 ALALLLLADAYAVMKNYAKAIT---SLKRALELKPDNTEAQIGLAQLLLAAKR---TESA 688
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
+ A ++ P + + Y + DY A Y ++K I L +
Sbjct: 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI----KLHR 744
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
L G+ A+ E L+ +P++ AL +Y+ +KA + + K P +A
Sbjct: 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804
Query: 411 QAFIDLGELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 468
+L L + AL + +A + P +L+ +G + EKGE + A + A
Sbjct: 805 VVLNNLAWLYLELKDPRAL-EYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
Query: 469 LG 470
+
Sbjct: 864 VN 865
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-12
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKT 434
+DP +A+A+ +LG AL+A++
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G L G+ ++A ++ LE D DN A A + G+Y ++LE Y++AL+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P A +GL YKLG+ +A +A+++AL+LDP
Sbjct: 63 LDPDNAKAYYN-LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 32/127 (25%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464
+ P + +VLNN G +G E A Q
Sbjct: 98 LAPNNG--------------------------------DVLNNYGAFLCAQGRPEEAMQQ 125
Query: 465 FKDALGD 471
F+ AL D
Sbjct: 126 FERALAD 132
|
Length = 250 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 8e-09
Identities = 63/255 (24%), Positives = 98/255 (38%), Gaps = 16/255 (6%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHF 278
+ ALQ DP + EA L + A G EK +++A + L LA +
Sbjct: 45 LKNALQKDPNDAEARFLLG----KIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
G+ V + + G + + LA Y G E A Y ++
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA--YLGLGQLELAQKSYEQALA---ID 155
Query: 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
++ GL Q+ L F A ++VL P N + L G + + LG IE A
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 399 LRKAAKIDPRDAQAFIDLGELLISS--DTGAA--LDAFKTKAGEEVPIEVLNNIGVIHFE 454
RKA + P + + L +LI + A DA KA L ++ F+
Sbjct: 216 YRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK--ALVDFQ 273
Query: 455 KGEFESAHQSFKDAL 469
K +E A ++ +DAL
Sbjct: 274 KKNYEDARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-09
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTK 435
E L LG++Y +LG ++A E KA ++DP +A A+ +L AL+ ++ K
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE-K 59
Query: 436 AGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
A E P + N+G+ +++ G++E A ++++ AL
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
ALL + + G Y ++LE+Y++AL++ P + YKLG+ +A + +++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 224 LQLDPENVEALVALAVMDLQANE 246
L+LDP+N +A L + + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 74/383 (19%), Positives = 127/383 (33%), Gaps = 70/383 (18%)
Query: 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164
+E + A Q + K ID + L L G E+A + + E + +
Sbjct: 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
L A +G+ +L A P P A + +G + G L KA +F++ L
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLL 628
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ- 283
L P++ AL+ LA A ++RA E+ P A LA +
Sbjct: 629 ALQPDSALALLLLADAYAVMKNYAKAIT---SLKRALELKPDNTEAQIGLAQLLLAAKRT 685
Query: 284 -----------------HFLVEQLTETALAVTNHGP-----TKSHSYY-------NLARS 314
E + L ++ K+ L R+
Sbjct: 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+ G+ +A A +K L ++ L D+ A+ +++ V++ PD
Sbjct: 746 LLASGNTAEAVKTLEAWLKTHPNDA---VLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 375 NCETL-------------KALGH--------------------IYVQLGQIEKAQELLRK 401
N L +AL + + V+ G+ ++A LLRK
Sbjct: 803 NAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862
Query: 402 AAKIDPRDAQAFIDLGELLISSD 424
A I P A L L+++
Sbjct: 863 AVNIAPEAAAIRYHLALALLATG 885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 45/207 (21%)
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
IR+ + L + G L A++ +AL+ DP++ A +ALA+ L E
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-------- 82
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+A + + AL + + N
Sbjct: 83 ----KAEDSF---------------------------RRALTLNPNNGD---VLNNYGTF 108
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+G YE+A + ++++ P G LK GDF A + L+I P
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPAR-SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRK 401
E+L L +Y GQ + A+ L +
Sbjct: 168 RPESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 408 RDAQAFIDLGELLISSDTGAALDAFK--TKAGE----EVPIEVLNNIGVIHFEKGEFESA 461
+ + G L G A + +A E P L N G+ + G+F+ A
Sbjct: 97 NNGDVLNNYGTFLCQ--QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154
Query: 462 HQSFKDAL 469
+ AL
Sbjct: 155 EKYLTRAL 162
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 42/227 (18%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
+S D KA + + L A Y +QG +E ++ L++ + E D
Sbjct: 21 SSRTTDRNKAAKIRVQL----ALGYLEQGDLEVAKENLDK--ALEHDPDDYLAY------ 68
Query: 86 LNALGVYYTYLGKIETKQREKEE-----------------------HFILATQYYNKASR 122
AL +YY LG++E + + A Q + +A
Sbjct: 69 -LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
Query: 123 IDM--HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+ + G L G+ ++A L+ D +LL A + + RG+Y D
Sbjct: 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + +R Q + ++ LGI + R LG A + QL
Sbjct: 188 ARAYLERYQQTYNQTAESLWLGIRIAR----ALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 736 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ S LA + + +GD + L + + G Q++ G+F A
Sbjct: 63 NPEDLSIAKLATALYLRGD-ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEA 119
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
++ K + P + E LG QLG+ ++A+ R+A ++ P + +LG L+
Sbjct: 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179
|
Length = 257 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K + A +YY KA +D + G+ E+A ++ LE D DN A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ G+Y ++LE Y++AL++ P+
Sbjct: 72 YNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L +G YKLG +A + +++AL+LDP+N +A LA + + + +E ++A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKA 60
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
E+ P A A L ++ G++ + E AL +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 74/378 (19%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALG 90
+ A + WL++ R G + + ++ +A+
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK----------------LLALQPDSA 635
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L + + A +A + +G QLLLA E A
Sbjct: 636 LALLLLADAYAVMKNYAK----AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 151 FKIVLEADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
K L+ + + Y +++ Y++AL+ PS AI+L L
Sbjct: 692 AKS-LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL---- 746
Query: 210 LGQLGKARQAFQRA---LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
G +A + L+ P + ALA + L + K ++ Q + P
Sbjct: 747 -LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD---KAIKHYQTVVKKAPD 802
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A+ LN NLA Y + +A
Sbjct: 803 NAVVLN-------------------------------------NLAWLYL-ELKDPRALE 824
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
Y ++K + G + ++ G+ AL K + I P+ L
Sbjct: 825 YAERALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881
Query: 387 VQLGQIEKAQELLRKAAK 404
+ G+ +A++ L K
Sbjct: 882 LATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 403
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 404 KIDP 407
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQ 218
DN AL F G Y +++E Y++AL++ P + L KLG +A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA-EAYYNLALAYLKLGKDYEEALE 59
Query: 219 AFQRALQLDP 228
++AL+LDP
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 768
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 769 RAIHLAPSNYTLRFDAGVAMQK 790
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 398 LLRKAAKIDPR 408
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ A + KA D + + GE + A +++ L +N L
Sbjct: 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110
Query: 170 CVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+GR ++++ ++RAL + + +GLC K GQ +A + +RAL+LD
Sbjct: 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTL-ENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
P+ AL+ LA + +A + A R +E+ Q
Sbjct: 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 1e-05
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 16/226 (7%)
Query: 776 SNYTLRFDAGVAMQKFSASTLQKT--RRTADEVRST--VAELENAVRVFSHLSAASNLHL 831
+++ R A A + A L+K ++ ADE + + + A + A
Sbjct: 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
Query: 832 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA-----EEARRK 886
+ KK + K + AK EAA+ E + EAA + A A EEA++K
Sbjct: 1323 KAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 887 AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEK 946
A+ KK EK+K ++ +++ E ++ ++ + + A K+ + ++ +E +++
Sbjct: 1380 ADAAKKKAEEKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 947 RRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYRE 992
++K + +K D++ + E + AE E + ++A E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 2e-05
Identities = 30/128 (23%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 850 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 905
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 906 RLRQQEEHFQRVK--EQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 963
+ + ++ + K ++ + +K+ + ++ +E +E+ ++K + +K D++ +
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 964 HYETEYAE 971
E + A+
Sbjct: 1479 AEEAKKAD 1486
|
Length = 2084 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (111), Expect = 2e-05
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 5/259 (1%)
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKL 210
+ + + + + L + G +++LE + AL++ P+ A L + L KL
Sbjct: 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKL 72
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G+L +A + ++AL+L+ A AL + L + +E +++A + P +A
Sbjct: 73 GRLEEALELLEKALELELLPNLAE-ALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Query: 271 LNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329
LA + G + +L E AL + + + L + G YE+A
Sbjct: 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++K P + LG + LKLG + AL +EK LE+ PDN E L L + ++L
Sbjct: 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 390 GQIEKAQELLRKAAKIDPR 408
G+ E+A E L KA ++DP
Sbjct: 250 GRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 69/377 (18%), Positives = 127/377 (33%), Gaps = 44/377 (11%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 416 LGELLISSDT-GAALDAF--KTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472
L + LD KT +E E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID 155
Query: 473 I---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND--- 508
L+D + A +L+ + E
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 509 -GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 566
+ L N + VL LA L+E A L+ + YL+ A + +
Sbjct: 216 YRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVDFQK 274
Query: 567 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 626
N + + E + +ALK +Y AL + G E + + +A + A
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARR 333
Query: 627 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 686
L + +L +++A + + + A + G G F+
Sbjct: 334 LLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380
Query: 687 VSKDLFTQVQEAASGSV 703
+ + + E +
Sbjct: 381 KAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK----PHEFIFPYYGLGQVQLKLGD 357
P + + NLA GDY++A +++ + E L ++ L LGD
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 358 FRSALTNFEKVLEIYPD 374
+ AL EK L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (109), Expect = 3e-05
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
+L AL + A+ LG+L +A + + AL+L P + A +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L + + + + +E +++A E+ +A L E L A
Sbjct: 63 LLLAL-ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ + + GDYE+A Y +++ + +E LG + LG
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 357 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ AL EK L++ PD+ E L LG +Y++LG+ E+A E KA ++DP +A+A +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 416 LGELL 420
L LL
Sbjct: 242 LALLL 246
|
Length = 291 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
L A G Y ++L + AL +P A L +G + G+L +A + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA-LLLLGEALLRQGRLAEAAALLRAALA 59
Query: 226 LDPEN 230
DP++
Sbjct: 60 ADPDD 64
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 406 DPRDA 410
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 291 TETALAVTNHGPTKSH--SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YY 346
T + +V G S YN A + GDY +A + A +K P+ P YY
Sbjct: 125 TPGSASVDGDGAPVSPATKLYNAALDLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYY 182
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403
LG+ GD+ A F +V++ YP + + L LG +LG ++A L++
Sbjct: 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242
Query: 404 KIDPRDAQA 412
K P A
Sbjct: 243 KRYPGTDAA 251
|
Length = 262 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA-GLYY 328
AL L N ++ G + + E AL + +YYNLA +Y+ G YE+A Y
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---AYYNLAAAYYKLGKYEEALEDYE 58
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
A E++ + YY LG KLG + AL +EK LE+ P+
Sbjct: 59 KA--LELDP--DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 2e-04
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG-QL 137
+ + +L L LG + + EE A + KA +D
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEE----ALELLEKALALDPDPDLAEALLALGA 139
Query: 138 LLAKGEVEQASSAFKIVLEAD---RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L G+ E+A ++ LE D + ALL + GRY ++LE ++AL+++P
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L +GL KLG+ +A + +++AL+LDP+N EAL LA++ L+ + +
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 255 EKMQRAFEIY 264
EK
Sbjct: 260 EKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 852 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 911
AA R+ +Q AA+ A A + E Q R R++
Sbjct: 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA----ASAPEAAQARERRER 133
Query: 912 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAE 971
R ++ + + D E E+R + + ++D+ + AE
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE-------AE 186
Query: 972 ADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSIT 1031
REE + + R+ Q + +++ + DR D
Sbjct: 187 RGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-----D 241
Query: 1032 AARRRRALSESDDDEPF-----------ERQLRDNTDELQDSDGELREND 1070
R R + DD E +R+ R D + + ELRE+D
Sbjct: 242 DNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 764
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 765 KSLLRAIHLAP 775
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-04
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 895
++ VE K K E ++ E++N+ + AA +A AEE ++KAEE KK
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 896 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH--SEKRRRKGGK 953
+++K + K+ E + E+ + K++ +E +E+ +++ +
Sbjct: 1686 DEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 954 RRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDR 1011
+KK + ++ E E + + EE + E+ I + D++D+ D+
Sbjct: 1742 DKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 852 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK--RLRQ 909
A + R+ ++ R A RQAA+ E RKA+E KK EK+K ++ +K ++
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKK 1303
Query: 910 QEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYET-- 967
+E ++ +E ++ K E + D +E+ ++ + + +++ E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 968 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEEN 1007
E AEA E + DA+ E + ++ EE+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
Length = 2084 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + ++KA +++ +P + + QL KGE QA ++ ++ D D + + + +
Sbjct: 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443
Query: 173 FNRGRYSDSLEFYKRALQVHPSCP 196
+ G + S+ ++R + P P
Sbjct: 444 YKEGSIASSMATFRRCKKNFPEAP 467
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 854 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 911
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK--AKQA 129
Query: 912 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKD 958
+ E + ++++E + +E +++ ++K +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS--DTGAALDA 431
DN E LK LG+ +LG ++A E KA ++DP +A+A+ +L + D AL+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 432 FK 433
+
Sbjct: 61 LE 62
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 6e-04
Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 10/214 (4%)
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF---EIYPYCAMALNYLANHFFFT 281
+LD E + L + ++ + ++A ++ A+ALN
Sbjct: 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341
G+H +E L + + ++ P + SY A GD +KA + ++K ++ +
Sbjct: 345 GKH--LEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
Query: 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401
YY Q+ G+F A +++K +++ PD + LG + G I + R+
Sbjct: 402 ---YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
Query: 402 AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKT 434
K P + GELL+ + A++ F T
Sbjct: 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGD 357
YY+ A GDY A I F+ +P +Y LG+ GD
Sbjct: 3 YYDAALLVLKAGDYADA----------IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGD 52
Query: 358 FRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F V++ YP + + L LG +LG EKA+ L++ K P + A
Sbjct: 53 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 857 REAAEREEQQNRQRQEAARQA-ALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 915
ER E R+ R+ L E+ +E+ + E +LE+ + L + E
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
Query: 916 RVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMM 975
+ + R E +E+ E +R + + ++ + + E ++
Sbjct: 880 NERAS--LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 976 -DYREEPEDEDASMNYREPIGQMNDQDDDVEE 1006
D +E E+ S+ E N +DD EE
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 48/225 (21%)
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
+ + ++ E+ P + A+ G E+ + AL + YY+ A+
Sbjct: 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQ 407
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+ KG++ +AG Y K I+ +FIF + LG Q K G S++ F + + +P
Sbjct: 408 LHFIKGEFAQAGKDYQ---KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
Query: 374 DNCETLKALGHIYVQLGQIEKAQE------------------------------------ 397
+ + G + + + ++A E
Sbjct: 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524
Query: 398 -----LLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKA 436
L KA IDP A + +LL+ D AL F+ A
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 404
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 405 IDPRDAQA 412
+DP + +A
Sbjct: 222 LDPANIRA 229
|
Length = 287 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L G+ ++A +A + L ALL +GR +++ + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 194 S 194
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ +L +R L + P P R GL +LG A + L+L P+ +
Sbjct: 6 LREEDFERALAVVERLLLLAPDDPYERRDR-GLLYAQLGCFQAALADLEYFLELCPDAPD 64
Query: 233 ALVALAVM 240
A +
Sbjct: 65 AERIREQL 72
|
Length = 73 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.001
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 857 REAAEREEQQNRQRQEAARQAA-----LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 911
+E E+EEQ +R+E R+AA EEARR+ EE+ + EK K + E++ ++QE
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 912 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 955
E + K++ + A + ER + ++ ++ R K+R
Sbjct: 104 EQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 651 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 710
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 711 WINLAHVYFAQGNFALAMKMYQNCLRKFY 739
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFE 366
NL + GDY++A Y +++ E YY L LKLG D+ AL + E
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNLALAYLKLGKDYEEALEDLE 62
Query: 367 KVLEIYP 373
K LE+ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.002
Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 797 QKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK--INTHVEYCKHLLDAAK 854
++ ++ AD + E + A + A+ +EK E K DAAK
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 855 IHREAAEREEQQNRQRQEAARQA---ALAEEARRKAEEQKKYLLEKRKLEDEQKRL---R 908
E ++ ++ ++ +E ++A A A++KA+E KK EK+K ++ +K+ +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 909 QQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 968
+ +E ++ +E ++ K E + D+ + E ++ K++ ++ ++ +
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Query: 969 YAEA 972
AEA
Sbjct: 1505 AAEA 1508
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 852 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 911
A ++ ++ AE +++ ++ AEEA+++AEE KK E +K E+E+K++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 912 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 947
+ ++ E+ R A E E D+ +K+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
Length = 2084 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+G KLG+ +A + +++AL+L+P N
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 EVEQASSAFKIVLEADRDNVP--ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
E+E + + L+ + + LLG+A GR SD+L Y+ AL++ P I
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRA--YMALGRASDALLAYRNALRLAGDNP-EIL 193
Query: 201 LGIGLCRYKL--GQLG-KARQAFQRALQLDPENVEALVALA 238
LG+ Y Q+ KAR ++AL LDP N+ AL LA
Sbjct: 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234
|
Length = 287 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 826 ASNLHLHGFDEKKINT-HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEAR 884
A LH + KK T K R AAERE NR+ ++ A AR
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAERE--INREARQERAAAMARARAR 379
Query: 885 RKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSEND 937
R A + KK L +E + EE + ++T A RE S+ D
Sbjct: 380 RAAVKAKKKGL-IDASPNEDT-PSENEESKGSPPQV-EATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 836 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 894
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 895 LEKRKLEDEQKRLRQQEEHFQRVKEQWRS 923
+ KLE +KRL QEE V E R
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAVRE 92
|
Length = 198 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 406 DPRDAQAFIDLGELLI 421
DP ++L + L+
Sbjct: 370 DPNSPLLQLNLAQALL 385
|
Length = 484 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 60/327 (18%), Positives = 116/327 (35%), Gaps = 34/327 (10%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++ Y +A++ P C LG K + AL+LDP+ +
Sbjct: 138 YRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195
Query: 233 ALV------------ALAVMDL---------------QANEAAGIRKGMEKMQRAFEIYP 265
AL A A++DL QA E + K + E P
Sbjct: 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP 255
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
++ ++ N+ L ++ G + S + E A
Sbjct: 256 ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+ A E I G + G AL + K +E+ P ++ +
Sbjct: 316 AFEKALDLGKLGEKEAI-ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LISSDTGAALDAFKTKAGEEVPIEV 444
++LG +KA+E KA K++ D + +L I + A ++ K+ + P +
Sbjct: 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ-KSIDLDPDFI 433
Query: 445 LNNI--GVIHFEKGEFESAHQSFKDAL 469
++I GV +++G S+ +F+
Sbjct: 434 FSHIQLGVTQYKEGSIASSMATFRRCK 460
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-ALQV 191
+ + L+ + +A+ K L+A +N A L A G + LQ
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198
Query: 192 HPSCPGAIRLGIGLCRYKLGQLGKAR--QAFQRALQLDPENVEALVALAVMDLQA--NEA 247
++ I L L Q Q QR L DP++VEA +ALA NEA
Sbjct: 199 QDKAAHGLQAQIEL----LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEA 254
Query: 248 A 248
A
Sbjct: 255 A 255
|
Length = 304 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584
A L ++ D A + L + D RL + + L I+ + LK +
Sbjct: 269 YAERLIRLGDHDEAQEIIEDALKRQWD--PRLCRLIPRLRPGDPEPL-IKAAEKWLKQHP 325
Query: 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 627
+ P LS LG L LKN W KA E AA YA L+
Sbjct: 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV-------HPSCPGAIRLGIGLCRYKLGQLGKA 216
AL A V G Y ++LE ++AL++ HP + LG +A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPET-ARALNNLARLYLALGDYDEA 65
Query: 217 RQAFQRALQLDPE 229
+ ++AL L
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.004
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 857 REAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 916
+E ER EQ+ + R E A E R + EE+ + E+R E E+K R+ EE ++
Sbjct: 41 QEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQ 100
Query: 917 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 950
+E+ K++E +E E + R+
Sbjct: 101 EQEE---QERIQKQKEEAEARAREEAERMRLERE 131
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 18/241 (7%)
Query: 859 AAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRL----------- 907
A+ + ++ + +E ++ E+ ++K + +++ K K E ++KR
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Query: 908 ----RQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 963
R +EE +R + + S P +++ N E EK+R+ + K
Sbjct: 154 VEEPRDREEEKKRERVR-AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 964 HYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1023
E E D RE R+ +++ A+
Sbjct: 213 VNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSK 272
Query: 1024 DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDS--DGELRENDHKSNGGAALDD 1081
T+ R A S P + ++ LQD+ G++ N + +D
Sbjct: 273 RTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDED 332
Query: 1082 D 1082
D
Sbjct: 333 D 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1082 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.98 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.92 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.85 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.78 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.77 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.77 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.69 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.69 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.68 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.65 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.63 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.38 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.34 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.32 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.3 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.3 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.14 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.07 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.0 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.86 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.85 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.85 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.82 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.72 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.68 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.68 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.59 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.58 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.57 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.55 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.48 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.39 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.38 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.38 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.33 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.23 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.21 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.15 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.05 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.92 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.9 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.9 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.85 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.82 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.78 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.7 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.69 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.64 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.61 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.61 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.54 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.51 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.49 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.49 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.48 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.47 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.45 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.34 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.19 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.15 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.15 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.15 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.14 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.14 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.1 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.07 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.07 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 97.03 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.02 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.02 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.97 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.97 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.95 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.91 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.86 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.83 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.78 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.74 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.73 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.62 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.56 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.55 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.54 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.37 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.29 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.24 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.18 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.12 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.09 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.09 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.02 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.93 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.9 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.9 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 95.89 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.88 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.83 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.82 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.81 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.73 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.7 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.61 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.5 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.42 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.4 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.31 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.29 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.08 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.82 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.78 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.61 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.6 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 94.55 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.38 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.37 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.09 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.08 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 93.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.77 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.63 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.49 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.29 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.88 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.85 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 92.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.83 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 92.76 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 92.67 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.67 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 92.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.43 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.42 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.37 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.28 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.93 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 91.77 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.62 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 91.49 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 91.47 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 91.37 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.27 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 90.95 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.5 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 90.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.63 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 89.6 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.58 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.34 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 89.27 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 89.26 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 88.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 88.52 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 88.41 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.39 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 88.26 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.13 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.99 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.7 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 87.53 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.39 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 87.29 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.1 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.93 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.23 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 85.6 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 85.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.02 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 84.98 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 84.56 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 84.45 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 84.27 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 83.61 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 83.59 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.46 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 83.45 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.26 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.76 | |
| PF12854 | 34 | PPR_1: PPR repeat | 81.83 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 81.57 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.93 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.75 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.55 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-119 Score=1008.37 Aligned_cols=994 Identities=40% Similarity=0.649 Sum_probs=889.4
Q ss_pred CceeeeccCCCCceEEEeCCCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001414 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1082)
Q Consensus 1 ~~~~~ip~~~~~~~v~i~~~~l~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~ 80 (1082)
|+||+|||+++++||+||+++|| |++||++||+.|.+++++|+.+|.+||++|++++|+.||++++.. ....|.+...
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~-~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLID-ANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhc-ccchhcchHH
Confidence 57999999999999999999999 999999999999999999999999999999999999999999843 4456888899
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al~~~ 158 (1082)
+++.+++.||.+|..+|...+.+..++..+..|+.+|+.+..++......|+..+..++..|.. +.|...|..+++..
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988899999999999999999999999999999999999988875 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
|+|+.++++.|++.+..|+|..|+.+|++++..+|...+++++++|.|++++|+.+.|+..|.++++++|.++.+++.||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001414 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1082)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1082)
.+.+...+...+..++..+.+++..+|.+|.+++.|+.+|+..|+|..+..+...++..+...+..++++|++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 001414 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1082)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1082)
|+|++|..+|.++++. .+..++.+++++|++|+..|+++.|+.+|+++++..|++.+++..||.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999986 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 468 (1082)
Q Consensus 395 A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 468 (1082)
|..++.+++...|.+..+|+.++.++..+++..++.+|.. ......++++++++|..++..|++..|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 9999999999999999999999999988888888888887 3455599999999999999999999999999999
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001414 469 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+....-.. .... ....+.+..||+|+++...+++..|...|..+++.
T Consensus 479 ~~~~~~~~--------------------------------n~de-~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVA--------------------------------NKDE-GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhc--------------------------------Cccc-cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 87411000 0000 01234778999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcC-CCCcHHHHHH
Q 001414 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLS 627 (1082)
Q Consensus 549 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~d~~~~~~ 627 (1082)
+|.++++|+++|.+....++..+|..+++.++..+..+|.+|.++|.+|++...|..|.+.|+.+++.. ..+|+|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988854 3359999999
Q ss_pred hHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001414 628 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707 (1082)
Q Consensus 628 Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 707 (1082)
|||+ |+...+...+++..+++++++|++.|.++|+.+|.|.+|.+++|++++..|++..|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9998 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 708 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
+++|+|+||||+.+|+|..||++|+.|+++|...+++.++.+||++|+..|.+.+|+.++.+|+++.|.++.+.||+|++
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 89999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001414 788 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE-EQQ 866 (1082)
Q Consensus 788 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-e~~ 866 (1082)
+++.+..+++..++|+++|..++.+|+.|+++|++|+..+++ +|+++.+.+++++|+++++++..|+.++++. |++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998864 8999999999999999999999999988754 445
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCchhhhhhccCCCCccccc
Q 001414 867 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH 943 (1082)
Q Consensus 867 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1082)
.++|+ +.+++.++.+|++|++||++..++..+++++|.++..+.++.|.+..+.|+.+++..+++ .+++ .
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~---~~~~----~ 909 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKR---GDDS----D 909 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCC---CCcC----c
Confidence 54555 566666778889999999999999888888888888888889999999999998876432 2112 2
Q ss_pred cccccccCCcccccccCcCcc-ccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCCC
Q 001414 944 SEKRRRKGGKRRKKDKSSRSH-YETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAAAGLEDS 1020 (1082)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 1020 (1082)
+.-++||||+||||++.++.+ +..+++|.+.+++...+........+++++.+. ...+-+++++.++ ..+..+++++
T Consensus 910 ~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~~ 989 (1018)
T KOG2002|consen 910 SDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREASEESDRP 989 (1018)
T ss_pred ccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchhhccCCc
Confidence 444555666655554333333 344445667777777777776666665333222 2233344445555 8888999887
Q ss_pred -CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001414 1021 -DVDDEMAPSITAARRRRALSESDDDEPF 1048 (1082)
Q Consensus 1021 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1082)
|+|.|..+++. .||++++|.|||..++
T Consensus 990 ~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 990 IESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred cccccccCcccc-cccchhhccccccccc
Confidence 77777888888 9999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=538.49 Aligned_cols=710 Identities=20% Similarity=0.233 Sum_probs=496.3
Q ss_pred HHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHH
Q 001414 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (1082)
Q Consensus 32 ~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~ 111 (1082)
++...|.....|+.+|..++.+|++++|+.+++.++...+ ....++..+|.++...|+..
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~----------- 210 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIE----------- 210 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhcCCHH-----------
Confidence 4455667777888888888888888888888887755422 22345666677777766655
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+..|++++..+|.++.+++.++.+++..|++++|...++.++...|+++.+++..|.+++..|++++|+..|++++..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666665556666666666666666665555555555555555555555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
+|+. ...++.+|.++..+|+++.|...|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 366 (899)
T TIGR02917 291 APEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAAL 366 (899)
T ss_pred CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 5554 33444555555555555555555555555555555555555555555554 4555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----------------
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---------------- 335 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 335 (1082)
..++.++...|++++|..++.+++.. .|..+.+++.+|.++...|++++|+..|.+++...
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 55555555555555555555444432 13333344444444444444444433333332211
Q ss_pred ---------------CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 336 ---------------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1082)
Q Consensus 336 ---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1082)
...|.....+..+|.++...|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 03455566677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001414 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 478 (1082)
Q Consensus 401 kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 478 (1082)
+++...|.+..++..++.++ ..|++++|+..+.+ ....+.....+..++.++...|++++|+.++++++...+....
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 602 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE- 602 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH-
Confidence 77777777777777777777 77777777777776 3344555566677777777777777777777777653321100
Q ss_pred ccccchhhhhhhhhHHh----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHH
Q 001414 479 DSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 554 (1082)
Q Consensus 479 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 554 (1082)
........... ......+..+.. ..|.++.+++.++.++...|++++|...|++++..+|++..
T Consensus 603 ------~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 603 ------AWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 00000000000 011222222221 45677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHH
Q 001414 555 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 634 (1082)
Q Consensus 555 a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~ 634 (1082)
++..++.++...|++++|+.+++.+....|.++..+..+|.++...|++++|+..|++++...|.. ..+..++.+ |.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HH
Confidence 999999999999999999999999999999999999999999999999999999999999887764 556677877 77
Q ss_pred HHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 001414 635 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 714 (1082)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 714 (1082)
.. |++++|...+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| +++.++.++
T Consensus 748 ~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l 810 (899)
T TIGR02917 748 AS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNL 810 (899)
T ss_pred HC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Confidence 77 9999999999999999999999999999999999999999999999999887 678999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHh
Q 001414 715 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS 794 (1082)
Q Consensus 715 a~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~ 794 (1082)
|+++...|+ .+|+.+|++++.. .|.++.++..+|.+++..|++++|+.+|+++++..|.++.++++++.++...|.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~- 886 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR- 886 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-
Confidence 999999999 8899999999987 577788899999999999999999999999999999999999999998776653
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001414 795 TLQKTRRTADEVRSTVAELENAVRVFSHL 823 (1082)
Q Consensus 795 ~l~~~~~~~~~~~~a~~~l~~A~~~f~~l 823 (1082)
.++|+++|..+
T Consensus 887 ------------------~~~A~~~~~~~ 897 (899)
T TIGR02917 887 ------------------KAEARKELDKL 897 (899)
T ss_pred ------------------HHHHHHHHHHH
Confidence 66677766655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=528.94 Aligned_cols=732 Identities=20% Similarity=0.216 Sum_probs=594.0
Q ss_pred CCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh----------------------h---
Q 001414 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY----------------------Y--- 75 (1082)
Q Consensus 21 ~l~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~----------------------~--- 75 (1082)
+...-...+...+...|.....|+.+|.+|+.+|++++|+..+++++...+... +
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~ 116 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhccc
Confidence 334445566677788999999999999999999999999999999876533210 0
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 76 -ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154 (1082)
Q Consensus 76 -~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1082)
....+....++..+|.+|...| ++.+|+..|++++..+|.++.+++.+|.+++..|++++|+..++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 117 TLLDDEGAAELLALRGLAYLGLG-----------QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred ccCCchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0011122233444444444444 4559999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
+..+|.+..+++.+|.+++..|++++|+..|++++..+|.+ ..+++.++.++...|++++|...+.+++...|.++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 264 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH 264 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999999999999999999999999998 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 001414 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1082)
Q Consensus 235 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~ 314 (1082)
+..|.++...|+ +.+|+..|.+++..+|.+..++..++.+++..|+++.|...+..++... |....++..++.+
T Consensus 265 ~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~ 338 (899)
T TIGR02917 265 YLKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASI 338 (899)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 999999999998 9999999999999999999999999999999999999999999998654 5667888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001414 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394 (1082)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 394 (1082)
+...|++++|+..+.+++. ..|.....+..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++
T Consensus 339 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 9999999999999999987 5677778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001414 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472 (1082)
Q Consensus 395 A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 472 (1082)
|+..|.+++...|........++..+ ..|++++|+..+.. ....+..+.++..+|.++...|++++|+.+|.+++...
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 99999999999999988888888888 99999999999998 44556678899999999999999999999999998754
Q ss_pred hhhhhcccccchhhhhhhhhHHh----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001414 473 IWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+.... ........... ......+..+.. ..|.+..++..++.++...|++++|..++.+++..
T Consensus 496 ~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 496 PDFFP-------AAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred CCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32110 00000000000 112223333222 45666777777888887788888888888888877
Q ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHh
Q 001414 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 628 (1082)
Q Consensus 549 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~L 628 (1082)
+|.+...++.++.++...|++++|+.++++++...|.++.+|..+|.++...|++++|+..|++++...|. ++.++..+
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 641 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLL 641 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 88777777788888888888888888888888777877888888888888888888888888887777665 56667777
Q ss_pred HhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001414 629 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 708 (1082)
Q Consensus 629 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 708 (1082)
|.+ |... |++++|+..|.+++..+|++..+++.++.++...|++++|+.++..+....| .++
T Consensus 642 ~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~ 703 (899)
T TIGR02917 642 ADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-----KAA 703 (899)
T ss_pred HHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----CCh
Confidence 777 7766 7788888888888888888888888888888888888888888888877776 567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 788 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~ 788 (1082)
.++..+|.++...|++++|+..|+.++... |. ..++..++.++...|++.+|...+++++...|+++.+++++|.++
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC-chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777888888888888888888888888763 22 266777888888888888888888888888888887777777766
Q ss_pred HHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 789 QKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 789 ~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
...+ ..++|..+|.++....
T Consensus 781 ~~~g-------------------~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 781 LAQK-------------------DYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHCc-------------------CHHHHHHHHHHHHHhC
Confidence 5544 4788999999998654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=404.40 Aligned_cols=632 Identities=17% Similarity=0.163 Sum_probs=523.3
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhc------CCCC--hhhHHHHHHHHHHc-----------CCH
Q 001414 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHE--PSTWVGKGQLLLAK-----------GEV 144 (1082)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~------~p~~--~~~~~~~a~~~~~~-----------g~~ 144 (1082)
.+|..+|.-|...|+.+ +.+.+++.++.. ++.. ..++..+|.-+... ..+
T Consensus 42 e~wi~~AleYy~~gk~e-----------efi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~ 110 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTE-----------EFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELF 110 (1018)
T ss_pred hHHHHHHHHHHhcccHH-----------HHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 46788899999999888 788888877611 1111 12333333333222 236
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 222 (1082)
..|..+|..+-+++-....-++..+..+...|.. +.|...|..++...|.+ ...+++.|.+.+..|+|..|+.+|.+
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHH
Confidence 6788888888777766666666677766666655 99999999999999999 67789999999999999999999999
Q ss_pred HHhhCCCC-HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcc
Q 001414 223 ALQLDPEN-VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL---VEQLTETALAVT 298 (1082)
Q Consensus 223 al~~~p~~-~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~ 298 (1082)
++.++|.. ++..+.+|.++...++ .+.|+..|.++++++|.++.++..|+.+-....+.+. +..++..+.
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~---~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay--- 263 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGM---SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY--- 263 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccc---hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH---
Confidence 99999974 5667889999999999 9999999999999999999999999998888777654 555555554
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH
Q 001414 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CE 377 (1082)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~ 377 (1082)
..++.+|.+...++..|+..|+|..+..+...++......+-....++.+|.+|..+|+|++|..+|..+++.+|++ .-
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 55677889999999999999999999999999997543444556679999999999999999999999999999998 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC----CHHHHHHHHHh-hcCCCCCHHHHHHHHHH
Q 001414 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS----DTGAALDAFKT-KAGEEVPIEVLNNIGVI 451 (1082)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~----~~~~Al~~l~~-~~~~~~~~~~~~~la~~ 451 (1082)
.++.+|..|...|+++.|+.+|++++...|++..+...||.+| ..+ ..+.|..++.+ ....+.+.++|..++.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 443 45677777777 55667888999999998
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh
Q 001414 452 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 531 (1082)
Q Consensus 452 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 531 (1082)
+.... ...++..|..|+..-. .. ..+.-+.++.++|..++.
T Consensus 424 ~e~~d-~~~sL~~~~~A~d~L~---------------------------------~~-----~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 424 LEQTD-PWASLDAYGNALDILE---------------------------------SK-----GKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhcC-hHHHHHHHHHHHHHHH---------------------------------Hc-----CCCCCHHHHHhHHHHHHH
Confidence 86654 4445999999886210 00 122357899999999999
Q ss_pred cCChHHHHHHHHHHHHh-----CCC-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 532 IHDTVAASVLYRLILFK-----YQD-----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~~-----~p~-----~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
.|++..|...|..++.. +++ +....+++|.++...+++..|...|...++.+|...+++..+|-+....+
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~ 544 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN 544 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence 99999999999999876 222 23468999999999999999999999999999999999999997777888
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVL 679 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~ 679 (1082)
+..+|...++.++..... ++.++..+|++ |+.. ..+..|..-|..+++.-- .|+++...||.++
T Consensus 545 ~~~ea~~~lk~~l~~d~~-np~arsl~G~~-~l~k------------~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNIDSS-NPNARSLLGNL-HLKK------------SEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred CcHHHHHHHHHHHhcccC-CcHHHHHHHHH-HHhh------------hhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 999999999999998766 78888889999 8887 677777776766665432 4889999999988
Q ss_pred Hhc------------CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001414 680 AEK------------GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 747 (1082)
Q Consensus 680 ~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~ 747 (1082)
... +.+.+|+.+|.+++..+| .+..+-.-+|.|+...|++..|+.+|.++.+. ...++.+|
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-----kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~ 683 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-----KNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVW 683 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-----chhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCcee
Confidence 753 567899999999999998 67778889999999999999999999999986 34568899
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcchhhHHHHHHHHHHH
Q 001414 748 LYLARTHYEAEQWQDCKKSLLRAIHLAP--SNYTLRFDAGVAMQKFSA 793 (1082)
Q Consensus 748 ~~La~~~~~~g~~~eA~~~l~~al~~~p--~~~~~~~nla~~~~~~~~ 793 (1082)
.+||.||...|+|..|++.|+.+++..- +++.+...||-+|...+.
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998754 567888888888766554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=445.22 Aligned_cols=621 Identities=17% Similarity=0.088 Sum_probs=506.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1082)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1082)
...+...+.++...++.+ .|.+.+.+++.++|+++.++..++.+++..|++++|...+++++..+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 345666677777777766 999999999999999999999999999999999999999999999999997
Q ss_pred HHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001414 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 163 ~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
.+. +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678899999999999999999999988873322223334444569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC----
Q 001414 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (1082)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~---- 302 (1082)
+|+++.++..+|.++...|+ +.+|+..+.+++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876554332221111111122223333333333222211111
Q ss_pred -------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1082)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1082)
........+|.++...|++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111223568899999999999999999998 678888999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh
Q 001414 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1082)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~ 434 (1082)
+.+|++.. ....+|.++...|++++|+..|++++..+|.+..++..++.++ ..|++++|+..|.+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99987642 2234588899999999999999999999999999999999999 99999999999999
Q ss_pred -hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcC
Q 001414 435 -KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 513 (1082)
Q Consensus 435 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 513 (1082)
....+....++..++.++. .+++++|+.++..+....+. .+. ..
T Consensus 411 aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~------------------~~~----~~------------ 455 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRR------------------SID----DI------------ 455 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH------------------HHH----HH------------
Confidence 4455677788888998875 56789999888764331100 000 00
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
........+..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+++.+
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 00112345778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCcH---------HHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 594 GDLELKNDDWVKAKETFRAASDATDGKDS---------YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~~~~d~---------~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
+.++...+++++|+..++++......... ...+.+++. +... |++++|+.+++ .
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~----~ 598 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR----Q 598 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH----h
Confidence 99999999999999999986543221111 112344555 5555 99999998876 6
Q ss_pred cCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCH
Q 001414 665 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 744 (1082)
Q Consensus 665 ~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 744 (1082)
+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|...|++++|+..|+.++.. .|.++
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~ 671 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL 671 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh
Confidence 899999999999999999999999999999999998 78999999999999999999999999999886 56778
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 779 (1082)
.++..+|.++...|++++|.++|++++...|.++.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 89999999999999999999999999999887764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=444.85 Aligned_cols=646 Identities=14% Similarity=0.119 Sum_probs=532.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001414 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1082)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~ 116 (1082)
+.+....+..+.....+++.+.|.+.|++++...+ +.+.++..++.+++..|+.+ +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 44666788899999999999999999999877644 34567888899999998888 99999
Q ss_pred HHHHHhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001414 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1082)
Q Consensus 117 ~~~al~~~p~~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1082)
++++++++|.++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|++.
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 56678899999999999999999999988854 2223333344569999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-------------
Q 001414 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1082)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1082)
+|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 78899999999999999999999999987655432221111100001111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1082)
Q Consensus 247 ----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1082)
......|...+.+.....++.......+|..+...|++++|+..|.+++.. .|.++.+++.+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHH
Confidence 111233444444433332222223345688899999999999999999975 4777899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001414 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1082)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1082)
+|+.+|.++++..+..+.. ......+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999843322221 11234568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCC----------CCCHHHHHHHHHHHHHcCCHHHH
Q 001414 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE----------EVPIEVLNNIGVIHFEKGEFESA 461 (1082)
Q Consensus 392 ~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A 461 (1082)
+++|+..|++++..+|.+..++..++.++..+++++|+.++...... ......+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999667889999988762211 11234567789999999999999
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001414 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541 (1082)
Q Consensus 462 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 541 (1082)
+..|++++. ..|.++.+++.+|.+|...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 6788899999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC----------hHHHHHhhhhhhcccchHHHHHHHH
Q 001414 542 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 611 (1082)
Q Consensus 542 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~ 611 (1082)
|++++..+|.++.+++.++.++...+++++|+.+++++.....+. ......++..+...|++++|+.+++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998764322111 1123467888899999999999987
Q ss_pred HhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHH
Q 001414 612 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 691 (1082)
Q Consensus 612 ~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~ 691 (1082)
..|. ++..++.+|.+ |... |++++|+..|++++..+|+++.++.+++.++...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3454 66778889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhccHHHHHHHH
Q 001414 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 767 (1082)
Q Consensus 692 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~----~~~~~~~La~~~~~~g~~~eA~~~l 767 (1082)
|++++...| +++.++..+|.++...|++++|+.+|++++...+..+ +..++..+|+++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998887 7788999999999999999999999999998753322 2456677899999999999999999
Q ss_pred HHHHh
Q 001414 768 LRAIH 772 (1082)
Q Consensus 768 ~~al~ 772 (1082)
++|+.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99986
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=385.36 Aligned_cols=462 Identities=20% Similarity=0.255 Sum_probs=414.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
+......+.++.-.++.|+|.+|.+....+...+|.+...++.++.++++..+++.....-..+++.+|.. ...+.++|
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHH
Confidence 44445688899999999999999999999999999999999999999999999999999999999999998 88899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 001414 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1082)
.++...|++..|+..|+.++++.|+..++|..+|.++...|+ ...|..+|..+++++|....
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~c--------------- 185 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYC--------------- 185 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhh---------------
Confidence 999999999999999999999999999999999999999999 99999999999999987763
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 001414 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1082)
Q Consensus 285 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1082)
+...+|..+...|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..
T Consensus 186 ----------------------a~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 186 ----------------------ARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred ----------------------hhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHH
Confidence 344566667777888888888888887 6788888899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHH
Q 001414 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEV 444 (1082)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~ 444 (1082)
|+++++++|+.+++|++||.+|...+.++.|+..|.+++.+.|++. .+
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A--------------------------------~a 288 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA--------------------------------VA 288 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch--------------------------------hh
Confidence 9999999999999999999999999999999999999998888765 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHH
Q 001414 445 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524 (1082)
Q Consensus 445 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 524 (1082)
+-++|.+|+.+|..+.|+..|++++. ..|..+.++.+
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F~~Ay~N 325 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNFPDAYNN 325 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCchHHHhH
Confidence 56677888888999999999999888 67888899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchH
Q 001414 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 525 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 604 (1082)
+|.++...|+..+|..+|.+++..+|+++++.++||.++...|.+++|..+|.+++..+|....++.++|.+|..+|+++
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 001414 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 684 (1082)
Q Consensus 605 ~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~ 684 (1082)
+|+.+|+.++.+.|. -..++..+|+. |-.+ |+...|++.|.+++..+|....+..+||.+|...|+
T Consensus 406 ~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 999999999998887 77788889999 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCH
Q 001414 685 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 724 (1082)
Q Consensus 685 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~ 724 (1082)
+.+|+..|+.++.+.| +.|+++.|+++++.-..++
T Consensus 472 i~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 472 IPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred cHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 9999999999999998 8899999999988765544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=375.46 Aligned_cols=453 Identities=20% Similarity=0.261 Sum_probs=431.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
.|+|.+|.++++.+...||.+...+..++.++++..+++.....-..+++.+|...+++-.+|.++...|+++.|+.+|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 35666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1082)
.++.+.|+. .+.|+++|.|+...|+...|..+|..+++++|....+...+|.++...|. ..+|..+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 88999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHH
Q 001414 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1082)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1082)
...+|..||-++..+|+...|+..|++++.. +|....+|+++|.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 9999999999999999999999999999955 588889999999999999999999999999998 7789999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001414 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1082)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~ 425 (1082)
++|.+|+.+|.++-||.+|++++...|+.+.++.++|.++...|+..+|..+|.+++.+.|+++++..+||.++ +.|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhh
Q 001414 426 GAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 504 (1082)
Q Consensus 426 ~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1082)
+.|..+|.. ..-.+......+++|.+|.++|++++|+.+|++++.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---------------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---------------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh----------------------------------
Confidence 999999998 556677788999999999999999999999999998
Q ss_pred hccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Q 001414 505 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584 (1082)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p 584 (1082)
+.|..+.++.++|..|..+|+...|++.|.+++..+|.+++++.+||.+|...|+..+|+..|+.++++.|
T Consensus 417 ---------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 417 ---------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred ---------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhhhhhcccchHHHHHHHHH
Q 001414 585 KYPNALSMLGDLELKNDDWVKAKETFRA 612 (1082)
Q Consensus 585 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 612 (1082)
+.++++.++..++.-..+|..--+.+.+
T Consensus 488 DfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 488 DFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred CCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999887766665443333333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=378.59 Aligned_cols=675 Identities=11% Similarity=-0.007 Sum_probs=526.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1082)
+...+..|..+...|++++|+..|+.++..+| +...++..|+.+|+.+|+.. +|+..+++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP---------~n~~~~~~LA~~yl~~g~~~-----------~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVP---------DNIPLTLYLAEAYRHFGHDD-----------RARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHH-----------HHHHHHHH
Confidence 34678888889999999999999999987754 33567899999999999888 99999999
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHh
Q 001414 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 120 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~ 191 (1082)
+++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+....++. .+.+..
T Consensus 104 Av~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 104 QLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 999999998888877666 999999999999999999999999999998 666655556665 333333
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHhHHHHHHHHHHHHHhCCCCHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1082)
+|.. ..+.+.++.+|..+|+++.|+..+.++++..|.+...+..|+.+|... ++ +.++.++...+ ..++.+
T Consensus 178 ~~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~l---k~d~~l 249 (987)
T PRK09782 178 SPEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGI---FTDPQS 249 (987)
T ss_pred CCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhc---ccCHHH
Confidence 3333 556777799999999999999999999999999999999999988873 43 66666655422 278899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
+..++..|...|+.+.|...+...-......|......+.+++..... ..|...|.+= ..++...+...+..
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~ 321 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHH
Confidence 999999999999999999999987766666666666677776654432 2233333331 22445556777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL 429 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al 429 (1082)
.+...+++..+..+ +...|.++. ...........+.+.++...+....+..|.+...+..++.+. ..|+..+|.
T Consensus 322 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 322 VLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 99999999955533 445666664 222222333558888899999988888899999999999988 999999999
Q ss_pred HHHHhhcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--chhhhhcccccchhhhhhhhhHHhhhhhh
Q 001414 430 DAFKTKAG----EEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGD--GIWLTLLDSKTKTYVIDASASMLQFKDMQ 500 (1082)
Q Consensus 430 ~~l~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1082)
..|..... ...+..+...++.+|...+. ...+..+...+-.. +.|..... ....
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------~~~~ 459 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP-----------------GIAD 459 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh-----------------hhhh
Confidence 99998322 22245566688999888877 33333332111000 00000000 0000
Q ss_pred hhhhhccCCCCcCCCCc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001414 501 LFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 578 (1082)
Q Consensus 501 ~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 578 (1082)
.+..+ ...+...|. .+.+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++|+..|++
T Consensus 460 ~~~~~---~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 460 NCPAI---VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hHHHH---HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00000 011224566 88999999999998 899999999999999999864 466778888899999999999999
Q ss_pred HHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHH
Q 001414 579 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 658 (1082)
Q Consensus 579 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 658 (1082)
++...|. ...+..+|.++...|++.+|..+|++++...|. ....+..++.. .... |++++|+..|
T Consensus 535 a~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~-l~~~------------Gr~~eAl~~~ 599 (987)
T PRK09782 535 ISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ-RYIP------------GQPELALNDL 599 (987)
T ss_pred HhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH-HHhC------------CCHHHHHHHH
Confidence 8777555 456788999999999999999999999998766 33344344433 3444 8999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 659 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 659 ~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
.+++..+|+ +.++.++|.++...|++++|+..|++++...| +++.++.++|.++...|++++|+..|+++++.
T Consensus 600 ~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l- 672 (987)
T PRK09782 600 TRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG- 672 (987)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999996 88999999999999999999999999999998 78999999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHH
Q 001414 739 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 818 (1082)
Q Consensus 739 ~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~ 818 (1082)
.|.++.+++++|.++...|++++|+..|++++.+.|++..+.+-++.+.+ +...++.|++
T Consensus 673 -~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~-------------------~~~~~~~a~~ 732 (987)
T PRK09782 673 -LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ-------------------QRFNFRRLHE 732 (987)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH-------------------HHHHHHHHHH
Confidence 68889999999999999999999999999999999999999887777544 3345677777
Q ss_pred HHHHHhh
Q 001414 819 VFSHLSA 825 (1082)
Q Consensus 819 ~f~~l~~ 825 (1082)
.+.+...
T Consensus 733 ~~~r~~~ 739 (987)
T PRK09782 733 EVGRRWT 739 (987)
T ss_pred HHHHHhh
Confidence 6666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=357.51 Aligned_cols=614 Identities=12% Similarity=0.016 Sum_probs=474.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1082)
|++.+|+..|+++++++|+++.+++.++.+|+..|++++|+..++++++.+|.|...+..++.+ +++.+|+..|++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHH
Confidence 4455999999999999999999999999999999999999999999999999999988888766 999999999999
Q ss_pred HHHhCCCChHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Q 001414 188 ALQVHPSCPGAIRLGIGLC--------RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1082)
Q Consensus 188 al~~~p~~~~~~~~~lg~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1082)
++..+|++ ..+++.++.. |.+.+....++. .+.+..+|........++.+|...++ ++.|+..+.+
T Consensus 134 l~~~~P~n-~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d---w~~Ai~lL~~ 207 (987)
T PRK09782 134 LLAQQKAC-DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ---WSQADTLYNE 207 (987)
T ss_pred HHHhCCCC-hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC---HHHHHHHHHH
Confidence 99999999 7888888887 666655555555 44444444455566667999999999 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 001414 260 AFEIYPYCAMALNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1082)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1082)
+.+..|.+...+..|+.+|.. .++ +.+..++...+ ..++.++..++..|...|+.++|...+...-......
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999999999999998888 466 66776654322 2567889999999999999999999998865544444
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
|....-++.++...... ..|...|.+ ...++.......+...+...+.+.-+.++ +...|.++.....++.
T Consensus 281 ~~~~~~~~~l~r~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 281 AQEKSWLYLLSKYSANP---VQALANYTV--QFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEMLEERYAV 351 (987)
T ss_pred CccHHHHHHHHhccCch---hhhccchhh--hhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchHHHHHHhh
Confidence 55555555555544332 334444444 44455566777778999999999955543 4567777753333322
Q ss_pred HHhcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhh
Q 001414 419 LLISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 497 (1082)
Q Consensus 419 ~~~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1082)
....+.+.++...+.. ....+.....+..++......|++.+|..+|+.++..... ... ... +..+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~-------l~~~ 418 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-----ARL-SQT-------LMAR 418 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-----ccc-CHH-------HHHH
Confidence 2255777777777776 4455889999999999999999999999999999873110 000 000 0000
Q ss_pred hhhhhhhhccCCCCcCCCCchHHHHHHHHH------HHHhcCChH---HHHHHHHHHHHhCCC--hHHHHHHHHHHHHHh
Q 001414 498 DMQLFHRFENDGNHVELPWNKVTVLFNLAR------LLEQIHDTV---AASVLYRLILFKYQD--YVDAYLRLAAIAKAR 566 (1082)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~------~~~~~g~~~---~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~ 566 (1082)
-..++..- ..+..+.-...++. -..-.|+.. .+...+..++...|. ++.+|+.+|.++..
T Consensus 419 l~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 419 LASLLESH--------PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred HHHHHHhC--------CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 00000000 00000111111100 011124443 344555666667777 89999999999987
Q ss_pred cCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchH
Q 001414 567 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 646 (1082)
Q Consensus 567 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~ 646 (1082)
+++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...+. ...++.+|.+ +...
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~a-ll~~---------- 555 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS--NEDLLAAANT-AQAA---------- 555 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHH-HHHC----------
Confidence 899999999999999999865 3556677778999999999999998776444 3446677887 7777
Q ss_pred HhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 647 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 726 (1082)
Q Consensus 647 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 726 (1082)
|++..|..+|.+++..+|.+...+..++..+...|++++|+..|++++...| + +.+++++|.++.++|++++
T Consensus 556 --Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~-~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 556 --GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S-ANAYVARATIYRQRHNVPA 627 (987)
T ss_pred --CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C-HHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999888777777777788999999999999999998 5 7899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 001414 727 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 793 (1082)
Q Consensus 727 Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~ 793 (1082)
|+..|++++.. .|.++.++..+|.++...|++++|+..|.+++.++|+++.+++|+|.++...+.
T Consensus 628 A~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 628 AVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998 688899999999999999999999999999999999999999999999887774
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=329.41 Aligned_cols=667 Identities=14% Similarity=0.068 Sum_probs=546.7
Q ss_pred hcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHH
Q 001414 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1082)
Q Consensus 35 ~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~ 114 (1082)
..+.+...+..+...|++.|++.+|..+++.+......+ ....+..+...+...+... .|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~-----------~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAVE-----------EGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCHH-----------HHH
Confidence 345567778889999999999999999999986542211 1123444555555555544 888
Q ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Q 001414 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH- 192 (1082)
Q Consensus 115 ~~~~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~- 192 (1082)
.++..+++..+. +......+...|.+.|+++.|...|+.+. +.+...|..+...|.+.|++++|+.+|.++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999988877653 33455666777889999999999999874 3467789999999999999999999999998654
Q ss_pred -CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 001414 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1082)
Q Consensus 193 -p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1082)
|+. .++..+...+...+++..+...+..++.... .+...+..|...|.+.|+ +..|...|..+. ..+..+
T Consensus 184 ~Pd~--~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s 255 (857)
T PLN03077 184 RPDV--YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCIS 255 (857)
T ss_pred CCCh--hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcch
Confidence 554 4566667777888999999999998887643 356678888899999999 999999998764 346688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
|+.+...|...|++.+|..+|..+.... ...+..++..+...+...|+.+.|.+++..+++. .......++..+..
T Consensus 256 ~n~li~~~~~~g~~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~ 331 (857)
T PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQ 331 (857)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHH
Confidence 9999999999999999999999998653 2345577888889999999999999999999874 23345678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHH
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGA 427 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~--p~~~~~~~~la~~~-~~~~~~~ 427 (1082)
.|.+.|++++|...|+.+.. .+..+|..+...|.+.|++++|+.+|.++.... |+.......+ ..+ ..|+++.
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll-~a~~~~g~~~~ 407 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL-SACACLGDLDV 407 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-HHHhccchHHH
Confidence 99999999999999998743 467789999999999999999999999987653 6654444444 455 9999999
Q ss_pred HHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhh
Q 001414 428 ALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 505 (1082)
Q Consensus 428 Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 505 (1082)
|..++.. ..+...+..+++.+...|.+.|++++|...|+++..
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------------------------------- 452 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------------------------------- 452 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------------------------------
Confidence 9999988 455667778999999999999999999999987533
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-C
Q 001414 506 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-G 584 (1082)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-p 584 (1082)
.+..+|..+...|...|++.+|+.+|.+++...+.+..++..+...+...|..+.+..++..+++.. .
T Consensus 453 -----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 453 -----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred -----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 2456788889999999999999999999987666667888888889999999999999999998865 3
Q ss_pred CChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 585 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
.+..+...+...|.+.|++++|...|..+ ..+..+|..|... |... |+.++|+.+|+++...
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMVES 583 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHHHc
Confidence 34557778899999999999999999876 3478889999888 8888 9999999999999876
Q ss_pred cCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 001414 665 HTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 743 (1082)
Q Consensus 665 ~p~-~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~ 743 (1082)
... |..+++.+...+.+.|.+++|..+|..+.+..+ .. -+...|..+..+|.+.|++++|.++++.+ +..++
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g--i~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd 656 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS--IT-PNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPD 656 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC--CC-CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC
Confidence 533 666777888889999999999999999996542 11 24678999999999999999999999886 34678
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHL 823 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l 823 (1082)
+.+|..|..++...|+.+.+....++++++.|+++..+..|+.+|...| .+++|.+++..+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-------------------~~~~a~~vr~~M 717 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG-------------------KWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-------------------ChHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998888876555 478888888888
Q ss_pred hhCCCC
Q 001414 824 SAASNL 829 (1082)
Q Consensus 824 ~~~~~~ 829 (1082)
...+-.
T Consensus 718 ~~~g~~ 723 (857)
T PLN03077 718 RENGLT 723 (857)
T ss_pred HHcCCC
Confidence 765543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=324.11 Aligned_cols=420 Identities=16% Similarity=0.109 Sum_probs=210.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+..|++++...|+ +..+..+|.+|+..|++++|+..|.+++..+|++..+++.+|.++...|+|++|+..|..++..
T Consensus 145 ~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 145 KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555553 4455555555555555555555555555555555555555555555555555555555554444
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
.+.........+...+ ...+...+..++...|.+...+..++.++.... ...+...+......+|.....+
T Consensus 224 ~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 224 DGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred CCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc----CCcchhhhhcccccccccccch
Confidence 3333111111010000 122333344444444544444444443321111 1111111222223333332222
Q ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHH
Q 001414 272 NYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1082)
Q Consensus 272 ~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1082)
..++..+. ..+.|++|+..|+.++......|....++..+|.++...|++++|+..|++++. ..|....+++.+
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~l 371 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKR 371 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHH
Confidence 22222211 123444444444444433322333344444444444444444444444444443 334444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~A 428 (1082)
|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|++++.++|++.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------------------ 433 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------------------ 433 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------------------
Confidence 44444444444444444444444444444444444444444444444444444444444433
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccC
Q 001414 429 LDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 508 (1082)
Q Consensus 429 l~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (1082)
..+.++|.++...|++++|+..|++++.
T Consensus 434 --------------~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------- 461 (615)
T TIGR00990 434 --------------FSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------- 461 (615)
T ss_pred --------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------
Confidence 3445556666666777777777776665
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHH------HHHHHHH-HHHhcCHHHHHHHHHHHHH
Q 001414 509 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAAI-AKARNNLQLSIELVNEALK 581 (1082)
Q Consensus 509 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a------~~~la~~-~~~~g~~~eA~~~~~~al~ 581 (1082)
..|.++.+++.+|.++...|++++|+..|.+++...|..... ++..+.+ +...|++++|+.++++++.
T Consensus 462 -----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 462 -----NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred -----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445566666777777777777777777777777766643221 1122222 2335677777777777777
Q ss_pred HcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 582 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
++|++..++..+|.++...|++++|+..|++++.+...
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 77777667777777777777777777777777665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=322.95 Aligned_cols=434 Identities=17% Similarity=0.177 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1082)
.+..+|..++..|+|.+|+..|.+++...|+ +..+.++|.||..+|++++|+..+.+++.++|++..+++.+|.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555553 23455555555555555555555555555555555555555555555
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1082)
Q Consensus 244 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1082)
.|+ +++|+..|..+...++.+......+...+.. ..+...+..++.. .+....++..++..+. ......
T Consensus 207 lg~---~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~-~~~~~~ 275 (615)
T TIGR00990 207 LGK---YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET---KPENLPSVTFVGNYLQ-SFRPKP 275 (615)
T ss_pred cCC---HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc---CCCCCCCHHHHHHHHH-HccCCc
Confidence 555 5555555555444443332211111111111 1112222222211 2222223333333221 111111
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001414 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQL---KLGDFRSALTNFEKVLEI---YPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
+...+..... ..+.....+..++..+. ..+.|++|+.+|++++.. .|....++..+|.++...|++++|+.
T Consensus 276 ~~~~~~~~~~---~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 276 RPAGLEDSNE---LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred chhhhhcccc---cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222221 22333334444444332 346788888888888875 36677788888899888999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh
Q 001414 398 LLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 477 (1082)
Q Consensus 398 ~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 477 (1082)
.|++++.++|.+..+ +..+|.++...|++++|+..|++++.
T Consensus 353 ~~~kal~l~P~~~~~--------------------------------~~~la~~~~~~g~~~eA~~~~~~al~------- 393 (615)
T TIGR00990 353 DLSKSIELDPRVTQS--------------------------------YIKRASMNLELGDPDKAEEDFDKALK------- 393 (615)
T ss_pred HHHHHHHcCCCcHHH--------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHH-------
Confidence 999998888876544 44456667778888888888888877
Q ss_pred cccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHH
Q 001414 478 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 557 (1082)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 557 (1082)
..|.++.+++.+|.++...|++++|+..|++++..+|++..+++
T Consensus 394 ------------------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 394 ------------------------------------LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred ------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 56777888889999999999999999999999999999989999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHH-----HHHHhHhHH
Q 001414 558 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGNWN 632 (1082)
Q Consensus 558 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~-----~~~~Lg~~~ 632 (1082)
.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.+.|..... .++..+...
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887653221 122222221
Q ss_pred HHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001414 633 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 633 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p 700 (1082)
|... |++++|+.+|++++.++|++..++..+|.++...|++++|+.+|+++++..+
T Consensus 518 ~~~~------------~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 518 FQWK------------QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHh------------hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 2223 8899999999999999999888888999999999999999999999988775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-29 Score=312.54 Aligned_cols=640 Identities=14% Similarity=0.054 Sum_probs=529.9
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhh
Q 001414 26 ASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQ 103 (1082)
Q Consensus 26 ~~~l~~~l~~e--~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~ 103 (1082)
+..+...+... +.+...|..+..++..++.+..+..++..++...+. ..+.+.+.|...|.+.|+..
T Consensus 70 A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~n~li~~~~~~g~~~--- 138 (857)
T PLN03077 70 ALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS--------LGVRLGNAMLSMFVRFGELV--- 138 (857)
T ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC--------CCchHHHHHHHHHHhCCChH---
Confidence 33344434332 345567888888899999999999999987654322 12346778888899999887
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Q 001414 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDSL 182 (1082)
Q Consensus 104 ~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~Al 182 (1082)
.|...|.++. +.+..+|..+...|.+.|++++|+.+|.++.... ..+...+..+...+...+++..+.
T Consensus 139 --------~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 139 --------HAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred --------HHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 8999999875 3477899999999999999999999999998643 234555666666777889999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH
Q 001414 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1082)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1082)
.++..+++........++..+..+|.+.|+++.|...|.++.. .+...|..+...|...|+ +.+|+..|.++..
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~~ 281 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHHH
Confidence 9999988876444356788899999999999999999998753 356779999999999999 9999999999987
Q ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC
Q 001414 263 IY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1082)
Q Consensus 263 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1082)
.. ..+..++..+...+...|+.+.+.+++..+.... ...+..++..+...|.+.|++++|..+|..+.. ..
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d 353 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------KD 353 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------CC
Confidence 63 3356778888889999999999999999988754 344578899999999999999999999998742 24
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGE 418 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p-~~~~~~~~la~ 418 (1082)
...|..+...|.+.|++++|+..|..+.... |+ ..++..+...+...|+++.|..++..+.+... .+..++..|..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 5679999999999999999999999987654 44 45666667789999999999999999988753 45677888888
Q ss_pred HH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhh
Q 001414 419 LL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 497 (1082)
Q Consensus 419 ~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1082)
.| ..|++++|..+|..... .+...|+.+...|...|++.+|+.+|.+++..
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-------------------------- 484 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-------------------------- 484 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--------------------------
Confidence 88 99999999999998543 34568899999999999999999999998751
Q ss_pred hhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCHHHHHHHH
Q 001414 498 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELV 576 (1082)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~g~~~eA~~~~ 576 (1082)
..| +..++..+..++...|..+.+..++..+++... .+...+..+..+|.+.|++++|...|
T Consensus 485 ----------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 485 ----------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred ----------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 234 445566667778889999999999999987542 34566778889999999999999999
Q ss_pred HHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHH
Q 001414 577 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 656 (1082)
Q Consensus 577 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 656 (1082)
+.+ +.+..+|..+...|.+.|+.++|+..|+++......+|..++..+... |... |.+++|..
T Consensus 548 ~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~v~ea~~ 610 (857)
T PLN03077 548 NSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------GMVTQGLE 610 (857)
T ss_pred Hhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------ChHHHHHH
Confidence 886 567889999999999999999999999999987766788888877777 7777 99999999
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 657 LYTRVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 734 (1082)
Q Consensus 657 ~~~~~l~~~p--~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 734 (1082)
+|+.+....+ .+...+..+..+|.+.|++++|..+++++. ..| ++.+|..|-..+...|+.+.|....+++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p------d~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP------DPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999985543 366788999999999999999999999873 333 5788999988999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 735 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 735 l~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
++. .|.++..+..|+.+|...|+|++|.++.+.+.+.
T Consensus 684 ~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 684 FEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred Hhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 987 6888999999999999999999999999877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-28 Score=276.50 Aligned_cols=653 Identities=16% Similarity=0.119 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001414 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1082)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1082)
-+...|......|+.+ +|+.++..+++++|.++.+|+.+|.+|-++|+.++++..+-.+-.++|++...
T Consensus 141 ~ll~eAN~lfarg~~e-----------eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLE-----------EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHhCCHH-----------HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 3444455555555555 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHH-HHHHH
Q 001414 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEAL-VALAV 239 (1082)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~-~~la~ 239 (1082)
|..++....++|++..|.-+|.++++.+|.+ ....+..+.+|.++|++..|...|.+++..+|.. .... ...+.
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 6778889999999999999999999999999921 1112 22345
Q ss_pred HHHHhccHHhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------
Q 001414 240 MDLQANEAAGIRKGMEKMQRAFEI--YPYCAMALNYLANHFFFTGQHFLVEQLTETALA--------------------- 296 (1082)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--------------------- 296 (1082)
.+...++ -+.|++.+..++.. +-.....++.++.++.....++.+.........
T Consensus 289 ~~~~~~~---~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 289 YFITHNE---RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHhhH---HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 5555555 58888888888883 333456778899999999999998887776654
Q ss_pred -ccC---CCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 297 -VTN---HGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 297 -~~~---~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
... ..+.... +...++.+....++..+++..+..--. -...+.+..++.++.++...|++..|+.+|..+...
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 100 0111122 255555555666666666655543321 124556778999999999999999999999999886
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhc----------CCC
Q 001414 372 YPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKA----------GEE 439 (1082)
Q Consensus 372 ~p~-~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~----------~~~ 439 (1082)
.+. +..+|+.+|.||..+|.++.|+.+|.+++...|++.++.+.|+.++ ..|+.++|++.+.... ...
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 554 5679999999999999999999999999999999999999999999 9999999999999822 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc---chhhhhh-----------hhhHHhh---hhhhhh
Q 001414 440 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT---KTYVIDA-----------SASMLQF---KDMQLF 502 (1082)
Q Consensus 440 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~-----------~~~~~~~---~~~~~~ 502 (1082)
....+......+++..|+.++=+.....++........+.... ....... ....... .+...-
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 3456778888999999999886655555544322111110000 0000000 0000000 000000
Q ss_pred hhhccC--CCCcCCCCchH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC----h-H-HHHHHHHHHHHHhcCHH
Q 001414 503 HRFEND--GNHVELPWNKV----TVLFNLARLLEQIHDTVAASVLYRLILFKYQD----Y-V-DAYLRLAAIAKARNNLQ 570 (1082)
Q Consensus 503 ~~l~~~--~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~-~-~a~~~la~~~~~~g~~~ 570 (1082)
..+... ........... .....+..++.+.+.+.+|..+...++...-- . . ...+....+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 000000 00000111112 33445566778888888888888887764321 1 1 22233334566778888
Q ss_pred HHHHHHHHHHHH-----cCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCch
Q 001414 571 LSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 645 (1082)
Q Consensus 571 eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~ 645 (1082)
.|..+++.++.. +|..+..|...-.+....++-.--...+..++...+..++...+.-|.. .+..
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~-~~~~--------- 753 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN-LFVN--------- 753 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh-Hhhc---------
Confidence 898888888887 5555556664444444555444444445555555555445555555665 5666
Q ss_pred HHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC----------CchHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001414 646 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715 (1082)
Q Consensus 646 ~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 715 (1082)
+.+..|+..|.++...+|++|..-..+|.++.+.. ..-+++.++.+..+..... +...+.+|+|
T Consensus 754 ---~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNig 827 (895)
T KOG2076|consen 754 ---ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIG 827 (895)
T ss_pred ---cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHH
Confidence 78888999999999999998888888887776541 3346666666666655311 3567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCC--------CC--HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 001414 716 HVYFAQGNFALAMKMYQNCLRKFYYN--------TD--AQILLYLARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 716 ~~~~~~g~~~~Ai~~~~~al~~~~~~--------~~--~~~~~~La~~~~~~g~~~eA~~~l~~a 770 (1082)
.+|...|-..-|+.+|+++|...+.+ -+ -.+.++|..+|...|+...|.+++.+-
T Consensus 828 Rayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 828 RAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 88888888888888888888763111 11 566778888888888888888877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-27 Score=252.39 Aligned_cols=597 Identities=16% Similarity=0.134 Sum_probs=496.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
-++..+|.-++....+.||.+|..|+.-|.+--..|++..|..+..+-.+..|.+...|+.-+ +....+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 467789999999999999999999999999999999999999999998888888888877644 3344444555555
Q ss_pred HHHHhCCCChHHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001414 187 RALQVHPSCPGAIRLGI---------------------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~l---------------------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1082)
.++...|.+ ..+|+.- =.....+.+.+.|+-.+.++++..|.+.+.|..|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 555555555 3333222 223344566777888889999988988888888776
Q ss_pred HHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHH
Q 001414 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 317 (1082)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~ 317 (1082)
+. .|..|...++++-+.-|.++.+|..-+.+--..|+.+.+.+++.+.+..... ...+-+.|+.-|..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 53 2888899999999999999999999999999999999999999888754322 23455778888888888
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001414 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
.|-.-.+.......+...-...+.-..|+.-++.+.+.+.++-|+.+|..+++.+|....+|...+..-...|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 88888777777777764445566677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001414 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 475 (1082)
Q Consensus 398 ~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 475 (1082)
+|++++...|.....|+..+..+ ..|+...|..++.. ....+.+.++|.....+.+....++.|..+|.++...+
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s--- 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--- 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC---
Confidence 99999999999999999999988 88999999999998 55666788899988899999999999999999987632
Q ss_pred hhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHH
Q 001414 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 555 (1082)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 555 (1082)
....+|+.-+.+...+++.++|+.+++.+++.+|.+...
T Consensus 649 -----------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl 687 (913)
T KOG0495|consen 649 -----------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL 687 (913)
T ss_pred -----------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH
Confidence 256788888888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHH
Q 001414 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 635 (1082)
Q Consensus 556 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~ 635 (1082)
|+.+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|....|...|.++.-.+|+ +...|+....+ -+.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~-ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRM-ELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999988888 55555444444 333
Q ss_pred HhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001414 636 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715 (1082)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 715 (1082)
. |+.+.|..+..++|+..|++...|..-..+.-.-++-..+++.+++. . .+|.+++..|
T Consensus 766 ~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphVllaia 824 (913)
T KOG0495|consen 766 A------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHVLLAIA 824 (913)
T ss_pred c------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchhHHHHH
Confidence 3 99999999999999999998887766555555556655555555443 2 5789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHH
Q 001414 716 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 784 (1082)
Q Consensus 716 ~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nl 784 (1082)
..+....++++|.+.|.++++. .|.+..++.++-..+...|.-++-.++|.+.....|.+...|-.+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 9999999999999999999998 466677777777888899999999999999999999887665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-27 Score=263.13 Aligned_cols=628 Identities=18% Similarity=0.200 Sum_probs=450.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1082)
+.-.+..|+..+-+|++++|..++..++..++ .....+.+||.+|-.+|+.+ +++...-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp---------~~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP---------RNPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---------cchhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 56788999999999999999999999987754 23567999999999999888 89999999
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 001414 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---- 195 (1082)
Q Consensus 120 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---- 195 (1082)
|..++|++...|..++....++|++.+|+-+|.++++.+|.+....+.++.+|.+.|++..|...|.+++...|..
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH-----------
Q 001414 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAFE----------- 262 (1082)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~----------- 262 (1082)
..+.-...+..+...++-+.|+..++.++....+ ..+-+..++.+++.... ++.++........
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 1223345678888888889999999999983322 33446677777777766 7777766655444
Q ss_pred -----------hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001414 263 -----------IY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1082)
Q Consensus 263 -----------~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1082)
.. +.+..+ ..+..++......+....+..............+..++.++.++...|+|..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 10 112222 233334444444333333333333332234566788999999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.+|..++... ...+...|+.+|.||..+|.++.|+.+|++++...|++.++...|+.+|.++|++++|.+.+.....-
T Consensus 435 ~~l~~i~~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 9999998632 23346689999999999999999999999999999999999999999999999999999999887633
Q ss_pred CCCC---------HHHHHHHHHHH-hcCCHHHHHHHHHh------------------------hcCCCC-----------
Q 001414 406 DPRD---------AQAFIDLGELL-ISSDTGAALDAFKT------------------------KAGEEV----------- 440 (1082)
Q Consensus 406 ~p~~---------~~~~~~la~~~-~~~~~~~Al~~l~~------------------------~~~~~~----------- 440 (1082)
++.+ .........++ ..|+.++=+..... ......
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHH
Confidence 3221 12223333344 45554432221111 000000
Q ss_pred ----------------------------C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001414 441 ----------------------------P----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488 (1082)
Q Consensus 441 ----------------------------~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 488 (1082)
. .+++..+..++.+.+.+++|..+...++....
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~--------------- 657 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI--------------- 657 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh---------------
Confidence 1 12233334455566666666666666554211
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchH-HHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CCChHHHHHHHHHH
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLRLAAI 562 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~a~~~la~~ 562 (1082)
++ ..+... ..-+....+-...+++..|..+++.++.. +|.....|+..-.+
T Consensus 658 ------------f~-----------~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 658 ------------FF-----------QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred ------------hh-----------ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 00 112222 33334444556779999999999999987 66556666544444
Q ss_pred HHHhcCHHHHHHHHHHHHHHcCCC-hHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhc
Q 001414 563 AKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641 (1082)
Q Consensus 563 ~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~ 641 (1082)
....++-.--..++..++..+|.+ +......|..++..+.+..|+..|-++....|. ++...+.||-. |...+....
T Consensus 715 ~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lgla-fih~a~qr~ 792 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLA-FIHLALQRR 792 (895)
T ss_pred HHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHH-HHHHHHHHH
Confidence 455555444555666677777777 667778899999999999999999999999888 55555556655 554422111
Q ss_pred cCchHHhhHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchHHHH
Q 001414 642 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWI 712 (1082)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~ 712 (1082)
...+.-..-+++.++.+..++-.. .-.+.+++|.+|-..|-..-|+.+|+++++..|.+... -.-.+-+
T Consensus 793 --v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~ 870 (895)
T KOG2076|consen 793 --VSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY 870 (895)
T ss_pred --HhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh
Confidence 111113355667777666655443 77899999999999999999999999999987532110 1234778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 001414 713 NLAHVYFAQGNFALAMKMYQNCL 735 (1082)
Q Consensus 713 ~la~~~~~~g~~~~Ai~~~~~al 735 (1082)
||..+|...|+...|.+++.+-+
T Consensus 871 NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 871 NLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hhhhhhccCCcHHHHHHHHHhhc
Confidence 99999999999999999887643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-25 Score=236.53 Aligned_cols=606 Identities=13% Similarity=0.095 Sum_probs=511.9
Q ss_pred HhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHH
Q 001414 34 KAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1082)
Q Consensus 34 ~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A 113 (1082)
...|.++..|+.-|+.--..|++..|..++.++.+.++.+ -.+|+..-++. -.+.|
T Consensus 279 etnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS----------------eDvWLeaiRLh--------p~d~a 334 (913)
T KOG0495|consen 279 ETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS----------------EDVWLEAIRLH--------PPDVA 334 (913)
T ss_pred hcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch----------------HHHHHHHHhcC--------ChHHH
Confidence 4588899999999999999999999999999998876543 22333333332 11257
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
..+.-++++..|.++..|+..+.+-.. ...=...++++++..|+++..|-. .....+.+.|..++.++.+..|
T Consensus 335 K~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAveccp 407 (913)
T KOG0495|consen 335 KTVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECCP 407 (913)
T ss_pred HHHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhcc
Confidence 788889999999999999987776543 344467899999999999877653 3466777789999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh---C--CCCH
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI---Y--PYCA 268 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~---~--p~~~ 268 (1082)
.+ ...|.. |.++.-|+.|...+.++-+.-|.++.+|+.-+.+-...|+ .+....++.+.+.. + .-+.
T Consensus 408 ~s-~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~r 479 (913)
T KOG0495|consen 408 QS-MDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEINR 479 (913)
T ss_pred ch-HHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeecH
Confidence 98 565554 4556779999999999999999999999999999999998 55555555555432 2 2355
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHH
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1082)
..|..-|...-..|..-.+..+....+..+-.....-..|..-+..+...+-++-|+..|..+++ -.|.....|...
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq---vfp~k~slWlra 556 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ---VFPCKKSLWLRA 556 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh---hccchhHHHHHH
Confidence 67777888888888888888888888877666667778899999999999999999999999998 456666778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1082)
+.+--.-|..+.-...|++++...|.....|.+.+..+...|+...|..++..+++.+|++...|+.-..+. ....++.
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 888888999999999999999999999999999999999999999999999999999999999999988888 8999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhcc
Q 001414 428 ALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 507 (1082)
Q Consensus 428 Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 507 (1082)
|..+|.+.........+|...+.+...+++.++|+.+++++++
T Consensus 637 aR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk------------------------------------- 679 (913)
T KOG0495|consen 637 ARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK------------------------------------- 679 (913)
T ss_pred HHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH-------------------------------------
Confidence 9999999777888889999999999999999999999999998
Q ss_pred CCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCh
Q 001414 508 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587 (1082)
Q Consensus 508 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 587 (1082)
..|.....|..+|.++.++++.+.|...|...++..|..+..|+.|+.+-...|++-.|...+.++.-.+|.+.
T Consensus 680 ------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 680 ------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred ------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCC
Q 001414 588 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 667 (1082)
Q Consensus 588 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 667 (1082)
..|.....+-++.|+.+.|...+.++++..|+ ....| ...| ++.. +. ++ ...+..+|+..-.
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LW--aEaI-~le~-~~---------~r----kTks~DALkkce~ 815 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLW--AEAI-WLEP-RP---------QR----KTKSIDALKKCEH 815 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhH--HHHH-Hhcc-Cc---------cc----chHHHHHHHhccC
Confidence 99999999999999999999999999999887 22222 1222 2222 11 11 2234456666778
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001414 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 747 (1082)
Q Consensus 668 ~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~ 747 (1082)
|+.++..+|.++....++++|...|.+++..+| ++.++|..+-..++..|.-++-.+.|.+|... .|.....|
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W 888 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELW 888 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHH
Confidence 899999999999999999999999999999998 78899999999999999999999999999886 55554444
Q ss_pred HH
Q 001414 748 LY 749 (1082)
Q Consensus 748 ~~ 749 (1082)
..
T Consensus 889 ~a 890 (913)
T KOG0495|consen 889 QA 890 (913)
T ss_pred HH
Confidence 43
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-26 Score=284.49 Aligned_cols=442 Identities=13% Similarity=0.057 Sum_probs=313.6
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
+.++.+ -...|-++....-...++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555 4456667777777778888889999999999888888888888889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1082)
.+ +.++..++.++...|++++|+..+++++...|++.. +..+|.++...|+ +.+|+..+++++...|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 88 677888899999999999999999999999999888 8888998888888 889999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHhhCCCCCChh-
Q 001414 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFIF- 343 (1082)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~~~- 343 (1082)
++.++...+..+.|+..+..+...... ..........+.+.... .+++ ++|+..|+.++...+..|....
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 888888888888888888765531000 00001122222333322 2334 7788888888865444443322
Q ss_pred ---hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001414 344 ---PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1082)
Q Consensus 344 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~ 419 (1082)
+.+.....++..|++++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|++++..+|.++.
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~-------- 307 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD-------- 307 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC--------
Confidence 222212344677899999999999888764322 34444688999999999999999998887775421
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhh
Q 001414 420 LISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 499 (1082)
Q Consensus 420 ~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1082)
........++.++...|++++|+..+..+....|..........
T Consensus 308 --------------------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~---------------- 351 (765)
T PRK10049 308 --------------------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT---------------- 351 (765)
T ss_pred --------------------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----------------
Confidence 01122334444556666666666666666655432111111000
Q ss_pred hhhhhhccCCCCcCCCCc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 500 QLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
..|+ ...++..++.++...|++++|+..+++++...|.+..+++.+|.++...|++++|+..++
T Consensus 352 --------------~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 352 --------------SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1222 245666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 578 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
+++.++|+++.+++.+|.++...|++++|...+++++...|.
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777777777777777777777777776665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=274.95 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=197.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1082)
.+.......+..++..|++++|+..+..++...|.++.++..+|.+....|+++.|+..|++++..+|++ +.++..+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHH
Confidence 4455667778889999999999999999999999999999999999999999999999999999999999 788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001414 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1082)
++...|++++|+..|++++.++|+++.++..++.++...|+ +++|+..+.+++...|.++.++..++ .++..|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHH
Confidence 99999999999999999999999999999999999999999 99999999999999998887665543 355666666
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH----H
Q 001414 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS----A 361 (1082)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A 361 (1082)
+|+..+..++...+ +........++.++...|++++|+..|.+++. ..|....+++.+|.++...|++++ |
T Consensus 195 eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 195 EDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 66666665554321 11112223344555555555555555555554 334445555555555555555543 4
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|++
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 555555555555555555555555555555555555555555555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-26 Score=273.61 Aligned_cols=339 Identities=11% Similarity=0.003 Sum_probs=259.8
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001414 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1082)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1082)
........+..++..|++.+|+..+...+. ..|....+++.+|.++...|+++.|+..|++++..+|+++.++..+|
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 334455666777777888888888877776 56667777777777777888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001414 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESA 461 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A 461 (1082)
.++...|++++|+..|++++.++|+++.++..++.++ ..|++++|+..+.+ ....+.++..+..++ .+...|++++|
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHH
Confidence 8888888888888888888888888887777777777 77777777777766 233444555555443 46778888888
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001414 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541 (1082)
Q Consensus 462 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 541 (1082)
+..++.++... .+........++.++...|++++|+..
T Consensus 197 ~~~~~~~l~~~------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 197 HDLARALLPFF------------------------------------------ALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred HHHHHHHHhcC------------------------------------------CCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 88888776621 112223445567777888888888888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcC
Q 001414 542 YRLILFKYQDYVDAYLRLAAIAKARNNLQL----SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 542 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
|.+++..+|+++.++..+|.++...|++++ |+..|++++.++|+++.++..+|.++...|++++|+..+++++...
T Consensus 235 ~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 235 GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888875 7888888888888888888888888888888888888888888877
Q ss_pred CCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 001414 618 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697 (1082)
Q Consensus 618 ~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~ 697 (1082)
|. +..++..+|.+ |... |++++|+..|.+++..+|.+..+...+|.++...|++++|+..|++++.
T Consensus 315 P~-~~~a~~~La~~-l~~~------------G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 315 PD-LPYVRAMYARA-LRQV------------GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 76 66677778877 7777 8888888888888888888777666778888888888888888888888
Q ss_pred HhcCC
Q 001414 698 AASGS 702 (1082)
Q Consensus 698 ~~p~~ 702 (1082)
..|+.
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 87743
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-26 Score=277.96 Aligned_cols=432 Identities=13% Similarity=0.056 Sum_probs=309.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1082)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1082)
.+++. -...|-++........+....|++.+|+.++..+.. ..|..+.++..+|.++...|++.+|+..|++++.
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~---~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~- 77 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRV---HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS- 77 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 34444 445666777777777788888888888888877764 2355567788888888888888889888888887
Q ss_pred hCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
..|....++..++.++...|++++|+..+++++...|+++. +..+|.++...|++++|+..|++++...|+++.++.
T Consensus 78 --~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 78 --LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 56777778888888888899999999999999888888888 888898988899999999999999999888888777
Q ss_pred HHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001414 415 DLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 493 (1082)
Q Consensus 415 ~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1082)
.++.++ ..+..+.|+..+.+....+.. ...+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~-----------------~~~l~~----------------------------- 188 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAE-----------------KRDLEA----------------------------- 188 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHH-----------------HHHHHH-----------------------------
Confidence 777666 556666666666542221110 000000
Q ss_pred HhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCChH-------HHHHHHHHHH
Q 001414 494 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT---VAASVLYRLILFKYQDYV-------DAYLRLAAIA 563 (1082)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~-------~a~~~la~~~ 563 (1082)
.+....+...++......+++ +.|+..|+.++...|.++ .+++....++
T Consensus 189 ---------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 189 ---------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred ---------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 000000000011111111223 566777777765433221 1222212233
Q ss_pred HHhcCHHHHHHHHHHHHHHcCCChH-HHHHhhhhhhcccchHHHHHHHHHhhhcCCCC---cHHHHHHhHhHHHHHHhhh
Q 001414 564 KARNNLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDGK---DSYATLSLGNWNYFAALRN 639 (1082)
Q Consensus 564 ~~~g~~~eA~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---d~~~~~~Lg~~~y~~~~~~ 639 (1082)
...|++++|+..|++++...|..|. +...+|.+|...|++++|+..|++++...|.. .......|+.+ +...
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a-~~~~--- 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS-LLES--- 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH-HHhc---
Confidence 5667777777777777776543332 33445777777777777777777777655432 12233344444 4455
Q ss_pred hccCchHHhhHHHHHHHHHHHHHhhcC-------------CC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 001414 640 EKRAPKLEATHLEKAKELYTRVIVQHT-------------SN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 704 (1082)
Q Consensus 640 ~~~~~~~~~~~~~~A~~~~~~~l~~~p-------------~~--~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 704 (1082)
+++++|+..+.++....| ++ ..+...+|.++...|++++|+..|++++...|
T Consensus 324 ---------g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P---- 390 (765)
T PRK10049 324 ---------ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP---- 390 (765)
T ss_pred ---------ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 777888888877777765 32 34667889999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchh
Q 001414 705 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 705 ~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 781 (1082)
.++.+++.+|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++++|...+++++...|+++.+.
T Consensus 391 -~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 391 -GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 77999999999999999999999999999998 588899999999999999999999999999999999998543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-25 Score=233.31 Aligned_cols=422 Identities=14% Similarity=0.130 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1082)
..+-..|.-++..|+|++||.+|..++. ..|+.+.-|.+++-||...|+|++.++...++++++|+...+++..+.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 4566788899999999999999999998 5566566788999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHH-----------
Q 001414 386 YVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKT--KAGEEVPIEVLNNIGVI----------- 451 (1082)
Q Consensus 386 ~~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la~~~~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~----------- 451 (1082)
+..+|++.+|+....-.--.. -.+......+-+++...-...+-+-+.. ....|....+-...+.+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999999987665332221 1222222222223311111122222221 00011111111111111
Q ss_pred -------------HHHc---CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCC
Q 001414 452 -------------HFEK---GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 515 (1082)
Q Consensus 452 -------------~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (1082)
+... ..|..|...+.+.... .+..+......-+.
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~-----------------------------~~~~~~~n~~d~~l- 322 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG-----------------------------SESSLSVNEIDAEL- 322 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh-----------------------------hhhhccccccchhH-
Confidence 0111 1344444444333221 01111100000001
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 595 (1082)
...+.++...|..+.-.|++-.|...+..+|.++|.+...|+.++.+|...++..+-...|.++..++|.++++|+..|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 12366777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 596 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 596 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
+++-++++++|+.-|++++.+.|. ..++++.++-+ .+.. +.+..+...|+.+.+..|+.+..++..
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a-~Yr~------------~k~~~~m~~Fee~kkkFP~~~Evy~~f 468 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCA-LYRQ------------HKIAESMKTFEEAKKKFPNCPEVYNLF 468 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 999999999999999999999998 89999999988 6777 899999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYF-AQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 753 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~la~~~~-~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~ 753 (1082)
|.++..+++|+.|++.|.+++++.|... ..-++..+++-|.+.+ -.+++..|++++.++++. +|..-.++..||.+
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQF 546 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHH
Confidence 9999999999999999999999998410 0014555555554443 358999999999999998 68888899999999
Q ss_pred HHHhccHHHHHHHHHHHHhhCCC
Q 001414 754 HYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 754 ~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
..++|+.++|+++|+++..+.-.
T Consensus 547 ~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999877643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=251.04 Aligned_cols=518 Identities=13% Similarity=0.049 Sum_probs=337.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1082)
..+.+.|++.+|+.+|+.+...+.-. ....+..+..++...|....|...|..+.. | +...|..+...+...|+
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~-- 452 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQD-- 452 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcC--
Confidence 34445566666666665555443211 112222334444555556666655554432 3 34445555555555555
Q ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001414 249 GIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
++.|..+|..+.+.. +.+..++..+...|...|+++.|..+|..+.... ...+..+|..+...|.+.|++++|+.+
T Consensus 453 -~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 453 -IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 556666666555543 2345556666666666666666666666665432 122345666666666666666666666
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
|..+... ....+...|..+...|.+.|++++|...|..+... .| +..++..+..+|.+.|++++|..+|+.+.
T Consensus 530 f~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 530 YGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666542 11223445666666666666666666666666542 22 34556666666666666666666666666
Q ss_pred HhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001414 404 KID-PRDAQAFIDLGELL-ISSDTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479 (1082)
Q Consensus 404 ~~~-p~~~~~~~~la~~~-~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 479 (1082)
+.. +.+...|..+...| ..|++++|+.+|.. ..+..++...++.+...+.+.|++++|..+|..+...+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------- 679 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG------- 679 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------
Confidence 554 33455566666655 66666666666666 23344556788888999999999999999999988743
Q ss_pred cccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCChHHHHH
Q 001414 480 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYL 557 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~a~~ 557 (1082)
. +.+..++..+...|.+.|++++|..+|..+... .| +..+|.
T Consensus 680 ----------------------------------~-~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN 723 (1060)
T PLN03218 680 ----------------------------------I-KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMN 723 (1060)
T ss_pred ----------------------------------C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 2 235678899999999999999999999998763 34 478899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHH
Q 001414 558 RLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 636 (1082)
Q Consensus 558 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~ 636 (1082)
.+...|++.|++++|+.+|..+.... ..+..+|..+...+.+.|+++.|..+|..+++....++...+..|..+ + .
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl-c--~ 800 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-C--L 800 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--H
Confidence 99999999999999999999987653 234667777888999999999999999999998777777777666433 2 1
Q ss_pred hhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001414 637 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 716 (1082)
Q Consensus 637 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~ 716 (1082)
+.+.+|......++..++.++. ...+....|+.+|+++++..- .| +..++..+-.
T Consensus 801 ------------~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~~Al~lf~eM~~~Gi---~P-d~~T~~~vL~ 855 (1060)
T PLN03218 801 ------------RRFEKACALGEPVVSFDSGRPQ---------IENKWTSWALMVYRETISAGT---LP-TMEVLSQVLG 855 (1060)
T ss_pred ------------HHHHHHhhhhhhhhhhhccccc---------cccchHHHHHHHHHHHHHCCC---CC-CHHHHHHHHH
Confidence 4467777766665554433222 222345679999999998761 12 3556666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhh
Q 001414 717 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKKSLLRAIHL 773 (1082)
Q Consensus 717 ~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~-~~eA~~~l~~al~~ 773 (1082)
|++..+....+..+++.+... +..++..++..|-..+ |+ ..+|...|..+...
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred HhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHc
Confidence 888888888887777664432 3555666777776665 33 36899999999886
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=228.55 Aligned_cols=237 Identities=16% Similarity=0.165 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 001414 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK 455 (1082)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~ 455 (1082)
..++...|..++-.|+.-.|...|.+++.++|.+... |..++.+|...
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l--------------------------------yI~~a~~y~d~ 373 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL--------------------------------YIKRAAAYADE 373 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH--------------------------------HHHHHHHHhhh
Confidence 4566667777777777777777777777777765533 33345556666
Q ss_pred CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh
Q 001414 456 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535 (1082)
Q Consensus 456 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 535 (1082)
.+..+-...|.++.. ++|.++.+|+..|.++.-++++
T Consensus 374 ~~~~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hccHHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHHH
Confidence 666777777777766 6677778888888888888888
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001414 536 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615 (1082)
Q Consensus 536 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 615 (1082)
++|+.-|++++.++|+++-++..++++..+++.+.++...|+.+....|+.++++...+.++..+++++.|.+.|..++.
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred cCCCC-----cHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Q 001414 616 ATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 690 (1082)
Q Consensus 616 ~~~~~-----d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~ 690 (1082)
+.|.. .+..++.-+-+ .++- ++++..|+.++.++++++|.+-.++.+||.+..++|++++|++
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l-~~qw-----------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALL-VLQW-----------KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred hccccccccccchhhhhhhHh-hhch-----------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 76651 12223222322 1111 1889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001414 691 LFTQVQEAA 699 (1082)
Q Consensus 691 ~~~~~~~~~ 699 (1082)
+|++.....
T Consensus 559 lFEksa~lA 567 (606)
T KOG0547|consen 559 LFEKSAQLA 567 (606)
T ss_pred HHHHHHHHH
Confidence 999988766
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-22 Score=245.93 Aligned_cols=549 Identities=10% Similarity=0.016 Sum_probs=414.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHhHHHHHHH
Q 001414 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEK 256 (1082)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1082)
..++.+++..+...++. ..+..+-..+.+.|++..|+..|+.+...+.- +...+..+...+...|. ...|+.+
T Consensus 354 ~~~~~~~~~~~~~~~~~--~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~---~~eAl~l 428 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKS--PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA---VKEAFRF 428 (1060)
T ss_pred hhhHHHhccccCCCCCc--hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 34455555555544444 34555566677899999999999999876532 33334445566667777 8899988
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 001414 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1082)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1082)
+..... .+..++..+...+...|+++.|..++..+.... ...+..+|..+...|.+.|+++.|..+|..+...
T Consensus 429 f~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G--l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-- 501 (1060)
T PLN03218 429 AKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG--LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-- 501 (1060)
T ss_pred HHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--
Confidence 876654 467889999999999999999999999988653 2345678999999999999999999999999863
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH
Q 001414 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----DPRDAQ 411 (1082)
Q Consensus 337 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~----~p~~~~ 411 (1082)
....+...|..+...|.+.|++++|+..|..+.... ..+..+|..+...|.+.|++++|..+|..+... .| +..
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 223457789999999999999999999999997653 235788999999999999999999999999763 44 456
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001414 412 AFIDLGELL-ISSDTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488 (1082)
Q Consensus 412 ~~~~la~~~-~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 488 (1082)
+|..+...| ..|++++|..+|.. ..+...+...|+.+...|.+.|++++|+.+|.++...+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---------------- 644 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---------------- 644 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------
Confidence 777777777 99999999999998 44556677889999999999999999999999987743
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhc
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARN 567 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g 567 (1082)
..| +..++..+...+...|++++|..++..+.+.. +.+..+|..+...|.+.|
T Consensus 645 -------------------------v~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 645 -------------------------VKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred -------------------------CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 334 45678888899999999999999999998764 345788999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchH
Q 001414 568 NLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 646 (1082)
Q Consensus 568 ~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~ 646 (1082)
++++|..+|+.+.... ..+...|..+...|.+.|++++|..+|..+....-.++..++..+... |...
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a-~~k~---------- 767 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERK---------- 767 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHC----------
Confidence 9999999999987642 234678999999999999999999999999887766788888888877 8777
Q ss_pred HhhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 647 EATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 725 (1082)
Q Consensus 647 ~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 725 (1082)
|+++.|..+|..+++.... +...++.+..++. +.+++|..+...++...+ +......+...
T Consensus 768 --G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~--------------g~~~~~n~w~~ 829 (1060)
T PLN03218 768 --DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS--------------GRPQIENKWTS 829 (1060)
T ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc--------------cccccccchHH
Confidence 9999999999999887643 5556655533322 345666655554443332 22222233456
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc-hhhHHHHHHHHHHHhhhhccCCCHH
Q 001414 726 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT-LRFDAGVAMQKFSASTLQKTRRTAD 804 (1082)
Q Consensus 726 ~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~nla~~~~~~~~~~l~~~~~~~~ 804 (1082)
.|+.+|+++++. +..++..++..+-.++...+....+...+... ...|..+. ..|| .++ ...+
T Consensus 830 ~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m-~~~~~~~~~~~y~-~Li-~g~~------------ 893 (1060)
T PLN03218 830 WALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENL-GISADSQKQSNLS-TLV-DGFG------------ 893 (1060)
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHh-ccCCCCcchhhhH-HHH-Hhhc------------
Confidence 799999999987 46677777777767888888888777766543 33443322 2222 121 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 001414 805 EVRSTVAELENAVRVFSHLSAASNLHLHG 833 (1082)
Q Consensus 805 ~~~~a~~~l~~A~~~f~~l~~~~~~~~~~ 833 (1082)
...++|..+|.++...|-.|.+.
T Consensus 894 ------~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 894 ------EYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ------cChHHHHHHHHHHHHcCCCCCcc
Confidence 01367999999999888766554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-23 Score=230.51 Aligned_cols=350 Identities=19% Similarity=0.173 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1082)
...|+..|-++++++|+.+.+|..+|..|...-+...|..+|+++..++|.+..++-..+..|....+++.|..+.-.+-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34556666666666666666666666666655566666666666666666665555555555555555555555544433
Q ss_pred HhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 190 QVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 190 ~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
+..|.. ....|..+|..|...+++..|+..|+.++..+|.+..+|..+|.+|...|. +..|++.|.++..++|.+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHhH
Confidence 333322 112233355555555555555555555555555555555555555555555 5555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHHHcCCHHHHH-------------------
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAG------------------- 325 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~------------------- 325 (1082)
.+.+..+.+....|.|.++...+...+..... ....++++..++..++..|-+.+|.
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 55555555555555555544444443321100 0011112222222222222222111
Q ss_pred ----------------------------------------------------HHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 001414 326 ----------------------------------------------------LYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1082)
Q Consensus 326 ----------------------------------------------------~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1082)
.++-..++ -......|+++|..|+
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls----l~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS----LAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH----HhhccchHHHHhHHHH
Confidence 11111111 1222455677776665
Q ss_pred H--------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001414 354 K--------LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (1082)
Q Consensus 354 ~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~ 424 (1082)
. ..+-..|+.++.++++...++...|..||.+ ...|++.-|..+|-+.+...|.....|.+++.++ ...+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 5 1233467777777777777777777777766 5556777777777777777777777777777766 6667
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 425 TGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 467 (1082)
Q Consensus 425 ~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 467 (1082)
++.|-..+.+ ....|.+...|...+.+....|+.-++...|.-
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7777777766 444555556666666666666766666666655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=225.33 Aligned_cols=505 Identities=14% Similarity=0.118 Sum_probs=348.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Q 001414 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1082)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1082)
+-.-+..+.+|.-|+-+-.++..+. .+ +.-.+.+|.|++-.|++..|......- .+...+..+.+..+.++....+
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~-~d-p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~- 97 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT-ND-PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE- 97 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc-CC-hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH-
Confidence 3334556677777777777776665 44 333566777777777777777666654 3445566666666666666665
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001414 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
++.|+.++.+. .. -.++..+. +..+ +......+.. ..
T Consensus 98 --~~~al~vl~~~-~~-~~~~f~yy-----------------------------~~~~------~~~l~~n~~~----~~ 134 (611)
T KOG1173|consen 98 --WDQALLVLGRG-HV-ETNPFSYY-----------------------------EKDA------ANTLELNSAG----ED 134 (611)
T ss_pred --HHHHHHHhccc-ch-hhcchhhc-----------------------------chhh------hceeccCccc----cc
Confidence 66666655533 00 00110000 0000 0000000000 00
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHh
Q 001414 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA--AKI 405 (1082)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ka--l~~ 405 (1082)
. ........++..|.+|....+.++|...|..++..++.+.+++..+.....-..+ +-...+... -..
T Consensus 135 ~--------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~--Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 135 L--------MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQ--EEFELLESLDLAML 204 (611)
T ss_pred c--------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchh--HHHHHHhcccHHhh
Confidence 0 0111223455567777777777777777777777777777666655444332210 001111100 000
Q ss_pred CCCCHHHHHHHHHHHhcC-CHHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001414 406 DPRDAQAFIDLGELLISS-DTGAALDAF--KTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 482 (1082)
Q Consensus 406 ~p~~~~~~~~la~~~~~~-~~~~Al~~l--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 482 (1082)
...+......+-.+.... .-..++... ....+...++.++...+..++..++|.+...++...+.
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle------------ 272 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE------------ 272 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh------------
Confidence 001111111111100000 000000000 11233445677888889999999999999999999888
Q ss_pred chhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 001414 483 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL-FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 561 (1082)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~ 561 (1082)
..|....++ ..+| ++...|+..+-..+-.+++..+|+.+-.|+.+|.
T Consensus 273 -------------------------------~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 273 -------------------------------KDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred -------------------------------hCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344444444 4455 8888899888888888899999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CcHHHHHHhHhHHHHHHhhhh
Q 001414 562 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNE 640 (1082)
Q Consensus 562 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~d~~~~~~Lg~~~y~~~~~~~ 640 (1082)
.|...|++.+|..+|.++..++|....+|..+|..+.-.|..++|+..|..+.++.+. +-+..+ +|.- |..+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgme-y~~t---- 393 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGME-YMRT---- 393 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHH-HHHh----
Confidence 9999999999999999999999999999999999999999999999999999998766 344444 5544 8878
Q ss_pred ccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHHH
Q 001414 641 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV--FVQMPDVWINLAHVY 718 (1082)
Q Consensus 641 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~la~~~ 718 (1082)
++++.|..+|.+++.+.|.++..++.+|.+....+.|.+|..+|+.++...+... .+.....+.||||+|
T Consensus 394 --------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 394 --------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred --------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999995553211 113556799999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH
Q 001414 719 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790 (1082)
Q Consensus 719 ~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~ 790 (1082)
.+++.+.+||..|+++|.. .|.++.++..+|.+|...|+++.|+..|.+++-+.|++..+.--|+.+++.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999998 788999999999999999999999999999999999998777666665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-22 Score=241.02 Aligned_cols=456 Identities=10% Similarity=-0.008 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+.|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|++|+.+|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555555555555555555554333344555555555555555555555222223333333344555555555555555
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1082)
++++..+|++ +.++..++.++...++.++|+..++++...+|.+... ..++.++...++ ..+|+..+++++..+|
T Consensus 126 ~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P 200 (822)
T PRK14574 126 QSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCC
Confidence 5555555555 4444555555555555555555555555555543332 222333322222 3335555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhH
Q 001414 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1082)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1082)
.+..++..+...+...|-...|.++...--..... ......-...+.-..+.+ .. .+.....
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a------------~~----~~~~~~~- 262 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMA------------VL----PTRSETE- 262 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhc------------cc----ccccchh-
Confidence 55555555555555555555555444332111000 000000011111111111 00 0000000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-------ETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLG 417 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la 417 (1082)
+.--.+.|+..++.++...|..+ .+..-.-.++...|++.+++..|+.+.... |-...+...++
T Consensus 263 --------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 263 --------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred --------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00012344555555554322211 122233444455556666666665554332 22333444455
Q ss_pred HHH-hcCCHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh-hhcccccchhhhh
Q 001414 418 ELL-ISSDTGAALDAFKTKAG-------EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL-TLLDSKTKTYVID 488 (1082)
Q Consensus 418 ~~~-~~~~~~~Al~~l~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~ 488 (1082)
..| ..+.+.+|+.+|..... .+........|...|...+++++|..++++.....|+. .....
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-------- 406 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-------- 406 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC--------
Confidence 555 55666666666665211 12223334667788999999999999999998755531 10110
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 568 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 568 (1082)
.....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.
T Consensus 407 ---------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 407 ---------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred ---------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 11115677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCc
Q 001414 569 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 621 (1082)
Q Consensus 569 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d 621 (1082)
+..|...++.++.++|.+..+...++.++..+++|.+|......++...|.+-
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999999999999999999999999999999998833
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=216.19 Aligned_cols=474 Identities=18% Similarity=0.187 Sum_probs=246.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~ 202 (1082)
.+++.++..|-....+.+|+..|+-+++ ..|+....-+.+|.+++++.+|.+|+++|+.++..-|... ..+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 4677788888888889999999988875 3577767778889999999999999999999998888752 345567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--PYCAMALNYLANHFFF 280 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 280 (1082)
+|..+.+.|.|+.|+..|..+++..|+.. +-+.|..+++..|+ .++..+.|.+++.+. |++.. |..
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddk--------yi~ 349 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDK--------YIK 349 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCccc--------ccC
Confidence 88889999999999999999999988544 44566677788888 666666777776542 11100 000
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1082)
..+- ---.++..++.. ..+ -.....+-..|..+...+.+.+. |.. ..-+..|.
T Consensus 350 ~~dd-p~~~ll~eai~n--------d~l-----k~~ek~~ka~aek~i~ta~kiia--pvi-~~~fa~g~---------- 402 (840)
T KOG2003|consen 350 EKDD-PDDNLLNEAIKN--------DHL-----KNMEKENKADAEKAIITAAKIIA--PVI-APDFAAGC---------- 402 (840)
T ss_pred CcCC-cchHHHHHHHhh--------HHH-----HHHHHhhhhhHHHHHHHHHHHhc--ccc-ccchhccc----------
Confidence 0000 000000000000 000 00011111222222222222110 110 00011110
Q ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH-h--cCCHHHHHHHHH
Q 001414 361 ALTNFEKVLEI---YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAFIDLGELL-I--SSDTGAALDAFK 433 (1082)
Q Consensus 361 A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~-~~~~~la~~~-~--~~~~~~Al~~l~ 433 (1082)
.++-..++. .|--.+.-...+.-|.+.|+++.|+++++-.-..+.... .+-.+|..++ . -.++..|..+..
T Consensus 403 --dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 403 --DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred --HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 011111110 011112223344445555555555555543333222111 1111111111 1 111222222222
Q ss_pred h-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCc
Q 001414 434 T-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 512 (1082)
Q Consensus 434 ~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (1082)
. ......++.++.+.|.+.+..|++++|...|++++.
T Consensus 481 ~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------------------------------ 518 (840)
T KOG2003|consen 481 IALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------------------------------------------ 518 (840)
T ss_pred HHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------------------------------
Confidence 1 111222334444555555566666666666666665
Q ss_pred CCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHH
Q 001414 513 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 513 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
.+.....+++++|..+..+|+.++|+.+|-++..+--+++.+++.++.+|....+..+|++++-++..+-|++|.++..
T Consensus 519 -ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 519 -NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred -CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 3334555666666666666666666666666555555566666666666666666666666666666666666666666
Q ss_pred hhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHH
Q 001414 593 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 672 (1082)
Q Consensus 593 lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~ 672 (1082)
+|.+|-+.|+-.+|..++-......|. +....-.||.. |... .-.++|+.+|+++--+.|+...+.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~-nie~iewl~ay-yidt------------qf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPC-NIETIEWLAAY-YIDT------------QFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCc-chHHHHHHHHH-HHhh------------HHHHHHHHHHHHHHhcCccHHHHH
Confidence 666666666666666555544444444 33333334443 4444 444455555555544445444444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p 700 (1082)
..++.|+.+.|+|.+|.++|+......|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 4444444455555555555554444444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-22 Score=247.98 Aligned_cols=429 Identities=13% Similarity=0.014 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1082)
.++..+..++...++++.|..++..+.... ..| ...++..+..+|.+.|+++.|...|+.+.. .+..+|..+...
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSG-FEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHH
Confidence 334444444444444444444444444321 111 233344444444444555555444444422 133444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-hcCCHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001414 386 YVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL-ISSDTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFESA 461 (1082)
Q Consensus 386 ~~~~g~~~~A~~~l~kal~~~p~-~~~~~~~la~~~-~~~~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A 461 (1082)
|.+.|++++|+.+|.++....+. +..++..+...+ ..+....+..++.. ..+...+..+++.+...|.+.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 44555555555555444433211 122233333333 44444444444333 223334456677777788888888888
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001414 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541 (1082)
Q Consensus 462 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 541 (1082)
..+|+.+.. .+..+|..+...|...|++++|..+
T Consensus 279 ~~vf~~m~~----------------------------------------------~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 279 RCVFDGMPE----------------------------------------------KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHHHHhCCC----------------------------------------------CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 888775422 2556777788888888888888888
Q ss_pred HHHHHHhC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 542 YRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 542 ~~~~l~~~-p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
|.++.... .-+..++..+...+...|.+++|...+..+++.. +.+..++..+...|.+.|++++|...|+++..
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 88876532 2235677777888888888888888888887765 55666778888888888888888888887643
Q ss_pred CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001414 620 KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 698 (1082)
Q Consensus 620 ~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~ 698 (1082)
++..+|..|... |... |+.++|+++|+++...... |..+++.+...+.+.|.+++|..+|+.+.+.
T Consensus 389 ~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 389 KNLISWNALIAG-YGNH------------GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred CCeeeHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 356677777777 7777 8888888888888765533 6667777888888888888888888888765
Q ss_pred hcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Q 001414 699 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 699 ~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 778 (1082)
.+- . .+...|..+..+|.+.|++++|.++++++ +..++..+|..|..++...|+.+.|..++++++.+.|++.
T Consensus 456 ~g~--~-p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 456 HRI--K-PRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred cCC--C-CCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 321 0 13557788888888888888888877653 3466777888888888888888888888888888888877
Q ss_pred chhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 001414 779 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASN 828 (1082)
Q Consensus 779 ~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~ 828 (1082)
..+..|+.+|...| .+++|.++|..+...+-
T Consensus 529 ~~y~~L~~~y~~~G-------------------~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 529 NNYVVLLNLYNSSG-------------------RQAEAAKVVETLKRKGL 559 (697)
T ss_pred cchHHHHHHHHhCC-------------------CHHHHHHHHHHHHHcCC
Confidence 76666666555444 47888888888876653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=250.25 Aligned_cols=463 Identities=12% Similarity=0.002 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLA 275 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 275 (1082)
.+..+...+...|++.+|+..|..+....| -+...+..+...+...++ +..+...+..+.... ..+..+++.+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~---~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS---IRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 455666677777888888888877765432 244556666666666666 666666666655432 22456666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc
Q 001414 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1082)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1082)
..|...|+++.|..+|+.+.. .+..+|..+...|...|++++|+.+|.++.... ......++..+...+...
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHhcC
Confidence 666666666666666665531 234556666666666666666666666665431 122233455555556666
Q ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001414 356 GDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1082)
Q Consensus 356 g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~ 434 (1082)
|....+...+..+++.. ..+..++..+...|.+.|++++|..+|+.+.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------------------------- 286 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------------------------------- 286 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------
Confidence 66666666655555432 2244555666666666666666666665442
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCC
Q 001414 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (1082)
..+...|+.+...|.+.|++++|+.+|.++...+ .
T Consensus 287 ----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-----------------------------------------~ 321 (697)
T PLN03081 287 ----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-----------------------------------------V 321 (697)
T ss_pred ----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------------------------------------C
Confidence 1234567888888999999999999999887632 2
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
.| +..++..+..++...|.++.|..++..+++.. +.+..++..+..+|.+.|++++|..+|+++.. .+..+|..+
T Consensus 322 ~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~l 397 (697)
T PLN03081 322 SI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNAL 397 (697)
T ss_pred CC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence 33 45678888899999999999999999998865 55678889999999999999999999998754 356789999
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC--CCHHH
Q 001414 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYA 671 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a 671 (1082)
...|.+.|+.++|+..|+++......++..++..+... +... |..++|..+|+.+.+..+ .+...
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYS------------GLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HhcC------------CcHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999988777788888888887 7777 999999999999987543 35567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 751 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La 751 (1082)
++.+..+|.+.|++++|.++++++. ..| +..+|..|...+...|+++.|...+++++.. .|.+...|..|+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~-~~p------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~ 535 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAP-FKP------TVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLL 535 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCC-CCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHH
Confidence 8889999999999999999987642 122 5678999999999999999999999999876 566778889999
Q ss_pred HHHHHhccHHHHHHHHHHHHhhC
Q 001414 752 RTHYEAEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 752 ~~~~~~g~~~eA~~~l~~al~~~ 774 (1082)
.+|...|++++|.++++.+....
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999887653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-22 Score=239.30 Aligned_cols=424 Identities=11% Similarity=-0.023 Sum_probs=292.1
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1082)
Q Consensus 89 la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1082)
++.++...|+.. +|+.++++++...|.....+..+|.++...|++++|+.+|++++..+|+++.++..+
T Consensus 74 ll~l~~~~G~~~-----------~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 74 WLQIAGWAGRDQ-----------EVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHHcCCcH-----------HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 345555555555 999999999933344444444558899999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1082)
+.++...+++++|+..+.+++..+|.. .. +..++.++...++..+|+..|++++..+|++..++..+..++...|-
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~~dp~~-~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~-- 218 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAERDPTV-QN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI-- 218 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhcccCcch-HH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999986 33 36667777667888779999999999999999999999999988887
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcC---------C---HHHHHHHHHHHHhccCCCCCc----hHHHHH
Q 001414 249 GIRKGMEKMQRAFEIYPYCAMALN--YLANHFFFTG---------Q---HFLVEQLTETALAVTNHGPTK----SHSYYN 310 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g---------~---~~~A~~~~~~~l~~~~~~~~~----~~~~~~ 310 (1082)
...|.+...+--.........+. ..+....+.+ . .+.|+.-++.++......|.. -.+...
T Consensus 219 -~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 219 -VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred -cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 66777655542222211111111 1111122111 1 122333333333322222221 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHH
Q 001414 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGH 384 (1082)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~ 384 (1082)
.-.++...|++.+++..|+.+......-| ..+....|..|+..+++++|+.+|..++...| ........|..
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 44455555666666666665543211112 22344455666666666666666666655331 12222345555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001414 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464 (1082)
Q Consensus 385 ~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 464 (1082)
.|...+++++|..++.++....|-.... .+.. .....+.-......++.++...|++.+|...
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~---~~~~--------------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGV---YGLP--------------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEec---cCCC--------------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5556666666666666665543310000 0000 0012223345667788899999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001414 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 544 (1082)
Q Consensus 465 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 544 (1082)
+++.+. ..|.++.+...+|.++...|.+..|...++.
T Consensus 439 le~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 439 LEDLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999987 6789999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHH
Q 001414 545 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 590 (1082)
Q Consensus 545 ~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 590 (1082)
+...+|.+..+...++.++...+++.+|......++..+|+++.+.
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999998655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=213.42 Aligned_cols=458 Identities=19% Similarity=0.159 Sum_probs=324.5
Q ss_pred HHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHH
Q 001414 109 HFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDS 181 (1082)
Q Consensus 109 ~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A 181 (1082)
.+.+|+..|+-.++. -|+....-+.+|.++++..+|.+|+.+|+.++..-|.- +..+..+|..+.+.|.|+.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 344888888876643 36666677889999999999999999999999988853 56678888899999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C---------CCH-HHHHHHH--HHHHHh---
Q 001414 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--P---------ENV-EALVALA--VMDLQA--- 244 (1082)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p---------~~~-~a~~~la--~~~~~~--- 244 (1082)
+..|..++...|+. ..-+++..|++..|+-++-.+.|.+++.+- | +++ ..++.-+ .-.+..
T Consensus 296 insfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999997 345788999999999999999999998752 1 111 1122111 111111
Q ss_pred ccHHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 245 NEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1082)
Q Consensus 245 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1082)
.+....++++..--+.+. +.|+....+ .++-..+......+...+.-...+-.+.+.|+++
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~-----------------dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGC-----------------DWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhccc-----------------HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 111112333332222221 122222111 1111111111112222234445566677778888
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1082)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1082)
.|++.+.-.-+. .+.....+-.+|..+++.+ .++..|..+-..++.++.-++.++.+.|.+-+..|++++|...|+
T Consensus 437 ~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 437 GAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 777776554431 1122223344555555553 367777777777777777777777777777777788888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001414 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 478 (1082)
Q Consensus 401 kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 478 (1082)
.++..+.....++++++..+ ..|+.++|+.+|-+ ......+.++++.++.+|..+.+..+|++++.++..
T Consensus 515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s-------- 586 (840)
T KOG2003|consen 515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS-------- 586 (840)
T ss_pred HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--------
Confidence 88777777777777777777 77788888877777 223345678888888888888888888888888766
Q ss_pred ccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHH
Q 001414 479 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 558 (1082)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~ 558 (1082)
+-|.++.++..+|.+|-+.|+...|.+++-....-.|.+.+..-+
T Consensus 587 -----------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 587 -----------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred -----------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 567788888889999988898888888888888888888888888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~ 631 (1082)
|+..|....-+++|+.+|+++.-+.|+...+...++.|+.+.|+|..|...|+.+-...|. +...+-.|..+
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri 703 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRI 703 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 8888888888888999999988888888888888888888889999999999888888877 55555444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=216.24 Aligned_cols=467 Identities=15% Similarity=0.144 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
+.+|.-|+-+-+++..+. .+|...+.+|.+++..|++..|......- .....+..+.+..+.+++...+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888899999999999999998877654 5666778999999999999999999999988
Q ss_pred HH------HHhCCCC------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001414 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1082)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1082)
.. +..+|.+ ...+.+..|.+|..+.+.++|...|..++..++.+.+++..+-...+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33 1111111 12345667888888999999999999999999999998887776655
Q ss_pred HhccHHhHHHHHHHHHHH-HH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhccCCCCCchHHHHHHHHHHHHcC
Q 001414 243 QANEAAGIRKGMEKMQRA-FE-IYPYCAMALNYLANHFFFTGQHFLVEQLTE-TALAVTNHGPTKSHSYYNLARSYHSKG 319 (1082)
Q Consensus 243 ~~~~~~~~~~A~~~~~~a-l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~~~~~~~~~~~~~la~~~~~~g 319 (1082)
.... +-...+... +. ....+...+..+-.+......-........ ..+ .....+.......+..++..+
T Consensus 187 lt~~-----Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl---~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 187 LTAQ-----EEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL---IGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred cchh-----HHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh---hhhhhcHHHHHHHHHHHHHcC
Confidence 5421 111111110 00 000011100000000000000000000000 000 001123344555555666666
Q ss_pred CHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001414 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1082)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1082)
+|.+....+...+. ..|.+..++..-..++..+|+..+-...-.+++..+|+.+..|+.+|..|...|++.+|..+|
T Consensus 259 ~f~~c~kit~~lle---~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 259 RFKECLKITEELLE---KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred hHHHHHHHhHHHHh---hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 66666666666655 223333322222225556666665555555666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001414 400 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479 (1082)
Q Consensus 400 ~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 479 (1082)
.|+..++|....+|+.+|. .+...|..++|+..|..|.+
T Consensus 336 SKat~lD~~fgpaWl~fgh--------------------------------sfa~e~EhdQAmaaY~tAar--------- 374 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGH--------------------------------SFAGEGEHDQAMAAYFTAAR--------- 374 (611)
T ss_pred HHHhhcCccccHHHHHHhH--------------------------------HhhhcchHHHHHHHHHHHHH---------
Confidence 6666666665555544433 33333444444444444433
Q ss_pred cccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHH
Q 001414 480 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 559 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~l 559 (1082)
.-|......+.+|.-|...+++..|..+|.+++.+.|.++-.+..+
T Consensus 375 ----------------------------------l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 375 ----------------------------------LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred ----------------------------------hccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 1122223333444444444555555555555555555555555555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHc-------CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHH
Q 001414 560 AAIAKARNNLQLSIELVNEALKVN-------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 632 (1082)
Q Consensus 560 a~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~ 632 (1082)
|.+....+.+.+|..+|+.++..- +.....+.++|.++.+.+.+.+|+..|++++.+.|. +..++.++|-+
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~i- 498 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYI- 498 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHH-
Confidence 555555555555555555444211 111223444455555555555555555555444444 44444444444
Q ss_pred HHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 633 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 633 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
|... |+++.|+..|.++|-+.|+|..+-..|
T Consensus 499 y~ll------------gnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 499 YHLL------------GNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHh------------cChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4444 445555555555555555544443333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-21 Score=214.70 Aligned_cols=645 Identities=15% Similarity=0.062 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SDSLEF 184 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~Al~~ 184 (1082)
.+.+..|..+|+.++..+|.+ ....|.+......|..|...+..+.... .|...+..+..++.+.+.- +-|.-.
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~ 456 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLL 456 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHH
Confidence 356667777888887777765 6667777777888888888887776666 5555566666665542211 111111
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC
Q 001414 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1082)
+.. ...+..++ -+...+...|...|-+++.++|....++..||.+|....+ ...|..+|.++++++
T Consensus 457 ~~e---------~~~~w~a~--~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLD 522 (1238)
T KOG1127|consen 457 ECE---------NSEFWVAL--GCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELD 522 (1238)
T ss_pred HHH---------HHHHHHHH--HHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC
Confidence 111 01111111 1233458889999999999999999999999999998877 889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhh
Q 001414 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1082)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1082)
+.+..+....+..|....+++.|..+....-+.... ......|..+|-.|...+++..|+..|+.+++ .+|....+
T Consensus 523 atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~ 598 (1238)
T KOG1127|consen 523 ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNL 598 (1238)
T ss_pred chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHH
Confidence 999999999999999999999988874443322110 11223455577777777777777777777776 66777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~ 424 (1082)
|.++|.+|...|.+..|++.|.++..++|.+..+.+..+.+.+..|.+.+|+..+...+........+...++
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa------- 671 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA------- 671 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH-------
Confidence 7777777777787777777777777777777777777777777777777777777777665444433444433
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhh
Q 001414 425 TGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 504 (1082)
Q Consensus 425 ~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1082)
+.+...+..+...|-...|..++++++......-.- . ..-+...+.+-...--.|.+
T Consensus 672 ------------------E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h-~----~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 672 ------------------ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH-S----LQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred ------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-h----hhhhHHHHHHHhHHHHHHHH
Confidence 344444555555566666666666665532100000 0 00001111111111112222
Q ss_pred hccCCCCcCCCCchHHHHHHHHH--HHHhcCCh---H---HHHHHHHHHHHhCCChHHHHHHHHHHHHH--------hcC
Q 001414 505 FENDGNHVELPWNKVTVLFNLAR--LLEQIHDT---V---AASVLYRLILFKYQDYVDAYLRLAAIAKA--------RNN 568 (1082)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~---~---~A~~~~~~~l~~~p~~~~a~~~la~~~~~--------~g~ 568 (1082)
+. |+.+..++..+. -+...+.. + -+.+.+-..++.-.. +..|++||..|.. ..+
T Consensus 729 ~e---------~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 729 EE---------PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred hc---------ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchh
Confidence 21 222222221111 11122211 1 233333333332222 5567777766554 123
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHh
Q 001414 569 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 648 (1082)
Q Consensus 569 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~ 648 (1082)
...|+.++++++++..++...|..+|.+ ...|++.-|..+|-+.+...|. ....|+++|.+ ++..
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL-~l~n------------ 863 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVL-VLEN------------ 863 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheecccee-EEec------------
Confidence 4579999999999999999999999998 6678999999999999988887 77788899988 8877
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 728 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai 728 (1082)
.+++.|...|.++..++|.|...+.+.+.+....|+.-++..+|....+......-......|++--.....+|+++.-|
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 89999999999999999999999999999999999999999999986655533221223445566666777788777766
Q ss_pred HHHHHH------HHhh--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------CCCcchhhHHHHHHHHHHHh
Q 001414 729 KMYQNC------LRKF--YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVAMQKFSAS 794 (1082)
Q Consensus 729 ~~~~~a------l~~~--~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~nla~~~~~~~~~ 794 (1082)
..-.++ ++.| ..|+..-++...|......+.+..|...+.+++.+- ..++.+.-++|.++.-.+..
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 654443 3333 246668889999999999999999998887776541 12333444455544333331
Q ss_pred h-----hhcc-CCCHHHHHH------HHHHHHHHHHHHHHHhhCCC
Q 001414 795 T-----LQKT-RRTADEVRS------TVAELENAVRVFSHLSAASN 828 (1082)
Q Consensus 795 ~-----l~~~-~~~~~~~~~------a~~~l~~A~~~f~~l~~~~~ 828 (1082)
. +... ....+++.. -...++.+.+.|++..+..+
T Consensus 1024 e~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1024 ESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred hhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 1 0000 111112221 14567888888888766554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=204.81 Aligned_cols=332 Identities=15% Similarity=0.111 Sum_probs=282.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh-hcCCC--CCHHHHHHHHH
Q 001414 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT-KAGEE--VPIEVLNNIGV 450 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~-~~~~~--~~~~~~~~la~ 450 (1082)
.++..++..|.++.+.|....|+..|..++...|-+..+|..|+.+... +..+.. ..+.+ .....-+.++.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999887611 111111 11111 23333445666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001414 451 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 530 (1082)
Q Consensus 451 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 530 (1082)
++......++++.-+...+.. ..|....+-...|.+..
T Consensus 236 a~~el~q~~e~~~k~e~l~~~------------------------------------------gf~~~~~i~~~~A~~~y 273 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSV------------------------------------------GFPNSMYIKTQIAAASY 273 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------------------------------------------cCCccHHHHHHHHHHHh
Confidence 777777888888877776663 24566777778899999
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHH
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 610 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 610 (1082)
...+++.|+..|+.+.+.+|-..+-.-.+..++.-.++-.+-.-+.+.+..++.--+++...+|+.|.-.++.++|+.+|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 99999999999999999999766666666666666666666666777888889888999999999999999999999999
Q ss_pred HHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Q 001414 611 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKD 690 (1082)
Q Consensus 611 ~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~ 690 (1082)
+++++++|. ...+|..+|.- |..+ ++...|++.|+.++.++|.+..+|++||.+|.-++..-=|+-
T Consensus 354 kRALkLNp~-~~~aWTLmGHE-yvEm------------KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 354 KRALKLNPK-YLSAWTLMGHE-YVEM------------KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHHhcCcc-hhHHHHHhhHH-HHHh------------cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 999999998 78889999999 9999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 001414 691 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 691 ~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~a 770 (1082)
+|+++....| .++.+|..||.||.+.++.++|++.|.+++.. ...+..++..||..|...++..+|..+|.+-
T Consensus 420 YfqkA~~~kP-----nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 420 YFQKALELKP-----NDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHhcCC-----CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999998 88999999999999999999999999999986 4556899999999999999999999999999
Q ss_pred HhhC
Q 001414 771 IHLA 774 (1082)
Q Consensus 771 l~~~ 774 (1082)
++..
T Consensus 493 v~~~ 496 (559)
T KOG1155|consen 493 VEVS 496 (559)
T ss_pred HHHH
Confidence 9854
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-20 Score=196.43 Aligned_cols=439 Identities=17% Similarity=0.174 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhh------hhhhhHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET------KQREKEEHFILATQ 115 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~------~~~~k~~~~~~A~~ 115 (1082)
.-+.+|..|+....++.|.-.|+...+. ...| +...+.+...-.+.+. ....+.......+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~--k~~F----------L~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~ 147 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSK--KSAF----------LRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELI 147 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchH--HHHH----------HHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHH
Confidence 5678999999999999999999986442 1111 1111111111000000 00011112223344
Q ss_pred HHHHHHhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 116 YYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 116 ~~~~al~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.+++-++. ...++..++..|.++-..|....|+..|..++...|-+-.+|+.++.+... +.........
T Consensus 148 ~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~ 220 (559)
T KOG1155|consen 148 ELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVG 220 (559)
T ss_pred HHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhc
Confidence 44443332 234567888899999999999999999999999999999999988876432 3333333333
Q ss_pred CCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHH
Q 001414 192 HPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 192 ~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
-|.+ ..-.-+.++.++..+...++++.-+++.+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|....
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcch
Confidence 4432 2334456788888888999999999988888 78888888888888888888 99999999999999998888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
-.-.+.++++-..+-.+..-+...+... +.-.++++-.+|..|...++.++|+.+|+++++ .+|....+|..+|
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmG 371 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMG 371 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhh
Confidence 7888888887777766555555555433 455567788888888888899999999999988 7788888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al 429 (1082)
.-|..+.+...|+..|.++++++|.+..+|+.||..|.-++.+.=|+-+|++++...|+++..|..|
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL------------- 438 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL------------- 438 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH-------------
Confidence 9999999999999999999999999999999999999999998889999999998888877655554
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCC
Q 001414 430 DAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 509 (1082)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 509 (1082)
|.+|.+.++.++|+.+|..++..
T Consensus 439 -------------------G~CY~kl~~~~eAiKCykrai~~-------------------------------------- 461 (559)
T KOG1155|consen 439 -------------------GECYEKLNRLEEAIKCYKRAILL-------------------------------------- 461 (559)
T ss_pred -------------------HHHHHHhccHHHHHHHHHHHHhc--------------------------------------
Confidence 55666667777777777776652
Q ss_pred CCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF-------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 510 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
......+++.+|.+|..+++..+|..+|.+.++ ..|....+...|+..+.+.+++++|..+...++.-
T Consensus 462 -----~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 -----GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred -----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 222446677777777777777777777777666 34555666666777777777777777666665554
Q ss_pred c
Q 001414 583 N 583 (1082)
Q Consensus 583 ~ 583 (1082)
+
T Consensus 537 ~ 537 (559)
T KOG1155|consen 537 E 537 (559)
T ss_pred C
Confidence 3
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=222.75 Aligned_cols=312 Identities=21% Similarity=0.244 Sum_probs=281.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
..+.++..+|..|..+..+ +..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~y---------~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQY---------NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566677777777766544 3569999999976777777888889999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
.+...-....++....+--+---+.+..+..+|+. +..|..+|.||..+++++.|+.+|+++++++|....++..+|.-
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77666666667777766555555667788889999 78899999999999999999999999999999999999999998
Q ss_pred HHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCC
Q 001414 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1082)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1082)
+....+ ++.|+.+|++++..+|.+..+|+.||.+|.++++++.|+-.|.+++. .+|.+......+|.++.+.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhh
Confidence 888888 99999999999999999999999999999999999999999999994 468888999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1082)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1082)
.++|+.+|++|+. .+|.++...+..|.+++..+++++|+..++.+-..-|+...+++.+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 9999999999998 7788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHH
Q 001414 401 KAAKIDPRDAQ 411 (1082)
Q Consensus 401 kal~~~p~~~~ 411 (1082)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 99999997654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=208.47 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~ 423 (1082)
....+|...+...++..|+.+|..++.++ .+...+.+.+.+|+..|.+...+....++++..-....-+..++
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa------ 298 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA------ 298 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH------
Confidence 45678999999999999999999999999 88888999999999999999999988887766543332223332
Q ss_pred CHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhh
Q 001414 424 DTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 503 (1082)
Q Consensus 424 ~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1082)
..+..+|..+...++++.|+.+|.+++....
T Consensus 299 -------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~R------------------------------ 329 (539)
T KOG0548|consen 299 -------------------KALARLGNAYTKREDYEGAIKYYQKALTEHR------------------------------ 329 (539)
T ss_pred -------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc------------------------------
Confidence 2333477788888999999999999876210
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 504 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
. ..++......+++........-.+|.-...-..-|..++..|+|..|+..|.+++..+
T Consensus 330 -----------t----------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 330 -----------T----------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred -----------C----------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 0 3344455566677777776666777766666666888888888888888888888888
Q ss_pred CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHh
Q 001414 584 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 663 (1082)
Q Consensus 584 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 663 (1082)
|+++.+|.+.+.||.++|.+..|+...+.++++.|. ..-.++.-|.+ ++.+ ++|++|++.|.++++
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale 454 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALE 454 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888776 67777777777 7777 888888888888888
Q ss_pred hcCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 001414 664 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 694 (1082)
Q Consensus 664 ~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~ 694 (1082)
.+|++..+..++..++..+.......++.++
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 8888888887777777654444444445544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-19 Score=191.21 Aligned_cols=449 Identities=15% Similarity=0.149 Sum_probs=315.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
...++..+.-++..++|...+...+.+++..|.++..+..+|..+...|+-++|..+...++..++.+ ...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHH
Confidence 34566777777778888888888888888888888888888888888888888888888888888877 67788888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001414 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1082)
-...+|++|+.+|..|+.+.|+|...|.-++.+..+.++ +.-....-.+.+++.|.....|..++..++..|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888887 77777777788888888888888888888888888888
Q ss_pred HHHHHHHHhccCCCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 001414 288 EQLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1082)
Q Consensus 288 ~~~~~~~l~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1082)
..+++...+.....+. ...+...........|.+++|++.+..--.. .-+........+.+++..+++++|+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 8888777765542222 2344555667777888888888777654431 1222333455788899999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCC
Q 001414 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEV 440 (1082)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~ 440 (1082)
..|...+..+|++...+..+-.++.+..+.-+++ ..|...-+..|.. .....++... ....+...+.-+-...-...
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999999999999888888877776333444444 5555544444433 2222222222 22333333333333111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCC-------CcC
Q 001414 441 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN-------HVE 513 (1082)
Q Consensus 441 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~ 513 (1082)
.+.+..++-.+|-... .. .++++.+. ++...+...+. ..+
T Consensus 319 ~p~vf~dl~SLyk~p~---k~-~~le~Lvt-----------------------------~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPE---KV-AFLEKLVT-----------------------------SYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred CCchhhhhHHHHhchh---Hh-HHHHHHHH-----------------------------HHHhhcccccCCCcccccccC
Confidence 2222333333322211 11 12222221 11111111110 012
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
.+....+.++.++.-+...|+++.|..++..++...|..++.|+..|.++...|++++|..++..+.+++-.+..+-...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 33345667788999999999999999999999999999999999999999999999999999999999997776666678
Q ss_pred hhhhhcccchHHHHHHHHHhhhcC
Q 001414 594 GDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
+...++.++.++|.++..+.....
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcc
Confidence 888899999999999888766544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=190.89 Aligned_cols=345 Identities=18% Similarity=0.177 Sum_probs=276.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001414 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1082)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1082)
.+|.++.-++.+|..++..|++..|+..|..++..+|++..+++.+|.+|+..|+-.-|+.-+.+++.+.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3566778889999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
.|.+++++|.++.|...|..+|..+|.+... ...++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 9999999999999999999999999965432 2222211100
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHH
Q 001414 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1082)
..+......++..|++..|+.+....+. ..|..+..+...+.||+..|++.
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1112223345566888888888888887 66777888888999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEE 439 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~ 439 (1082)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-..-.+- ...+.+.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk---Kv~K~le--------- 274 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK---KVVKSLE--------- 274 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH---HHHHHHH---------
Confidence 9999999999998899999999999999999999999999999999998765443322211 1111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchH
Q 001414 440 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 519 (1082)
Q Consensus 440 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 519 (1082)
-+......++|.+++...++.+...|. ..+...
T Consensus 275 --------s~e~~ie~~~~t~cle~ge~vlk~ep~---------------------------------------~~~ir~ 307 (504)
T KOG0624|consen 275 --------SAEQAIEEKHWTECLEAGEKVLKNEPE---------------------------------------ETMIRY 307 (504)
T ss_pred --------HHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------ccceee
Confidence 122344667888888888888774321 112223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHH
Q 001414 520 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 520 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
...-.+..|+..-+++.+|+..+.+++...|+++.++...+..|+....|+.|+..|+++...++++..+.-.
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3444567788889999999999999999999999999999999999999999999999999999998776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=217.39 Aligned_cols=289 Identities=17% Similarity=0.200 Sum_probs=190.9
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhh
Q 001414 425 TGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 503 (1082)
Q Consensus 425 ~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (1082)
..+|+..|.+ .........++..+|..|+.+++|++|..+|+.+-...|
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p------------------------------ 384 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP------------------------------ 384 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------
Confidence 3444444444 112233446777888888888888888888888876433
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 504 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
....-.-.+..+++.+.+.-+--.+.+..+..+|+.+.+|..+|.+|..+++++.|+++|+++++++
T Consensus 385 -------------~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 385 -------------YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred -------------ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC
Confidence 2222222233333443433333344455566667777777777777777777777777777777777
Q ss_pred CCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHh
Q 001414 584 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 663 (1082)
Q Consensus 584 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 663 (1082)
|....+|..+|.-+....+++.|..+|+.++...|. +..+|+.||.+ |+.. ++++.|.-.|++++.
T Consensus 452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v-y~Kq------------ek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV-YLKQ------------EKLEFAEFHFQKAVE 517 (638)
T ss_pred CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh-eecc------------chhhHHHHHHHhhhc
Confidence 777777777777777777777777777777766665 55667777777 6666 667777777777777
Q ss_pred hcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 001414 664 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 743 (1082)
Q Consensus 664 ~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~ 743 (1082)
++|.|......+|.++.+.|+.++|+.+|++++-.+| .++-..+..|.+++.++++++|+..++..-.. .|.+
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-----kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~e 590 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-----KNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQE 590 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Ccch
Confidence 7777777777777777777777777777777777666 56666677777777777777777777776554 5666
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
..+++.+|++|...|+...|+..|.-|..++|.-
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6777777777777777777777777777777643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-17 Score=186.85 Aligned_cols=410 Identities=19% Similarity=0.182 Sum_probs=324.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 311 LARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
...++.-..+..+++.....++.... .-.+....|-.+...+...|++..+.++|++++...-...+.|+.++.+|..
T Consensus 290 i~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 290 IEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSA 369 (799)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Confidence 33445555566666665554443221 1224455677788889999999999999999998877788999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH--hcCCHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHcC--
Q 001414 389 LGQIEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTK------AGEEVPIEVLNNIGVIHFEKG-- 456 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~--p~~~~~~~~la~~~--~~~~~~~Al~~l~~~------~~~~~~~~~~~~la~~~~~~g-- 456 (1082)
.|....|+.+++..+... |.++..+...+.++ ..+.+++++.+..+. ......+..+..+|.+|...-
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 999999999999999988 88888888888877 888999999888882 223445667777777765431
Q ss_pred ---------CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHH
Q 001414 457 ---------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 527 (1082)
Q Consensus 457 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 527 (1082)
...++++.++++++ .+|.++.+.+.++.
T Consensus 450 a~~~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lal 486 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLAL 486 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHH
Confidence 23456666666665 67888999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHH
Q 001414 528 LLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606 (1082)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 606 (1082)
-|...++...|....+++++.++ +.+.+|..|+.++...+++.+|+.+...++...|.|.........+-...++.++|
T Consensus 487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 99999999999999999999955 56899999999999999999999999999999998776666666666666666666
Q ss_pred HHHHHHhhhcCCC---------------------------CcH-----H-------------------------------
Q 001414 607 KETFRAASDATDG---------------------------KDS-----Y------------------------------- 623 (1082)
Q Consensus 607 ~~~~~~al~~~~~---------------------------~d~-----~------------------------------- 623 (1082)
+..+...+..-.. .+. +
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 6665554432210 000 0
Q ss_pred -----HHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 001414 624 -----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 698 (1082)
Q Consensus 624 -----~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~ 698 (1082)
.|+..+.. |.. .++.+.|..++.++-.++|..++.++..|.++...|.+.+|...|..++..
T Consensus 647 ~~~~~lwllaa~~-~~~------------~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 647 YLLQKLWLLAADL-FLL------------SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHHHHHHH-HHh------------cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 01111111 111 277788888899999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 699 ASGSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 699 ~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~--~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
+| +.+.+...+|.++...|+..-|.. ++..+++. +|.++++|++||.++.+.|+.+.|..+|.-|+++.+.
T Consensus 714 dP-----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 714 DP-----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CC-----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 98 778899999999999998888888 99999998 7888999999999999999999999999999999999
Q ss_pred CcchhhH
Q 001414 777 NYTLRFD 783 (1082)
Q Consensus 777 ~~~~~~n 783 (1082)
+|...|.
T Consensus 787 ~PV~pFs 793 (799)
T KOG4162|consen 787 NPVLPFS 793 (799)
T ss_pred CCccccc
Confidence 9987764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=216.84 Aligned_cols=305 Identities=18% Similarity=0.160 Sum_probs=222.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001414 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422 (1082)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~ 422 (1082)
...+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+.....
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------- 105 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------- 105 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------
Confidence 3456678888888888889999999888888888888888888888899998888888887643222110
Q ss_pred CCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhh
Q 001414 423 SDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 502 (1082)
Q Consensus 423 ~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1082)
...++..+|.++...|+++.|+.+|.+++.
T Consensus 106 ------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~-------------------------------- 135 (389)
T PRK11788 106 ------------------RLLALQELGQDYLKAGLLDRAEELFLQLVD-------------------------------- 135 (389)
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHc--------------------------------
Confidence 013466778888888888888888888776
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 503 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
..|....++..++.++...|++++|+..+..++...|.+ ...+..+|.++...|++++|+.+|+
T Consensus 136 -----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 136 -----------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred -----------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345566777888888888888888888888888777654 2245667777888888888888888
Q ss_pred HHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHH
Q 001414 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 657 (1082)
Q Consensus 578 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 657 (1082)
++++.+|.+..++..+|.++...|++++|+..|++++...|.....++..++.+ |... |++++|+..
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~A~~~ 271 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEAEGLEF 271 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHHHHHHH
Confidence 888888888878888888888888888888888888776655344555666766 6666 777777777
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 001414 658 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA--QGNFALAMKMYQNCL 735 (1082)
Q Consensus 658 ~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~--~g~~~~Ai~~~~~al 735 (1082)
+++++..+|+...+ ..++.++...|++++|+.+|.+++...| +++.+...++..+.. .|+..+|+..+++++
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P-----~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP-----SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc-----CHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 77777777765444 6777777777777777777777777766 444333223322211 347777777777777
Q ss_pred Hh
Q 001414 736 RK 737 (1082)
Q Consensus 736 ~~ 737 (1082)
+.
T Consensus 346 ~~ 347 (389)
T PRK11788 346 GE 347 (389)
T ss_pred HH
Confidence 53
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-18 Score=175.76 Aligned_cols=476 Identities=17% Similarity=0.196 Sum_probs=360.8
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
.|+..++.+--+...|+..|.--..++++..|..+|+++|..+..|...|+..+.+-++.+....|..++.+++.+-|..
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 45555666666777899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1082)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 275 (1082)
...|+.....-..+|+..-|.++|++-+...| +..+|.....+-+..++ ++.|...|++.+-.+| ....+...+
T Consensus 141 -dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP-~v~~wikya 214 (677)
T KOG1915|consen 141 -DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHP-KVSNWIKYA 214 (677)
T ss_pred -HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecc-cHHHHHHHH
Confidence 67888888888899999999999999999888 46678888888887777 8899999999887776 456778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc
Q 001414 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1082)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1082)
..-...|+...+..+|+.++.....+......+...|..-..+..++.|...|.-++..++.+.. -..+-.+...--+-
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQF 293 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHh
Confidence 88888899999999999988776665555666777777778888999999999999985432211 22233333333334
Q ss_pred CC---HHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHhcCCH
Q 001414 356 GD---FRSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ--AFIDLGELLISSDT 425 (1082)
Q Consensus 356 g~---~~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~--~~~~la~~~~~~~~ 425 (1082)
|+ .+.++ -.|+..+..+|.|.++|+..-.+-...|+.+.-.+.|++++...|.... .|....
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI-------- 365 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI-------- 365 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH--------
Confidence 44 33343 3577788889999999999988888889999999999999887765322 121111
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhh
Q 001414 426 GAALDAFKTKAGEEVPIEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 504 (1082)
Q Consensus 426 ~~Al~~l~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1082)
.+|.+.+. .-....+.+.+.+.|+.++..-|-
T Consensus 366 -----------------YLWinYalyeEle~ed~ertr~vyq~~l~lIPH------------------------------ 398 (677)
T KOG1915|consen 366 -----------------YLWINYALYEELEAEDVERTRQVYQACLDLIPH------------------------------ 398 (677)
T ss_pred -----------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc------------------------------
Confidence 22333332 234568889999999998874221
Q ss_pred hccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Q 001414 505 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584 (1082)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p 584 (1082)
..-..+.+|...|.....+.+...|..++-.++..+|.+ ...-....+-.+.++++....+|++.+..+|
T Consensus 399 ---------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 399 ---------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred ---------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 111356788888888889999999999999999999984 4444555667888999999999999999999
Q ss_pred CChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhh
Q 001414 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664 (1082)
Q Consensus 585 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 664 (1082)
.+..+|..+|.+-..+|+++.|..+|.-+++...- +..-++.-+ |... ..+.|.+++|..+|++.|..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpellwka---YIdF--------Ei~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELLWKA---YIDF--------EIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHH---hhhh--------hhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988875432 333332222 2221 11237788888888888877
Q ss_pred cCCCHHHHHHHH
Q 001414 665 HTSNLYAANGAG 676 (1082)
Q Consensus 665 ~p~~~~a~~~la 676 (1082)
.+... ++...|
T Consensus 537 t~h~k-vWisFA 547 (677)
T KOG1915|consen 537 TQHVK-VWISFA 547 (677)
T ss_pred cccch-HHHhHH
Confidence 66544 443333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=214.03 Aligned_cols=274 Identities=21% Similarity=0.148 Sum_probs=222.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGL 205 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~ 205 (1082)
...+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+.. ...++..+|.
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999998854332 1356788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Q 001414 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-----MALNYLANHFFF 280 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~ 280 (1082)
+|...|+++.|+..|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+. ..+..++.++..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 9999999999999887653 244567777778
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHcCCHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~ 359 (1082)
.|++++|...+.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|+++
T Consensus 193 ~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 193 RGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred CCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHH
Confidence 888888888888877543 455667777888888888888888888887752 2332 345667777888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~ 412 (1082)
+|+..+++++...|+... +..++.++...|++++|+..|.+++...|++...
T Consensus 267 ~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 267 EGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 888888888877776543 3777888888888888888888888877776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-19 Score=198.30 Aligned_cols=435 Identities=17% Similarity=0.137 Sum_probs=341.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1082)
+++..|-.+...+...|+|..+.+.|++++...-.....|..++.++...|.-..|+.+++..+... |+++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5677788888999999999999999999998888888999999999999999999999999999998 77766666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcc--------HHhHHHHHHHHHHHHHhCCCCHHH
Q 001414 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1082)
Q Consensus 204 g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~ 270 (1082)
..|....|.+++++.+..+++.... -.+.++..+|..|...-. .....++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 7788889999999999999998432 134567777777654321 123678999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
.++++.-|...++...|......++... ....+.+|..++.++...+++..|+.....++... +.+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhh
Confidence 9999999999999999999999999763 24556899999999999999999999999999854 444444555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~- 420 (1082)
+-...++.++|+..+...+.....-+.+-..++ .+....++..+|...+.++...- ..-
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~-----------a~~~ 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV-----------ASQL 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH-----------Hhhh
Confidence 677789999999999998887654433333333 22222223333333333332210 000
Q ss_pred hcCCHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhh
Q 001414 421 ISSDTGAALDAFKTKAGEE----VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 496 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1082)
..-..+..+..+....+.. ....+|...+..+...++.++|..++.++..
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-------------------------- 678 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-------------------------- 678 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--------------------------
Confidence 0000000111000011110 0135677788889999999999999998877
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHH--
Q 001414 497 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE-- 574 (1082)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~-- 574 (1082)
+.|..+.+++..|.++...|...+|...|..++..+|+.+.+...+|.++...|+..-|..
T Consensus 679 -----------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 679 -----------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred -----------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 575 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 575 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
.+..+++++|.++++|+.+|.++.+.|+..+|..+|..++++.+.
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999998765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-19 Score=189.33 Aligned_cols=438 Identities=17% Similarity=0.131 Sum_probs=306.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001414 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1082)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1082)
..|...+..|+|+.|+.+|..++. .+|.+...|.+...+|..+|+|++|+.--.+.++++|+-+..|..+|..+.-+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~---l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIM---LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHc---cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 456677788888888888888887 55667777888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 001414 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDA 468 (1082)
Q Consensus 390 g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 468 (1082)
|+|++|+..|.+.++.+|++...+..++.++ .-++. +...+. .+.++..+...-... --.+.+.......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~-~~~~~~-------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYA-ADQLFT-------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHH-hhhhcc-------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 8888888888888888888888888887766 11111 111111 122222221110000 0011111111122
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCC---------CCcCCCC------------chHHHHHHHHH
Q 001414 469 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG---------NHVELPW------------NKVTVLFNLAR 527 (1082)
Q Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~------------~~~~~~~~la~ 527 (1082)
+..+|..-...- ....+-...+.+..-....+....... ......| ......-.+|.
T Consensus 155 ~~~~p~~l~~~l--~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 155 IQKNPTSLKLYL--NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred hhcCcHhhhccc--ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 221111000000 000000000000000000000000000 0000000 12334567899
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCh-------HHHHHhhhhhhcc
Q 001414 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKN 600 (1082)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~lg~~~~~~ 600 (1082)
......++..|++.|..++.++ .+...+...+.+++..|.+.+.+.....+++...... .+...+|..|.+.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999 8888899999999999999999988888777654322 2444577788889
Q ss_pred cchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001414 601 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680 (1082)
Q Consensus 601 g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 680 (1082)
++++.|+.+|.+++...-. .++ .-.. +..+++........-.+|.-......-|..++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt---------~~~-ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT---------PDL-LSKL------------KEAEKALKEAERKAYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC---------HHH-HHHH------------HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 9999999999998765432 111 2222 66788888888888888887666667799999
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccH
Q 001414 681 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 760 (1082)
Q Consensus 681 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~ 760 (1082)
..|+|..|+..|.+++...| +++..|.|.|-||.++|++..|+.-.+.|++. +|+....|..-|.+++.+.+|
T Consensus 370 k~gdy~~Av~~YteAIkr~P-----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDP-----EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred hccCHHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 88999999999999999999999999999998 788899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 001414 761 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 791 (1082)
Q Consensus 761 ~eA~~~l~~al~~~p~~~~~~~nla~~~~~~ 791 (1082)
++|...|.++++++|++..+.-.+..+++.+
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999988887777775543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-17 Score=181.25 Aligned_cols=495 Identities=15% Similarity=0.147 Sum_probs=337.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001414 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
-.+++..+.-++..++|...++..+.+++..|.. +......|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH-geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEH-GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc-chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 3466777777889999999999999999999999 788899999999999999999999999999999999999999999
Q ss_pred HHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001414 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1082)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1082)
....+ |.+|+.+|..|+.+.|+|..++..++.+..+.++++.....-...++. .|..-..|+..+.+++-.|++
T Consensus 86 R~dK~---Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 86 RSDKK---YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhhh---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHH
Confidence 99988 999999999999999999999999999999999999888777777754 366678899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001414 322 EKAGLYYMASVKEINKPHEF-----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (1082)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (1082)
..|....+...+.....+.. ..+.....+++...|.+++|.+.+...-..--+........+.++.+++++++|.
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 99999999888754322222 2345566778889999999988887655444445567778899999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcch
Q 001414 397 ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAAL-DAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQ-SFKDALGDGI 473 (1082)
Q Consensus 397 ~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al-~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~ 473 (1082)
..|...+..+|++...+..+-.++ ...+..+++ ..|...............++.....-.++..... ++...+..+
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg- 318 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG- 318 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC-
Confidence 999999999999999888887776 344555555 4454433333333333333332222223322222 222222211
Q ss_pred hhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh-
Q 001414 474 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY- 552 (1082)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~- 552 (1082)
...+|..+.... ..|..+.+.-.++..|...=............- ..|..
T Consensus 319 ------------------------~p~vf~dl~SLy----k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~-~E~Ptt 369 (700)
T KOG1156|consen 319 ------------------------VPSVFKDLRSLY----KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK-QEPPTT 369 (700)
T ss_pred ------------------------CCchhhhhHHHH----hchhHhHHHHHHHHHHHhhcccccCCCcccccc-cCCchH
Confidence 111111111100 122222233333333322111110000000000 11222
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhH
Q 001414 553 -VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631 (1082)
Q Consensus 553 -~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~ 631 (1082)
..+++.++.-+...|+++.|..+++.++...|.-++.+..-+.++...|+++.|...+..+.++... |.+...--++.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKY 448 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHH
Confidence 3455667777888899999999999999988988888888888888888888888888888776544 44433333332
Q ss_pred HHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHH
Q 001414 632 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 711 (1082)
Q Consensus 632 ~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 711 (1082)
.+.+ +..++|.+...+..+. |. .|...+. +..-+|
T Consensus 449 -mLrA------------n~i~eA~~~~skFTr~------------------~~--~~~~~L~------------~mqcmW 483 (700)
T KOG1156|consen 449 -MLRA------------NEIEEAEEVLSKFTRE------------------GF--GAVNNLA------------EMQCMW 483 (700)
T ss_pred -HHHc------------cccHHHHHHHHHhhhc------------------cc--chhhhHH------------HhhhHH
Confidence 2222 4444444443322211 11 1111111 222344
Q ss_pred HH--HHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001414 712 IN--LAHVYFAQGNFALAMKMYQNCLRKFY 739 (1082)
Q Consensus 712 ~~--la~~~~~~g~~~~Ai~~~~~al~~~~ 739 (1082)
+. -|..|.++|++..|++-|..+-+.|.
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44 47888888888888888877777653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-20 Score=184.93 Aligned_cols=331 Identities=18% Similarity=0.224 Sum_probs=275.9
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001414 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1082)
Q Consensus 36 e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1082)
.++.+.-.+.++..++..|++.+|+..+-.|++.++.. ..+++..|.+|+.+|+.. -|+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk-----------~al~ 93 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSK-----------AALQ 93 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCc-----------cchh
Confidence 34556678899999999999999999999998876643 347788899999999887 7999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcCChHH
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PA------------LLGQACVEFNRGRYSD 180 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a------------~~~la~~~~~~g~~~~ 180 (1082)
-+.+++++.|+...+.+.+|.+++++|.+++|..-|+.++..+|++. .+ +......++..|++..
T Consensus 94 Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 94 DLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh
Confidence 99999999999999999999999999999999999999999999652 12 2334455667899999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHH
Q 001414 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1082)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1082)
|+.+...++...|-+ ...+...+.||...|....|+..+..+-++..++.+.++.++.+++..|+ ...++...+.+
T Consensus 174 ai~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iREC 249 (504)
T KOG0624|consen 174 AIEMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIREC 249 (504)
T ss_pred HHHHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHH
Confidence 999999999999998 78899999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC
Q 001414 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1082)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1082)
++++|+.-..+-.. ....+..+.++ -+......++|.+++...++.++ ..|.
T Consensus 250 LKldpdHK~Cf~~Y-------KklkKv~K~le------------------s~e~~ie~~~~t~cle~ge~vlk---~ep~ 301 (504)
T KOG0624|consen 250 LKLDPDHKLCFPFY-------KKLKKVVKSLE------------------SAEQAIEEKHWTECLEAGEKVLK---NEPE 301 (504)
T ss_pred HccCcchhhHHHHH-------HHHHHHHHHHH------------------HHHHHHhhhhHHHHHHHHHHHHh---cCCc
Confidence 99999876433221 11112222222 12344567899999999999998 4444
Q ss_pred C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 341 F----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 341 ~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 416 (1082)
. ...+-.+..|+...|++.+|+..+..++...|+++.++...+.+|.-...|+.|+..|+++.+.++++..+...+
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 2 233455778899999999999999999999999999999999999999999999999999999999998776665
Q ss_pred HH
Q 001414 417 GE 418 (1082)
Q Consensus 417 a~ 418 (1082)
-.
T Consensus 382 e~ 383 (504)
T KOG0624|consen 382 ER 383 (504)
T ss_pred HH
Confidence 43
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-18 Score=175.42 Aligned_cols=409 Identities=14% Similarity=0.103 Sum_probs=325.2
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001414 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1082)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1082)
.+.+....+..+.+|...++-+.|+........ ....+.....++..+..-++-.++.-.|..++...| -++-
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~----t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp---~aL~ 165 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP----TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP---MALQ 165 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCc----cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc---hHHH
Confidence 456677788899999999999999988876653 223334445566666666666677767777766544 3333
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHhcCCHHHHHHHH--H-hhcCCCCCHHHHHHHHHHHH
Q 001414 381 ALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQAFID---LGELLISSDTGAALDAF--K-TKAGEEVPIEVLNNIGVIHF 453 (1082)
Q Consensus 381 ~la~~~~-~~g~~~~A~~~l~kal~~~p~~~~~~~~---la~~~~~~~~~~Al~~l--~-~~~~~~~~~~~~~~la~~~~ 453 (1082)
.++.++. ..+-++.+- .-..++...|.++..|.. ++.++ .++...|...+ - .....+.+..++..+|.+++
T Consensus 166 ~i~~ll~l~v~g~e~~S-~~m~~~~~~~~~dwls~wika~Aq~~-~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 166 VIEALLELGVNGNEINS-LVMHAATVPDHFDWLSKWIKALAQMF-NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY 243 (564)
T ss_pred HHHHHHHHhhcchhhhh-hhhhheecCCCccHHHHHHHHHHHHH-hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh
Confidence 3322221 111222221 112234455655544433 33333 33333333332 2 26667788899999999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001414 454 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533 (1082)
Q Consensus 454 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 533 (1082)
..|++.+|+..|+++.. .+|...+..-..|.++...|
T Consensus 244 ~~Gdn~~a~~~Fe~~~~-------------------------------------------~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLC-------------------------------------------ANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred hhcCchHHHHHHHHHhh-------------------------------------------CChhhhhhHHHHHHHHHhcc
Confidence 99999999999999887 67888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 534 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 534 ~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
+++.-..+....+........-|+.-+..++..+++..|+.+..+++..+|.+..++...|.++...|+.++|+-.|+.+
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 99999999999888887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHhc-CCchHHHHH
Q 001414 614 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEK-GQFDVSKDL 691 (1082)
Q Consensus 614 l~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la-~~~~~~-~~~~~A~~~ 691 (1082)
..+.|. +..++-.|..+ |+.. |.+.+|.-.-+.+++..|.+..++..+| .++... .--++|..+
T Consensus 361 q~Lap~-rL~~Y~GL~hs-YLA~------------~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 361 QMLAPY-RLEIYRGLFHS-YLAQ------------KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred Hhcchh-hHHHHHHHHHH-HHhh------------chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999988 88889899999 9999 9999999999999999999999998886 555543 456789999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 001414 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 771 (1082)
Q Consensus 692 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al 771 (1082)
+++.+...| ....+-..+|.++...|.+..+|.++++.+.. -+|......||.++...+.+++|+..|..|+
T Consensus 427 ~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 427 AEKSLKINP-----IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHhhhccCC-----ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999998 67788889999999999999999999999997 4677889999999999999999999999999
Q ss_pred hhCCCCcchhhH
Q 001414 772 HLAPSNYTLRFD 783 (1082)
Q Consensus 772 ~~~p~~~~~~~n 783 (1082)
.++|++....-.
T Consensus 499 r~dP~~~~sl~G 510 (564)
T KOG1174|consen 499 RQDPKSKRTLRG 510 (564)
T ss_pred hcCccchHHHHH
Confidence 999998554443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-17 Score=170.17 Aligned_cols=286 Identities=17% Similarity=0.113 Sum_probs=214.9
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 337 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 416 (1082)
.-++++..+..+|.+++..|++.+|+..|+++.-++|.+...+-..|.++.+.|+++.-..+....+........-|+.-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 44666677777788888888888888888888777787777777777777777777777777666666665555555555
Q ss_pred HHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001414 417 GELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 494 (1082)
Q Consensus 417 a~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1082)
+.++ ..+++..|+.+..+ +...+.....+...|.++...|+.++|+-.|+.+..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------------ 362 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM------------------------ 362 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh------------------------
Confidence 5544 67777777777776 455556667777778888888888888888888876
Q ss_pred hhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHH-HHHH-HhcCHHHH
Q 001414 495 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAK-ARNNLQLS 572 (1082)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la-~~~~-~~g~~~eA 572 (1082)
..|....+|-.+..+|...|.+.+|...-+.++...|.++.++..+| .++. .-.--++|
T Consensus 363 -------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 363 -------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred -------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH
Confidence 55667778888888888888888888888888888888888877776 3332 23345678
Q ss_pred HHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHH
Q 001414 573 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 652 (1082)
Q Consensus 573 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~ 652 (1082)
.+++++++.+.|....+...++.++...|.+..++..+++.+...+ |...+..||++ +... +.+.
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~-~~A~------------Ne~Q 488 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDI-MRAQ------------NEPQ 488 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHH-HHHh------------hhHH
Confidence 8888888888888888888888888888888888888888887665 45666778888 7777 7888
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001414 653 KAKELYTRVIVQHTSNLYAANGAGVVLA 680 (1082)
Q Consensus 653 ~A~~~~~~~l~~~p~~~~a~~~la~~~~ 680 (1082)
+|+..|..+|+++|++-.+.-++-.+-.
T Consensus 489 ~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 8888888888888888777766544433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-15 Score=160.17 Aligned_cols=467 Identities=13% Similarity=0.163 Sum_probs=375.4
Q ss_pred HHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 90 GVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1082)
Q Consensus 90 a~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1082)
...|.+.|+.+. -++++..|...|++|+..+..+...|+..+.+-++......|..++++++..-|.--..|+...
T Consensus 73 ~~~WikYaqwEe----sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 73 MQVWIKYAQWEE----SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 445777788773 4678889999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHh
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1082)
.+--..|+...|.++|.+.+...|+. .+|......-.+.+..+.|..+|++.+-..| ....|+..+.+-...|+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~--- 222 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGN--- 222 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCc---
Confidence 88899999999999999999999986 5678888888889999999999999998887 57789999999999998
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchH-HHHHHHHHHHHcCC---HH
Q 001414 250 IRKGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-SYYNLARSYHSKGD---YE 322 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~la~~~~~~g~---~~ 322 (1082)
...+..+|.+++....++. ......|..-..+..++.|.-+|.-++...+.+ .+. .+-.+...--+-|+ .+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999998766543 445556666677888999999999998654322 222 22222222223344 34
Q ss_pred HHHH-----HHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHH---H
Q 001414 323 KAGL-----YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-------TLKALGHIY---V 387 (1082)
Q Consensus 323 ~A~~-----~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~---~ 387 (1082)
.++. .|+..+. .+|.+..+|+....+--..|+.+.-..+|++++..-|...+ +|..+-.++ .
T Consensus 301 d~Iv~KRk~qYE~~v~---~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVS---KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHhhhhhhHHHHHHH---hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3455555 78888899999999999999999999999999998776432 222222222 2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001414 388 QLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAH 462 (1082)
Q Consensus 388 ~~g~~~~A~~~l~kal~~~p~~----~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 462 (1082)
...+.+.+..+|+.++.+-|.. ...|+..+... .+.+...|..++-...+..+...++.....+-.++++++...
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 4478999999999999998864 56777777776 888999999999998888888888888888889999999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHH
Q 001414 463 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 542 (1082)
Q Consensus 463 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 542 (1082)
.+|++.+. ..|.+..+|...|.+-..+|+.+.|..+|
T Consensus 458 kLYEkfle-------------------------------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 458 KLYEKFLE-------------------------------------------FSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHHHHHh-------------------------------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999988 77889999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhh-----ccc-----------chH
Q 001414 543 RLILFKYQDYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL-----KND-----------DWV 604 (1082)
Q Consensus 543 ~~~l~~~p~~~~a~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-----~~g-----------~~~ 604 (1082)
.-+++...-+..-++..+ ..-...|.++.|..+|+.++...+... +|...+.+-. ..+ ...
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 999987654444333333 445678999999999999999987655 7777777655 344 466
Q ss_pred HHHHHHHHhhh
Q 001414 605 KAKETFRAASD 615 (1082)
Q Consensus 605 ~A~~~~~~al~ 615 (1082)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-14 Score=152.75 Aligned_cols=594 Identities=13% Similarity=0.141 Sum_probs=330.7
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--c------CChHHHHHHHHHH
Q 001414 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN--R------GRYSDSLEFYKRA 188 (1082)
Q Consensus 117 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~--~------g~~~~Al~~~~~a 188 (1082)
|+.-+-.+|.+...|......... .-..+-.-+|+++++.-|.+...|+..-..-.. . .-|..--.+|+++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 334445566666666554333222 223444556777777777776666543321111 1 1244455566666
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC
Q 001414 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1082)
+..-... +.+|+.....+..+|+...-+..|.++|..-|- +...|-....+....+- ..-++..|++.++..|.
T Consensus 95 lv~mHkm-pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l---Pets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 95 LVFMHKM-PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL---PETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC---hHHHHHHHHHHHhcCHH
Confidence 6655555 566777777777777777777777777776663 33445444444444444 56777777777777776
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----CCCCCchHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhhCCCC
Q 001414 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAG---LYYMASVKEINKPH 339 (1082)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~~ 339 (1082)
.. ......+...++.++|.+.+...+... ...+.+-..|..+.....+.-+.-..+ ..+...+..+ ..
T Consensus 171 ~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tD 245 (835)
T KOG2047|consen 171 AR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TD 245 (835)
T ss_pred HH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cH
Confidence 53 344456666777777777777666321 122333344444444443332222211 1222222211 12
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHH-----HHHHcC-------------CHHHHHHH
Q 001414 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKALGH-----IYVQLG-------------QIEKAQEL 398 (1082)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~-----~~~~~g-------------~~~~A~~~ 398 (1082)
.....|..||..|++.|.+++|...|++++..-- +...++-..+. +-.+++ +.+-....
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 2334566777777777777777777777765421 11111111100 000000 11112222
Q ss_pred HHHHH------------HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 399 LRKAA------------KIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 466 (1082)
Q Consensus 399 l~kal------------~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 466 (1082)
|+.++ ..+|++...|..... +..|+..+-+..|.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~----------------------------------l~e~~~~~~i~tyt 371 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK----------------------------------LYEGNAAEQINTYT 371 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh----------------------------------hhcCChHHHHHHHH
Confidence 22222 223333333333322 24455555555555
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001414 467 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 546 (1082)
Q Consensus 467 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 546 (1082)
+|+..-.. ......-...+..+|..|...|+.+.|..+|+++.
T Consensus 372 eAv~~vdP-------------------------------------~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 372 EAVKTVDP-------------------------------------KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHccCc-------------------------------------ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 55552100 00111223455556666666666666666666665
Q ss_pred HhCC----ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC------------------CChHHHHHhhhhhhcccchH
Q 001414 547 FKYQ----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------------------KYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 547 ~~~p----~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p------------------~~~~~~~~lg~~~~~~g~~~ 604 (1082)
...- +-...|...|.+-....+++.|+.+++.+...-. .+..+|..++.+....|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5331 1144555555555556666666666555543211 13447777777777788888
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHH--
Q 001414 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLA-- 680 (1082)
Q Consensus 605 ~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~-- 680 (1082)
.....|.+++.+.-. .+....+.+.. +-.. ..++++.+.|++.+.+.| .-...|+..-..+.
T Consensus 495 stk~vYdriidLria-TPqii~NyAmf-LEeh------------~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMF-LEEH------------KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHH-HHhh------------HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 888888888775433 44444445544 4444 677888888888777763 33334433322222
Q ss_pred -hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---
Q 001414 681 -EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE--- 756 (1082)
Q Consensus 681 -~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~--- 756 (1082)
....++.|..+|+++++..|.. ..-.+|+..+..--.-|--..|+.+|+++-.. ....-.+.+-.+|.+
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~---~aKtiyLlYA~lEEe~GLar~amsiyerat~~----v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPE---HAKTIYLLYAKLEEEHGLARHAMSIYERATSA----VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHH
Confidence 2347888888999998877621 22334555677777778888888888887664 222222222233332
Q ss_pred --hccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001414 757 --AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLH 830 (1082)
Q Consensus 757 --~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~~~~ 830 (1082)
-|- ...+.+|++|++.-|++...-+.|-++ +++..+++.+.|+.+|..-++.-+|.
T Consensus 634 e~yGv-~~TR~iYekaIe~Lp~~~~r~mclrFA-----------------dlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 634 EIYGV-PRTREIYEKAIESLPDSKAREMCLRFA-----------------DLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred HHhCC-cccHHHHHHHHHhCChHHHHHHHHHHH-----------------HHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 232 446788999999999987776666554 79999999999999999999887663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-14 Score=152.50 Aligned_cols=659 Identities=13% Similarity=0.107 Sum_probs=414.2
Q ss_pred HHhcCCChhHHHHHHHHHHHcCCHH-HHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhh-hhhhhHHHH
Q 001414 33 LKAEQAPLDLWLIIAREYFKQGKVE-QFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET-KQREKEEHF 110 (1082)
Q Consensus 33 l~~e~~~~~~~~~~a~~y~~~g~~~-~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~-~~~~k~~~~ 110 (1082)
|.-.|-++..|+.-.. +++|... +-..++++++..-+ .+ +.|..-|++...... ..-.-+..|
T Consensus 20 ilRnp~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp-----~s--------ykiW~~YL~~R~~~vk~~~~T~~~~ 84 (835)
T KOG2047|consen 20 ILRNPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELP-----GS--------YKIWYDYLKARRAQVKHLCPTDPAY 84 (835)
T ss_pred HHcCchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCC-----Cc--------hHHHHHHHHHHHHHhhccCCCChHH
Confidence 3446777888987543 3444444 34456788766522 21 234444553322211 011124567
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001414 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1082)
Q Consensus 111 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1082)
..--.+|++++-.-..-|..|+.....+..+|+...-...|+++|..-|- +...|-.........+-..-++..|++.
T Consensus 85 ~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 77888888888766677889999999999999999999999999998873 3445555555666778888999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHH
Q 001414 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1082)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 261 (1082)
|+..|.. .-.....+...++.++|...|...+.. .|.+...|..+..+..+..+...--..-..+...+
T Consensus 165 Lk~~P~~----~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKVAPEA----REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HhcCHHH----HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 9999987 334556778899999999999998754 35566778888887776654222223334566666
Q ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhCCC
Q 001414 262 EIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKP 338 (1082)
Q Consensus 262 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~ 338 (1082)
...++. ...|..||.+|.+.|.+++|..+|+.+++..-...+...++-..+. |++....+.- +.......
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~-------FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ-------FEESCVAAKMELADEESGNE 313 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH-------HHHHHHHHHHhhhhhcccCh
Confidence 677664 4788899999999999999999999998754332222222222111 1111111000 10011111
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHH
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR-----DAQA 412 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~-~~p~-----~~~~ 412 (1082)
.+....-..++..-........- .=.-++..+|++...|.....++ .|+..+-+..|..++. .+|. ....
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTL 389 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhH
Confidence 11111111122111111111100 01123456777777777665554 5777778888877765 3443 2467
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhh
Q 001414 413 FIDLGELL-ISSDTGAALDAFKTKAG-----EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 486 (1082)
Q Consensus 413 ~~~la~~~-~~~~~~~Al~~l~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 486 (1082)
|..++.+| ..|+.+.|..++.+... ...-..+|...|..-....+++.|+.+.+.+........
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---------- 459 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---------- 459 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----------
Confidence 88888888 88888888888888222 222357888888888899999999999998876422100
Q ss_pred hhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 001414 487 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 566 (1082)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 566 (1082)
+.+|+....... .--....+|..++.+....|-++.....|.+++.+.--.+....+.|..+...
T Consensus 460 ------------~~~yd~~~pvQ~---rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 460 ------------LEYYDNSEPVQA---RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred ------------hhhhcCCCcHHH---HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 011110000000 00124567777888888888888888899998888777788888888888888
Q ss_pred cCHHHHHHHHHHHHHHc--CCChHHHHHhhhhhhc---ccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhc
Q 001414 567 NNLQLSIELVNEALKVN--GKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641 (1082)
Q Consensus 567 g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~ 641 (1082)
.-++++.+.|++.+.+. |.-.++|..+-..+.+ -...+.|...|+++++..|+.....++ |. |... .
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy-Ll---YA~l--E-- 596 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY-LL---YAKL--E-- 596 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH---HHHH--H--
Confidence 88888988888888877 4444555544333332 235788888888888876653333222 11 2221 1
Q ss_pred cCchHHhhHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001414 642 RAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 719 (1082)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 719 (1082)
.+-|--..|+.+|+++-..-+ .+....+++-+.-+ ..=-......+|+++++..|++ ......+..+..-.
T Consensus 597 ----Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 597 ----EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLET 669 (835)
T ss_pred ----HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhh
Confidence 112777888888888765433 33333333322111 1122445677888888888754 33445566778888
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHH
Q 001414 720 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 761 (1082)
Q Consensus 720 ~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~ 761 (1082)
..|..+.|..+|.-+.+..+...++..|..--..-.+.|+-+
T Consensus 670 klGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 888888888888888887655555777776666666777733
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=197.82 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001414 446 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 525 (1082)
Q Consensus 446 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 525 (1082)
..++.+++..|++++|+..+.+.+... .+|.++..+..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 466999999999999999997665421 146788899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHH
Q 001414 526 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 605 (1082)
Q Consensus 526 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 605 (1082)
|.+....++++.|+..|++++..++.++..+.+++.+ ...+++++|+.++.++.+..+ ++..+..+..++...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999988 799999999999999988664 57777888888999999999
Q ss_pred HHHHHHHhhhcC-CCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 001414 606 AKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 684 (1082)
Q Consensus 606 A~~~~~~al~~~-~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~ 684 (1082)
+...+.++.... ...++..+..+|.+ +... |+.++|+.+|+++++.+|+++.+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 999999977643 23477888899999 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHH
Q 001414 685 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 764 (1082)
Q Consensus 685 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~ 764 (1082)
.+++..++.......| .++.+|..+|.+|..+|++++|+.+|+++++. .|.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 67889999999999999999999999999997 7889999999999999999999999
Q ss_pred HHHHHHHhh
Q 001414 765 KSLLRAIHL 773 (1082)
Q Consensus 765 ~~l~~al~~ 773 (1082)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988753
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=190.45 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCH
Confidence 466666666666666666666666666655432 23566677777777777766 55666666666666777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
++|+..|++++.++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777777766666666766666666 66677777777777776665555555556666667667766666
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
++... .|..+..+..+|.++...|++++|...+.++.. ..|....+...++..|...|+ .|...++.+++..-
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 65432 244456667777777777777777777776654 455555666667777776663 66666666555432
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
..+.-...+..+|.-.|+.+.+... +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222223366666677777666665 555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-18 Score=168.48 Aligned_cols=251 Identities=16% Similarity=0.127 Sum_probs=229.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhh
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 597 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 597 (1082)
+......+|.||..+|.+.+|...++..++..|. ++.+..|+.+|....++..|+..|...+...|.+...+..++.++
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 3444567999999999999999999999998876 899999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001414 598 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 677 (1082)
Q Consensus 598 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 677 (1082)
..++++++|.++|+.+++..|. +..+...++.- ||.. ++.+-|+.+|+++|+..-.++..+.++|.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~-yfY~------------~~PE~AlryYRRiLqmG~~speLf~NigL 366 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVG-YFYD------------NNPEMALRYYRRILQMGAQSPELFCNIGL 366 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeec-cccC------------CChHHHHHHHHHHHHhcCCChHHHhhHHH
Confidence 9999999999999999998876 66666666666 7777 89999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 757 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~ 757 (1082)
++...++++-++..|++++...... ..-.++|+|+|++....|++..|...|+-||.. ++.+.+++.+||..-.+.
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~--~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQP--GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCc--chhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhc
Confidence 9999999999999999999876311 145789999999999999999999999999986 677899999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 758 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 758 g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
|+...|+.++..|..+.|.-....||++++
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred CchHHHHHHHHHhhhhCccccccccceeEE
Confidence 999999999999999999999999998875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-16 Score=178.49 Aligned_cols=301 Identities=15% Similarity=0.052 Sum_probs=214.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
.+..|.+.+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..+|.++.+..|+....+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 36678888999999999999999999999888888999999999999999999999999988887445666679999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1082)
|+++.|...++++++..|+++.++..++.++...|+ ++.|...+.+..+..+.++.... .....+...+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999988887554443322 11111122333333
Q ss_pred HHHHHHHHHhccC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHHcCCHHHHHH
Q 001414 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSALT 363 (1082)
Q Consensus 287 A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~ 363 (1082)
+...+..+....+ ..+..+..+..++..+...|++++|...+.++++. .|+.... ........+..++...++.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 3334444443221 12245667777777777777777777777777763 2333221 1222223334466677777
Q ss_pred HHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 001414 364 NFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEE 439 (1082)
Q Consensus 364 ~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~ 439 (1082)
.+++.++..|+++ ..+..+|.++.+.|++++|..+|+ .++...|++
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~------------------------------ 370 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA------------------------------ 370 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH------------------------------
Confidence 7777777777777 666677777777777777777777 455555543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 440 VPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 440 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
..+..+|.++...|+.++|..+|++++.
T Consensus 371 ---~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 371 ---NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344667777788888888888888765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=189.80 Aligned_cols=257 Identities=24% Similarity=0.308 Sum_probs=89.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+.+.+|+++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666664443332 333 45555666666666666666666666666666655555555555 444
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001414 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1082)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1082)
++ +.+|+.++.++++..+ ++..+..++.++...++++.+..++..+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44 6666666666655443 34445555556666666666666666655322 2234556677777777777777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
+..|++++. ..|++..+...++.+++..|+++++...+.......|.++..+..+|.+|..+|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 777777776 45666666777777777777777777777666666666666777777777777777777777777777
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHH
Q 001414 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFK 433 (1082)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~Al~~l~ 433 (1082)
.+|+++..+..++.++ ..|+.++|..++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 7777766666655555 5555555544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=165.28 Aligned_cols=274 Identities=17% Similarity=0.189 Sum_probs=243.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001414 136 QLLLAKGEVEQASSAFKIVLEAD---RDN-------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1082)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~~-------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~ 205 (1082)
.+++..++...|-......+... |.. ...-..+|.||++.|.+.+|.+.++..+...|.. +.+..++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 45666777777776666655442 211 1222578999999999999999999999988874 77899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001414 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1082)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1082)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++.-|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001414 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1082)
Q Consensus 286 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1082)
-|..+|.++++.+ ...++.+.++|.|++..++++-++..|++++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMG---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhc---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 9999999999876 4556899999999999999999999999999866556667889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
.-++..+|++.+++.+||.+-.+.|+...|..++..+....|.-.+..++++
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999999999999998776665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=189.04 Aligned_cols=264 Identities=15% Similarity=0.070 Sum_probs=206.2
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 001414 157 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 222 (1082)
Q Consensus 157 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~ 222 (1082)
..|.+..+ ++..|...+.. +.+.+|+.+|++++.++|++ +.++..+|.|+..++ ++.+|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44455443 23444433332 45689999999999999998 777888888877443 37899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 001414 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1082)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1082)
+++++|+++.++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999999664 5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001414 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1082)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1082)
..+..++.++.+++..|++++|+..+.+++.. .+|..+.++..+|.++...|++++|...+.++....|....++..+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 45555666677788889999999999998863 2466777788899999999999999999999888888888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001414 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (1082)
Q Consensus 383 a~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~ 431 (1082)
+.+|...|+ .|...++++++..-........+..++ ..|+.+.+..+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 988888884 777777776654322222222255566 66666666655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-15 Score=150.53 Aligned_cols=378 Identities=15% Similarity=0.123 Sum_probs=199.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHH
Q 001414 137 LLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1082)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~ 215 (1082)
-++...+|.-|+.+++..+..+... ...-+++|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3455566666666666655443322 2444556666666666666666666655532 2235566666666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1082)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 295 (1082)
|...-.++ |+++-....+-.+..+.++ -.+-..+...+-
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklnd-------------------------------------Ek~~~~fh~~Lq 148 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLND-------------------------------------EKRILTFHSSLQ 148 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHh
Confidence 66555443 4444433333333334443 111111111111
Q ss_pred hccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001414 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1082)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1082)
+..+-...++.+++..-.|.+|+..|.+++. .+|.....-..++.||+++.-|+-+...+.-.+...|+.
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 0113344566666666677778888877776 666666666777888888888888888888778888887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 001414 376 CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHF 453 (1082)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~ 453 (1082)
+-+...++..+.+.=+-..|..-........ ...+..-..+-.-+ .-.+-+.|++++-.. ....|++..++...|.
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L--~~~IPEARlNL~iYyL 296 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL--MKHIPEARLNLIIYYL 296 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH--HhhChHhhhhheeeec
Confidence 7777777776666533333333333332211 11111111110001 112223344443331 1223455666666666
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001414 454 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 533 (1082)
Q Consensus 454 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 533 (1082)
.+++..+|+.+.+. ..|..+.-+...|.++...|
T Consensus 297 ~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 297 NQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred ccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHHHHHHhh
Confidence 66776666666543 34555555555566655555
Q ss_pred ChHHHHHHHHHHHH---hC------CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchH
Q 001414 534 DTVAASVLYRLILF---KY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 534 ~~~~A~~~~~~~l~---~~------p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 604 (1082)
+--...+.++-+-. .- -+.....-..+..++-..++++.+.+++..-...-++....++++..+...|++.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChH
Confidence 43333333222211 10 1112233344455555556666666666665555555566666666666666666
Q ss_pred HHHHHHHHhh
Q 001414 605 KAKETFRAAS 614 (1082)
Q Consensus 605 ~A~~~~~~al 614 (1082)
+|.+.|-++.
T Consensus 411 eaEelf~~is 420 (557)
T KOG3785|consen 411 EAEELFIRIS 420 (557)
T ss_pred HHHHHHhhhc
Confidence 6666665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-15 Score=171.64 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+|+|..|...+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34555999999999999998888889999999999999999999999999999885 56777899999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHhccHHhHHHHHHHHHHHH
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAF 261 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~la~~~~~~~~~~~~~~A~~~~~~al 261 (1082)
+.++...|++ +.++..++.++...|+++.|...+.+.++..+.++..+. ....-.+..+. ...+...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 688999999999999999999999999987554444332 11111122332 455566788888
Q ss_pred HhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 001414 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1082)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1082)
...| +++.++..++..+...|+++.|...+.+++...+.++... ............++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-hHHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 5899999999999999999999999999997654332211 012333334456889999999999998 5
Q ss_pred CCCCh--hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.|+++ ..+..+|.+++..|++++|..+|+ .+++..|+... +..+|.++.+.|+.++|..++++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67777 778899999999999999999999 57778887655 559999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-14 Score=155.36 Aligned_cols=460 Identities=13% Similarity=0.081 Sum_probs=274.6
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCC
Q 001414 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1082)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1082)
+...|+|++|.+...+++... |....++.....++.+.+.|++|+.....-.. ........+..+.|.++++.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHHccc
Confidence 334444555555555554332 34445555555566666666666633332111 01111112566777777777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 001414 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAG 437 (1082)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~ 437 (1082)
.++|+.++. ..++.+..++...|.+++++|+|++|+.+|+.+++.+.++.+.......+-. +-...+- .++....
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-~a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-AAALQVQ-LLQSVPE 169 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHhhhHH-HHHhccC
Confidence 777777777 2344555677777777777777777777777777766555444333322210 0000110 2222222
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCC
Q 001414 438 -EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 516 (1082)
Q Consensus 438 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 516 (1082)
.....+.++|.++++...|+|.+|++.+++++..+...-..++.. .-+...
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~----------------------------eEeie~ 221 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN----------------------------EEEIEE 221 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc----------------------------hhhHHH
Confidence 234668899999999999999999999999977543111111100 000222
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHH----HHHHHHHHHHhcCHH-HHHHHHHHHHHHcCC------
Q 001414 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----YLRLAAIAKARNNLQ-LSIELVNEALKVNGK------ 585 (1082)
Q Consensus 517 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a----~~~la~~~~~~g~~~-eA~~~~~~al~~~p~------ 585 (1082)
....+...++.++..+|+..+|..+|..++..+|.+... -++|..+-....-++ .++..++......++
T Consensus 222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 345678889999999999999999999999998876433 223322221111112 122222222211111
Q ss_pred ----ChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHH
Q 001414 586 ----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 661 (1082)
Q Consensus 586 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 661 (1082)
...++.+.+.+.+..+...++.+.....-...|..-..++ +-.. +... ...+.+|.+++...
T Consensus 302 s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EKKHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HHHHhhhHHHHHHH
Confidence 1224555666666666666666655543333333211121 1111 1111 14688999999999
Q ss_pred HhhcCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 662 IVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 662 l~~~p~~-~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
...+|.+ ..+...++.+.+.+|++..|+.++...++....+ .....|.+--.+-..|...+.-+.|...+..++.-+
T Consensus 368 ~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 368 ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 9999987 6677788999999999999999999443221100 001345565666677778887777888888888754
Q ss_pred cCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 001414 739 YYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 791 (1082)
Q Consensus 739 ~~~~~-----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~ 791 (1082)
..... ..++--++....+.|+-++|...+++.++.+|++..+.-.+..+|...
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 33222 333445666677789999999999999999999988877776665533
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-14 Score=147.85 Aligned_cols=455 Identities=15% Similarity=0.145 Sum_probs=302.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhH
Q 001414 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1082)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1082)
-+....+|..|+.+++-.+..+......+...+|.|++++|+|++|+..|.-+...+.-+...++.|+.+++-.|. +
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y 107 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---Y 107 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---H
Confidence 4567788999999888877666554346778889999999999999998888877665566777777777777766 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1082)
.+|.....+ .|++| -....+-.+.++.++-.+-. .|..
T Consensus 108 ~eA~~~~~k----a~k~p-------------------------------------L~~RLlfhlahklndEk~~~-~fh~ 145 (557)
T KOG3785|consen 108 IEAKSIAEK----APKTP-------------------------------------LCIRLLFHLAHKLNDEKRIL-TFHS 145 (557)
T ss_pred HHHHHHHhh----CCCCh-------------------------------------HHHHHHHHHHHHhCcHHHHH-HHHH
Confidence 555544332 23333 22233333445555544433 3444
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 331 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
.++ +...-.+.|+.+.+..-.|++|+.+|.+++..+|+.......++.||+++.-++-+.+.+.-.++..|+++
T Consensus 146 ~Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 146 SLQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 443 23355678899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001414 411 QAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 490 (1082)
Q Consensus 411 ~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 490 (1082)
.+....+..+ ++.=+-..|..-.+.....
T Consensus 220 iA~NLkacn~--------------------------------fRl~ngr~ae~E~k~ladN------------------- 248 (557)
T KOG3785|consen 220 IAKNLKACNL--------------------------------FRLINGRTAEDEKKELADN------------------- 248 (557)
T ss_pred HHHHHHHHHH--------------------------------hhhhccchhHHHHHHHHhc-------------------
Confidence 7665554322 1111111111111111110
Q ss_pred hhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHH
Q 001414 491 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 570 (1082)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 570 (1082)
.....+.+-+.+-.-+.-..+-+.|++.+-..+..- +++.++|+..|..+++..
T Consensus 249 -----------------------~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVq 302 (557)
T KOG3785|consen 249 -----------------------IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQ 302 (557)
T ss_pred -----------------------ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHH
Confidence 000011111111111111123355665555555443 456777777788888888
Q ss_pred HHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh---hhcCC----C-CcHHHHHHhHhHHHHHHhhhhcc
Q 001414 571 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATD----G-KDSYATLSLGNWNYFAALRNEKR 642 (1082)
Q Consensus 571 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~~----~-~d~~~~~~Lg~~~y~~~~~~~~~ 642 (1082)
+|+.+.+. ++|..|.-+...|.++...|+-....++++-+ +.+.. . ......-+++.. +|..
T Consensus 303 eA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------ 372 (557)
T KOG3785|consen 303 EAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------ 372 (557)
T ss_pred HHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------
Confidence 88777665 67888888888888877777643333333322 11111 1 011122345555 6666
Q ss_pred CchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC
Q 001414 643 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 722 (1082)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 722 (1082)
.++++.+.++..+-...-++....+++|.+....|++.+|.+.|-++..-.- .+.......||.||...|
T Consensus 373 ------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 373 ------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNK 442 (557)
T ss_pred ------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcC
Confidence 7899999998888888888777888999999999999999999987754321 133445567899999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 723 NFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 723 ~~~~Ai~~~~~al~~~~~~~~-~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
++..|..+|-+ .. .|.+ ...+..++...++.+.+--|-+.|...-.++|+.
T Consensus 443 kP~lAW~~~lk---~~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 443 KPQLAWDMMLK---TN-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred CchHHHHHHHh---cC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 99999888654 31 2333 5566677999999999999999998888888864
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-14 Score=152.66 Aligned_cols=464 Identities=13% Similarity=0.088 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+++.|++|+...++.+.+.|+++.++.....++.+.++|++|+.+.+.-....-.+. ..+..|.|.++.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHH
Confidence 356777888888888888888888888888888888888888855443322222222 2278888888888888888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1082)
+ ..++.+ ..+....|..++++|+|++|...|+..++.+.++.+.......+..... .... +.+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhccCCC
Confidence 7 334444 4467778888888888888888888887776665555443332221110 0001 222222222
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CCC---
Q 001414 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKP--- 338 (1082)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~--- 338 (1082)
. ..-+.+|+.+.++...|+|.+|++.+.++++.. ...
T Consensus 172 e------------------------------------~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~ 215 (652)
T KOG2376|consen 172 E------------------------------------DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN 215 (652)
T ss_pred c------------------------------------chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc
Confidence 2 122455666666666666666666666663210 000
Q ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---H-H-HHHHHHHHHHHhCCC
Q 001414 339 -----HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---I-E-KAQELLRKAAKIDPR 408 (1082)
Q Consensus 339 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~-~-~A~~~l~kal~~~p~ 408 (1082)
.....+...++.++...|+..+|...|..+++.+|.+.........-+..... + + .++..++......++
T Consensus 216 eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~ 295 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAE 295 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHH
Confidence 01123345566666666666666666666666665554332222211111100 0 0 111111111110000
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001414 409 DAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488 (1082)
Q Consensus 409 ~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 488 (1082)
..+..|.. .....++.+.+.+.+..+..+.+.+.....-.
T Consensus 296 ------------------~~l~~Ls~----~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~------------------ 335 (652)
T KOG2376|consen 296 ------------------FLLSKLSK----KQKQAIYRNNALLALFTNKMDQVRELSASLPG------------------ 335 (652)
T ss_pred ------------------HHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc------------------
Confidence 00000000 01112344444444444444443333222110
Q ss_pred hhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhc
Q 001414 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARN 567 (1082)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g 567 (1082)
..|..................+..|..++......+|.. ..+.+.++.+.+..|
T Consensus 336 -------------------------~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 336 -------------------------MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred -------------------------cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 122222222222222233335667777777777777766 566667777777777
Q ss_pred CHHHHHHHHHHHH--------HHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhh
Q 001414 568 NLQLSIELVNEAL--------KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 639 (1082)
Q Consensus 568 ~~~eA~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~ 639 (1082)
++..|+..+...+ ... ..|.+...+..++.+.++...|...+..
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~--------------------------- 442 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDS--------------------------- 442 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHH---------------------------
Confidence 7777777776332 111 1222333333344444444444444443
Q ss_pred hccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001414 640 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 719 (1082)
Q Consensus 640 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 719 (1082)
|+.+|.....-.+.-...+-..+.+-.+.|+-.+|...+++++...| .+.++...+...|.
T Consensus 443 --------------Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-----~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 443 --------------AIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-----NDTDLLVQLVTAYA 503 (652)
T ss_pred --------------HHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-----chHHHHHHHHHHHH
Confidence 44444333322222222233345555566888888888888888887 66778877777776
Q ss_pred HcCCHHHHHHH
Q 001414 720 AQGNFALAMKM 730 (1082)
Q Consensus 720 ~~g~~~~Ai~~ 730 (1082)
.. +.+.|..+
T Consensus 504 ~~-d~eka~~l 513 (652)
T KOG2376|consen 504 RL-DPEKAESL 513 (652)
T ss_pred hc-CHHHHHHH
Confidence 64 45565544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-14 Score=164.40 Aligned_cols=295 Identities=13% Similarity=0.041 Sum_probs=217.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
.+..|...+..|+|+.|.+.+.+.....+.....++..+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988877655443333444444666699999999999999999999988434445568999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHH--------HHHHHHcC
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--------ANHFFFTG 282 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------a~~~~~~g 282 (1082)
|+++.|...++++++.+|+++.++..++.++...|+ ++.|+..+....+..+.++.....+ ........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 9999999999888776655433311 11111122
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1082)
+.+....+.... ....+.++.....++..+...|+.++|...+.++++ .++ ...... ....+..+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~--l~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVL--LIPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHH--HHhhccCCChHHHH
Confidence 222222222222 222356778888899999999999999999988886 222 222222 22233458888999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCH
Q 001414 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPI 442 (1082)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~ 442 (1082)
..+++.++.+|+++..+..+|.++...+++.+|..+|++++...|++.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-------------------------------- 362 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-------------------------------- 362 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--------------------------------
Confidence 999999999999999999999999999999999999999998888753
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 443 EVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 443 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
.+..++.++...|+.++|..+|++++.
T Consensus 363 -~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 363 -DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 233456666677777777777777765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=163.85 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001414 108 EHFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1082)
+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|.+++..+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455688888999886444 2366799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
.|++++.++|++ ..++..+|.++...|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.++...
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999999 77899999999999999999999999999999887422221 22333445 88888888776654
Q ss_pred C
Q 001414 264 Y 264 (1082)
Q Consensus 264 ~ 264 (1082)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-14 Score=163.04 Aligned_cols=285 Identities=12% Similarity=0.094 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
|+|.+|.+.+.++....+.....++..+......|+++.|..+|.++.+.+|++.. ..+..+.++...|+++.|+..++
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45558888888765554333344444567779999999999999999999999854 44455999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHhccHHhHHHHHHHHH
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--------ALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
++....|++ +.++..++.+|...|+++.|+..+.++.+..+.++.... .+........+ .+.....++
T Consensus 178 ~~~~~~P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---~~~l~~~w~ 253 (398)
T PRK10747 178 KLLEVAPRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---SEGLKRWWK 253 (398)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 999999999 788999999999999999999999999987776544322 11111111111 333444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 001414 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1082)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1082)
..-...|+++.+...++..+...|+.+.|...+.+.+.. +.++......+. ...+++++++..+++.++ ..
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk---~~ 324 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDERLVLLIPR--LKTNNPEQLEKVLRQQIK---QH 324 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHhh--ccCCChHHHHHHHHHHHh---hC
Confidence 444556789999999999999999999999999999863 223333333333 355999999999999998 77
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~ 406 (1082)
|+++..++.+|.++...+++.+|...|+++++..|++. .+..++.++...|+.++|..+|++.+.+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88899999999999999999999999999999998754 46689999999999999999999998753
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-16 Score=167.01 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=205.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001414 446 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 525 (1082)
Q Consensus 446 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 525 (1082)
+..|+.+++.|...+|.-.|+.++. .+|.++.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 4568889999999999999999988 678899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHH-------hhhhhh
Q 001414 526 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM-------LGDLEL 598 (1082)
Q Consensus 526 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-------lg~~~~ 598 (1082)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-+...|........ ...-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999888764322111 000111
Q ss_pred cccchHHHHHHHHHhhhcCC-CCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001414 599 KNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 677 (1082)
Q Consensus 599 ~~g~~~~A~~~~~~al~~~~-~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 677 (1082)
.......-.+.|-.+....| ..|+.+...||-+ |... |.|++|+.+|+.+|...|+|...||.||.
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 12224444555555555444 3578888889988 8877 99999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC---CC-----HHHHHH
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN---TD-----AQILLY 749 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~---~~-----~~~~~~ 749 (1082)
.++...+..+|+..|++++++.| ..+.+++|||.+|+.+|.|.+|+++|-.+|...... .. -.+|.+
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 778899999999999999999999999999764331 11 246666
Q ss_pred HHHHHHHhccHHHHH
Q 001414 750 LARTHYEAEQWQDCK 764 (1082)
Q Consensus 750 La~~~~~~g~~~eA~ 764 (1082)
|=.++...++.+-+.
T Consensus 548 LR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 548 LRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHcCCchHHH
Confidence 666666666655333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-15 Score=144.28 Aligned_cols=210 Identities=21% Similarity=0.201 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
..+++.+|.-|+..|++..|...++++|+.+|++..+|..++.+|...|+ .+.|-+.|+++++++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 56788889999999999999999999999999999999999999999988 888999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcC
Q 001414 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1082)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1082)
.++.+|.+++|...|++++... ..+..+.++.++|.|..+.|+++.|..+|++++. ..|++..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 9999999999999999988653 4466778999999999999999999999999998 77888899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001414 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1082)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~ 413 (1082)
+|-.|...++......+-..+.+.....+-...|+.+.+-.+=.++....|......
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999998888899999999999999999999999888888999876543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=156.71 Aligned_cols=311 Identities=16% Similarity=0.136 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1082)
-....|..++...+|.+|+..|..++...|.+ ...|...+.+++..|+++.|....++.++++|..+......+.++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 34556666666777777777777777777776 55666677777777777777777777777766666666666666666
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1082)
Q Consensus 244 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1082)
.++ ..+|-..|+ +. .++ ....
T Consensus 130 ~~~---~i~A~~~~~--------~~-------------------------------------~~~-----------~~an 150 (486)
T KOG0550|consen 130 LSD---LIEAEEKLK--------SK-------------------------------------QAY-----------KAAN 150 (486)
T ss_pred hHH---HHHHHHHhh--------hh-------------------------------------hhh-----------HHhh
Confidence 555 444443333 00 000 1223
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
|+..+++.+......|....+.+.-+.++...|+++.|...--.++++++.+.++++..|.+++-.++.+.|+..|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 33344444332222344445566678999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccc
Q 001414 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 483 (1082)
Q Consensus 404 ~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 483 (1082)
.++|++..+-..... +.....+..-|.-.++.|++..|.+.|..+|...|.
T Consensus 231 ~ldpdh~~sk~~~~~--------------------~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------- 281 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMM--------------------PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------- 281 (486)
T ss_pred ccChhhhhHHhHhhh--------------------HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc---------
Confidence 999987654333211 112356677788999999999999999999985431
Q ss_pred hhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 001414 484 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 563 (1082)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 563 (1082)
....++..|.+++.+...+|+..+|+.....+++++|.+..++.+.|.++
T Consensus 282 ------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 282 ------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred ------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 12236788999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHcCCChHHHHHhh
Q 001414 564 KARNNLQLSIELVNEALKVNGKYPNALSMLG 594 (1082)
Q Consensus 564 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 594 (1082)
...+++++|++.|+++++...+ .+....+.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 9999999999999999998766 44444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-16 Score=168.13 Aligned_cols=237 Identities=17% Similarity=0.190 Sum_probs=209.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
-|..|..+.+.|+..+|.-.|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..|+..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhcc----CchHHhhHHHHHHHHHHHHHhhcC--CCHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR----APKLEATHLEKAKELYTRVIVQHT--SNLYAANGA 675 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~----~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~l 675 (1082)
.-.+|..++.+-+...|+ |.++ ........ ........+..-.++|-.+....| .++.+..+|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~---y~~l--------~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPK---YVHL--------VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred hHHHHHHHHHHHHHhCcc---chhc--------cccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 999999999998887765 1111 11000000 011123567777888989999999 699999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
|.+|...|+|++|+++|+.++...| ++...|..||-++....+..+||..|.+|++. .|..+.+.|+||.++.
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~P-----nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKP-----NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCC-----chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhh
Confidence 9999999999999999999999998 88999999999999999999999999999998 6888999999999999
Q ss_pred HhccHHHHHHHHHHHHhhCCC
Q 001414 756 EAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 756 ~~g~~~eA~~~l~~al~~~p~ 776 (1082)
..|.|.+|.++|..||.+.+.
T Consensus 510 NlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-15 Score=159.36 Aligned_cols=243 Identities=20% Similarity=0.180 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
..+.++..+..++...+..+ ..+..++.+|.+|...|++.+|+..|.+++. ..|+...+++.+|.++...|+++.|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34445555555664433333 3467899999999999999999999999998 6788899999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC
Q 001414 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP 441 (1082)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~ 441 (1082)
+..|+++++++|++..++..+|.++...|++++|+..|++++..+|+++.....+......+++.+|+..+.+......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~- 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD- 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999987432222112256678888888866221111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
+..+. .+.++...|++..+ ..+..+.... .......|....+
T Consensus 197 ~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~------------------------------------~~~~~l~~~~~ea 238 (296)
T PRK11189 197 KEQWG-WNIVEFYLGKISEE-TLMERLKAGA------------------------------------TDNTELAERLCET 238 (296)
T ss_pred ccccH-HHHHHHHccCCCHH-HHHHHHHhcC------------------------------------CCcHHHHHHHHHH
Confidence 11121 34555556666444 2333333210 0001123455677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN 567 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~g 567 (1082)
++++|.++...|++++|+.+|++++..+| +++...+.+..+....+
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888888875 55666665555544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-15 Score=141.32 Aligned_cols=207 Identities=23% Similarity=0.189 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~ 421 (1082)
..+.+.||.-|+..|++..|...++++++.+|++..+|..++.+|...|..+.|.+.|++++.++|++.+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------- 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------- 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----------
Confidence 3457788888999999999999999999999999999999999999999999999999999998888764
Q ss_pred cCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhh
Q 001414 422 SSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501 (1082)
Q Consensus 422 ~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1082)
+++|.|.+++..|++++|..+|.+++...
T Consensus 105 ----------------------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P----------------------------- 133 (250)
T COG3063 105 ----------------------VLNNYGAFLCAQGRPEEAMQQFERALADP----------------------------- 133 (250)
T ss_pred ----------------------hhhhhhHHHHhCCChHHHHHHHHHHHhCC-----------------------------
Confidence 45556666666666666666666666531
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001414 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581 (1082)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 581 (1082)
.-+..+.++.|+|.|..+.|+++.|..+|++++..+|+++.+...++......|++-.|..+++....
T Consensus 134 ------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 134 ------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred ------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 22334556666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCc
Q 001414 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 621 (1082)
Q Consensus 582 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d 621 (1082)
..+-....+.....+-...|+-..+..+=.+.....|...
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 5555555555555555566666666655555555555533
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=156.72 Aligned_cols=274 Identities=19% Similarity=0.203 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+...|..|+..|..|+...|.++..|..++.++...|+|+.|....++.+++.|.........+.|+...+...+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 35567799999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHH------------HhC------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Q 001414 186 KRAL------------QVH------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1082)
Q Consensus 186 ~~al------------~~~------p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1082)
+..- .+- |.+ ..+.+.-+.|+..+|+++.|...--..+++++.+..+++..|.++....+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 5211 111 333 44567789999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001414 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
.+.|+..|++++.++|....+-.... .+.....+..-|.-.+..|+|..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~~-------------------------~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSASM-------------------------MPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHhh-------------------------hHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 99999999999999998764332110 122235677778889999999999999
Q ss_pred HHHHHHhhCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001414 328 YMASVKEINKP-HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1082)
Q Consensus 328 ~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~ 406 (1082)
|..++..-+.+ ..++..|.+++.+...+|+..+|+..++.+++++|....++...|.|+..+++|++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999732211 12345688899999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 001414 407 PR 408 (1082)
Q Consensus 407 p~ 408 (1082)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 54
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-13 Score=135.91 Aligned_cols=300 Identities=20% Similarity=0.257 Sum_probs=240.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 206 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~lg~~ 206 (1082)
-+..|.-++...+.++|+..|-.+++.+|....+.+.+|.++.+.|..+.|+.+.+..+. .|+. ...+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999999999999999999999999887654 5665 23466789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1082)
|+..|-++.|...|........--..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~---------------- 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV---------------- 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh----------------
Confidence 9999999999999999877655566788888888888888 888998888888887755422
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001414 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1082)
..+..|..++..+....+++.|+..+.++++ .+|..+.+-+.+|.++...|+|..|+..++
T Consensus 178 ----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 178 ----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred ----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 2235667788888888999999999999998 778888899999999999999999999999
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHH
Q 001414 367 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEV 444 (1082)
Q Consensus 367 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~ 444 (1082)
.+++.+|.. +++.-.|..+|.++|+..+.+..+.++.+..++. .+...++.+. .......|..++.+.....++...
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 999999885 4688889999999999999999999999887754 4455556655 666677777777775555555555
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 001414 445 LNNIGVIHFE---KGEFESAHQSFKDALG 470 (1082)
Q Consensus 445 ~~~la~~~~~---~g~~~~A~~~~~~al~ 470 (1082)
++.+...... -|...+.+..+..++.
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555554443 2445666666666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=152.56 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+ +++|+..+.+++...|.++.++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455555555555566666655555555555555555555555555555 555666666666555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcC
Q 001414 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1082)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1082)
++...|++++|...+.+++... ..+.....+..+|.++...|++++|..+|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555555421 1233446677788888888888888888888887 45566677888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p 407 (1082)
++++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+....|
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 888888888888888788888888888888888888888888777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=153.51 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1082)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1082)
..++..+|.+|...|+.. +|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 455666666666666555 677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001414 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|.+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 777777777777777777777777776643 222 44566677777777777777777777777777777777777777
Q ss_pred HHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1082)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1082)
+...|+ +++|+..+.+++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777766 677777777776666666666555566666666665555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-12 Score=147.87 Aligned_cols=298 Identities=15% Similarity=0.155 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
+.++..+.++...|++++|+..+......-++....+-.+|.++...|++++|...|...+..+|++ ...+.++..|..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~g 83 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHh
Confidence 4555566666666677777766666666666666666666666666676666766666666666666 555555555553
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 209 KLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM-EKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1082)
Q Consensus 209 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1082)
... ....-..+|.......|....+...- ... ..|+ .+...+ .++...+.. .-|.+...+-.+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~-~~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~L----- 152 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDF-LEGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPL----- 152 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhh-ccc-CCHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHH-----
Confidence 222 34444555555555555433321111 111 1111 122222 222222222 222223333222
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------CCCCC-ChhhHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-------------NKPHE-FIFPYYGL 348 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~-~~~~~~~l 348 (1082)
|.......-....+...+... ..+|. ..++++.+
T Consensus 153 --------------------------------y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 153 --------------------------------YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred --------------------------------HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 222211111111111111110 01122 24567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1082)
++.|-..|++++|+.++++++...|..++.+...|.+|...|++.+|...++.+..+++.+-......+..+ +.|+.++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887777777766 8899999
Q ss_pred HHHHHHhhcCCC-C---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 428 ALDAFKTKAGEE-V---------PIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 428 Al~~l~~~~~~~-~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
|...+....... . ..+.....|.+|.+.|++..|+..|..+..
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 988888732222 1 123345568889999999999999988776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-14 Score=151.19 Aligned_cols=223 Identities=13% Similarity=-0.035 Sum_probs=197.2
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHcCCChHHHHH
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
..+....++-.+-.++...+..++|+..+.+++.++|.+..+|...+.++...| .+.+++.++.+++..+|++..+|..
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 345556666666677888899999999999999999999999999999999998 6899999999999999999999999
Q ss_pred hhhhhhcccch--HHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHH
Q 001414 593 LGDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 670 (1082)
Q Consensus 593 lg~~~~~~g~~--~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 670 (1082)
.++++.+.|.. ..++.++.+++...|. +..+|...|.+ +... |.+++|++++.++++.+|.|..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchh
Confidence 99999988874 7889999999999887 88999999988 7777 8999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCc----hHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhc
Q 001414 671 AANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFY 739 (1082)
Q Consensus 671 a~~~la~~~~~~---~~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~ 739 (1082)
+++..+.++... |.+ +.++.+..+++...| ++..+|..++.++.. .++..+|+..+..++..
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-- 250 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-- 250 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--
Confidence 999999998776 223 478888889999998 789999999999988 45667899999998875
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 001414 740 YNTDAQILLYLARTHYEA 757 (1082)
Q Consensus 740 ~~~~~~~~~~La~~~~~~ 757 (1082)
.+..+.++..|+.+|...
T Consensus 251 ~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 251 DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCCcHHHHHHHHHHHHhh
Confidence 677899999999999863
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-13 Score=151.62 Aligned_cols=260 Identities=24% Similarity=0.254 Sum_probs=178.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--- 335 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 335 (1082)
.|.-..+...++..|..+|+|+.|+.++..++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 45555666667777777777777777777777651 1123333444557777777777777777777777532
Q ss_pred --CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 336 --NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 336 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
..+|..+.++.+||.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2445556667777777777777777777777777652 222345666677777777777777777766654
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001414 406 DPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485 (1082)
Q Consensus 406 ~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 485 (1082)
.-+-+ ....+..+.++.++|.+|+..|++.+|..+|++++......
T Consensus 355 ~~~~~------------------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~---------- 400 (508)
T KOG1840|consen 355 YLDAP------------------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL---------- 400 (508)
T ss_pred HHhhc------------------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc----------
Confidence 21000 01112345788999999999999999999999999842100
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCChHHHHHH
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLR 558 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~a~~~ 558 (1082)
.....+.....+.++|..+.+.+.+.+|..+|..++.+ +|+....|.+
T Consensus 401 -------------------------~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 401 -------------------------LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred -------------------------ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 00023455678889999999999999999999887753 3555678888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
|+.+|..+|+++.|+++...++..
T Consensus 456 L~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Confidence 888888888888888888887753
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=132.31 Aligned_cols=297 Identities=21% Similarity=0.184 Sum_probs=202.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCC-----HHHHHHHH
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC-----AMALNYLA 275 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la 275 (1082)
+..|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|. .+.|+.+-+..+.. |+. ..++..||
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQTLLES-PDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3456667777788888888888888888888888888888888888 88888876655543 332 34666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHH
Q 001414 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF--IFPYYGLGQVQL 353 (1082)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~la~~~~ 353 (1082)
.-|...|-++.|+.+|..+.... .....+...+..+|....+|++|+..-.+.++..+..... ...|..|++.+.
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 77888888888888887776432 3334667777788888888888888877777643222221 233556777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 001414 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 433 (1082)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~ 433 (1082)
...+.+.|+..+.++++.+|++..+-..+|.++...|++..|++.++.+++.+|...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----------------------- 248 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL----------------------- 248 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------------
Confidence 777888888888888888888888888888888888888888888888888777543
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcC
Q 001414 434 TKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 513 (1082)
Q Consensus 434 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 513 (1082)
++++..+..+|...|+.++...++.++....
T Consensus 249 --------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----------------------------------------- 279 (389)
T COG2956 249 --------SEVLEMLYECYAQLGKPAEGLNFLRRAMETN----------------------------------------- 279 (389)
T ss_pred --------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----------------------------------------
Confidence 3556667777888888888888887777631
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH---hcCHHHHHHHHHHHH
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA---RNNLQLSIELVNEAL 580 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~---~g~~~eA~~~~~~al 580 (1082)
..+.+...++.+-....-.+.|..++.+-+..+|.. ...+++...... .|...+.+..++.++
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 123344445555555556677777777777777774 333333333222 223444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=148.48 Aligned_cols=238 Identities=13% Similarity=-0.015 Sum_probs=186.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH--HHH
Q 001414 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL--GKA 216 (1082)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~--~~A 216 (1082)
..+.+++|+..+.+++..+|.+..+|..++.++...| .+.+++.++.+++..+|.+ ..+|...+.++..+|.. ..+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHHHHcCchhhHHH
Confidence 3467888999999999999999999999999999988 6799999999999999998 67888889888888874 678
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1082)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 296 (1082)
+.++.++++.+|++..+|...+.++...|. +++++..+.++++.+|.+..+|+..+.++...+...
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~----------- 193 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG----------- 193 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc-----------
Confidence 889999999999999999999999999888 899999999999999999988888777654432100
Q ss_pred ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 001414 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIY 372 (1082)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 372 (1082)
. .....+.++.+..+++. ..|.+..+|..++.++.. .+...+|+..+..++...
T Consensus 194 ----------------~---~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 194 ----------------G---LEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ----------------c---ccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 0 00123466777777776 567778888888888877 455677888888888888
Q ss_pred CCcHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 373 PDNCETLKALGHIYVQLG------------------QIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 373 p~~~~~~~~la~~~~~~g------------------~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
|.++.++..|+.+|.... ..++|..++..+-+.+|--...|.
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 888888888888887632 235566666666555565444444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-12 Score=147.66 Aligned_cols=258 Identities=24% Similarity=0.231 Sum_probs=212.8
Q ss_pred CCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 001414 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI--------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAV- 297 (1082)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 297 (1082)
.|.-..+...++..|...|+ ++.|+..++.++.. .|.-...+..+|.+|...+++.+|..+|+.++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~---~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGR---LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred CchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56666777889999999999 99999999999998 5666677777999999999999999999999964
Q ss_pred ----cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 298 ----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1082)
Q Consensus 298 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1082)
+..+|..+.++.+||.+|...|+|.+|..++++++.... ..+.....+..++.++...+++++|+.++.++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 456778888999999999999999999999999997432 34445566888999999999999999999999
Q ss_pred HHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 001414 369 LEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEV 440 (1082)
Q Consensus 369 l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~ 440 (1082)
+++. |.-+..+..||.+|..+|++.+|.++|++++.+.-... ......
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------------~~~~~~ 407 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------------GKKDYG 407 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc------------------------cCcChh
Confidence 9863 23356889999999999999999999999987642110 001112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHH
Q 001414 441 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 520 (1082)
Q Consensus 441 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 520 (1082)
....++++|..+.+.+.+.+|...|.++..... . .....|+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~-~-----------------------------------~g~~~~~~~~ 451 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK-L-----------------------------------CGPDHPDVTY 451 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-H-----------------------------------hCCCCCchHH
Confidence 235678899999999999999999999887320 0 0115677888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001414 521 VLFNLARLLEQIHDTVAASVLYRLILF 547 (1082)
Q Consensus 521 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 547 (1082)
.+.+|+.+|..+|+++.|+++...++.
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999998874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-12 Score=145.18 Aligned_cols=317 Identities=17% Similarity=0.119 Sum_probs=216.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 001414 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1082)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1082)
+|+.+.++..+|.++...|+++.|...+.++....|.+ ....+..+.++...|++++|+..+++++..+|.+ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 78899999999999999999999988888888877754 5567788889999999999999999999999988 4444
Q ss_pred HHHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 201 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~----~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
.. +..+...|.+. .+...+......+|....++..+|.++...|+ +.+|+..+++++...|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 43 55555555444 44444444335667777788888889999998 999999999999999999988899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHH---HHHHHH
Q 001414 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY---GLGQVQ 352 (1082)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~la~~~ 352 (1082)
+++..|++++|+.++.+.+...+..+. ....+..+|.++...|++++|+..|.+++...+. .......+ .+...+
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHH
Confidence 999999999999999888865443222 2345667888999999999999999888642110 11111111 122222
Q ss_pred HHcCCHHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhcCC
Q 001414 353 LKLGDFRSALTN--F-EKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQAFIDLGELLISSD 424 (1082)
Q Consensus 353 ~~~g~~~~A~~~--~-~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~---~~~~~~~la~~~~~~~ 424 (1082)
...|....+..+ + .......|. ........+.++...|+.+.|...+..+....-. ....
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------------ 303 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQP------------ 303 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhh------------
Confidence 333332222222 1 111111111 1222235667777778888888777766543211 1110
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001414 425 TGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472 (1082)
Q Consensus 425 ~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 472 (1082)
.....+....+.+++..|+++.|+..+..++...
T Consensus 304 --------------~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 304 --------------ARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred --------------HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0123455667888999999999999999998743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=147.33 Aligned_cols=310 Identities=15% Similarity=0.062 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 157 (1082)
+.+..+..+|.+|...|+.. .|...+.++....|.+ ....+..|.+++..|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567888898888888766 5677777777666644 456778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001414 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1082)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1082)
+|++..++.. +..++..|.+..+...+.+++ ...|.. ...+..+|.++...|+++.|...+++++..+|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999887775 556655555544444444444 344554 5566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH-H
Q 001414 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-Y 308 (1082)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~ 308 (1082)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|...++.++......+..... -
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 9999999999999 9999999999999887443 345679999999999999999999986443211111111 1
Q ss_pred H-HHHHHHHHcCCHHHHHHH--HHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cH
Q 001414 309 Y-NLARSYHSKGDYEKAGLY--YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (1082)
Q Consensus 309 ~-~la~~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (1082)
. .+...+...|....+..+ +..........+.........+.++...|+.+.|...+..+...... ..
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 1 223333444433333332 11111110011222233346788889999999999999887654321 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001414 377 ETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1082)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~kal~~~ 406 (1082)
.+....+.++...|+++.|+..+..++...
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 567788899999999999999999998754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-12 Score=124.53 Aligned_cols=410 Identities=13% Similarity=0.077 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1082)
.+|..|++++..-.+.+|.+...+..||.+|....+ +..|-.+|++.-.+.|.........+..++..+.+..|+.+
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~---f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE---FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334444444444444444444444444444444433 44444444444444444444444444444444444444444
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1082)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1082)
...+... +.....+...-+.+.+..+++..+..+.++.- ..+......+.|.+.++.|+++.|++-|+.+++
T Consensus 101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-----~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-----SENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-----CCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 4333211 11122334444555566666666666555432 234455677778888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHH-HHHHHhcCCHH-HHHHHHHhhcCCCCCHHH
Q 001414 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----DPRDAQAFID-LGELLISSDTG-AALDAFKTKAGEEVPIEV 444 (1082)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~----~p~~~~~~~~-la~~~~~~~~~-~Al~~l~~~~~~~~~~~~ 444 (1082)
...-++-+-+.++.++++.|++..|+.+...+++. .|........ ...+-..|+.. -+.. ...++
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S---------al~eA 243 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS---------ALVEA 243 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH---------HHHHH
Confidence 77777777788888888888888888777776654 2321100000 00000011110 0111 11356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHH
Q 001414 445 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524 (1082)
Q Consensus 445 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 524 (1082)
++..+.++++.|+++.|...+..+--.. ....++.++.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRa-----------------------------------------E~elDPvTLHN 282 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRA-----------------------------------------EEELDPVTLHN 282 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcc-----------------------------------------cccCCchhhhH
Confidence 7777888999999998877664321100 12235667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH------HHHHhhhhhh
Q 001414 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLEL 598 (1082)
Q Consensus 525 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~lg~~~~ 598 (1082)
++..-.. +++.....-+.-.+.++|--.+++-++..+|++..-++-|...+-. +|.... .+..+-.+-.
T Consensus 283 ~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt 357 (459)
T KOG4340|consen 283 QALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALIT 357 (459)
T ss_pred HHHhccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHh
Confidence 7766544 6677777778888888997788999999999998888887766543 333221 2222222222
Q ss_pred cccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001414 599 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 678 (1082)
Q Consensus 599 ~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~ 678 (1082)
..-..++|.+.+...-..- ++.+.-......+.+..+ +......|++.|+..++.. ..++...+++
T Consensus 358 ~qT~pEea~KKL~~La~~l----------~~kLRklAi~vQe~r~~~-dd~a~R~ai~~Yd~~LE~Y---LPVlMa~Aki 423 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGML----------TEKLRKLAIQVQEARHNR-DDEAIRKAVNEYDETLEKY---LPVLMAQAKI 423 (459)
T ss_pred CCCCHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 3344555555554332210 111100000001111000 0123444555555555543 2344566777
Q ss_pred HHhcCCchHHHHHHHHHHHHhc
Q 001414 679 LAEKGQFDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 679 ~~~~~~~~~A~~~~~~~~~~~p 700 (1082)
++...++..+..+|+...+...
T Consensus 424 yW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 424 YWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred hccccccHHHHHHHHHHHhhhc
Confidence 8888888888888888877764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-12 Score=127.38 Aligned_cols=399 Identities=13% Similarity=0.099 Sum_probs=277.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001414 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394 (1082)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 394 (1082)
+....+|..|++++..-.. ..|.+...+..||.||+...+|..|..||+++-...|......+..+..+++.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 4667789999999887776 6677777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC-HHHH-HHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001414 395 AQELLRKAAKIDPRD-AQAF-IDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 472 (1082)
Q Consensus 395 A~~~l~kal~~~p~~-~~~~-~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 472 (1082)
|+.+...+... |.- .... +.-+..|..+++..+..++++..+ .......++.|++.++.|+++.|++-|+.+++
T Consensus 97 ALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAlq-- 172 (459)
T KOG4340|consen 97 ALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAALQ-- 172 (459)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHHh--
Confidence 99988776543 221 1222 222333488888888888887443 34567788999999999999999999999988
Q ss_pred hhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH----h
Q 001414 473 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF----K 548 (1082)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~ 548 (1082)
....++.+.|+++.++...+++..|+.+..++++ .
T Consensus 173 -----------------------------------------vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 173 -----------------------------------------VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred -----------------------------------------hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 3445678889999999999999999998888765 3
Q ss_pred CCCh-------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc--CCChHHHHHhhhhhhccc
Q 001414 549 YQDY-------------------------VDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLELKND 601 (1082)
Q Consensus 549 ~p~~-------------------------~~a~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 601 (1082)
+|.. ..++...+.++.+.|+++.|.+.+..+--.. .-+|..+.+++.. -..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccC
Confidence 4421 3456667778888899988877665432211 1245566676655 3446
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCC------CHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGA 675 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~~~l 675 (1082)
++......+.-.+.++|- ....+..+--+ |+.. ..|+-|..++ ..+|. +.+.++.+
T Consensus 291 ~p~~g~~KLqFLL~~nPf-P~ETFANlLll-yCKN------------eyf~lAADvL----AEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPF-PPETFANLLLL-YCKN------------EYFDLAADVL----AENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred CccccHHHHHHHHhcCCC-ChHHHHHHHHH-Hhhh------------HHHhHHHHHH----hhCcchhHHHhhHHHHHHH
Confidence 677777777777777664 33444445445 6666 5666665544 34454 23333333
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
-.+..-.-..++|.+-+..+-....+. .....+-......--.......|++.|+..++.| ..++...+++|+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~AkiyW 425 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----LPVLMAQAKIYW 425 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhc
Confidence 222233345566665555444322100 0000011111111111123446777888888875 457788899999
Q ss_pred HhccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 756 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 756 ~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
...++..+.+.|++..+...++..-+.|+|.+
T Consensus 426 ~~~Dy~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 426 NLEDYPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred cccccHHHHHHHHHHHhhhcccceeeeccccc
Confidence 99999999999999999998888888888765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-12 Score=142.45 Aligned_cols=320 Identities=16% Similarity=0.126 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001414 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1082)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1082)
+++....+.++...|++++|+.++..... ...+....+-..|.++..+|++++|...|..++..+|+|...+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46677788888999999999999988766 456667778889999999999999999999999999999999998888
Q ss_pred HHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001414 385 IYVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFE 459 (1082)
Q Consensus 385 ~~~~~g-----~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 459 (1082)
+..... ....-..+|.......|.........-.......+...+..|-........|.++.++-.+|....+..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 873332 567778888888888886543322211111222444444444443333345566777766666443333
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCC------cCCCCc-hHHHHHHHHHHHHhc
Q 001414 460 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH------VELPWN-KVTVLFNLARLLEQI 532 (1082)
Q Consensus 460 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~-~~~~~~~la~~~~~~ 532 (1082)
-...++...+. .+...+.. ...+|. ...+++.+|..|...
T Consensus 161 ~i~~l~~~~~~---------------------------------~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 161 IIESLVEEYVN---------------------------------SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHHH---------------------------------hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 22233322222 11111000 011222 356778899999999
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHH
Q 001414 533 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 612 (1082)
Q Consensus 533 g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 612 (1082)
|++++|+.+++++|...|..++.|+..|.++...|++.+|..+++.+..+++.+-.+-...+..+++.|+.++|...+..
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 001414 613 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 692 (1082)
Q Consensus 613 al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~ 692 (1082)
......+ ...-+..|- +.|.....|.+|.+.|++..|+..|
T Consensus 288 Ftr~~~~-~~~~L~~mQ--------------------------------------c~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 288 FTREDVD-PLSNLNDMQ--------------------------------------CMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred hcCCCCC-cccCHHHHH--------------------------------------HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6554321 111111111 1222334567777778888888877
Q ss_pred HHHHHHh
Q 001414 693 TQVQEAA 699 (1082)
Q Consensus 693 ~~~~~~~ 699 (1082)
..+....
T Consensus 329 ~~v~k~f 335 (517)
T PF12569_consen 329 HAVLKHF 335 (517)
T ss_pred HHHHHHH
Confidence 7777665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-12 Score=136.97 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=136.6
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--
Q 001414 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1082)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1082)
.++..+..++.+|..++..|+++.|+..|++++..+|+++ .+++.+|.+++..|++++|+..|++++...|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999875 57899999999999999999999999999998732
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHH
Q 001414 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 198 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
.+++.+|.++... |+++.|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 2678888888876 666777777777777777665544333222111100 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
......+|..++..|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 011234555666666666666666666665554555566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
.++...|++++|+.+++.+...+|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666776666666666655544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-12 Score=135.09 Aligned_cols=194 Identities=22% Similarity=0.325 Sum_probs=155.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--
Q 001414 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE-- 232 (1082)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 232 (1082)
.++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456688999999999999999999999999999999873 357899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHhc-----cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchH
Q 001414 233 -ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306 (1082)
Q Consensus 233 -a~~~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 306 (1082)
+++.+|.++.... +.+.+..|+..|.+++..+|.+..+...+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~-------------------------------- 155 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK-------------------------------- 155 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH--------------------------------
Confidence 6888888887651 11238888999999888888876443211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 001414 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALG 383 (1082)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la 383 (1082)
..++.... .+ ......+|.+|+..|++.+|+..|..++...|+. +.+++.+|
T Consensus 156 --~~~~~~~~--------------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 156 --KRMDYLRN--------------RL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred --HHHHHHHH--------------HH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 11111111 00 1123578899999999999999999999997764 58999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 384 HIYVQLGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~~p 407 (1082)
.++...|++++|..+++.+....|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999988877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-13 Score=127.72 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 114 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
..+|+++++++|++ ++.+|.++...|++++|+..|.+++..+|.+..+++.+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999999874 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
++ +.+++.+|.|+..+|++++|+..|.+++...|+++..+..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 889999999999999999999999999999999999998888766544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-09 Score=123.49 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=159.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----
Q 001414 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----- 196 (1082)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----- 196 (1082)
..+|.+..+|..++..+...|++++|+..++..+..+|+.+.+++.+|.++++.+++.++..+ .++...+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 456888999999999999999999999999999999999999999999999999998877766 5555555441
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 197 -------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 197 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
..+++.+|.||-++|+.++|..+|+++++.+|+++.++..+|..+... + .++|+.++.+++..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHH
Confidence 145566666666666666666666666666666666666666666655 4 66666666666544
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChh
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1082)
++..++|..+..+..+++... |.+...++.+ .++..... .....+.
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i----------------~~ki~~~~-~~~~~~~ 224 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRI----------------ERKVLGHR-EFTRLVG 224 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHH----------------HHHHHhhh-ccchhHH
Confidence 333344444444444444221 2222222211 11111100 0111122
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHH
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------------GQIEKAQELLRKAA 403 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~l~kal 403 (1082)
.+.-+-..|...++|++++.+|..+++.+|.|..+...++.+|... ..+..|+..|++.+
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 3344446677777788888888888888888888888887777633 23566677777776
Q ss_pred HhCCCC
Q 001414 404 KIDPRD 409 (1082)
Q Consensus 404 ~~~p~~ 409 (1082)
...+.+
T Consensus 305 ~f~~G~ 310 (906)
T PRK14720 305 VFDTGN 310 (906)
T ss_pred eecCCC
Confidence 665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-09 Score=114.66 Aligned_cols=298 Identities=20% Similarity=0.189 Sum_probs=187.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 001414 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1082)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1082)
|..-+..|+|.+|+++..+.-. ..+.....+..-+.+-...|+++.|-.++.++.+. .+.+........+.++..
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae---~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAE---HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhh---cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHh
Confidence 4445567889999888887653 33445566777788888999999999999998863 234556678888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001414 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1082)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~ 434 (1082)
.|++..|.....+++...|.++.++.....+|...|++.....++.++-+..--+..-+..+-.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~---------------- 229 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ---------------- 229 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999888877654322221111110
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCC
Q 001414 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (1082)
.++..+-.-....+..+.-..+++..-. .
T Consensus 230 --------~a~~glL~q~~~~~~~~gL~~~W~~~pr-------------------------------------------~ 258 (400)
T COG3071 230 --------QAWEGLLQQARDDNGSEGLKTWWKNQPR-------------------------------------------K 258 (400)
T ss_pred --------HHHHHHHHHHhccccchHHHHHHHhccH-------------------------------------------H
Confidence 0111000000000000000011111000 0
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhh
Q 001414 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 594 (1082)
--.++.+...++.-+..+|+.++|..+...+++..-+.. +..-.-....+++..=++..++.++..|++|..+..+|
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 012345555566666667777777777777666544322 11111233455666666667777777777777777777
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHH
Q 001414 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 662 (1082)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 662 (1082)
.++++.+.|.+|..+|+.+++..|+ .+.+..+|.. |-.. |....|.+.++.++
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~-~~~~------------g~~~~A~~~r~e~L 388 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPS--ASDYAELADA-LDQL------------GEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHH-HHHc------------CChHHHHHHHHHHH
Confidence 7777777777777777777666554 3333446666 6666 66677776666665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-08 Score=112.85 Aligned_cols=619 Identities=15% Similarity=0.106 Sum_probs=330.4
Q ss_pred HHHHHHHhcCCChhHHHHHH--HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 001414 28 DILDILKAEQAPLDLWLIIA--REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105 (1082)
Q Consensus 28 ~l~~~l~~e~~~~~~~~~~a--~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~ 105 (1082)
=|.+++-.+.|+....-.+- ..|.--|..+.|-+-+..+-+. .+|..+|...++..+++..+ -
T Consensus 714 pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--------------~vW~nmA~McVkT~RLDVAk-V 778 (1416)
T KOG3617|consen 714 PLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--------------SVWDNMASMCVKTRRLDVAK-V 778 (1416)
T ss_pred hHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--------------HHHHHHHHHhhhhccccHHH-H
Confidence 35566666777665432221 2355679999988877765332 25556666555544444210 0
Q ss_pred hHHHHHHH--HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001414 106 KEEHFILA--TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1082)
Q Consensus 106 k~~~~~~A--~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1082)
=-|+...| ...++++. .+|. ..-...|.+....|..++|..+|.+.-..+ .+-..|...|.+++|.+
T Consensus 779 ClGhm~~aRgaRAlR~a~-q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 779 CLGHMKNARGARALRRAQ-QNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred hhhhhhhhhhHHHHHHHH-hCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHH
Confidence 11222222 33445554 3343 334556788889999999999999876544 44567888999999988
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
+-+.--.+ ..-..|+..+.-+...++.+.|+++|+++-. | -......| .+ +..+++.|-+-
T Consensus 848 iAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~--h-afev~rmL-------~e---~p~~~e~Yv~~--- 908 (1416)
T KOG3617|consen 848 IAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGV--H-AFEVFRML-------KE---YPKQIEQYVRR--- 908 (1416)
T ss_pred HHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCC--h-HHHHHHHH-------Hh---ChHHHHHHHHh---
Confidence 76543222 2345788899999999999999999998521 1 00111110 11 22333333221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChh
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1082)
..++..|...|.++-..|+.+.|+.+|..+. -|+.+.++.+-+|+.++|...-++. ....
T Consensus 909 -~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~es--------gd~A 968 (1416)
T KOG3617|consen 909 -KRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEES--------GDKA 968 (1416)
T ss_pred -ccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHhc--------ccHH
Confidence 2345667777777777777777777777653 4556666666677777766554332 2344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC--cHHH------------HHHHHHHHHHcC-CHHHHHHHHHHH
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY------PD--NCET------------LKALGHIYVQLG-QIEKAQELLRKA 402 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~--~~~~------------~~~la~~~~~~g-~~~~A~~~l~ka 402 (1082)
+.+.||..|-..|++.+|+..|.++-... .. ..+- +...+..|...| ....|..+|-++
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 56667777777777777776666654321 11 0111 112223333333 444444444443
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001414 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 482 (1082)
Q Consensus 403 l~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 482 (1082)
--+. ..|-.. ...+.-.|++++.+......++.++...+.++....+|++|..++-.+-....-
T Consensus 1049 Gm~~-------kALelA-F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A-------- 1112 (1416)
T KOG3617|consen 1049 GMIG-------KALELA-FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA-------- 1112 (1416)
T ss_pred cchH-------HHHHHH-HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------
Confidence 1110 000001 122233455666666677788999999999999999999999887655431100
Q ss_pred chhhhhhhhhHHhhhhhhhhhhhcc----CCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHH
Q 001414 483 KTYVIDASASMLQFKDMQLFHRFEN----DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 558 (1082)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~ 558 (1082)
+..+ ..++...-+.+.. .............++..+|.++.++|.|..|.+-|.++=. .+.
T Consensus 1113 ----lqlC----~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~ 1176 (1416)
T KOG3617|consen 1113 ----LQLC----KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLS 1176 (1416)
T ss_pred ----HHHH----hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHH
Confidence 0000 0011111111111 1111111223456788899999999999999888877522 222
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhh
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 638 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~ 638 (1082)
-...+++.|+.++-.-+.+. ....++|. ++.-|++.-+|..--+.++.+...+.+ ..++-.|++. |-..+.
T Consensus 1177 AMraLLKSGdt~KI~FFAn~-----sRqkEiYI-mAANyLQtlDWq~~pq~mK~I~tFYTK--gqafd~LanF-Y~~cAq 1247 (1416)
T KOG3617|consen 1177 AMRALLKSGDTQKIRFFANT-----SRQKEIYI-MAANYLQTLDWQDNPQTMKDIETFYTK--GQAFDHLANF-YKSCAQ 1247 (1416)
T ss_pred HHHHHHhcCCcceEEEEeec-----cccceeee-ehhhhhhhcccccChHHHhhhHhhhhc--chhHHHHHHH-HHHHHH
Confidence 33455666666543211111 11222332 333344444555555555555444433 2344556666 554432
Q ss_pred hhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 001414 639 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 718 (1082)
Q Consensus 639 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~ 718 (1082)
.+.. +-.+|++|...++.+. .++.+...-..+...+..+.+.. ....+.+..-.++
T Consensus 1248 iEie----e~q~ydKa~gAl~eA~--------------kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~ 1303 (1416)
T KOG3617|consen 1248 IEIE----ELQTYDKAMGALEEAA--------------KCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIM 1303 (1416)
T ss_pred hhHH----HHhhhhHHhHHHHHHH--------------HHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 2110 1133444333332221 11111111112222222222211 0111222222223
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc
Q 001414 719 FAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 719 ~~~g~~~~Ai~~~~~al~~~~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 779 (1082)
- .+....|.....++.. |.-++ ..++-.|...|....+|..|-..+...-...|+-..
T Consensus 1304 ~--eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~ 1365 (1416)
T KOG3617|consen 1304 K--EDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDL 1365 (1416)
T ss_pred h--hhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccch
Confidence 2 2566677777777765 22222 677888899999999999999999999999987433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=122.04 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=117.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 655 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 734 (1082)
Q Consensus 655 ~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a 734 (1082)
..+|+++++.+|++ +..+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|+++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999986 44689999999999999999999999998 78999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 001414 735 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789 (1082)
Q Consensus 735 l~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~ 789 (1082)
+.. .|.++.+++.+|.++...|++++|+..|.+++.+.|+++..+.+.+.+..
T Consensus 85 l~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 997 78899999999999999999999999999999999999999999999754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-09 Score=111.15 Aligned_cols=296 Identities=18% Similarity=0.104 Sum_probs=179.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1082)
.-|..-+..|+|.+|.....+.-+..+....+++.-|.+.-+.|+++.|-.++.++-+..+++.-.+.+..+.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34555666777888887777777766666777777777777778888888887777777555545667777777777788
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH-H----HHHHcCCHHHH
Q 001414 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA-N----HFFFTGQHFLV 287 (1082)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~----~~~~~g~~~~A 287 (1082)
++.|.....+++...|.++.++.....+|...|+ +.....++.+.-+..--+..-...+- . ++-..++-..+
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888877777777777777777777777777 66666666555544322111111100 0 01111111111
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1082)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1082)
..+....-..+..-...+.....++.-+...|++++|......+++.. -+. . ...-.-...-+++..-++..++
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~-~--L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDP-R--LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCh-h--HHHHHhhcCCCCchHHHHHHHH
Confidence 111111111111112234455555666666666666666666666521 111 1 1111122345566666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHH
Q 001414 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNN 447 (1082)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~ 447 (1082)
.++..|+++..+..||.+|.+.+.|.+|..+|+.++...| ....+..
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------------------------------s~~~~~~ 366 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------------------------------SASDYAE 366 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------------------------------ChhhHHH
Confidence 6666666666666666666666666666666666666554 3456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001414 448 IGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 448 la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
+|.++.+.|+...|...+++++.
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 88888888999988888888874
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=121.53 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 184 (1082)
+...+++..+.+++..+|+++..|+.+|.+|...|+++.|+..|.+++..+|+++.++..+|.++ ...|+ +.+|..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777654 45565 4677777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001414 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1082)
Q Consensus 185 ~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1082)
+++++..+|++ ..+++.+|.+++..|++++|+.+|+++++.+|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777776 56677777777777777777777777777666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-11 Score=141.88 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=177.2
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
..|.+..++..++..+...+++++|+.++...+..+|+....|+.+|.++...+++.++..+ .++.+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 78889999999999999999999999999999999999999999999999999887776655 44444433
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHH
Q 001414 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 673 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 673 (1082)
..++ .++.++-..+-..+. +.+++..||.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3334 333444433333333 56789999999 9998 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------
Q 001414 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK---------------- 737 (1082)
Q Consensus 674 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~---------------- 737 (1082)
++|..|... ++++|+.++.+++... ...++|..+.+++++.+..
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998753 3334555555555555543
Q ss_pred --hcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 001414 738 --FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789 (1082)
Q Consensus 738 --~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~ 789 (1082)
.....-+.++.-|-..|...++|++++.+|+.+++..|.|..+++.++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1112223444444477888899999999999999999999999999999976
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-08 Score=131.33 Aligned_cols=380 Identities=15% Similarity=0.074 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al 121 (1082)
+.-..|..|...|.+.+|+..+..+... ..-..++...++.+...|... .+..++..+-
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~-----------~l~~~l~~lp 401 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELS-----------LLEECLNALP 401 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChH-----------HHHHHHHhCC
Confidence 3445566677778877777766655321 112344455566665555544 3333333320
Q ss_pred -hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 122 -RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 122 -~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.....++......+.+++..|++++|...+..+....+. .......++.++...|++..|...+++++..
T Consensus 402 ~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 402 WEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred HHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 011233445566777888888888888888877654221 1233455677778888888888888888875
Q ss_pred CCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHH
Q 001414 192 HPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE------NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1082)
Q Consensus 192 ~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 261 (1082)
.|... ......+|.++...|+++.|...+.+++..... ...++..++.++...|+ +..|...+.+++
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~al 558 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF---LQAAYETQEKAF 558 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 54431 124456777888888888888888888765332 12345566777777777 777777777776
Q ss_pred HhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 262 EIYP--------YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1082)
Q Consensus 262 ~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1082)
.... ....++..++.+++..|+++.|...+..++..... ......++..++.++...|+++.|...+.++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6421 11233445667777777777777777776643221 1122345556777777777777777777777
Q ss_pred HHhhCCCCCChhhH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 332 VKEINKPHEFIFPY----YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 332 l~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
.............. ......+...|+.+.|..++.......+... ..+..++.++...|++++|...+.+++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54322111111000 0112334456777777776655443221111 124456777777777777777777766
Q ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471 (1082)
Q Consensus 404 ~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 471 (1082)
....... .......++..+|.++...|+.++|...+.+++..
T Consensus 719 ~~~~~~g--------------------------~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 719 ENARSLR--------------------------LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHhC--------------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5421100 01112346677899999999999999999999984
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.9e-09 Score=132.46 Aligned_cols=387 Identities=14% Similarity=0.025 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
.+...+..+...|++..|...+..+- ..+.........+......|++..+..++..+-.. ............+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~--~~~~~~~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE--VLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH--HHhcCcchHHHHH
Confidence 33444555555666655554333221 11111223334445555556655554444332110 0011122234455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYPD---------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~ 420 (1082)
.++...|++++|...+..+....+. ...+...++.++...|+++.|...++.++...|......
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 489 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS------- 489 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH-------
Confidence 5556666666666666655443211 122334455566666666666666666655433221000
Q ss_pred hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhh
Q 001414 421 ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 500 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1082)
....+..+|.++...|+++.|...+.+++......
T Consensus 490 --------------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~------------------------- 524 (903)
T PRK04841 490 --------------------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQH------------------------- 524 (903)
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-------------------------
Confidence 11345678888999999999999999988632100
Q ss_pred hhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHhcCHHHH
Q 001414 501 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLS 572 (1082)
Q Consensus 501 ~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~a~~~la~~~~~~g~~~eA 572 (1082)
........++.++|.++...|+++.|...+.+++.... ....++..+|.++...|++++|
T Consensus 525 ------------g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 525 ------------DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred ------------cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 01111345677889999999999999999999887421 1233456788889999999999
Q ss_pred HHHHHHHHHHcCC-----ChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCc-HHHH-H---HhHhHHHHHHhhhhcc
Q 001414 573 IELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYAT-L---SLGNWNYFAALRNEKR 642 (1082)
Q Consensus 573 ~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d-~~~~-~---~Lg~~~y~~~~~~~~~ 642 (1082)
...+.+++..... ...++..++.++...|++..|...+..+........ ...+ . .+....+...
T Consensus 593 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 666 (903)
T PRK04841 593 EQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------ 666 (903)
T ss_pred HHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------
Confidence 9999998876432 234566788899999999999999999876533211 1100 0 0111102222
Q ss_pred CchHHhhHHHHHHHHHHHHHhhcCCCHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHH
Q 001414 643 APKLEATHLEKAKELYTRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHV 717 (1082)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~----a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~ 717 (1082)
|+.+.|..++.......+.... ....++.++...|++.+|...+.+++...... .......++..+|.+
T Consensus 667 ------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 667 ------GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred ------CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 6677777776555442222111 13456666777777777777777776654211 111233456667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 001414 718 YFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 718 ~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
+...|++.+|...+.+++..+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=108.00 Aligned_cols=211 Identities=16% Similarity=0.075 Sum_probs=170.6
Q ss_pred HHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhh
Q 001414 51 FKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPST 130 (1082)
Q Consensus 51 ~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~ 130 (1082)
+...+.++.+++.+..+......-+.+ +.-.++-.+..+.+-.|+.. -|..++++....-|++..+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~---e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGD---EIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRV 88 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCc---hHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhH
Confidence 445566777777666543211110111 22223444444445555555 8889999887777999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
....|..+-..|++++|+++|+..+.-+|.|...+.....+...+|+--+|++.+...+...+++ ..+|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999888888999999999999999999999999 88899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1082)
|+|.+|.-+++.++-+.|.++..+..+|.+++-.|...++..+.++|.++++++|.+..+++.+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999999999999999999999888888999999999999999977776665443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-07 Score=106.84 Aligned_cols=95 Identities=18% Similarity=0.011 Sum_probs=68.1
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 525 LARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 525 la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
+..++.+.++ .-+|+-+++..+...|.++.+.+.+..+|...|-+..|.+.|..+--.+-..-..-+.+-..+.-.|
T Consensus 442 Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g 521 (932)
T KOG2053|consen 442 LIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSG 521 (932)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcc
Confidence 3345555554 4578889999999999999999999999999999999999998653322211122223333445667
Q ss_pred chHHHHHHHHHhhhcCCC
Q 001414 602 DWVKAKETFRAASDATDG 619 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~ 619 (1082)
++.-+...+...+....+
T Consensus 522 ~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDS 539 (932)
T ss_pred cchhHHHHHHHHHHHHhh
Confidence 888888888888876654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-11 Score=118.59 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH-HHcCC--HH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 725 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 725 (1082)
+..++++..+++++..+|++..+|..+|.+|...|+++.|+..|++++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 6788999999999999999999999999999999999999999999999998 7899999999975 67787 59
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Q 001414 726 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 726 ~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~ 778 (1082)
+|+..++++++. +|.++.+++.||.+++..|++++|+.+|++++.+.|.+.
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999998 788899999999999999999999999999999998764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-10 Score=123.20 Aligned_cols=222 Identities=19% Similarity=0.183 Sum_probs=199.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
|........++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|+++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 445566778999999999999999999875 5667788999999999999999999998 7788999999999
Q ss_pred HH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhh
Q 001414 419 LL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 497 (1082)
Q Consensus 419 ~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1082)
+. ...-+++|.++.+.. ...+...+|......++|.++...|+..+.
T Consensus 466 v~~d~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~--------------------------- 513 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLE--------------------------- 513 (777)
T ss_pred hccChHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhh---------------------------
Confidence 98 777889999888762 233556667777788999999999999988
Q ss_pred hhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 498 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
++|....+||.+|.+..+.+++..|...|..++...|++..+|.+++..|...++-.+|...++
T Consensus 514 ----------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 514 ----------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred ----------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcC
Q 001414 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 578 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 617 (1082)
++++-+-.+..+|-++..+..+.|.+++|+..+.+.+.+.
T Consensus 578 EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 578 EALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998854
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-10 Score=108.61 Aligned_cols=184 Identities=19% Similarity=0.082 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
..++-.+..+....|+.+.|..+++.... ..|....+
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------------------------------------------~fp~S~RV 88 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRD-------------------------------------------RFPGSKRV 88 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------------------------hCCCChhH
Confidence 44556667777888999999999988766 34778888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhccc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
.-..|..+...|++++|+++|...++.+|.+...+-+...+...+|+.-+|++.+...+..++.++++|..++.+|+..|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 679 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 679 (1082)
++.+|.-+++.++-..|- ++..+..++.+ ++..+.. .++.-|.++|.++++++|.+..+++++-.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~-n~l~f~rlae~-~Yt~gg~---------eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPF-NPLYFQRLAEV-LYTQGGA---------ENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHcCCC-cHHHHHHHHHH-HHHHhhH---------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999988887 77777889999 5444332 6789999999999999999998887774433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-10 Score=113.90 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
.+...+-+....+|.+..+ ...+..+...|+-+.+..+..++...+|.+...+..+|...+..|+|..|+..++++..+
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 4666666677788988888 889999999999999999999988889999888888999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 192 ~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
.|++ ..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++..|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9999 88899999999999999999999999999999999999999999999999 9999999999988888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 272 NYLANHFFFTGQHFLVEQLTETAL 295 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l 295 (1082)
..|+.+....|++..|..+...-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 888888888888888887765543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=122.89 Aligned_cols=255 Identities=19% Similarity=0.111 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNC 376 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~ 376 (1082)
.+|..+|.+|+..++|.+|+++...-+. .++..-....+.-+||.++-..|.|++|+.++.+-+.+.. ...
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 4566677777777777777776544332 1223333444566788888888999999888888776532 134
Q ss_pred HHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHH
Q 001414 377 ETLKALGHIYVQLGQI-------------EKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIE 443 (1082)
Q Consensus 377 ~~~~~la~~~~~~g~~-------------~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~ 443 (1082)
.+++++|.+|...|+. +++...|+.+++....+......++. ......
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD-------------------r~aqGR 196 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD-------------------RLAQGR 196 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------HHhhcc
Confidence 6888899998877652 33444444443332222222222221 122235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001414 444 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 523 (1082)
Q Consensus 444 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (1082)
++-++|..|+-+|+|+.|+..-+.-+.+... +........++.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e-------------------------------------fGDrAaeRRA~s 239 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE-------------------------------------FGDRAAERRAHS 239 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHH-------------------------------------hhhHHHHHHhhc
Confidence 6788999999999999999988776653210 001122456888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhC----CC--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC------CChHHHH
Q 001414 524 NLARLLEQIHDTVAASVLYRLILFKY----QD--YVDAYLRLAAIAKARNNLQLSIELVNEALKVNG------KYPNALS 591 (1082)
Q Consensus 524 ~la~~~~~~g~~~~A~~~~~~~l~~~----p~--~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~ 591 (1082)
++|.++.-.|+++.|+++|+..+.+. .. .+...+.||..|.-..++..||.++.+-+.+.. ....+++
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw 319 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW 319 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999886533 22 256678899999999999999999998777652 2345888
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhc
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDA 616 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~ 616 (1082)
.+|..+...|...+|+.+.+..+..
T Consensus 320 SLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 320 SLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999888877664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=114.01 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHH
Q 001414 572 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 651 (1082)
Q Consensus 572 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~ 651 (1082)
+...+-.....+|.+..+ ..+...+...|+-+.+..+..++...+++ +...+..+|.. .+.. |++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~-~~~~------------g~~ 116 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKN-QIRN------------GNF 116 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHH-HHHh------------cch
Confidence 555566666777888888 78888888888888888888777666665 77777667776 6666 889
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001414 652 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 731 (1082)
Q Consensus 652 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~ 731 (1082)
..|+..+.++....|+|+.+++.+|.+|.+.|+++.|..-|.++++..| ..|.+..|+|..|+-.|++..|..++
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-----~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-----CCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 67889999999999999999999998
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 001414 732 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 769 (1082)
Q Consensus 732 ~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 769 (1082)
..+... .+.+..+..+|+.++...|++.+|..+..+
T Consensus 192 l~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 192 LPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888775 455788889999999999999888877543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-11 Score=122.09 Aligned_cols=276 Identities=20% Similarity=0.181 Sum_probs=167.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~ 421 (1082)
..-|.-+++.|++...+..|+.+++...++. .+|..||.+|..+++|++|+++-..-+. ++.++
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-----------lar~l- 88 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-----------LARLL- 88 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-----------HHHHh-
Confidence 3446778889999999999999998876654 3556677777777777777665433221 11111
Q ss_pred cCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhh
Q 001414 422 SSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501 (1082)
Q Consensus 422 ~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1082)
..........-++|..+-..|.|++|+.+..+-+......
T Consensus 89 --------------gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-------------------------- 128 (639)
T KOG1130|consen 89 --------------GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-------------------------- 128 (639)
T ss_pred --------------cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--------------------------
Confidence 1111122345567888888888888888887766521100
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHhCCC------hHHH
Q 001414 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHD--------------------TVAASVLYRLILFKYQD------YVDA 555 (1082)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~------~~~a 555 (1082)
...-....++|++|.+|...|+ ++.|..+|..-+++... ...+
T Consensus 129 -----------gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa 197 (639)
T KOG1130|consen 129 -----------GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRA 197 (639)
T ss_pred -----------hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcch
Confidence 0111245788888888876653 22344444444432221 1345
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC------hHHHHHhhhhhhcccchHHHHHHHHHhhhcC----C-CCcHHH
Q 001414 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDAT----D-GKDSYA 624 (1082)
Q Consensus 556 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~-~~d~~~ 624 (1082)
+-.||..|+-.|+|+.|+..-+.-+.+.... ..++.++|+++.-.|+++.|+++|+..+.+. . .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 6677777788888888888777666654322 2377788888888888888888888766532 1 123446
Q ss_pred HHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcC------CCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 001414 625 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697 (1082)
Q Consensus 625 ~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~ 697 (1082)
.++||+. |... +.+.+|+.++.+-|.+-. ....+++.||..+...|..++|+.+..+.++
T Consensus 278 cYSLgNt-ytll------------~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNT-YTLL------------KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhH-HHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6677777 7666 777777777766554321 1333444555555555555555554444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-11 Score=112.95 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=110.4
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001414 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1082)
Q Consensus 115 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1082)
..|.+++..+|.+....+.+|.+++..|++++|...|+.++..+|.++.++..+|.+++..|++.+|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 195 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
+ +.+++.+|.|+...|+++.|+..|+++++.+|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 78899999999999999999999999999999877644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-10 Score=125.74 Aligned_cols=244 Identities=17% Similarity=0.104 Sum_probs=207.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCC
Q 001414 436 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 515 (1082)
Q Consensus 436 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (1082)
...++....-..++.++...|-...|+..|++.
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl----------------------------------------------- 424 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL----------------------------------------------- 424 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----------------------------------------------
Confidence 345556677788899999999999999999753
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 595 (1082)
..+.....||...|+..+|..+..+-++ .|.++..|..+|.+.....-+++|.++.+.. +..+...+|.
T Consensus 425 ----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~ 493 (777)
T KOG1128|consen 425 ----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLAL 493 (777)
T ss_pred ----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhcc
Confidence 5667788899999999999999999888 6666888888887777666666666666553 3447778888
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 596 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 596 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
.....+++.++..+|+..+.++|- ...+|+.+|.+ +++. +++..|...|..++..+|++..+|+++
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 888899999999999999999987 88899999988 8888 999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
+..|...+.-.+|...++.++..+- .+..+|.|.-.+..+.|.+++|++.|.+.+..-....++.++..+.....
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999999999999999999999874 57889999999999999999999999999986545557777777766555
Q ss_pred H
Q 001414 756 E 756 (1082)
Q Consensus 756 ~ 756 (1082)
.
T Consensus 635 ~ 635 (777)
T KOG1128|consen 635 E 635 (777)
T ss_pred h
Confidence 4
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-10 Score=130.91 Aligned_cols=156 Identities=14% Similarity=0.005 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001414 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1082)
Q Consensus 113 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1082)
++.-+....+-.|.++.+++.+|.+....|.+++|...++.++...|++..++..+|.++.+.+++++|+..+++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 34444444566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1082)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1082)
|++ +..++.+|.++..+|++++|..+|++++..+|++..+++.+|.++...|+ .++|...|.+++.....-...+.
T Consensus 151 p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 151 SSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred CCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHHH
Confidence 999 88899999999999999999999999999999999999999999999999 99999999999998766554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=110.78 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=111.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 656 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735 (1082)
Q Consensus 656 ~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al 735 (1082)
..|.+++..+|++..+.+.+|.++...|++.+|...|++++...| .++.+++++|.++..+|++++|+.+|+.++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchh
Q 001414 736 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 736 ~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 781 (1082)
.. .|.++.+++.+|.++...|++++|+..|++++++.|++....
T Consensus 79 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 AL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 87 677899999999999999999999999999999999886643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-10 Score=104.23 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=100.8
Q ss_pred HHhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001414 120 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1082)
Q Consensus 120 al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1082)
+..+. +..-...+.+|..++..|++++|..+|+.+...+|.+...|+++|.++..+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 67778899999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
+++..|.|++..|+.+.|+..|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-09 Score=127.28 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al 121 (1082)
+.-++-...-..|.+..+..-|-.++. |....+....++..||.+...+|..+ +|..++..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~~ 113 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLD------YVRRYPHTELFQVLVARALEAAHRSD-----------EGLAVWRGIH 113 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHH------HHHhccccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHHH
Confidence 444444555555666555555544422 11111234678889999999999888 9999999999
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001414 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1082)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1082)
.+.|++..++..++.++.+.+++++|+..+++++..+|++..+++.+|.++...|+|++|+.+|++++..+|+. +.+++
T Consensus 114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~ 192 (694)
T PRK15179 114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYV 192 (694)
T ss_pred hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988988 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
.+|.++...|+.++|...|++++.....-...+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999876655443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-05 Score=88.91 Aligned_cols=239 Identities=14% Similarity=0.066 Sum_probs=163.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001414 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1082)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1082)
-.+..+++.+|+....++++..|+...+....|.++++.|++++|..+++..-...+++ ....-.+-.||..+|++++|
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHH
Confidence 35677899999999999999999999999999999999999999998888776666776 67788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 001414 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG-QHFLVEQLTETAL 295 (1082)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l 295 (1082)
..+|++++..+|. ...+..+-..|.+.++ |.+-.+.--+..+..|.++..+.....+++..- ..+.+
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~-------- 164 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENEL-------- 164 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccc--------
Confidence 9999999999998 8888888888888877 655555555566678888765555444443221 11110
Q ss_pred hccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH-HHHh-CC
Q 001414 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK-VLEI-YP 373 (1082)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~-~p 373 (1082)
....+. .-|...+++.+...+ .-....-....-.++...|.+++|...+.. .... .+
T Consensus 165 --------~~~i~l------------~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 165 --------LDPILL------------ALAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred --------ccchhH------------HHHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 000111 123334444443210 111111122223455567778888777733 2232 33
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
.+.......+..+...+++.+-.++..+++...+++
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 344444555667777778888888888887777776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=112.08 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
+-.-|.-++..++|.+|+..|.++|.++|+|+..|..+|.+|.++|.|..|++.++.++.++|.. ...|..+|.+|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHcc
Confidence 33456666666677777777777777777777777777777777777777777777777777766 56667777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
|++.+|+..|+++|.++|++...+..|..+-...+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777777777777777777766655555554444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=111.36 Aligned_cols=121 Identities=20% Similarity=0.263 Sum_probs=106.2
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1082)
Q Consensus 89 la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1082)
+|.-.-..|+.. .+.++|.+|+..|++||.++|.++..|..+|.+|.+.|.++.|++.++.++.++|....+|..+
T Consensus 80 ~AE~LK~eGN~~----m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 80 LAESLKNEGNKL----MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 344444444433 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHH
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~ 214 (1082)
|.+|+.+|+|.+|+..|+++|.++|++ ..+...|..+-.+++...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999 676776766666665554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-06 Score=95.37 Aligned_cols=327 Identities=17% Similarity=0.154 Sum_probs=162.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~ 426 (1082)
.+.+.+.+|.+++|...|.+.-. +-.|-.+|...|.+++|.++-+.--.+. -...|+..+..+ ..++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHH
Confidence 34444555555555555555432 1233444555555555555443221111 123344444444 555555
Q ss_pred HHHHHHHh---------------------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001414 427 AALDAFKT---------------------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485 (1082)
Q Consensus 427 ~Al~~l~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 485 (1082)
.|+++|++ ......++.+|...|..+...|+.+.|+.+|..|-.-.....+.- ...
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C---~qG 952 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC---IQG 952 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe---ecc
Confidence 55555554 111223446667778888888888888888887754211000000 000
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH------hCCChHHHHHHH
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRL 559 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~a~~~l 559 (1082)
...-..+ +.....+..+.|.+|+.|...|++.+|+.+|.++-. +...+ +.--.|
T Consensus 953 ------------k~~kAa~-------iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L 1012 (1416)
T KOG3617|consen 953 ------------KTDKAAR-------IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRL 1012 (1416)
T ss_pred ------------CchHHHH-------HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 0000000 002234667788888888888888888888877643 21111 111122
Q ss_pred HHHHHHhc--CHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh----------hhcCCCCcHHHHHH
Q 001414 560 AAIAKARN--NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----------SDATDGKDSYATLS 627 (1082)
Q Consensus 560 a~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~~~~d~~~~~~ 627 (1082)
+.+....| +.-.|..+|+.. +.....-..+|.+.|.+.+|++.--+. -.+.+..|+..+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 22222222 223344444432 111112233455666666665542211 12345567766666
Q ss_pred hHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC--
Q 001414 628 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-- 705 (1082)
Q Consensus 628 Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-- 705 (1082)
-++. +... .+|++|+.++-.+-+. .-|.-++...+..-..++-+.+-- ..++.++
T Consensus 1086 cadF-F~~~------------~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~mTp-~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1086 CADF-FENN------------QQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELMTP-TKDDMPNEQ 1142 (1416)
T ss_pred HHHH-HHhH------------HHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhcCc-CcCCCccHH
Confidence 6666 5555 7788887776443322 112222333333333332222211 0011111
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 706 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
....++..+|.+++++|.|..|-+-|.++=.+
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 23457889999999999999999888877543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-08 Score=103.73 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH---HHH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD---AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 591 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 591 (1082)
.+..++..|..+...|+++.|+..|+.++..+|.... +.+.+|.++...++++.|+..+++.++.+|+++. +++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 5566777777777778888888888888887776643 3477777778888888888888888887777654 455
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHH
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 671 (1082)
.+|.++...+.- .|......... .. .......|+..|+.+++..|+..++
T Consensus 111 ~~g~~~~~~~~~-----~~~~~~~~~~~-------------~r------------D~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 111 MRGLTNMALDDS-----ALQGFFGVDRS-------------DR------------DPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHhhhhcchh-----hhhhccCCCcc-------------cc------------CHHHHHHHHHHHHHHHHHCcCChhH
Confidence 555543332210 11111000000 00 1145678889999999999988665
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 750 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~L 750 (1082)
- +|...+..+.... ..--+.+|..|++.|.|..|+.-++.+++.|+..+. .++++.+
T Consensus 161 ~--------------~A~~rl~~l~~~l--------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 161 T--------------DATKRLVFLKDRL--------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred H--------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 4 4444444444432 334468899999999999999999999999887665 8899999
Q ss_pred HHHHHHhccHHHHHHHHHHH
Q 001414 751 ARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 751 a~~~~~~g~~~eA~~~l~~a 770 (1082)
+.+|...|..++|..+....
T Consensus 219 ~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 219 ENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 99999999999998877544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-08 Score=103.60 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhh
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 594 (1082)
.+..++..|..+...|++.+|+..|+.++..+|.. ..+.+.+|.++...|++..|+..++..+...|+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------
Confidence 34555666666666666666666666666655543 455556666666666666666666666666555543
Q ss_pred hhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHH
Q 001414 595 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 674 (1082)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 674 (1082)
-.++++.+|.+ ++....... ......+...+|+..|+.++...|++.++.
T Consensus 78 --------------------------~~~A~Y~~g~~-~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-- 127 (203)
T PF13525_consen 78 --------------------------ADYALYMLGLS-YYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE-- 127 (203)
T ss_dssp --------------------------HHHHHHHHHHH-HHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH--
T ss_pred --------------------------hhhHHHHHHHH-HHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH--
Confidence 11233333333 322211110 001112678899999999999999987665
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHH
Q 001414 675 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLART 753 (1082)
Q Consensus 675 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~La~~ 753 (1082)
+|...+..+.+.. ..--+.+|..|++.|.|..|+..|+.+++.|+..+. ..++..++.+
T Consensus 128 ------------~A~~~l~~l~~~l--------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 128 ------------EAKKRLAELRNRL--------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 4555555554433 344567899999999999999999999999876665 7899999999
Q ss_pred HHHhccHHHHHH
Q 001414 754 HYEAEQWQDCKK 765 (1082)
Q Consensus 754 ~~~~g~~~eA~~ 765 (1082)
|.+.|....|..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 999999885543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-09 Score=113.63 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=107.1
Q ss_pred HHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHh
Q 001414 417 GELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 495 (1082)
Q Consensus 417 a~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1082)
+.++ ..|++++|+..+... ...+.......++...++++.|.+.++.+..
T Consensus 109 A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~------------------------- 159 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQ------------------------- 159 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------
Confidence 3344 555555555555442 3456666667788888999999888887755
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHH
Q 001414 496 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH--DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 573 (1082)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~ 573 (1082)
...+...+....+.+....| .+.+|..+|+++....|..+..++.++.+...+|++++|.
T Consensus 160 ------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 160 ------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp ------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred ------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 23333333333333444444 5888999999988887888888888999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHhhhhhhcccch-HHHHHHHHHhhhcCCC
Q 001414 574 ELVNEALKVNGKYPNALSMLGDLELKNDDW-VKAKETFRAASDATDG 619 (1082)
Q Consensus 574 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~ 619 (1082)
..+.+++..+|++++++.+++.+....|+. +.+.+++.++....|.
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 999999999999999999998888888887 5566677666666666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=115.28 Aligned_cols=259 Identities=15% Similarity=0.117 Sum_probs=167.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
...++..|+|..++..++ ....+|. .......+++++..+|++...+.-....- .|.. .....++..+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l--~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL--QAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC--HHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH--HHHHHHHHHHhCccch
Confidence 345677888888887666 3233332 24566777888888888877665443311 3333 2334444444444455
Q ss_pred HHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001414 214 GKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1082)
+.++..++..+.... .++...+..|.++...|+ +++|+..+.+. .+.........++...++++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666655443221 244455566677777777 77777777643 56677777778888888888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 292 ETALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1082)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1082)
..+.+.. .+..-+....+.+....| .+.+|...|+.+.. ..+..+..+.+++.+++.+|+|++|...+..++
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8776432 232233333333444444 58889999988765 445567778889999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q 001414 370 EIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~l~kal~~~p~~~~~ 412 (1082)
..+|++++++.+++.+....|+. +.+.+++.++...+|.++..
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 88899999999999888888887 66677888877788887643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-08 Score=103.02 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=131.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIR 200 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~ 200 (1082)
..+..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|..|+..|++.++..|++ .+.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356678888999999999999999999999999988554 4888999999999999999999999998887 35567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1082)
+.+|.|+..++.- .|......++. ..+......|+..|+..++..|+...+-...-.+
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl--- 167 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL--- 167 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---
Confidence 7777776554311 11111111110 0111224456666666666666554221110000
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1082)
..+...+ +.--+.+|..|.+.|.|.-|+.-++.++...+..+....+++.++.+|...|..+.
T Consensus 168 --------~~l~~~l---------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 168 --------VFLKDRL---------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred --------HHHHHHH---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 0011111 12334667777777777777777777777777777777777777788888887777
Q ss_pred HHHHHHHH
Q 001414 361 ALTNFEKV 368 (1082)
Q Consensus 361 A~~~~~~~ 368 (1082)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 77665543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=110.86 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
|....++++.|..++..|.++.|+..++..+...|++ +..+...+.++...|+..+|.+.+++++.++|.....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7888899999999999999999999999999999998 777888999999999999999999999999999998999999
Q ss_pred HHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001414 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1082)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 318 (1082)
..++..|+ +.+|+..++..+..+|+++..|..|+..|...|+..++.. ..+..|+..
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHHHhC
Confidence 99999999 8899999999999999999999999999999998765443 456677888
Q ss_pred CCHHHHHHHHHHHHHhh
Q 001414 319 GDYEKAGLYYMASVKEI 335 (1082)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1082)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998854
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.7e-08 Score=102.01 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=110.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhh-----cCC-----CCCHHHHHHHHH
Q 001414 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTK-----AGE-----EVPIEVLNNIGV 450 (1082)
Q Consensus 382 la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~-----~~~-----~~~~~~~~~la~ 450 (1082)
....|.+..+..-+..-.+.+.....+.+.+.+..+..+ ..|++.+|.+.+... .+. -....+++++|+
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 334445555666666666666666666667777777766 778888887777761 111 113346799999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001414 451 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 530 (1082)
Q Consensus 451 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 530 (1082)
++++.|.|.-+..+|.+++.... ..+.. .+.......-.......++|+.|..|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c------------------~qL~~-------g~~~~~~~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSC------------------SQLRN-------GLKPAKTFTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHH------------------HHHhc-------cCCCCcceehhcccchhhHHhhhHHHH
Confidence 99999999999999999996210 01100 000000000022346789999999999
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 565 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 565 (1082)
..|++-.|.+.|.++...+-.++..|++++.+++.
T Consensus 347 h~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 347 HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=102.09 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1082)
.+..++..|..++..|+|.+|+..|+.++...|.+ ..+.+.+|.+++..|+|..|+..|++.+...|++ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35567778888888888888888888888877765 5677888888888888888888888888888776 344566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1082)
.+|.+++.+..-. + ....+.....+|+..|+..+...|+++.+-...-.
T Consensus 84 ~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~----- 132 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR----- 132 (203)
T ss_dssp HHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH-----
T ss_pred HHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH-----
Confidence 6666665441100 0 00112233677888888888888876533221110
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
+..+...+ +.--+.+|..|...|.|..|+..++.+++..+..+....++..++.+|..+|....|
T Consensus 133 ------l~~l~~~l---------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 133 ------LAELRNRL---------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ------HHHHHHHH---------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ------HHHHHHHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 01111111 234566788888889999999999998887777676677888888889888888754
Q ss_pred H
Q 001414 362 L 362 (1082)
Q Consensus 362 ~ 362 (1082)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.4e-08 Score=103.91 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=123.1
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1082)
Q Consensus 193 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1082)
|.. ...+++.+..++..|.++.|+..+...+...|+|+..+...+.+++..++ ..+|.+.+++++.++|+.+.+..
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 555 56788888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 001414 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1082)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1082)
.+|..|+..|++.+|+..+...+.. .|.++..|..++++|..+|+..+|.. ..+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHH
Confidence 8888888888888888888887743 47777888888888888887665533 345566
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001414 353 LKLGDFRSALTNFEKVLEIY 372 (1082)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1082)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 67788888888888887765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-05 Score=84.15 Aligned_cols=433 Identities=12% Similarity=0.044 Sum_probs=252.5
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001414 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1082)
Q Consensus 118 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1082)
++-++.+|.+..+|+.+..-+-.+ -+++....|++.+...|..+.+|...+...+..++|+....+|.++|..--+. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 566789999999999998877666 99999999999999999999999999999999999999999999999865443 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHh---hCCCCHHHHHHHHHHHHHhc---c---HHhHHHHHHHHHHHHHhC
Q 001414 198 AIRLGIGLCRYKLGQLGKARQA----FQRALQ---LDPENVEALVALAVMDLQAN---E---AAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~----~~~al~---~~p~~~~a~~~la~~~~~~~---~---~~~~~~A~~~~~~al~~~ 264 (1082)
-+...+..+....|....+... |+-++. .++.....|...+..+..-. . ..+++.....|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 3334455555555655554433 333333 35566666776665544321 1 123555666777776544
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC----C--
Q 001414 265 PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----K-- 337 (1082)
Q Consensus 265 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~-- 337 (1082)
-.+.. .|.... .|+..+ ..+. ..-.+--....|..|...+++...... .
T Consensus 168 m~nlEkLW~DY~-------~fE~~I---N~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWKDYE-------AFEQEI---NIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHHHHH-------HHHHHH---HHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 33322 111110 011111 0000 000011112234444444444332110 0
Q ss_pred --CCCC-------hhhHHHHHHHHHHc------CC-H-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------
Q 001414 338 --PHEF-------IFPYYGLGQVQLKL------GD-F-RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--------- 391 (1082)
Q Consensus 338 --~~~~-------~~~~~~la~~~~~~------g~-~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------- 391 (1082)
+|.. +..|.++...-... |. . ..-.-.|++++..-+-.+++|+..+..+...++
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~ 303 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVP 303 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccc
Confidence 0000 00121111111110 00 0 122334666666667777777766655555544
Q ss_pred -----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcC---CHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHcCCHH
Q 001414 392 -----IEKAQELLRKAAKID-PRDAQAFIDLGELL-ISS---DTGAALDAFKT--KAGEEVPIEVLNNIGVIHFEKGEFE 459 (1082)
Q Consensus 392 -----~~~A~~~l~kal~~~-p~~~~~~~~la~~~-~~~---~~~~Al~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~ 459 (1082)
.+++..+|++++..- ..+...++.++..- ... ..+.....+.+ ........-++..+...-.+..-..
T Consensus 304 ~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 304 DAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLK 383 (656)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHH
Confidence 667777887776543 22333444444332 111 24444555555 1222233345555555666666677
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHH
Q 001414 460 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 539 (1082)
Q Consensus 460 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 539 (1082)
.|..+|.++-+.. ..+..+.+...+.. |.-.++..-|.
T Consensus 384 aaR~iF~kaR~~~-----------------------------------------r~~hhVfVa~A~mE-y~cskD~~~Af 421 (656)
T KOG1914|consen 384 AARKIFKKAREDK-----------------------------------------RTRHHVFVAAALME-YYCSKDKETAF 421 (656)
T ss_pred HHHHHHHHHhhcc-----------------------------------------CCcchhhHHHHHHH-HHhcCChhHHH
Confidence 7888888776532 12223333333333 33458888999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--cCC-ChHHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001414 540 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NGK-YPNALSMLGDLELKNDDWVKAKETFRAASDA 616 (1082)
Q Consensus 540 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 616 (1082)
.+|+..+..+++.+..-+.....+...|+-..|..+|++++.. .|+ ...+|..+...-..-|+....++.-++....
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999888888777888888888888899999998876 222 2357777777777788887777776665554
Q ss_pred CC
Q 001414 617 TD 618 (1082)
Q Consensus 617 ~~ 618 (1082)
.|
T Consensus 502 f~ 503 (656)
T KOG1914|consen 502 FP 503 (656)
T ss_pred cc
Confidence 44
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=115.55 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
+...|..++..|+|+.|+..|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ +.+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
|+++.|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877665444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=95.50 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001414 155 LEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1082)
Q Consensus 155 l~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1082)
.... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+.+|.+++.++|+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 4456 6778889999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC
Q 001414 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1082)
++.+|.+++..|+ ...|...|+.++....
T Consensus 106 ~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDN---VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999988763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-05 Score=86.97 Aligned_cols=414 Identities=14% Similarity=0.133 Sum_probs=196.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVPAL 165 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~a~ 165 (1082)
-+++|..|..+++. +...|.....|..++.+.+..|++--|..+|..+-. ...+-...|
T Consensus 456 d~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fy 534 (1636)
T KOG3616|consen 456 DDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFY 534 (1636)
T ss_pred ccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHH
Confidence 46889999988774 567788888899999988888888777777653311 112223445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 001414 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1082)
..+|.+.+.-++|.+|..+|-. .+... -.+| .|..+.++++|+..-+-. -.|.........-..++..|
T Consensus 535 kvra~lail~kkfk~ae~ifle---qn~te-----~aig-my~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 535 KVRAMLAILEKKFKEAEMIFLE---QNATE-----EAIG-MYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred HHHHHHHHHHhhhhHHHHHHHh---cccHH-----HHHH-HHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhcC
Confidence 5555555555666666655532 11111 1111 234444555555433210 11211111111111122222
Q ss_pred cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---------CCCCchHHHHHHHHHHH
Q 001414 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---------HGPTKSHSYYNLARSYH 316 (1082)
Q Consensus 246 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---------~~~~~~~~~~~la~~~~ 316 (1082)
+ -.+| -++...+...+ ....+|.+.|...+|......--.... ..-...+.|-..|.+|.
T Consensus 604 q---d~ka-------~elk~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfe 672 (1636)
T KOG3616|consen 604 Q---DEKA-------AELKESDGDGL-AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFE 672 (1636)
T ss_pred c---hhhh-------hhhccccCccH-HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHH
Confidence 2 1111 11111111111 112334444444443332211000000 00011233444455555
Q ss_pred HcCCHHHHHHHHHHHH------H--hhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 317 SKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 317 ~~g~~~~A~~~~~~al------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
+..++++|+++|.+.- + .+.-+...+..--..|.-+...|+++.|+..|-.+-- +.........
T Consensus 673 ki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~ 744 (1636)
T KOG3616|consen 673 KIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIG 744 (1636)
T ss_pred HhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhh
Confidence 5666666666665431 1 1101111222233456666677777777777654411 1122223334
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 467 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 467 (1082)
...+.+|+.++..+-.... ....|-.++..| ..|+++.|..+|.. .........+|-+.|++..|.++-.+
T Consensus 745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e-------~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTE-------ADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHh-------cchhHHHHHHHhccccHHHHHHHHHH
Confidence 4567777777665543321 122344556666 77777777777765 22334445566677777777766665
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001414 468 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 547 (1082)
Q Consensus 468 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 547 (1082)
... +......|...+.-+...|++.+|.++|-.+-
T Consensus 817 ~~~--------------------------------------------~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 817 CHG--------------------------------------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred hcC--------------------------------------------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 533 11223444455555666676666666553321
Q ss_pred hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC-hHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 548 ~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
.|+. -..+|-+.|.++.-+.+..+ ..|+. .+.+..++.-|...|+...|...|-++
T Consensus 852 -~p~~------aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 852 -EPDK------AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -CchH------HHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 1221 12344455555554444433 22222 224555566666666666666665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=91.86 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 202 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~ 202 (1082)
+..++.+|..++..|++++|+..|..++..+|++ ..+++.+|.+++..|++..|+.+|+.++...|+. .+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 5688999999999999999999999999998885 2567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1082)
+|.++..+|+++.|+..|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.6e-08 Score=109.18 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 001414 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1082)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1082)
+...|..++..|+|..|+.+|.+++..+|++ ..+++.+|.++..+|+++.|+..+.+++.++|.++.+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
|+ +..|+..|++++.++|.++.+...++.+..
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99 999999999999999999988887766643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-08 Score=100.00 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~ 186 (1082)
....+.-++.-+..||+++..|..+|.+|+..|++..|...|.+++++.|+|+..+.++|.+++.+. .-.++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4566666777778888888888888888888888888888888888888888888888888776653 3467778888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1082)
+++..+|.+ ..+++.+|..++..|+|.+|...|+.++...|.+.
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 888888888 67778888888888888888888888888777544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-06 Score=105.66 Aligned_cols=230 Identities=15% Similarity=0.188 Sum_probs=190.8
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 001414 16 RVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY 95 (1082)
Q Consensus 16 ~i~~~~l~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~ 95 (1082)
++|+..-|.+++|+..++...|.+.=.|+..-..+...+..+.|.++.++|+..- +|. ...+...+|..+-.+-..
T Consensus 1434 ~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI---N~R-EeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1434 ERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI---NFR-EEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred hcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC---Ccc-hhHHHHHHHHHHHhHHHh
Confidence 3667778999999999999999999999999999999999999999999998652 122 233566666655555555
Q ss_pred hchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1082)
Q Consensus 96 ~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1082)
.|.-+ .-...|++|.+... .-..+..+.-+|...+++++|.++|+.+++...+....|..+|..++++
T Consensus 1510 yG~ee-----------sl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1510 YGTEE-----------SLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred hCcHH-----------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 55333 45667777766542 3456778889999999999999999999998888899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHH
Q 001414 176 GRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1082)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~ 254 (1082)
.+-+.|..++.+|++.-|.. -..+....|.+-++.|+.+.++.+|+-.+...|...+.|..+...-...++ .....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHH
Confidence 99999999999999999983 145566678889999999999999999999999999999999999999888 88888
Q ss_pred HHHHHHHHhC
Q 001414 255 EKMQRAFEIY 264 (1082)
Q Consensus 255 ~~~~~al~~~ 264 (1082)
.+|++++.+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 8999988765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-07 Score=89.68 Aligned_cols=105 Identities=30% Similarity=0.332 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
+++.+++-.|.+|-.+|-.. -|.--|.+++.+.|.-+.++..+|..+...|+|+.|...|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 45666666666676666655 7777788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1082)
+--+.+.+|..++--|+|.-|..-+.+..+.+|++|
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 888888888888888888888888888888888873
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00034 Score=75.71 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHH----
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL---- 747 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~---- 747 (1082)
+..|.....++++.+|...+.+.++...- +.+.-..-.+..||++....|+..++.++..-++......+|..+.
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
Confidence 34566666788888888888888876521 1111133456788999999999999999998888765556662222
Q ss_pred HHHHHHHHHhcc--HHHHHHHH
Q 001414 748 LYLARTHYEAEQ--WQDCKKSL 767 (1082)
Q Consensus 748 ~~La~~~~~~g~--~~eA~~~l 767 (1082)
..+-..|...|+ .....+.+
T Consensus 529 si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 529 SILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHhCcchhhHHHHHH
Confidence 234455556666 44444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-06 Score=85.57 Aligned_cols=258 Identities=11% Similarity=0.135 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhh
Q 001414 412 AFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 491 (1082)
Q Consensus 412 ~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 491 (1082)
-++.+-..+..|.|..++....+....+...+....+...|...|.+...+.-....
T Consensus 11 ~LF~iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----------------------- 67 (299)
T KOG3081|consen 11 ELFNIRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEG----------------------- 67 (299)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccc-----------------------
Confidence 344444555667777777776664444456666666777777777654432222111
Q ss_pred hHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH-HHHHHHhCCC-hHHHHHHHHHHHHHhcCH
Q 001414 492 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL-YRLILFKYQD-YVDAYLRLAAIAKARNNL 569 (1082)
Q Consensus 492 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~-~~~a~~~la~~~~~~g~~ 569 (1082)
. .....+...++..+..-++.+.-+.- ++.+...... +......-+.+++..|++
T Consensus 68 ----------------------~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~ 124 (299)
T KOG3081|consen 68 ----------------------K-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDF 124 (299)
T ss_pred ----------------------c-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCCh
Confidence 0 11223333444544444554444433 3333333322 234455556678888888
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhh
Q 001414 570 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 649 (1082)
Q Consensus 570 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~ 649 (1082)
++|....... .+.++...-..++.++.+.+-|...++++.+.. +...+..|+.. |....... .
T Consensus 125 deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~a-wv~la~gg--------e 187 (299)
T KOG3081|consen 125 DEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQA-WVKLATGG--------E 187 (299)
T ss_pred HHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHH-HHHHhccc--------h
Confidence 8888877762 345666677778888888888888888887765 34556667776 66653332 4
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001414 650 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 729 (1082)
Q Consensus 650 ~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~ 729 (1082)
.+..|.-+|+..-...|.++...++.+.+...+++|++|..+++.++...+ .+|.++.|+..+-...|...++..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHH
Confidence 577888888888887788888888888888888888888888888888776 678888888888888887777776
Q ss_pred HHHHHHHh
Q 001414 730 MYQNCLRK 737 (1082)
Q Consensus 730 ~~~~al~~ 737 (1082)
-+-.-++.
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 66555555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=90.16 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=107.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
+..++.+|..|-..|-+.-|.--|.+++.+.|.-+.++..+|..+...|+|+.|.+.|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHH
Q 001414 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1082)
+--|++.-|...|.+-.+.+|+++---..|-..-... + ..+|..-+.+-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-d---P~~A~tnL~qR 192 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-D---PKQAKTNLKQR 192 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-C---HHHHHHHHHHH
Confidence 9999999999999999999999875433332222222 2 55555544433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.1e-08 Score=90.55 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=100.0
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001414 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1082)
Q Consensus 120 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1082)
+..+.+......+..|.-++..|++++|..+|..+.-.+|.|+..|+++|.++..+++|++|+..|..+..+++++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4455566677889999999999999999999999999999999999999999999999999999999999999988 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
.+..|.|+..+|+...|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999999998 4553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=88.26 Aligned_cols=109 Identities=28% Similarity=0.364 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1082)
..++.+|..+...|++++|+..|.+++...+.++....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5678888889999999999999999887544444446678889999999999999999999999888775 5788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001414 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 383 a~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
|.++...|++++|+.++.+++...|++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999999988776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=93.05 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001414 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1082)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1082)
|..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.. ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4566788999999999999999999999999887653 4688999999999999999999999999999998 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCC
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1082)
.+|.++...|+...+...+..++.. +.+|+.++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666665432 677888888888888876
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00091 Score=75.49 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHH----HHHHHhcC-CchHHHHHHH---------HHHHHh-cCCCCCCchHHHHH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGA----GVVLAEKG-QFDVSKDLFT---------QVQEAA-SGSVFVQMPDVWIN 713 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~l----a~~~~~~~-~~~~A~~~~~---------~~~~~~-p~~~~~~~~~~~~~ 713 (1082)
|+++.|...|-.+++++.-|+...... -.-+.+.| ..++|..+|- ++.+.. |+ ..++++.-
T Consensus 1009 gk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~----~l~dv~tg 1084 (1636)
T KOG3616|consen 1009 GKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED----LLADVLTG 1084 (1636)
T ss_pred cchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh----hhHHHHhh
Confidence 888888888888888877665544322 11112222 4444544442 222222 21 24667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 001414 714 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 793 (1082)
Q Consensus 714 la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~ 793 (1082)
.+.-....|++.+|..++-++ +.++... +.|...+-|..|+.+.+.-+ | ..++.+...+-.
T Consensus 1085 qar~aiee~d~~kae~fllra-----nkp~i~l-----~yf~e~~lw~dalri~kdyl---p------~q~a~iqeeyek 1145 (1636)
T KOG3616|consen 1085 QARGAIEEGDFLKAEGFLLRA-----NKPDIAL-----NYFIEAELWPDALRIAKDYL---P------HQAAAIQEEYEK 1145 (1636)
T ss_pred hhhccccccchhhhhhheeec-----CCCchHH-----HHHHHhccChHHHHHHHhhC---h------hHHHHHHHHHHH
Confidence 777778888888887776544 2233221 23456778888887765332 2 234445555555
Q ss_pred hhhhccCCCHHHHHHH------HHHHHHHHHHHHHH
Q 001414 794 STLQKTRRTADEVRST------VAELENAVRVFSHL 823 (1082)
Q Consensus 794 ~~l~~~~~~~~~~~~a------~~~l~~A~~~f~~l 823 (1082)
+.+++--|.++-.... .+++..|...+-.+
T Consensus 1146 ~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1146 EALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred HHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 6677766666544333 33444555555555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=88.09 Aligned_cols=317 Identities=17% Similarity=0.130 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHhccHHhHHHHHHHHHHHH----HhCCC--CHHH
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA---VMDLQANEAAGIRKGMEKMQRAF----EIYPY--CAMA 270 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la---~~~~~~~~~~~~~~A~~~~~~al----~~~p~--~~~~ 270 (1082)
.+..|.-++...++.+|+..|.+.+..-.+...-+..+| .+....|. +.+++.+--..+ ..+.. ...+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~---y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGR---YKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666654333322233333 23333333 433333222111 11111 1133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC---ChhhH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE---FIFPY 345 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~ 345 (1082)
+..++..+-..-++.+++.+....+......+ .-......++.++...+.|++++++|+.+++......+ ...++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 44445555555555555555555443332222 12244555666666666666666666666653221111 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC----Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYP----DN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~ 415 (1082)
..||..+....++++|+-+..++..+.. ++ .-+++.++..+...|..-.|.++.+.+.++.-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~------- 238 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ------- 238 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH-------
Confidence 5566666666666666666665555421 11 124455555555666666666666555443210
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHh
Q 001414 416 LGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 495 (1082)
Q Consensus 416 la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1082)
..+.+.....+..+|.+|...|+.+.|..-|+.+...-.. ++
T Consensus 239 -------------------~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~---~g---------------- 280 (518)
T KOG1941|consen 239 -------------------HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS---LG---------------- 280 (518)
T ss_pred -------------------hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh---hh----------------
Confidence 1122233455677899999999999999999998762100 00
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHhCCC------hHHHHHHHHHHHH
Q 001414 496 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT-----VAASVLYRLILFKYQD------YVDAYLRLAAIAK 564 (1082)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~~l~~~p~------~~~a~~~la~~~~ 564 (1082)
..-....++...|.++....-. -.|+++-.++++.... ....+.+++.+|.
T Consensus 281 ------------------drmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 281 ------------------DRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 0112334455555555443333 3377777777664432 2567888999999
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 001414 565 ARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 565 ~~g~~~eA~~~~~~al~~ 582 (1082)
..|.-++-...+..+-+.
T Consensus 343 s~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 343 SKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hccchhHHHHHHHHHHHH
Confidence 998877766666654443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-06 Score=85.36 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH---HHH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 591 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 591 (1082)
.+..+++-|......|++++|+..|+.+...+|.. ..+.+.++.++.+.+++++|+..+++.+.+.|.+++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46678888888888888888888888888887755 567777888888888888888888888888887776 333
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHH
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 671 (1082)
..|.+ ++.......+ .......|+..|+.++...|++.++
T Consensus 113 lkgLs------------------------------------~~~~i~~~~r----Dq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 113 LKGLS------------------------------------YFFQIDDVTR----DQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHH------------------------------------HhccCCcccc----CHHHHHHHHHHHHHHHHHCCCCcch
Confidence 33333 1111111111 1145677888899999999998877
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 750 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~L 750 (1082)
-.. ...+..+.... ..--..+|..|++.|.+..|+.-++.+++.++..+. .+.+..+
T Consensus 153 ~dA--------------~~~i~~~~d~L--------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l 210 (254)
T COG4105 153 PDA--------------KARIVKLNDAL--------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL 210 (254)
T ss_pred hhH--------------HHHHHHHHHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHH
Confidence 632 22222222211 223357789999999999999999999999766544 7889999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCc
Q 001414 751 ARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 751 a~~~~~~g~~~eA~~~l~~al~~~p~~~ 778 (1082)
..+|+..|-.++|.++-.-.-...|+++
T Consensus 211 ~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 211 EEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999999999999988776666677765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.5e-07 Score=97.99 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 109 ~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
....|+.+|.+++ .++|..+.++..++.|++.. ....+|....++++..+|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999999998876 23678889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HH-HHHHhccHHhHHHHH
Q 001414 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-AV-MDLQANEAAGIRKGM 254 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-a~-~~~~~~~~~~~~~A~ 254 (1082)
+++.|+..|++++.++|+. +.+++..|..+...|+.+.|...++++++++|....+-... .. +|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 88999999999999999999999999999999766553332 22 444443 67777
Q ss_pred HHHHHHHH
Q 001414 255 EKMQRAFE 262 (1082)
Q Consensus 255 ~~~~~al~ 262 (1082)
..|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77655433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00047 Score=75.89 Aligned_cols=188 Identities=14% Similarity=0.183 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHcCCChH-HHHHhhhhhhcccchHHHHHH
Q 001414 535 TVAASVLYRLILFKY-QDYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 609 (1082)
Q Consensus 535 ~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~ 609 (1082)
.+++..+|+.++..- ..+...++.++..-...- ..+.....+++++.+...++. +|..+-++-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 667778888877633 233444455544433322 366777888888887655554 566666666666778899999
Q ss_pred HHHhhhcCC-CCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Q 001414 610 FRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 688 (1082)
Q Consensus 610 ~~~al~~~~-~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A 688 (1082)
|.++-+..- .++.++..++-. |+.+ ++..-|..+|+-.++..++.+...+.....+...++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 999887542 246666655544 5666 8999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 001414 689 KDLFTQVQEAA-SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 739 (1082)
Q Consensus 689 ~~~~~~~~~~~-p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~ 739 (1082)
..+|++++... |- .....+|..+-..-..-|+...++++=++....|+
T Consensus 455 R~LFEr~l~s~l~~---~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVLSA---DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccCCh---hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999872 10 13456888887777888999888888888777765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=83.73 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~ 209 (1082)
+++.+|.+++..|++++|+..|..++...|.+..+++.+|.++...|++++|+.+|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467778888888888888888888888888887888888888888888888888888888888877 5677788888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001414 210 LGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1082)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877766
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-08 Score=80.76 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1082)
++..|..+|.+++..|++++|+..|.+++..+|+++.+++.+|.++...| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666666666666666666666666666666666666666666 46666666666666555
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.8e-07 Score=92.18 Aligned_cols=118 Identities=22% Similarity=0.166 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHH
Q 001414 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
+.-+.-++.-+..+|++ ..-|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++.+.+.....++...|.
T Consensus 139 ~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34444455556666666 55566666666666666666666666666666666666666666665555444556666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1082)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1082)
+++..+|.++.+++.||..++..|+|.+|...++.++..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=97.56 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HH
Q 001414 668 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 745 (1082)
Q Consensus 668 ~~~a~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~ 745 (1082)
+....+..|..+ ...|++++|+..|++++...|++.+ .+.+++.+|.+|+..|+++.|+..|+.+++.|+.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345556666665 5679999999999999999996532 3689999999999999999999999999999876544 99
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcc
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~ 779 (1082)
+++.+|.++...|++++|+.+|++++..+|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998864
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-07 Score=95.11 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=94.1
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001414 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1082)
Q Consensus 128 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1082)
...++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|++++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 56799999999999999999988 5799999999999999999999999999998876 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1082)
.+|.++..+|+++.|+..|++++...|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8999999999999999999999999998776433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-07 Score=94.60 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 750 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~L 750 (1082)
.+..|.-+...|+|..|...|...+...|++.+ .+.++|.||.+++.+|+|..|...|..+++.+|.++- |+.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 667788888999999999999999999998764 5789999999999999999999999999999877655 8999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcchh
Q 001414 751 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 751 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 781 (1082)
|.+....|+.++|..+|+++++.+|+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999987654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-08 Score=84.48 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001414 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1082)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~ 218 (1082)
+|+|+.|+.+|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777777774 345566677777777777777777777 5566655 4556666777777777777777
Q ss_pred HHHHH
Q 001414 219 AFQRA 223 (1082)
Q Consensus 219 ~~~~a 223 (1082)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=96.37 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=115.5
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001414 132 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 196 (1082)
Q Consensus 132 ~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~ 196 (1082)
+.+|...+..+. ...|+.+|.+++ ..+|....++-.+|.|++.. ....+|+....+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 677877777764 678889999999 88999999999999988765 23467888889999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHH
Q 001414 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 197 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
+.++..+|.+++..|+++.|...|++++.++|+.+.+|+..|.+....|+ .++|+..+.++++++|....
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhH
Confidence 78889999999999999999999999999999999999999999999998 99999999999999987653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=98.20 Aligned_cols=123 Identities=21% Similarity=0.171 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hhh-----hHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~-~~~-----~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1082)
..-..|..|++.|+|..|...+++++..-.... ++. ....++.++.+|+.+|+++..+. .|+.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai~ 278 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAIE 278 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHHH
Confidence 345678899999999999999999864311100 000 01122333444444444443333 4444
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1082)
.+++++..+|+|+.+++.+|.+++..|+|+.|+..|+++++..|+|-.+...+..+..+.
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444443333
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0011 Score=71.85 Aligned_cols=428 Identities=15% Similarity=0.113 Sum_probs=237.4
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHH
Q 001414 41 DLWLIIAREYFKQG--KVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g--~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~ 118 (1082)
...+.+|..+..+| ++..+++.++......++. .-.+..+..||.+.+..- .+++.|...++
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~------~veart~LqLg~lL~~yT----------~N~elAksHLe 71 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF------LVEARTHLQLGALLLRYT----------KNVELAKSHLE 71 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH------HHHHHHHHHHHHHHHHHh----------ccHHHHHHHHH
Confidence 35677899999999 9999999999986654421 123344555666665543 34557888888
Q ss_pred HHHhcC---CCCh----hhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHH
Q 001414 119 KASRID---MHEP----STWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 119 ~al~~~---p~~~----~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
++..+. |+.. .+...++.+|.+.. .+..|...+.+++....+++ ..++.+|.+..-..++..|++.+.
T Consensus 72 kA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 72 KAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 876543 4332 34556788888877 78999999999999876654 456889999999999999999854
Q ss_pred HHHH-hCCCChHHHHHH------HHHHHHHcCCHH---HHHHHHHHHHhhCCCCH---HH----HHHHHHH-HHHhccHH
Q 001414 187 RALQ-VHPSCPGAIRLG------IGLCRYKLGQLG---KARQAFQRALQLDPENV---EA----LVALAVM-DLQANEAA 248 (1082)
Q Consensus 187 ~al~-~~p~~~~~~~~~------lg~~~~~~g~~~---~A~~~~~~al~~~p~~~---~a----~~~la~~-~~~~~~~~ 248 (1082)
-... .+|-+ ..++. .+.++...-+.. .+......+.+....++ +. +..+-.. |...|+..
T Consensus 152 vga~sAd~~~--~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 152 VGAESADHIC--FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred ccccccchhh--hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 3221 12322 22222 233333333333 33333344433322222 21 2222222 33345433
Q ss_pred hHHHHHHHHHHHHHhC-C-----------C-CH-----------HHHHHHH--HHHHHcCCHHHHHHHHHHHHhccCCCC
Q 001414 249 GIRKGMEKMQRAFEIY-P-----------Y-CA-----------MALNYLA--NHFFFTGQHFLVEQLTETALAVTNHGP 302 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~-p-----------~-~~-----------~~~~~la--~~~~~~g~~~~A~~~~~~~l~~~~~~~ 302 (1082)
....+++.++..+..- + . .+ .++..+. ..-...|-+++|.++-++++...+..+
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555544321 1 0 01 1111111 111234556666666666664432222
Q ss_pred Cc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHHHcCCHHHHHHH
Q 001414 303 TK-----------SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-------FIFPYYGLGQVQLKLGDFRSALTN 364 (1082)
Q Consensus 303 ~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~ 364 (1082)
.. ...+-.++.+-.-.|++.+|+.....+..-....|. ....++.+|......|.++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 11 112233445555667777777666666553333333 123345556666666666666666
Q ss_pred HHHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC
Q 001414 365 FEKVLEIYPD-N--CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP 441 (1082)
Q Consensus 365 ~~~~l~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~ 441 (1082)
|..+.+.-.. + ..+..++|.+|.+.|+-+.-.+.++. +.|.+...+..- ...
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq----------------------~l~ 444 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ----------------------RLE 444 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH----------------------HHH
Confidence 6666654321 1 12334556666665554443333332 233321111000 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
..+++..|...+..+++.+|...+.+.++... .-.......-.
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-------------------------------------aed~~rL~a~~ 487 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-------------------------------------AEDLNRLTACS 487 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-------------------------------------hhhHHHHHHHH
Confidence 35677778889999999999999999887421 00011123445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFK 548 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 548 (1082)
+..++.++...|+..++.....-++..
T Consensus 488 LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccchHHHH
Confidence 667788888888888888877776653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-08 Score=79.49 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 228 (1082)
++..|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677788888888888888888888888888877 677888888888887 68888888888887776
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-05 Score=85.48 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=96.0
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCC--------ChhhHHHHH
Q 001414 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--------FIFPYYGLG 349 (1082)
Q Consensus 278 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~la 349 (1082)
|....+...+..-...++... .+.+.+.+..+..++..|++.+|.+.+...--. ..+. .-..+.++|
T Consensus 216 llq~~~Lk~~krevK~vmn~a---~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~--~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIA---QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH--KEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhc---CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc--cccCccccchhhhheeecCcc
Confidence 333344433433333333322 345577788888888888888888877654311 1111 122356788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---------C---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001414 350 QVQLKLGDFRSALTNFEKVLEI---------Y---------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~ 411 (1082)
.++++.|.|.-+..+|.++++. . ....+++++.|..|...|++-.|.++|.++....-.+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 8888888888888888888851 1 124578889999999999999999999999998888899
Q ss_pred HHHHHHHHH
Q 001414 412 AFIDLGELL 420 (1082)
Q Consensus 412 ~~~~la~~~ 420 (1082)
.|+.++.+.
T Consensus 371 lWLRlAEcC 379 (696)
T KOG2471|consen 371 LWLRLAECC 379 (696)
T ss_pred HHHHHHHHH
Confidence 999998866
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-07 Score=85.63 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=80.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCHH
Q 001414 140 AKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLG 214 (1082)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~lg~~~~~~g~~~ 214 (1082)
..|++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ...+++.++.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677777777777777777777 4566777777777777777777777777766544 2345667777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHH
Q 001414 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1082)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1082)
+|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 777777552 2333345556667777777776 77777766655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.9e-06 Score=83.40 Aligned_cols=190 Identities=19% Similarity=0.195 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1082)
.+..|+..|...++.|+|.+|...|+.+....|.+ ..+.+.++.++++.++|+.|+..+++-+.+.|+++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46688999999999999999999999999988866 57889999999999999999999999999998873 33444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1082)
..|.+++..= + ....+......|+..|+..+...|+...+-.....+-
T Consensus 113 lkgLs~~~~i---------------~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~--- 160 (254)
T COG4105 113 LKGLSYFFQI---------------D--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV--- 160 (254)
T ss_pred HHHHHHhccC---------------C--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH---
Confidence 5555522110 0 0112223366777777778888877654332221111
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 282 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
.+...+ +.--..+|+.|.+.|.+--|+..++.+++..+..+....++..+..+|..+|-.++|
T Consensus 161 --------~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 161 --------KLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred --------HHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 111111 122234556666666666666666666665544444555555666666666666655
Q ss_pred HHHH
Q 001414 362 LTNF 365 (1082)
Q Consensus 362 ~~~~ 365 (1082)
...-
T Consensus 224 ~~~~ 227 (254)
T COG4105 224 KKTA 227 (254)
T ss_pred HHHH
Confidence 5543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-06 Score=84.36 Aligned_cols=239 Identities=16% Similarity=0.118 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---ALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRL 201 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~~~~~~ 201 (1082)
..+..|.-++...++.+|+....+.+..-.+... .+-.+..+...+|.|.+++.+--..+...-+ ..-..+.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888887777765433322 2333445566777777776654333332211 1234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC--C----HHH
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN-----VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--C----AMA 270 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~ 270 (1082)
+++..+.++-++.+++.+-...+.+.... ..+...++..+...+. ++++++.|+.+++...+ + ..+
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~---fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV---FQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH---HHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 77777777777888877777776653322 2445566666666666 78888888888765432 2 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hCCCCC
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGP-------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKE---INKPHE 340 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~ 340 (1082)
+..|+.+|....++++|.-+..++........ ....+.+.++.++..+|..-.|.++.+++.+. .++.+-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66777777777777777777666654322211 12345677777888888888888888777652 123344
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
.......+|.+|...|+.+.|..-|+.+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 4555667788888888888888888877654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-07 Score=88.84 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 112 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
.+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444433 4566777788888888888888888887776543 3467777777778888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcC
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLG 211 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g 211 (1082)
+++...|.. ...+..+|.++..+|
T Consensus 97 ~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 877777777 555667777776443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-07 Score=89.70 Aligned_cols=108 Identities=24% Similarity=0.463 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001414 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1082)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1082)
+..+.+++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+..|.+++...|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45556788888888888888888888888886433333345678888888999999999999999998888888888888
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 001414 382 LGHIYVQLGQ--------------IEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 382 la~~~~~~g~--------------~~~A~~~l~kal~~~p~~ 409 (1082)
+|.++...|+ +.+|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 8888888777 566777777777777766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=86.52 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=91.2
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHH
Q 001414 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1082)
..++...+...+..++...+..+....+.+.+|.+++..|++++|...|..++...+.+.....+.+.++.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45666667777777776665555556778888888888888888888888888743222223456778888888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal 403 (1082)
+|+..+..+ ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888663 3334456778888889999999999888888764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-06 Score=91.61 Aligned_cols=106 Identities=16% Similarity=0.263 Sum_probs=80.5
Q ss_pred HHHHHHHHHhc-CCchHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-----H
Q 001414 672 ANGAGVVLAEK-GQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 744 (1082)
Q Consensus 672 ~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~ 744 (1082)
+..+|.+|... |++++|+..|+++.+..... .......++..+|.++...|+|++|++.|+++...+...+. .
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34678888888 99999999999999987321 11123557789999999999999999999999986433221 2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
..++..+.|++..|++..|...+.+....+|.-
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456678889999999999999999999999854
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=100.83 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=116.6
Q ss_pred CCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 001414 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRALQ 190 (1082)
Q Consensus 124 ~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~al~ 190 (1082)
-|.++.+ ++.+|..++..+. +..|+.+|+++++.+|++..++..++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555554 4667888877765 889999999999999999999998888776542 23455566666655
Q ss_pred h--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 191 ~--~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
+ .|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ +++|+..|.+++.++|.++
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5666 57788889999999999999999999999999 57899999999999999 9999999999999999988
Q ss_pred H
Q 001414 269 M 269 (1082)
Q Consensus 269 ~ 269 (1082)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-05 Score=78.89 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhH
Q 001414 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1082)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1082)
..+....++.+.|...|.+...+.-.... ......+...++.....-++.+.-+.-....+... ....+....
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~------~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~-~~~sn~i~~ 111 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEG------KATPLQAVRLLAEYLELESNKKSILASLYELVADS-TDGSNLIDL 111 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccc------cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhh-ccchhHHHH
Confidence 44455555555555555554333222111 11122344455555555555555555555444311 222333445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL----- 420 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~----- 420 (1082)
..-|.+|+..|++++|+...... .+.++...-..++.++.+++-|...++++.+++.+. .+..|+..+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhc
Confidence 56678899999999999888763 456777777888899999999999999998876443 333344332
Q ss_pred hcCCHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 421 ISSDTGAALDAFKTKAG-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
..+.+..|.-+|+.... .++.+.+++..+.++..+|+|++|...++.++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 22234555555555333 445555555555555555555555555555555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=102.33 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1082)
.+.+..|+.+|+++++++|+++.++..++.++.... +...+.....+++.. +|..+.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 346779999999999999999999999888876653 345666666666664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001414 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1082)
++++|...|++++.++|+ ...|..+|.++...|++++|+..|.+++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999994 5789999999999999999999999999999998753
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.8e-08 Score=83.23 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
++|..|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ +..+|.++...+.+|.+++.+|+|++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999995 466788899999999999999999999 8888888899999999999999999999999
Q ss_pred HHH
Q 001414 186 KRA 188 (1082)
Q Consensus 186 ~~a 188 (1082)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-05 Score=95.81 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1082)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1082)
....|.+.+..+|+....|..+..+++..++.++|..++++++...+... .....|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777775543222 1223344444444445666677777777
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 001414 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-- 408 (1082)
Q Consensus 331 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~-- 408 (1082)
+.+. -+....|..|..+|...+.+++|.++|+.+++...+...+|..+|..+++.++-+.|..++.++++.-|.
T Consensus 1523 Acqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 7752 2334567778888888888888888888888877777788888888888888888888888888888777
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 409 DAQAFIDLGELL-ISSDTGAALDAFKT-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471 (1082)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~Al~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 471 (1082)
+.......+.+- ..|+.+.+..+|+. ....|....+|.-+...-.+.|+...+..+|++++..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 666666666666 88888888888877 5566667788888888888999999999999999874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=76.58 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456666777777777777777777777777777777777777777777777777777766665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=93.70 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRD----N-----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
.-..|..|++.|+|..|...|++++..-+. + ..+++.+|.|+.++++|..|+..+.++|...|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 445788999999999999999998865321 1 2345666667777777777777777777777666
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC
Q 001414 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 196 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1082)
.-.++..|.++..+|+++.|+..|++++++.|.|..+...|..+...... .....-..|.+++...
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKL 356 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 55666677777777777777777777777777766666666555544433 1233345555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-07 Score=78.98 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1082)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|+++.|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46778888888888888888888888888887 57788888888888888888888888888888888888888888888
Q ss_pred hccHHhHHHHHHHHHHHHHhCC
Q 001414 244 ANEAAGIRKGMEKMQRAFEIYP 265 (1082)
Q Consensus 244 ~~~~~~~~~A~~~~~~al~~~p 265 (1082)
.|+ +..|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 887 8888888888877766
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00016 Score=76.38 Aligned_cols=66 Identities=42% Similarity=0.656 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1082)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~ 408 (1082)
..+..++..+...+.+..|+..+..++...|.....+..++..+...+.+..+...+.+++...|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 334444444444444444444444444444443344444444444334444455455444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0011 Score=74.86 Aligned_cols=184 Identities=9% Similarity=-0.049 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
...|..........|+++...-.|++++-. -......
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------------------------------------cA~Y~ef 333 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-------------------------------------------CALYDEF 333 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------------------------------------HhhhHHH
Confidence 355666677777888888888888887652 1235678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcc
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 600 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 600 (1082)
|...++.....|+..-|...+..+.+.+ |..+...+.-+.+-...|++..|...++......|+...+-..........
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 8888888888888888887777777654 566777777777788888888898888888887788877777777777777
Q ss_pred cchHHHHH---HHHHhhhcCCCCcH--HHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001414 601 DDWVKAKE---TFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675 (1082)
Q Consensus 601 g~~~~A~~---~~~~al~~~~~~d~--~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 675 (1082)
|+.+.+.. .+.....-...... ..++..+...|... ++.+.|...+.+++...|.+-..+..+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 87777763 22222221111111 11122222212222 667777777778887777776666555
Q ss_pred HHHHH
Q 001414 676 GVVLA 680 (1082)
Q Consensus 676 a~~~~ 680 (1082)
..+..
T Consensus 482 ~~~~~ 486 (577)
T KOG1258|consen 482 IRFEL 486 (577)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-06 Score=91.14 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHhhcC--C----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHc
Q 001414 649 THLEKAKELYTRVIVQHT--S----NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQ 721 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p--~----~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~ 721 (1082)
+++++|...|.++....- + -..++...+.++... ++.+|+.+|+++++..-.. .+..-..++..+|.+|...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 555555555555543321 1 112233344454444 8888899998888876221 1123456888999999998
Q ss_pred -CCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhh
Q 001414 722 -GNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTL 796 (1082)
Q Consensus 722 -g~~~~Ai~~~~~al~~~~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l 796 (1082)
|++++|+++|++++..|..... ..++..+|.++...|+|.+|+..|+++....-+++...+++.-.+-..+.
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l--- 204 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL--- 204 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH---
Confidence 9999999999999998854444 56778999999999999999999999999877777666665443222222
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 797 QKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 797 ~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
+.-+.++.-.|.+.|+......
T Consensus 205 ---------~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 205 ---------CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp ---------HHHHTT-HHHHHHHHHHHGTTS
T ss_pred ---------HHHHcCCHHHHHHHHHHHHhhC
Confidence 2233445677888888876543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=88.62 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 001414 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1082)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1082)
.+..|.-++..|+|..|...|...++..+.++..+.++||||.+++.+|+|+.|...|..+++.++.+|..+.+++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55666667777777788888888777777777778888888888888888888888888888877777777788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001414 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1082)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1082)
++..+|+.++|..+|+++++.+|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888877665443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=74.94 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
+.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788889999999999999999999999999999999999999999999999999999988864
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00016 Score=76.28 Aligned_cols=224 Identities=29% Similarity=0.368 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001414 142 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1082)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1082)
+.+..+...+...+...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+.+..++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 55566666666666555542 55555566666666666666666666655 33433 455556666666666666666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHHhccHHhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 218 QAFQRALQLDPENVEALVALAV-MDLQANEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~-~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
..+..++...+.........+. ++...++ +..|+..+.+++...| .........+..+...+++..+...+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGD---YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 6666666655554333333333 4555555 5555555555555444 2333333344444445555555555555
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 294 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
++...... ....+..++..+...+.+..|+..+..++. ..+.....+..++..+...+.+..+...+.+++...|
T Consensus 193 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 193 ALKLNPDD--DAEALLNLGLLYLKLGKYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHhhCccc--chHHHHHhhHHHHHcccHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55332111 234455555555555555555555555554 2222233344444444444445555555555555544
Q ss_pred C
Q 001414 374 D 374 (1082)
Q Consensus 374 ~ 374 (1082)
.
T Consensus 268 ~ 268 (291)
T COG0457 268 D 268 (291)
T ss_pred c
Confidence 3
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-06 Score=85.43 Aligned_cols=106 Identities=19% Similarity=0.112 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCC---hh
Q 001414 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PS 129 (1082)
Q Consensus 53 ~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~---~~ 129 (1082)
.+.+..+...|...+... .......++..+|.++...|+.+ +|+..|.+++.+.|+. +.
T Consensus 12 ~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~~~~ 73 (168)
T CHL00033 12 DKTFTIVADILLRILPTT-------SGEKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYDRSY 73 (168)
T ss_pred ccccccchhhhhHhccCC-------chhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchhhHH
Confidence 344555555555443221 12246677888899988888777 9999999999887653 45
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
+|..+|.++...|++++|+..|.+++..+|.+...+..+|.++...|
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999888333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.1e-08 Score=100.23 Aligned_cols=243 Identities=13% Similarity=0.048 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
+-..|..|+.+|.|++|+.+|.+.+..+|.|+..+..+|.+|++.+.|..|...+..++.++... ..+|...|.+...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 44578889999999999999999999999888888899999999999999988888888888766 66788888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1082)
|+..+|...++.+|.+.|++.+..-.++.+..-... .-+.+.-|....+...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~-----------~I~~KsT~G~~~A~Q~----------------- 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRER-----------KIATKSTPGFTPARQG----------------- 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh-----------hHHhhcCCCCCccccc-----------------
Confidence 999999999999999988876655444433221100 0011111211111100
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1082)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1082)
..+++ ..-.-|..+...|.+..++..|..-+... ..+...... +..|.+..+++.++.-..+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000 01123555666777777777776655421 222222222 5667777788888888877777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
..|.........+.+-.-.|...++...++.++.+.|.+......+.
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s 342 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET 342 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence 76665555555555555667778888888888888887655444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-06 Score=77.44 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1082)
.+..++..|...+..|+|..|+..|+.+....|.. ..+.+.+|.+++..++|..|+..+++.++++|.+ .+.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678889999999999999999999999988865 6788999999999999999999999999999987 355778
Q ss_pred HHHHHHHHcCC
Q 001414 202 GIGLCRYKLGQ 212 (1082)
Q Consensus 202 ~lg~~~~~~g~ 212 (1082)
.+|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888887765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=81.56 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=97.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001414 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1082)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1082)
+.++.....+..|.-++..|++++|..+|+-+...+|.+ +..++++|.|+..+++|++|+..|..+..++++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 445557788999999999999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 237 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
.|.+++..|+ ...|+..|..++. .|.+.
T Consensus 111 agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 9999999999 9999999999888 45544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-06 Score=91.90 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (1082)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 221 (1082)
++++.|+.+|++..+.+|. +...+|.++...++-.+|+.++.+++..+|.+ ...+...+..+...++++.|+.+.+
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4445555555544444432 23334444444444445555555555444444 4444444444455555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHH
Q 001414 222 RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 222 ~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
+++...|.+...|..|+.+|...|+ ++.|+..++
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLN 292 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGD---FENALLALN 292 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 5555555555555555555555544 444444444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0011 Score=69.94 Aligned_cols=261 Identities=19% Similarity=0.132 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
-+++.-++..+..|+++.|.+-|+-++. +|.. ...+-++-.-....|.++-|..+-..+....|.. +..+...-...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r 198 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHH
Confidence 3444456666666777777777766653 2211 1112222222234566777777777777666666 44444444455
Q ss_pred HHcCCHHHHHHHHHHHHhh---CCCCH---HH--HHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 208 YKLGQLGKARQAFQRALQL---DPENV---EA--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~---~p~~~---~a--~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
+..|+++.|+.+.+..... .++-. .+ +...+...+. .+ ...|...-..+.++.|+....-..-+..++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-ad---p~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-AD---PASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CC---hHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 5667777777666654432 22111 01 1111111111 12 455566666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHH
Q 001414 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1082)
Q Consensus 280 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1082)
..|+..++-.+++.+-+..++. .++..|....--+.++.-++++-......|++....+..+..-+.-|++.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6666666666666655432211 12223333222233344444443322344555555555555555556665
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 001414 360 SALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 404 (1082)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~kal~ 404 (1082)
.|...-+.+....|. ..++..++.+-... |+-.++...+-+++.
T Consensus 347 ~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555555555543 23344444444333 555555555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.016 Score=70.30 Aligned_cols=470 Identities=14% Similarity=0.089 Sum_probs=244.9
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHHHcCCH
Q 001414 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (1082)
+..|+.+++-+++..+- ...+...+|.+++ ...+++.|+..+.+++.....+. ....+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 55677777777643221 2356666777766 67788888888888765544311 1234456678888888777
Q ss_pred HHHHHHHHHHHHhhCCCCCChhh-HHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 001414 322 EKAGLYYMASVKEINKPHEFIFP-YYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1082)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1082)
. |...+.+.+......+..... .+.+ ...+...+++..|+..++.+.... +.++. +....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 888888888754432222221 1222 233333478888888888887654 33433 223345566666777
Q ss_pred HHHHHHHHHHHHhC------CCC----HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001414 393 EKAQELLRKAAKID------PRD----AQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAH 462 (1082)
Q Consensus 393 ~~A~~~l~kal~~~------p~~----~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 462 (1082)
+.+++.+..+.... |.. ..+|..+-. ..++...|++..+.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~------------------------------l~~~l~~~~~~~~~ 245 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD------------------------------LCCSLQQGDVKNSK 245 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH------------------------------HHHHHHcCCHHHHH
Confidence 77777777664321 111 111211111 22344556655555
Q ss_pred HHHHHHHh---cch----hhhhcccccchhhhhhhhhHHhhhhhhhhhhhccC-CCCcC-CCCch--HHHHHHHHHHHHh
Q 001414 463 QSFKDALG---DGI----WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVE-LPWNK--VTVLFNLARLLEQ 531 (1082)
Q Consensus 463 ~~~~~al~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~--~~~~~~la~~~~~ 531 (1082)
..++..-. ... |....++.... +....... . ... ...+. .+..+ .-+++.-|.+...
T Consensus 246 ~~L~~lq~~~~~~~~~~~w~~~~~d~~i~--l~~~~~~~---~-------~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~ 313 (608)
T PF10345_consen 246 QKLKQLQQFLDEIKKSPSWPSWDEDGSIP--LNIGEGSS---N-------SGGTPLVFSWLPKEELYALVYFLSGLHNLY 313 (608)
T ss_pred HHHHHHHHHHHHhhcCccCCCcCCCeeEE--eecccccc---c-------CCCceeEEeecCHHHHHHHHHHHHHHHHhh
Confidence 55443322 110 11100000000 00000000 0 000 00000 11112 2233344555666
Q ss_pred cCChHHHHHHHHHHHHhC-------C---Ch----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc--
Q 001414 532 IHDTVAASVLYRLILFKY-------Q---DY----------------VDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 583 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~~~-------p---~~----------------~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-- 583 (1082)
.+..+.|.+++.+++..- | .. ..+.+..+.+.+-.+++..|...+..+....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 677778888888876511 1 00 1234556666788899999999988877653
Q ss_pred -CC------ChHHHHHhhhhhhcccchHHHHHHHH--------HhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHh
Q 001414 584 -GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 648 (1082)
Q Consensus 584 -p~------~~~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~ 648 (1082)
|. .+..++..|..+...|+.+.|...|. .+....+..+.+.+.. .|. +.-.. .+..
T Consensus 394 ~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~-LNl-~~I~~-~~~~------ 464 (608)
T PF10345_consen 394 SPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA-LNL-AIILQ-YESS------ 464 (608)
T ss_pred CccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH-HHH-HHHhH-hhcc------
Confidence 22 36688999999999999999999998 4444444444443332 222 22111 1110
Q ss_pred hHHH--HHHHHHHHH---HhhcCC-CHHHHHHH-HHHHH--hcCCchHHHHHHHHHHHHh-cCC-CCCCchHHHHHHHHH
Q 001414 649 THLE--KAKELYTRV---IVQHTS-NLYAANGA-GVVLA--EKGQFDVSKDLFTQVQEAA-SGS-VFVQMPDVWINLAHV 717 (1082)
Q Consensus 649 ~~~~--~A~~~~~~~---l~~~p~-~~~a~~~l-a~~~~--~~~~~~~A~~~~~~~~~~~-p~~-~~~~~~~~~~~la~~ 717 (1082)
.... ++..++.++ ....|+ +...++.+ -.++. ..-...++...+...+... ... ...-...++..+++.
T Consensus 465 ~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~ 544 (608)
T PF10345_consen 465 RDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHR 544 (608)
T ss_pred cchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 0011 133333322 222332 21222222 11221 1223447777777766655 211 111123355667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCC--HHHHH-----HHHHHHHHhccHHHHHHHHHHHHh
Q 001414 718 YFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 772 (1082)
Q Consensus 718 ~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~-----~La~~~~~~g~~~eA~~~l~~al~ 772 (1082)
++ .|+..+.......+.......++ ..+|. .++..+...|+.++|.....+.-.
T Consensus 545 lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 545 LF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 77 78888888887777765433322 22332 455567778999999888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.5e-06 Score=74.80 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHH
Q 001414 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLK 380 (1082)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~ 380 (1082)
.+..++.-|...+..|+|..|+..|+.+....+-++-...+.+.||.+|+..++++.|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3466778888888888888888888888887777777778888888888888888888888888888887764 5778
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 001414 381 ALGHIYVQLGQ---------------IEKAQELLRKAAKIDPRDAQA 412 (1082)
Q Consensus 381 ~la~~~~~~g~---------------~~~A~~~l~kal~~~p~~~~~ 412 (1082)
..|.++..... ...|...|+.++...|++..+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 88888887765 778999999999999987644
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.013 Score=69.21 Aligned_cols=670 Identities=15% Similarity=0.102 Sum_probs=328.5
Q ss_pred CCCHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001414 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1082)
Q Consensus 23 ~~~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1082)
|+++.++...+.++..++--.-++...+..++.++++...+-.++.... ++...+-+.|-.
T Consensus 525 PD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~--------Pd~g~LQTrLLE----------- 585 (1666)
T KOG0985|consen 525 PDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNS--------PDEGHLQTRLLE----------- 585 (1666)
T ss_pred hhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCC--------hhhhhHHHHHHH-----------
Confidence 5566666666655433444455666666666666666666666654421 111111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHc
Q 001414 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-------DNVPALLGQACVEFNR 175 (1082)
Q Consensus 103 ~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~la~~~~~~ 175 (1082)
-+..-|.+..+..+.-+.-...-|-..|.++-+.|-+.+|++.|.....+-. -++..+ ..++..
T Consensus 586 -----~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL----v~yFg~ 656 (1666)
T KOG0985|consen 586 -----MNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL----VNYFGS 656 (1666)
T ss_pred -----HHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH----HHHHHh
Confidence 1111233333333333332222366677777777777777776665433211 111111 123444
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHH
Q 001414 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1082)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~ 255 (1082)
-.+..++.+++.++..+-...-.+...++.-|..+=-.+.-++.|+.. ... +++-
T Consensus 657 lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~f----ks~---------------------eGL~ 711 (1666)
T KOG0985|consen 657 LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESF----KSY---------------------EGLY 711 (1666)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhh----ccc---------------------hhHH
Confidence 556677777776666543322333334444343333233333333321 111 2222
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------h---ccCCCCC-----chHHHHHHHHHHH
Q 001414 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL-----------A---VTNHGPT-----KSHSYYNLARSYH 316 (1082)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-----------~---~~~~~~~-----~~~~~~~la~~~~ 316 (1082)
+|--.+-....+|.+++.........|++.+.+.+.+..- . ..+.-|. .......+ ..|.
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdl-vlYL 790 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDL-VLYL 790 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHH-HHHH
Confidence 2222333345567777777777788888877776654321 0 1111110 11111122 2233
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCCChhhH--------H---------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001414 317 SKGDYEKAGLYYMASVKEINKPHEFIFPY--------Y---------------GLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1082)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~---------------~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1082)
..++..+=++.|-+-+.- ...|..+-++ + .|..-.-+.++..--..+++..+....
T Consensus 791 yrnn~~kyIE~yVQkvNp-s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 791 YRNNLQKYIEIYVQKVNP-SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHhhHHHHHHHHHhhcCC-cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 344444445544333210 0001000000 0 011112244455556667777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHhCCC--------------------CHHHHHHHHHHH-hc
Q 001414 374 DNCETLKALGHIYVQLGQIEKA----------QELLRKAAKIDPR--------------------DAQAFIDLGELL-IS 422 (1082)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A----------~~~l~kal~~~p~--------------------~~~~~~~la~~~-~~ 422 (1082)
.++.++..||.+|...++-.+- ...=+-+-+.+|. .-..+..+++.+ ..
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R 949 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVER 949 (1666)
T ss_pred cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhc
Confidence 7889999999999877643221 1111111122331 112333444444 44
Q ss_pred CCHHHHHHHHHh---------------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccch--h
Q 001414 423 SDTGAALDAFKT---------------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT--Y 485 (1082)
Q Consensus 423 ~~~~~Al~~l~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~ 485 (1082)
.+.+-=-+.+.. ......+|+-......+++..+-..+-++++++.+-.+. ..++.... .
T Consensus 950 ~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S---~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VFSENRNLQNL 1026 (1666)
T ss_pred cChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc---ccccchhhhhh
Confidence 443322222211 233445566666666777888888899999988764321 11111100 0
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH-------------H-H----
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI-------------L-F---- 547 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------l-~---- 547 (1082)
.+..+...-..+.+++...+.... .| .+|.+....+-+++|..+|++. + .
T Consensus 1027 LiLtAikad~trVm~YI~rLdnyD-----a~-------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA 1094 (1666)
T KOG0985|consen 1027 LILTAIKADRTRVMEYINRLDNYD-----AP-------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRA 1094 (1666)
T ss_pred HHHHHhhcChHHHHHHHHHhccCC-----ch-------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHH
Confidence 000011111123334444443311 01 1222233333344444444331 1 0
Q ss_pred ----hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHH
Q 001414 548 ----KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 623 (1082)
Q Consensus 548 ----~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~ 623 (1082)
..-+.+..|..+|......|...+|++.|-+ .++|..+.....+..+.|.|++-+.++..+-+....+...
T Consensus 1095 ~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1095 YEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred HHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 1123477899999999999999999988865 4677788888888888999999988888777654332222
Q ss_pred HHHHhHhHHHHHHhhh---------hcc-------CchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchH
Q 001414 624 ATLSLGNWNYFAALRN---------EKR-------APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 687 (1082)
Q Consensus 624 ~~~~Lg~~~y~~~~~~---------~~~-------~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~ 687 (1082)
+-+.++ |....+. .+. +.-.+.+.|+.|.-+|. ++.-+..|+..+...|.|..
T Consensus 1170 ~eLi~A---yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1170 SELIFA---YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHHH---HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHH
Confidence 221111 2222000 000 00002344555544442 22334455666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 001414 688 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767 (1082)
Q Consensus 688 A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l 767 (1082)
|.+..+++ ++..+|-..+.++...+.|.-|.-.=-. ---.++-+--|...|...|-+++-+..+
T Consensus 1239 AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiCGL~------iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1239 AVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQICGLN------IIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhcCce------EEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 66655554 2344555555555555554333211000 0111444556777788889999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHh
Q 001414 768 LRAIHLAPSNYTLRFDAGVAMQKFSAS 794 (1082)
Q Consensus 768 ~~al~~~p~~~~~~~nla~~~~~~~~~ 794 (1082)
+.++-+.-.+....--||..|.++-.+
T Consensus 1303 Ea~LGLERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1303 EAGLGLERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HhhhchhHHHHHHHHHHHHHHHhcCHH
Confidence 888888877777777788888776553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0014 Score=69.36 Aligned_cols=291 Identities=17% Similarity=0.113 Sum_probs=166.1
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhH
Q 001414 172 EFNRGRYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1082)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~-p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1082)
..-.|+-..|.+.-.+.-++- .+..+.+++.-+..-.-.|+++.|..-|+.++. +|+.. +..|-.+|+.....+..
T Consensus 94 AagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr~Gar 170 (531)
T COG3898 94 AAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHhcccH
Confidence 334444445544444443222 222344444445555555555555555555442 22211 11222222222222225
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC---chHHHHHHHHHH-HHcCCHHHHHH
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSY-HSKGDYEKAGL 326 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~la~~~-~~~g~~~~A~~ 326 (1082)
+.|..+-..+...-|.-+.++.......+..|+++.|+++.+......-..+. ...+-..-+... .-..+...|..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 55555555555555555555555555555666666666665554432211111 111111212211 12235667777
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 001414 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA-QELLRKAAKI 405 (1082)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~l~kal~~ 405 (1082)
.-..+++ ..|+++.+-..-+..++..|+..++-.+++.+.+..|. +.++ +..++.+.|+.... ++-..++..+
T Consensus 251 ~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 7777776 67888888888888899999999999999988887764 3322 22334455554322 2333444556
Q ss_pred CCCCHHHHHHHHHHH-hcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 001414 406 DPRDAQAFIDLGELL-ISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGD 471 (1082)
Q Consensus 406 ~p~~~~~~~~la~~~-~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 471 (1082)
.|++....+.++..- ..|++..|..-.+......+...++..++.+-... |+-.++..++-+++..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 788888888888765 88888888777777666666667777788876554 9999999999998874
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=71.45 Aligned_cols=65 Identities=34% Similarity=0.565 Sum_probs=34.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
+..|+|++|+..|++++..+|++ ..+++.+|.|++..|++++|...+.+++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34455555555555555555555 445555555555555555555555555555555544444443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.8e-06 Score=74.03 Aligned_cols=99 Identities=26% Similarity=0.261 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1082)
.+++.+|.++-..|+.++|+.+|++++......+....+++.+|.++...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467788888888888888888888888743334444667888888888889999998888888888887 67777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001414 383 GHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 383 a~~~~~~g~~~~A~~~l~kal~ 404 (1082)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.013 Score=66.46 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 001414 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~ 222 (1082)
.+.+...|...|...|-....|...|..-++.|....+..+|++++..-|-+ ...|.. ++.+...-|+.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3666777788888888888888888888889999999999999998888866 444433 44444566778888888888
Q ss_pred HHhhCCCC---HHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhC
Q 001414 223 ALQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1082)
Q Consensus 223 al~~~p~~---~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1082)
|......+ ...|-.+......+++ +..-...|.+.++..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIP 181 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhh
Confidence 88776543 3334444444444444 666777777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=72.59 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS---CPGAIRL 201 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~~ 201 (1082)
|.+++.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++...|++++|+.++++++...|+ + ..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~ 79 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRV 79 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHH
Confidence 3578888999999999999999999999875544 568889999999999999999999999988887 4 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 202 GIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 202 ~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999988877764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0036 Score=67.41 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 581 (1082)
+..+.+|+.....+...++-..|+.....++...|. ..+.++.++...++-+....+|+++.+
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 455677777777777788888888877777666665 566777777777777766666666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=70.04 Aligned_cols=67 Identities=36% Similarity=0.503 Sum_probs=56.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3567889999999999999999999999999999999999999999999999988888777766654
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-05 Score=87.76 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=68.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHH
Q 001414 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252 (1082)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~ 252 (1082)
...++++.|+.+|++....+|+. ...++.++...++..+|+..+.+++..+|.+...+...+.+++..++ ++.
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~---~~l 252 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK---YEL 252 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHH
Confidence 33455666666666665555442 33455555556666666666666666666666666666666666665 566
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1082)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 294 (1082)
|+.+.++++...|.+...|..|+.+|...|+++.|+..++.+
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666666666666666666666666666555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00023 Score=67.27 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHH
Q 001414 568 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647 (1082)
Q Consensus 568 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~ 647 (1082)
+++....-..+.+.+.|.. .-.+.++..+...|++.+|...|.+++.-.-.+|...++++++. .+..
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~----------- 137 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI----------- 137 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh-----------
Confidence 4444444445555555552 33456677777777777777777777764444466677777776 6666
Q ss_pred hhHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHH
Q 001414 648 ATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 725 (1082)
Q Consensus 648 ~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~ 725 (1082)
+++..|...++++.+.+|. .+.....+|.+|...|.+..|...|+.++...| .+......+..+..+|+..
T Consensus 138 -~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 138 -QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred -ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchh
Confidence 6677777777777766664 445555566777777777777777777777665 3556666666677777666
Q ss_pred HHHHHHHHHHH
Q 001414 726 LAMKMYQNCLR 736 (1082)
Q Consensus 726 ~Ai~~~~~al~ 736 (1082)
+|..-|-.+.+
T Consensus 211 ea~aq~~~v~d 221 (251)
T COG4700 211 EANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=75.88 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=46.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
-|.-+|..|+|.+|...|..+|...|..+ ..|...|.++++++.+..|+..+.+++.++|.. ..++...+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHH
Confidence 35555555555555555555555554432 233344444444444444444444444444444 333444444444
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH
Q 001414 209 KLGQLGKARQAFQRALQLDPENVE 232 (1082)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1082)
++..|+.|+..|.++++.+|....
T Consensus 180 k~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHH
Confidence 444444444444444444444333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.9e-06 Score=68.97 Aligned_cols=64 Identities=28% Similarity=0.547 Sum_probs=31.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
.+++..++|+.|+.++++++..+|.+ +..++..|.|+..+|++.+|+..|+++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 34444555555555555555555554 44444555555555555555555555555555444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.5e-07 Score=92.19 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=156.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
-..|..|+.+|.|++|+.+|.+++. ..|.++..+.+.+.+|++...|..|..-+..++.++.....+|...|.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999997 6677778899999999999999999999999999988888999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCCHHH--HHHHHHHHHHcCCHHHHH
Q 001414 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE----EVPIEV--LNNIGVIHFEKGEFESAH 462 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~----~~~~~~--~~~la~~~~~~g~~~~A~ 462 (1082)
+|+..+|...++.++.+.|++....-.++.+- ...++--+.....+. ...... .-.-|..++..|.++.++
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~---Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARIN---SLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc---chHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence 99999999999999999999776655544432 111111111111110 000000 122344555555555555
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHH
Q 001414 463 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 542 (1082)
Q Consensus 463 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 542 (1082)
..+..-+.. ...+..+..+ +..+.+.-+++.++.-.
T Consensus 255 ~~~~~~~A~-------------------------------------------~~~~~~L~~~-~~~~~KI~~~~~~~~~~ 290 (536)
T KOG4648|consen 255 VDVVSPRAT-------------------------------------------IDDSNQLRIS-DEDIDKIFNSNCGIIEE 290 (536)
T ss_pred eEeeccccc-------------------------------------------cCccccCccc-HHHHHHHhhcchhHHHH
Confidence 554432221 0011111111 44455556677777777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHH
Q 001414 543 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 590 (1082)
Q Consensus 543 ~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 590 (1082)
.+.+...|.+.....+.+..-.-.|...++...++.++.+.|.+....
T Consensus 291 ~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 291 VKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred HHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 777777777666666666666666777778888888888877655433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00043 Score=69.09 Aligned_cols=260 Identities=15% Similarity=0.161 Sum_probs=154.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 001414 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFE 454 (1082)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~ 454 (1082)
....|...-.++.++..+++|..-+...-.++..+... ...-.+| -...+.-.+.......+.+...
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Y-ey~p~iy------------p~rrGSmVPFsmR~lhAe~~~~ 134 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYY-EYYPHVY------------PGRRGSMVPFSMRILHAELQQY 134 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceee-eeccccC------------CCCcCccccHHHHHHHHHHHHh
Confidence 44667777778888888888877776665554222100 0000000 0012222333444444556666
Q ss_pred cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001414 455 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534 (1082)
Q Consensus 455 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 534 (1082)
.|+..+.+.-+...... ...+...+.....
T Consensus 135 lgnpqesLdRl~~L~~~--------------------------------------------------V~~ii~~~e~~~~ 164 (366)
T KOG2796|consen 135 LGNPQESLDRLHKLKTV--------------------------------------------------VSKILANLEQGLA 164 (366)
T ss_pred cCCcHHHHHHHHHHHHH--------------------------------------------------HHHHHHHHHhccc
Confidence 77777766655544331 0111122222223
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc-CCChHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 535 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
.+..+..+++-+ ....+.++.++.-.|.|.-.+..+.++++.+ |..|.....+|.+.++.|+.+.|..+|+..
T Consensus 165 ~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 165 EESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444432 2344455556666666666667777776666 556666667777777777777777777644
Q ss_pred hhcCCC-----CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Q 001414 614 SDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 688 (1082)
Q Consensus 614 l~~~~~-----~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A 688 (1082)
-+.... .......+.+.+ |... +++..|...|.+++..+|.++.+.|+.|.|+...|+...|
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 332111 122233344444 5555 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 001414 689 KDLFTQVQEAASGSVFVQMPDVWINLAHVY 718 (1082)
Q Consensus 689 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~ 718 (1082)
++.++++.+..|.... +-.+.+||-.+|
T Consensus 306 iK~~e~~~~~~P~~~l--~es~~~nL~tmy 333 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHYL--HESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHhccCCccch--hhhHHHHHHHHH
Confidence 9999999999885432 334555554433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.015 Score=62.81 Aligned_cols=431 Identities=12% Similarity=0.047 Sum_probs=234.5
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
-++.-++-+|++...|+.+..-+-.+|.+++-.+.++++..-.|--+.+|...-..-...++|.....+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999998888888888777666677789999999999998865543
Q ss_pred hHHHHHH-HHHHHHHc----C----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc------HHhHHHHHHHHHHH
Q 001414 196 PGAIRLG-IGLCRYKL----G----QLGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1082)
Q Consensus 196 ~~~~~~~-lg~~~~~~----g----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~a 260 (1082)
+.|.. +..+-... | ..-+|-+..-.+.-.+|.....|...+..+..... ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33322 22211111 1 12233333333344577777788777766544322 22355666677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-
Q 001414 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN- 336 (1082)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 336 (1082)
+...-++..-+. .+|+.-+.-+.++... ++..| -|-.|...|++......
T Consensus 188 l~tP~~nleklW---------~dy~~fE~e~N~~TarKfvge~sp-----------------~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 188 LQTPMGNLEKLW---------KDYENFELELNKITARKFVGETSP-----------------IYMSARQRYQEIQNLTRG 241 (660)
T ss_pred HcCccccHHHHH---------HHHHHHHHHHHHHHHHHHhcccCH-----------------HHHHHHHHHHHHHHHhcc
Confidence 765433332111 0111111111111100 00000 11222222222211000
Q ss_pred ---CCC----------C-ChhhHHHHHHHHHHc-----CC-HHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001414 337 ---KPH----------E-FIFPYYGLGQVQLKL-----GD-FRSA-LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1082)
Q Consensus 337 ---~~~----------~-~~~~~~~la~~~~~~-----g~-~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1082)
.+| . ...-|++....-... |+ ...- --.+++++...|-.+++|+.....+...++-+.|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 000 0 000122222111111 11 1111 2235666666777778888777777777888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHh----------------hcCCCC----CHHHHH--------
Q 001414 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT----------------KAGEEV----PIEVLN-------- 446 (1082)
Q Consensus 396 ~~~l~kal~~~p~~~~~~~~la~~~-~~~~~~~Al~~l~~----------------~~~~~~----~~~~~~-------- 446 (1082)
+....+.+...|. ....++.++ ...+.+....+|.+ ..+... .++.+.
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~ 398 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTF 398 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhh
Confidence 8777777666554 555566666 33333332222222 001100 111111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001414 447 ---NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 523 (1082)
Q Consensus 447 ---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (1082)
.+...-.+..-...|..+|-++-+.+ .....+.++.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-----------------------------------------~~~h~vyi~~ 437 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEG-----------------------------------------IVGHHVYIYC 437 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccC-----------------------------------------CCCcceeeeH
Confidence 11111112223344444444443311 1111222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC--hHHHHHhhhhhhccc
Q 001414 524 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--PNALSMLGDLELKND 601 (1082)
Q Consensus 524 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g 601 (1082)
.+.. +...|++..|-.+|+..+..+|+.+......-..+...|+-..|..+|++++..-... ...|-.+...-..-|
T Consensus 438 A~~E-~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 438 AFIE-YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHH-HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 2222 4456889999999999999999887777777777888899999999999877644333 345656666666667
Q ss_pred chHHHHHHHHHhhhcCCC
Q 001414 602 DWVKAKETFRAASDATDG 619 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~ 619 (1082)
+...+...-++.....|.
T Consensus 517 ~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 517 SLNNVYSLEERFRELVPQ 534 (660)
T ss_pred chHHHHhHHHHHHHHcCc
Confidence 777777766666666665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.017 Score=62.88 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 180 (1082)
|++++.+|...|.+........+ +.+.++....+-..+.+.-...+...-+..|.++...+-.|...++.|.|.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 45667799999999876654443 3444555666667788877777777778889888888999999999999999
Q ss_pred HHHHHHHHHHhCCCC------------hHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001414 181 SLEFYKRALQVHPSC------------PGAI--RLGIGLCRYKLGQLGKARQAFQRALQL 226 (1082)
Q Consensus 181 Al~~~~~al~~~p~~------------~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~ 226 (1082)
|+..+......-... .++. -...+.|+..+|.+.+++..+++.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999887665541111 0111 134689999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.8e-06 Score=68.24 Aligned_cols=70 Identities=33% Similarity=0.416 Sum_probs=61.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la 417 (1082)
|..+|+..++++.|+.++++++..+|+++..+..+|.++...|++.+|+..|.++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999998887765554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-05 Score=74.00 Aligned_cols=111 Identities=20% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001414 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
-.-|.-+|..|+|.+|..-|..+|.+.|..+ ..++.+.|.|+++++.++.|+....++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3445667777788888888888877777662 334566777777788888888888888888887777777777777
Q ss_pred HHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
..... ++.|+..|.+++..+|....+.-..+.+--
T Consensus 179 ek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 179 EKMEK---YEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred Hhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 77766 777888888877777777666665555433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.046 Score=66.36 Aligned_cols=409 Identities=18% Similarity=0.157 Sum_probs=228.4
Q ss_pred HHHHHHHHHhccCCCC-CchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHHcCCHHH
Q 001414 287 VEQLTETALAVTNHGP-TKSHSYYNLARSYH-SKGDYEKAGLYYMASVKEINKPHEFI----FPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~la~~~~~~g~~~~ 360 (1082)
|++.++.++......| ..+.+++.+|.+++ ...+++.|..++.+++..... +... .+.+.++.++.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 5666666664333322 34566777888777 677888888888888764322 3332 23445677777777666
Q ss_pred HHHHHHHHHHhCCC---cH-HHHH-HH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHH
Q 001414 361 ALTNFEKVLEIYPD---NC-ETLK-AL-GHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAF 432 (1082)
Q Consensus 361 A~~~~~~~l~~~p~---~~-~~~~-~l-a~~~~~~g~~~~A~~~l~kal~~~--p~~~~~~~~la~~~~~~~~~~Al~~l 432 (1082)
|...+++.++.... .. ...+ .+ ...+...+++..|+..++...... +.++.+...
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~----------------- 180 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL----------------- 180 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH-----------------
Confidence 88888887765433 11 1111 12 222323367777777777776654 233332221
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCc
Q 001414 433 KTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 512 (1082)
Q Consensus 433 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (1082)
+....+.++...+....++..++.+........ . ...
T Consensus 181 -----------~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q-~------------------------------~~~- 217 (608)
T PF10345_consen 181 -----------ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ-L------------------------------DPS- 217 (608)
T ss_pred -----------HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc-c------------------------------CCC-
Confidence 122335566677777888888877754211000 0 000
Q ss_pred CCCCchHHHHHHHHHH--HHhcCChHHHHHHHHHH---HH---hCC---C---------------------h--------
Q 001414 513 ELPWNKVTVLFNLARL--LEQIHDTVAASVLYRLI---LF---KYQ---D---------------------Y-------- 552 (1082)
Q Consensus 513 ~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~---l~---~~p---~---------------------~-------- 552 (1082)
..+....++..+-.+ +...|++..+...++.+ +. ..| . .
T Consensus 218 -~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 218 -VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred -CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 122233344444333 44556666666554443 22 111 0 0
Q ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCh--------------------------HHHHHhhhhhhcccc
Q 001414 553 ----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP--------------------------NALSMLGDLELKNDD 602 (1082)
Q Consensus 553 ----~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--------------------------~~~~~lg~~~~~~g~ 602 (1082)
.-+|+.-|...+..+..+.|.+++.++++.-.+.. .+.+..+++.+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 12344445556677777788888888776321110 134556777788899
Q ss_pred hHHHHHHHHHhhhcC---CC-----CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHH--------HHHhhcC
Q 001414 603 WVKAKETFRAASDAT---DG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHT 666 (1082)
Q Consensus 603 ~~~A~~~~~~al~~~---~~-----~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~p 666 (1082)
+..|...+..+.... |. ..++.++..|-. +... |+.+.|...|. .+....+
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCc
Confidence 999999998777642 11 235566666655 5566 99999999998 4445555
Q ss_pred C---CHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH----H---cCCHHHHHHHHH
Q 001414 667 S---NLYAANGAGVVLAEKGQFDV----SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF----A---QGNFALAMKMYQ 732 (1082)
Q Consensus 667 ~---~~~a~~~la~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~----~---~g~~~~Ai~~~~ 732 (1082)
. .+.+..++.+++...+.-.. +-.++.++-.... +.+..++..+++++ . .-...++...+.
T Consensus 444 ~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~ 518 (608)
T PF10345_consen 444 FRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQ 518 (608)
T ss_pred chHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence 4 33455566777776554333 4444444333221 12222333333222 1 123458888888
Q ss_pred HHHHhh-cCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 733 NCLRKF-YYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 733 ~al~~~-~~~~~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
.+++.+ ....+ .-++..++..++ .|+..+.......+..+....
T Consensus 519 ~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 519 EALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 888876 22222 344566777777 788888776666677665543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.6e-06 Score=69.67 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC-C----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 001414 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 706 ~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~-~----~~~~~~La~~~~~~g~~~eA~~~l~~al~~~ 774 (1082)
+...++.++|.+|..+|+|++|+.+|++++....... + +.++..+|.+|...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5677899999999999999999999999997642111 1 6778899999999999999999999998763
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00016 Score=68.34 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
..+.+|...+. .-| .....+.+|..+...|++.+|...|.+++. ....++..++++|...+..+++..|...++
T Consensus 74 R~~Rea~~~~~----~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 74 RHLREATEELA----IAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HHHHHHHHHHh----hch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34445555554 445 345688899999999999999999999986 456778999999999999999999999999
Q ss_pred HHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 001414 187 RALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 187 ~al~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
...+.+|.. .++..+.+|..+..+|.+..|...|+.++...|+ +.+....+..+..+|.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 999998865 5677899999999999999999999999998884 6677777888888885
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00024 Score=62.88 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHH
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~ 207 (1082)
+-..|..+...|+.+.|++.|.+++.+.|.++.+|..+|..+.-+|+..+|+.-+.+++.+.... ....+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986443 345678899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001414 208 YKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00096 Score=73.82 Aligned_cols=119 Identities=19% Similarity=0.087 Sum_probs=90.2
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
++..+++.+|.+...+..-+..+-.+|+.-+|..++..++-..|.. -.+++.+|.++.+.|...+|--++.-++.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3445566666665555555555566799999999999988877654 35678889999999999998888887777666
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1082)
.. ...++.++.++..+|.+......|..+.+.+|....+.-
T Consensus 281 ~~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~ 321 (886)
T KOG4507|consen 281 FF-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIK 321 (886)
T ss_pred cc-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHH
Confidence 66 455888999999999999999999988888887554433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0026 Score=63.70 Aligned_cols=223 Identities=13% Similarity=0.164 Sum_probs=108.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh----HHHH------HHHHHHHHHHHHHhchhhhhhhhhH
Q 001414 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV----RYER------IAILNALGVYYTYLGKIETKQREKE 107 (1082)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~----~~~~------~~~~~~la~~y~~~g~~~~~~~~k~ 107 (1082)
..+.+|...-.++.+....++|..-|+..-..+..++|-.. .+++ .++...-|.+...+|.....- .|-
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesL-dRl 145 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESL-DRL 145 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHH-HHH
Confidence 35668888888899999999998888876554443332211 1111 111112222333344333100 000
Q ss_pred H----HHHHHHHHHHHHHhcCCC-Ch--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 001414 108 E----HFILATQYYNKASRIDMH-EP--------STWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEF 173 (1082)
Q Consensus 108 ~----~~~~A~~~~~~al~~~p~-~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~ 173 (1082)
. ...+-+..++. ..-|. .. .+.+.++.+++..|.|.-....+.++++.+ |..+.....++.+.+
T Consensus 146 ~~L~~~V~~ii~~~e~--~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 146 HKLKTVVSKILANLEQ--GLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 0 00001111110 01111 11 122334555555556666666666666555 344555555666666
Q ss_pred HcCChHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHH
Q 001414 174 NRGRYSDSLEFYKRALQVHP-----SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1082)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1082)
+.|+.+.|..+|+.+-+.+. .....+....+.+|.-.+++..|...|.+++..+|.++.+....|.+.+..|+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-- 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-- 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--
Confidence 66666666666654333211 11123344445555555555566666666666666666555555555555555
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 001414 249 GIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 249 ~~~~A~~~~~~al~~~p~ 266 (1082)
...|++.++.++...|.
T Consensus 302 -l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 302 -LKDALKQLEAMVQQDPR 318 (366)
T ss_pred -HHHHHHHHHHHhccCCc
Confidence 55566666555555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=68.09 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh--cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 666 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA--SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738 (1082)
Q Consensus 666 p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~ 738 (1082)
|+-..+++++|.+|...|++++|+.+|+++++.. -+...+....++.++|.+|..+|++++|+++|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456788999999999999999999999999774 111222457789999999999999999999999999864
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.052 Score=59.17 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
.+...|.++-.++++.+|..+|.++.+...+++. .+.++..-.+-..+.+.-...+...-+..|.+ +.+.+..|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc-hHHHHHHH
Confidence 4556788889999999999999999876655532 33344444455566666656665566667876 67777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 001414 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1082)
...++.|.+.+|+..+..-...-......|...- +.+ +. .+...-...+.++...|.+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----------i~~----------l~-~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----------IQQ----------LF-SDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----------HHH----------Hh-hHHHHHHHHHHHHHhcCCc
Confidence 8889999999998887765443222111111110 000 00 1122334456677778888
Q ss_pred HHHHHHHHHHHh
Q 001414 285 FLVEQLTETALA 296 (1082)
Q Consensus 285 ~~A~~~~~~~l~ 296 (1082)
.++..++++++.
T Consensus 145 ~EgR~iLn~i~~ 156 (549)
T PF07079_consen 145 SEGRAILNRIIE 156 (549)
T ss_pred chHHHHHHHHHH
Confidence 888777777764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.1 Score=62.06 Aligned_cols=600 Identities=12% Similarity=0.065 Sum_probs=303.8
Q ss_pred cCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh---HHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHH
Q 001414 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV---RYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112 (1082)
Q Consensus 36 e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~ 112 (1082)
-+.++.+-.++|.-|..+=-.+.-+++|+.--+-..--||-++ ..+...+++....+-++.|+. .+
T Consensus 674 irqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qi-----------kE 742 (1666)
T KOG0985|consen 674 IRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQI-----------KE 742 (1666)
T ss_pred HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccH-----------HH
Confidence 3467888889999999998888889999885433222222111 011223333344444444443 33
Q ss_pred HHHHHHHHHhcCCCChh---------------------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------
Q 001414 113 ATQYYNKASRIDMHEPS---------------------TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL------ 165 (1082)
Q Consensus 113 A~~~~~~al~~~p~~~~---------------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------ 165 (1082)
....++..--.+|.... -++.--..|+..++..+=++.|-+ +.+|.....-
T Consensus 743 vERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~LLD 820 (1666)
T KOG0985|consen 743 VERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGALLD 820 (1666)
T ss_pred HHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhhhhc
Confidence 33333332222221111 112223455566666665655543 3345432111
Q ss_pred ------HHHHHHHH---------------HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH--------
Q 001414 166 ------LGQACVEF---------------NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA-------- 216 (1082)
Q Consensus 166 ------~~la~~~~---------------~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A-------- 216 (1082)
+....+.. +.++..--+.+++..+.....+ +.++..+|.+|...++-.+-
T Consensus 821 ~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d-~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 821 VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQD-PATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcc-hHHHhhhhheeecCCCChHHhcccCCcc
Confidence 11111222 2233344444555555555555 66777777777665543321
Q ss_pred --HHHHHHHHhhCCC--------------------CHHHHHHHHHHHHHhccHHhHHHHH--------HHHHHHHHh---
Q 001414 217 --RQAFQRALQLDPE--------------------NVEALVALAVMDLQANEAAGIRKGM--------EKMQRAFEI--- 263 (1082)
Q Consensus 217 --~~~~~~al~~~p~--------------------~~~a~~~la~~~~~~~~~~~~~~A~--------~~~~~al~~--- 263 (1082)
...=.-+-+.+|. .-..+..++..+....+..-+.+.+ ....+.+..
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 1111111112221 0112334444444444433333333 122222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChh
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1082)
...+|.....-...+...+-..+.+.++++++-.......+......+.... -.-+......+..+.-. -+.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdn-----yDa-- 1051 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDN-----YDA-- 1051 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhcc-----CCc--
Confidence 1235555566667777778888888888887743222222222222222221 22334444555544421 111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hc
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~-~~ 422 (1082)
-.+|.+.+..+-|++|...|.+.- -+..+...| ....+..+.|.++-+++ +.+..|..++..- ..
T Consensus 1052 --~~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 --PDIAEIAIENQLYEEAFAIFKKFD----MNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred --hhHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhc
Confidence 124666677777778777776531 122222211 22345556666655544 3456666666665 66
Q ss_pred CCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhh
Q 001414 423 SDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 502 (1082)
Q Consensus 423 ~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1082)
+...+|++.|-+ ..++..|........+.|.|++-+.++.-+.+...- .......+ +.+....-.
T Consensus 1118 ~~v~dAieSyik----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-----~~id~eLi------~AyAkt~rl 1182 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-----PYIDSELI------FAYAKTNRL 1182 (1666)
T ss_pred CchHHHHHHHHh----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-----ccchHHHH------HHHHHhchH
Confidence 666666666655 233445555666666677777777766655442110 00000000 000000000
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 503 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
..++... ..|+. .-.-..|.-+...|.++.|.-+|.. +.-|..|+..+...|+|..|....+++
T Consensus 1183 ~elE~fi----~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1183 TELEEFI----AGPNV-ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHHHHh----cCCCc-hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 0000000 22322 2333456666666788777777754 455777888888888888888877775
Q ss_pred cCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHH
Q 001414 583 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 662 (1082)
Q Consensus 583 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 662 (1082)
++..+|-..+......+.+.-|.-+=-.++-.. .-+-.|.+. |... |.+++-+.+++.+|
T Consensus 1247 --ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha-----deLeeli~~-Yq~r------------GyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA-----DELEELIEY-YQDR------------GYFEELISLLEAGL 1306 (1666)
T ss_pred --cchhHHHHHHHHHhchhhhhHHHhcCceEEEeh-----HhHHHHHHH-HHhc------------CcHHHHHHHHHhhh
Confidence 345677777777666666655544322222111 112234443 4444 99999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHhcCCchHHHHHHH---------HHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001414 663 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFT---------QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 729 (1082)
Q Consensus 663 ~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~---------~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~ 729 (1082)
.+.......+..||++|.+-+ +++-.+.++ +++... +....|..+..+|.+-..|+.|.-
T Consensus 1307 GLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~------eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1307 GLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAA------EQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred chhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHH------HHHHHHHHHHHHHHhhhhhhHHHH
Confidence 888778888888898888643 333333332 223322 345677777777777777776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-05 Score=83.63 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=40.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001414 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+++..|+.+|.+|+..|+|++|+..|++++.++|++..+ |+.+|++|..+|++++|+..|++++.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666666666665532 566666666666666666666666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00022 Score=63.11 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC--HHHHHHHH
Q 001414 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 751 (1082)
Q Consensus 674 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~~La 751 (1082)
.-|+++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-++++++..+.... ...+...|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 458888999999999999999999998 78999999999999999999999999999998543322 56777889
Q ss_pred HHHHHhccHHHHHHHHHHHHhhCC
Q 001414 752 RTHYEAEQWQDCKKSLLRAIHLAP 775 (1082)
Q Consensus 752 ~~~~~~g~~~eA~~~l~~al~~~p 775 (1082)
.+|...|+.+.|+.-|..|-++..
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999998888764
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.077 Score=58.70 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=79.2
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
+...+.-..+-..+...|-+.+|...|.......|-....+.....+-.. .-+...+..+|..++.....+++.|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 34445555566677788889999999999999888877776666555322 2247788999999999999999999999
Q ss_pred hhhhhcccchHHHHHHHHHhhhc
Q 001414 594 GDLELKNDDWVKAKETFRAASDA 616 (1082)
Q Consensus 594 g~~~~~~g~~~~A~~~~~~al~~ 616 (1082)
-..-...|..+.+-..+.++++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 88888999988888888888763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.6e-05 Score=82.49 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=65.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001414 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1082)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 227 (1082)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999832 459999999999999999999999999973
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0044 Score=73.75 Aligned_cols=270 Identities=17% Similarity=0.166 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHH
Q 001414 518 KVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKV 582 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~a~~~la~~~~~~g-----~~~eA~~~~~~al~~ 582 (1082)
+....+.+|.++..- .+++.|+.+|+.+... .-.++.+.+.+|.+|.... +...|+.+|.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 566777777777653 5899999999998761 1124567888999988754 677899999998776
Q ss_pred cCCChHHHHHhhhhhhccc---chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHH
Q 001414 583 NGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 659 (1082)
Q Consensus 583 ~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 659 (1082)
. ++.+.+.+|.++..-. ++..|..+|..+.... ...+.+.++.+ |..- .... .+...|..+|.
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G-~gv~-------r~~~~A~~~~k 388 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELG-LGVE-------RNLELAFAYYK 388 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhC-CCcC-------CCHHHHHHHHH
Confidence 5 6778888999887765 5789999999998776 55677778877 5443 1111 67899999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 001414 660 RVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKMYQNC 734 (1082)
Q Consensus 660 ~~l~~~p~~~~a~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~----g~~~~Ai~~~~~a 734 (1082)
++...+ ++.+...++..+... +.++.+...+....+..-.... .+...+.......... .+...+...|.++
T Consensus 389 ~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 465 (552)
T KOG1550|consen 389 KAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ-SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRA 465 (552)
T ss_pred HHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh-hHHHHHHHhccccccccccccchhHHHHHHHHH
Confidence 999988 566666666665543 7788877777776665521000 0111111111111111 2566677777766
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHH
Q 001414 735 LRKFYYNTDAQILLYLARTHYEA----EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTV 810 (1082)
Q Consensus 735 l~~~~~~~~~~~~~~La~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~ 810 (1082)
.. ..++.+...||.+|+.- .++..|...|.++.... ....||++.+ ...|. ...
T Consensus 466 ~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~-~e~g~--------------g~~ 523 (552)
T KOG1550|consen 466 AA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM-HEHGE--------------GIK 523 (552)
T ss_pred Hh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH-HhcCc--------------Ccc
Confidence 54 46688889999999885 35889999999999888 8899999996 33432 222
Q ss_pred HHHHHHHHHHHHHhhCC
Q 001414 811 AELENAVRVFSHLSAAS 827 (1082)
Q Consensus 811 ~~l~~A~~~f~~l~~~~ 827 (1082)
. +..|.+++...+..+
T Consensus 524 ~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEED 539 (552)
T ss_pred h-hHHHHHHHHHHHhcC
Confidence 3 778888888887654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.013 Score=57.91 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc----C--CChHHHHHhhhhhhcccchH
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----G--KYPNALSMLGDLELKNDDWV 604 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~ 604 (1082)
-.+.+++|..+|.++ +.+|....++..|-..|-++-... . +....+.-.+.+| +.+++.
T Consensus 26 g~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence 345677777776665 333444444444444444443322 0 1122344444553 445788
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc-C
Q 001414 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-G 683 (1082)
Q Consensus 605 ~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~-~ 683 (1082)
+|+.++++++++ |..+ |++..|..+.. .+|.+|... .
T Consensus 91 eAv~cL~~aieI----------------yt~~------------Grf~~aAk~~~--------------~iaEiyEsdl~ 128 (288)
T KOG1586|consen 91 EAVNCLEKAIEI----------------YTDM------------GRFTMAAKHHI--------------EIAEIYESDLQ 128 (288)
T ss_pred HHHHHHHHHHHH----------------HHhh------------hHHHHHHhhhh--------------hHHHHHhhhHH
Confidence 888888877654 3444 55555544432 345555433 6
Q ss_pred CchHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHh
Q 001414 684 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEA 757 (1082)
Q Consensus 684 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~~~~~La~~~~~~ 757 (1082)
++++|+..|+++-+-..+.... .....++..+..-...++|.+||..|+++....-+++- -..++.-|.|++-.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 7788888888887766432110 12234556677777889999999999998875322222 23455678888888
Q ss_pred ccHHHHHHHHHHHHhhCCCCcch
Q 001414 758 EQWQDCKKSLLRAIHLAPSNYTL 780 (1082)
Q Consensus 758 g~~~eA~~~l~~al~~~p~~~~~ 780 (1082)
++.-.+...+++-..++|.-...
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999975443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0024 Score=66.12 Aligned_cols=172 Identities=14% Similarity=0.109 Sum_probs=133.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhc-CCCCcHHHHH--HhHhHHHHH
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNYFA 635 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~d~~~~~--~Lg~~~y~~ 635 (1082)
-+.+....|++.+|.....+.+.-.|.+..++..--.+++.+|+...-...+++++-. ++....|+++ .++-. +..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHH
Confidence 4556677899999999999999999999999999999999999999999999999876 4443334332 22222 334
Q ss_pred HhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 001414 636 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715 (1082)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 715 (1082)
. |.|++|.+.-+++++++|.+.++...++.++...+++.++.++..+--..-..+.. -...-|...|
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHHHH
Confidence 4 99999999999999999999999999999999999999999998876543321110 1234566778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCH
Q 001414 716 HVYFAQGNFALAMKMYQNCLRKFYYNTDA 744 (1082)
Q Consensus 716 ~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 744 (1082)
.++...+.|+.|+++|..-+-.-....|.
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 88999999999999998766443344443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00033 Score=66.79 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
--.|..|.+.++.....||.+++.++..|.+++...+ +++|+.-|+.++.++|+...+++.+|.++...+
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3456788888888888999999988888887776643 456677777777778887777777777776554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.01 Score=70.67 Aligned_cols=282 Identities=16% Similarity=0.123 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 001414 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG-- 176 (1082)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-- 176 (1082)
....|..+|+.+... .+..+...+|.+++.- .+.+.|+.+|..+... .-.++.+...+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887655 4667777888887765 5799999999998771 1125667888999988853
Q ss_pred ---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHh
Q 001414 177 ---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAG 249 (1082)
Q Consensus 177 ---~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~ 249 (1082)
++..|+.+|.++......+ ..+.+|.|+..-. ++..|..+|..+... .+..+.+.++.++..- |-..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 7788999999988776543 5788888888766 678999999998754 5788888888887653 22344
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHHHc----CCHHH
Q 001414 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAVTNHGPTKSHSYYNLAR-SYHSK----GDYEK 323 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~-~~~~~----g~~~~ 323 (1082)
...|..++.++.... .+.+...++.++... +.+..+...+..........+.....++..-. ..... .+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 889999999999888 444445554444333 55555544444333222111111111111111 11111 14455
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHH
Q 001414 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQ 396 (1082)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~ 396 (1082)
+...+.++.. ..+..+...+|.+|..- .+++.|...|..+.... ....+++|.++..- ..+..|.
T Consensus 458 ~~~~~~~a~~-----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAA-----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAK 529 (552)
T ss_pred HHHHHHHHHh-----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHH
Confidence 5555555543 34455566666666543 34677777777766654 66667777666533 1256666
Q ss_pred HHHHHHHHhCC
Q 001414 397 ELLRKAAKIDP 407 (1082)
Q Consensus 397 ~~l~kal~~~p 407 (1082)
.+|.++...+.
T Consensus 530 ~~~~~~~~~~~ 540 (552)
T KOG1550|consen 530 RYYDQASEEDS 540 (552)
T ss_pred HHHHHHHhcCc
Confidence 66666655443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00077 Score=72.77 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
+|+.......+.+..+.|..+|.++++..+.+...|...|.+.+. .++...|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 344444444444445555555555553333344555555555444 333344555555555555555 444555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
..|+.+.|+.+|++++..-|... ..|.....+-...|+ ......+..++....|...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 55555555555555555444332 345555555555555 5555556666666555533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00037 Score=66.41 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001414 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1082)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g 211 (1082)
|+.|.+.++.....+|.++..++.-|.++..+.+ +++|+.-|+.++.++|+. ..+++.+|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHH
Confidence 6778888888888889888888888877766533 344555555555666665 455555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0047 Score=68.60 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=84.8
Q ss_pred HHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHH
Q 001414 591 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 670 (1082)
Q Consensus 591 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 670 (1082)
+.-|......|+...|+.++..++...|......+..|+++ .+.. +....|-.++.++|.+....+.
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~-~~~~------------~~~~da~~~l~q~l~~~~sepl 677 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANL-LIHY------------GLHLDATKLLLQALAINSSEPL 677 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHH-HHHh------------hhhccHHHHHHHHHhhcccCch
Confidence 33455555678888888888888888877666777788887 6666 7778888888888888877888
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 001414 671 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 719 (1082)
Q Consensus 671 a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 719 (1082)
..+.+|.++...++.+.|++.|++++...| +++.+-..|-.+-+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-----~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTT-----KCPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCC-----CChhhHHHHHHHHH
Confidence 888888888888888888888888888887 55665555544444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=70.93 Aligned_cols=127 Identities=12% Similarity=0.186 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 727 (1082)
+..+.|..+|.++++..+.+...|...|.+-.. .++...|..+|+.++...| .++.+|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 669999999999997666677888888888666 5666679999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcch
Q 001414 728 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 780 (1082)
Q Consensus 728 i~~~~~al~~~~~~~-~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 780 (1082)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999998743333 35688888888888999999999999999999985543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0025 Score=70.29 Aligned_cols=192 Identities=19% Similarity=0.213 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHh
Q 001414 558 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 637 (1082)
Q Consensus 558 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~ 637 (1082)
.+..-..+..++..-++..++|++++|+.+.+|..++.- ......+|..+|+++++.... .++.. .....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhhc
Confidence 344445667778888888899999999988888877652 233467888888888764422 11111 11000
Q ss_pred hhhccCchHHhhHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 001414 638 RNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 716 (1082)
Q Consensus 638 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~ 716 (1082)
. |. .++.....+- --+++-..+|.+..+.|+.++|++.|+.++...|.. ++..++.+|..
T Consensus 243 ~----------g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie 303 (539)
T PF04184_consen 243 H----------GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIE 303 (539)
T ss_pred c----------cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHH
Confidence 0 10 1111111111 134556688999999999999999999999877732 46779999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cc---------------HHHHHHHHHHHHhhCCCCcc
Q 001414 717 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQ---------------WQDCKKSLLRAIHLAPSNYT 779 (1082)
Q Consensus 717 ~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~-g~---------------~~eA~~~l~~al~~~p~~~~ 779 (1082)
+++.++.|.++..++.+. ....-|..+.+.|.-+..-.+. |+ -..|.+.+.+|++.+|.-|.
T Consensus 304 ~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 999999999998887764 2222345566666555443331 21 23477899999999998654
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0046 Score=64.11 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHH--HHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-HPSCPGA--IRLGIGLC 206 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~p~~~~~--~~~~lg~~ 206 (1082)
-....+.+++.+|++.+|....+++++-.|.+..++..--.+++.+|+...-...+++++.. +|+.|.. +.-.++.+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34445667788999999999999999999999999888888999999999999999999887 6666433 34457889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1082)
+...|-|++|...-.+++++||.+.-+...++.++...++ +.++.+...+.-..-. ..+. +
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr---~s~m-l------------ 245 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWR---QSWM-L------------ 245 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchh---hhhH-H------------
Confidence 9999999999999999999999999999999999998888 8888887664322111 0000 0
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001414 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1082)
....|...+.++...+.|+.|+..|.+-+
T Consensus 246 -----------------asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 246 -----------------ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -----------------HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 01335556667777778888888877654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00049 Score=67.93 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001414 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1082)
..|..|+..|.+++.++|..+..|..++.++++..+++.+..-..+++.++|+.+.+.+.+|.++.....|.+|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 001414 188 ALQVH 192 (1082)
Q Consensus 188 al~~~ 192 (1082)
+..+.
T Consensus 104 a~sl~ 108 (284)
T KOG4642|consen 104 AYSLL 108 (284)
T ss_pred HHHHH
Confidence 86653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=71.77 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=70.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 001414 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
..|..++....|..|+..|.+++.++|.. +..+.+.+.|++++.+++.+.....++++++|+.+.+++.+|...+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34556666777777778888888878777 66677777888888888888777788888888777777777777777766
Q ss_pred HHhHHHHHHHHHHHHHh
Q 001414 247 AAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 247 ~~~~~~A~~~~~~al~~ 263 (1082)
+..|+..+++++.+
T Consensus 94 ---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 ---YDEAIKVLQRAYSL 107 (284)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 77777777777554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.18 Score=55.86 Aligned_cols=420 Identities=10% Similarity=0.051 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRA 188 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~a 188 (1082)
...-..+|..+...-+.++..|.......-+.+.+.+--.+|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34567788888888888999999998888888889999999999999999999999999988888776 89999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---------hccHHhH---------
Q 001414 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ---------ANEAAGI--------- 250 (1082)
Q Consensus 189 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---------~~~~~~~--------- 250 (1082)
|..+|++ +.+|...-..-. . +-.=+..-.+.+..+..+...-...+..... .+.....
T Consensus 167 LR~npds-p~Lw~eyfrmEL--~-~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d 242 (568)
T KOG2396|consen 167 LRFNPDS-PKLWKEYFRMEL--M-YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFD 242 (568)
T ss_pred hhcCCCC-hHHHHHHHHHHH--H-HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHH
Confidence 9999999 554432211110 0 0000111111122221111100001100000 0000000
Q ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhccCCCCCchHHH
Q 001414 251 ---RKGMEKMQRAFEIYPYCAMALNYLANHFFFT-------------------GQHFLVEQLTETALAVTNHGPTKSHSY 308 (1082)
Q Consensus 251 ---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~~l~~~~~~~~~~~~~ 308 (1082)
+.--..+.-.....|.+|..+..++.-.+.. -.-.....+|+.++...... .....|
T Consensus 243 ~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~-sm~e~Y 321 (568)
T KOG2396|consen 243 FLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTE-SMWECY 321 (568)
T ss_pred HHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHH-HHHHHH
Confidence 0011112222344677777776666443221 01112344455444321100 000111
Q ss_pred HHHHHHHHH--cC-CHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCcHHHHHHHHH
Q 001414 309 YNLARSYHS--KG-DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF-EKVLEIYPDNCETLKALGH 384 (1082)
Q Consensus 309 ~~la~~~~~--~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~~l~~~p~~~~~~~~la~ 384 (1082)
..+-..++. .| ....-..+|+.+.......+....-|..++.++.......++...+ ...+. ++...|...-.
T Consensus 322 I~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~ 398 (568)
T KOG2396|consen 322 ITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGKMWQLKLQ 398 (568)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc---chHHHHHHHHH
Confidence 111111111 11 3444455555555543344555666666667766666544433322 23332 44455544444
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCC-HHHHHHHH--Hh--hcCCCCCHHHHHHHHHHHHHcCCH
Q 001414 385 IYVQL-GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD-TGAALDAF--KT--KAGEEVPIEVLNNIGVIHFEKGEF 458 (1082)
Q Consensus 385 ~~~~~-g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~-~~~Al~~l--~~--~~~~~~~~~~~~~la~~~~~~g~~ 458 (1082)
+.... .++.--...+...++..+.+...-...+. ..++ ....+..+ .. ....+....+-..+-..+.+.|-+
T Consensus 399 ~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~--~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~ 476 (568)
T KOG2396|consen 399 VLIESKSDFQMLFEELFNHLRKQVCSELLISWASA--SEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGY 476 (568)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHH--hhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcch
Confidence 33322 12211111111112222222111111100 1122 11111111 11 223334445555666777888889
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH--hcCChH
Q 001414 459 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE--QIHDTV 536 (1082)
Q Consensus 459 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~ 536 (1082)
.+|...|.+... .+|.....+-.+...-. ...+..
T Consensus 477 ~~ark~y~~l~~-------------------------------------------lpp~sl~l~r~miq~e~~~~sc~l~ 513 (568)
T KOG2396|consen 477 KKARKVYKSLQE-------------------------------------------LPPFSLDLFRKMIQFEKEQESCNLA 513 (568)
T ss_pred HHHHHHHHHHHh-------------------------------------------CCCccHHHHHHHHHHHhhHhhcCch
Confidence 999999988776 33333333333332211 112367
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001414 537 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582 (1082)
Q Consensus 537 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~ 582 (1082)
.+..+|..++.....+++.|...-..-...|..+.+-.++.++++.
T Consensus 514 ~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 514 NIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 7888999999888888999988888888899999998888888773
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0092 Score=65.34 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----cCCChHHHHHhhhhhhc---ccchHHHHHHHHHhhhcCCCCcHHHH
Q 001414 553 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 625 (1082)
Q Consensus 553 ~~a~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~d~~~~ 625 (1082)
++....+-..|....+|+.-+.+++.+-.+ -+..+.+.+.+|.++.+ .|+.++|+..+..++.....+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566667788888888888888877666 45677788888888888 88999999999997776666677788
Q ss_pred HHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH----HHh--
Q 001414 626 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ----EAA-- 699 (1082)
Q Consensus 626 ~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~----~~~-- 699 (1082)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++.-.|.......-++++. ...
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888 77664332111 12559999999999999996 44555566777776665433333333322 000
Q ss_pred -cCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 700 -SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 700 -p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
.......+.+.+-.++.+.+-.|++++|++.++++++.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 00000123333344444555555555555555555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.099 Score=60.84 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHHcCCHHHH
Q 001414 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 361 (1082)
Q Consensus 283 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 361 (1082)
....|..++....... |..+-..+..|+++...|+.++|+..|++++..-. -..-....++.++.++..+++|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445666666665443 55556666777777777777777777776663111 1122345577788888888888888
Q ss_pred HHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 001414 362 LTNFEKVLEIYPDNC-ETLKALGHIYVQLGQI-------EKAQELLRKAAKI 405 (1082)
Q Consensus 362 ~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~l~kal~~ 405 (1082)
..+|..+.+.+.-.. -..+..|.++...|+. ++|..+|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888887654433 3445667778888877 8888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.021 Score=56.61 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH---
Q 001414 519 VTVLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN--- 588 (1082)
Q Consensus 519 ~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~--- 588 (1082)
+..+..+|.+|..- .+++.|+..|+++-.-... --.+++..+......++|.+|+..|+++....-+++.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 34456678888765 8899999999998764432 2457888888889999999999999999887766554
Q ss_pred ----HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 589 ----ALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 589 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
.++.-|.|++...+.-.+...+++.....|.
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3455677777778887888888888777776
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0042 Score=68.53 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=134.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF- 279 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 279 (1082)
..+..-.++..+...-+++-.+||+++|+++.+++.|+.-.... ..++..+|+++++...... +....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~T-----i~Eae~l~rqAvkAgE~~l------g~s~~~ 240 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAST-----IVEAEELLRQAVKAGEASL------GKSQFL 240 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccC-----HHHHHHHHHHHHHHHHHhh------chhhhh
Confidence 34556677888899999999999999999999999998754444 6788888888877543221 11100
Q ss_pred -HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCH
Q 001414 280 -FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1082)
Q Consensus 280 -~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1082)
..|..-+ .... ........+...+|.+..+.|+.++|++.|..+++..+ ..+...++.+|..+++..+.|
T Consensus 241 ~~~g~~~e-------~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 241 QHHGHFWE-------AWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hcccchhh-------hhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCH
Confidence 0111000 0000 00112235567799999999999999999999997543 224566889999999999999
Q ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 001414 359 RSALTNFEKVLEI-YPDNCETLKALGHIYVQL-GQ---------------IEKAQELLRKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 359 ~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~l~kal~~~p~~~~~~~~l 416 (1082)
.++...+.+.-.+ -|+.+...+..+.+-.+. ++ -..|++.+.++++.+|..+..++.+
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 9999998886444 356666666666554332 11 2347788999999999887665544
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00025 Score=51.94 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1082)
|.+|+.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567778888888888888888888888888888888877764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0025 Score=73.96 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=124.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhc
Q 001414 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1082)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~ 123 (1082)
+.+....--.|+-+.+++.|..+..... ....+..+..|+.+..-.+-.... . .......|..++......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~-------i~~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN-------IRSPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKR 262 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC-------cchHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHh
Confidence 3444445557999999999998755311 112233333333333222222211 1 345667899999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001414 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1082)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1082)
.|+.+..++..|.++...|+.++|+..|+.++..... ...+++.++.++..+++|.+|..+|.+..+.+.-+....
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999988742221 245678899999999999999999999999887776777
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 001414 200 RLGIGLCRYKLGQL-------GKARQAFQRALQ 225 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~-------~~A~~~~~~al~ 225 (1082)
.+..|.|+..+|+. ++|...|.++-.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88899999999988 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.13 Score=61.32 Aligned_cols=240 Identities=15% Similarity=0.076 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
.+......+.......++.+|..+..++...-|. .....-..|.+....|+++.|.++.+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556677777788888888888877654433 1334445667788899999999999999988776543
Q ss_pred -----HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHh-----HhHHHHHHhhhhccCchHHhhH--HHHHHH
Q 001414 589 -----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL-----GNWNYFAALRNEKRAPKLEATH--LEKAKE 656 (1082)
Q Consensus 589 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~L-----g~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 656 (1082)
++..+|.+..-.|++.+|..+...+.+.....+.+.+..+ +.+ .... |. +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 6777888888899999999999988887555455433222 222 2222 42 222223
Q ss_pred HH----HHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCC-chHHHHHHHHHHHHcCCHHHHHHH
Q 001414 657 LY----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQ-MPDVWINLAHVYFAQGNFALAMKM 730 (1082)
Q Consensus 657 ~~----~~~l~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~-~~~~~~~la~~~~~~g~~~~Ai~~ 730 (1082)
.| .+-+...|...+..-..+.++...-+++.+..-....++.... ...+- ..-+++.|+.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33 3334455665566555555555444477776666666655411 01111 222345899999999999999999
Q ss_pred HHHHHHhhcCCC-C----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 001414 731 YQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLRA 770 (1082)
Q Consensus 731 ~~~al~~~~~~~-~----~~~~~~La~~~~~~g~~~eA~~~l~~a 770 (1082)
...+......+. . ..+.......+...|+...|...+.+.
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999988765442 1 122222333455679999998888763
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.025 Score=56.42 Aligned_cols=202 Identities=14% Similarity=0.136 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 001414 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL------VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1082)
Q Consensus 198 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1082)
..+..-+.+|...+++++|..++.++.+-..+|...| -..+.+...... +.++..+++++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k---lsEvvdl~eKAs---------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK---LSEVVDLYEKAS---------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHH----------
Confidence 3445555666666777777777777664433332211 111111111111 444444444433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCC---hhhHHHH
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYGL 348 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~l 348 (1082)
..|...|..+.|-..++++-. ....-++++|+++|++++..+...... ...+-..
T Consensus 99 ----~lY~E~GspdtAAmaleKAak------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 99 ----ELYVECGSPDTAAMALEKAAK------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred ----HHHHHhCCcchHHHHHHHHHH------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 345555655555555554432 234456788888888877644332222 2234456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Q 001414 349 GQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID----PRDAQAFIDLGE 418 (1082)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~----p~~~~~~~~la~ 418 (1082)
+.++.+...+.+|...+.+-... .|.....+.....+|+...++..|..+++...++. |.+..+..+|-.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 77888888898888777765432 34445566667777777789999999999877653 566777777777
Q ss_pred HHhcCCHHHHHHHHHh
Q 001414 419 LLISSDTGAALDAFKT 434 (1082)
Q Consensus 419 ~~~~~~~~~Al~~l~~ 434 (1082)
.|..|+.+..-..+..
T Consensus 237 ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 237 AYDEGDIEEIKKVLSS 252 (308)
T ss_pred HhccCCHHHHHHHHcC
Confidence 7788888887777665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00017 Score=52.83 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 786 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~ 786 (1082)
.+++.||++|...|++++|+++|+++++.+|+|+.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666666666666666666666666666666553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.15 Score=55.00 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=47.8
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 001414 387 VQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKG-EFESAHQS 464 (1082)
Q Consensus 387 ~~~g~~~~A~~~l~kal~~~-p~~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~ 464 (1082)
...|+++.|..++.++-... ..++.....++ .+++++|......+ +++.|..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La-------------------------~~~yn~G~~l~~~~~~~~~a~~w 58 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELA-------------------------RVCYNIGKSLLSKKDKYEEAVKW 58 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHH-------------------------HHHHHHHHHHHHcCCChHHHHHH
Confidence 56788999999998887665 44555555554 46888999999999 99999999
Q ss_pred HHHHHhc
Q 001414 465 FKDALGD 471 (1082)
Q Consensus 465 ~~~al~~ 471 (1082)
++++++.
T Consensus 59 L~~a~~~ 65 (278)
T PF08631_consen 59 LQRAYDI 65 (278)
T ss_pred HHHHHHH
Confidence 9999874
|
It is also involved in sporulation []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=78.58 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+...|..|+.+|.+++.++|+.+..+-.++..++..++|..|+.-+.++++.+|....+|+..|.+....+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHH
Q 001414 186 KRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~ 207 (1082)
+....+.|+. +.+...+..|-
T Consensus 96 ~~~~~l~Pnd-~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 96 EKVKKLAPND-PDATRKIDECN 116 (476)
T ss_pred HHhhhcCcCc-HHHHHHHHHHH
Confidence 8888888887 55555554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.027 Score=56.28 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred HhcCChHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc------CCChHHHHHhhhhh
Q 001414 530 EQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLE 597 (1082)
Q Consensus 530 ~~~g~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg~~~ 597 (1082)
....+++.|+++|++++..-... .+.+-..+.++.+...+.+|...+.+-.... |+....+.....+|
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34466777888887776643221 3445556677888888888877766644322 33333455556667
Q ss_pred hcccchHHHHHHHHHhhhcC
Q 001414 598 LKNDDWVKAKETFRAASDAT 617 (1082)
Q Consensus 598 ~~~g~~~~A~~~~~~al~~~ 617 (1082)
+...+|..|..+|+...+..
T Consensus 201 L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hhHHHHHHHHHHhcchhcCc
Confidence 77778999999988866543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.063 Score=60.68 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+..+...|+..+|+..+...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345567778888888888888888888887754322 222567777788888888888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.24 Score=53.46 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhh----C------CC----CHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 199 IRLGIGLCRYKLG-QLGKARQAFQRALQL----D------PE----NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 199 ~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~------p~----~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
+++.+|......+ +++.|..++++++++ . |+ ...++..++.+++..+......+|...++.+-..
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3444444444444 555555555554444 1 11 1234667788888888777788888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.|+.+.++..-..++...++.+.+...+.+++...................+.. .....|...+...+.
T Consensus 117 ~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 117 YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHH
Confidence 888887776666666667888888888888887654333333333333333333 233456666655554
|
It is also involved in sporulation []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0038 Score=60.28 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=86.8
Q ss_pred HHHHHHHhhcCCCHHHH---HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 656 ELYTRVIVQHTSNLYAA---NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 732 (1082)
Q Consensus 656 ~~~~~~l~~~p~~~~a~---~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~ 732 (1082)
....+....+|.+.++. ..++..+.+.+++++|+..++.++....++.+ .+.+-.+||.+.+.+|++++|+..+.
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l--k~l~~lRLArvq~q~~k~D~AL~~L~ 150 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL--KALAALRLARVQLQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH--HHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 33444555566666554 45688899999999999999999865532211 24566889999999999999999877
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 733 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 733 ~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
..-.. .=.+.+....|.++...|+..+|+..|.+++...+++
T Consensus 151 t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 151 TIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 65432 1124456678999999999999999999999998554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.056 Score=59.36 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHH
Q 001414 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQR-ALQLDPENVEALV 235 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~-al~~~p~~~~a~~ 235 (1082)
....+-.+|....+|+.-+.+.+.+-.+ -++. ..+.+.+|.++.+ .|+.++|+..+.. +....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344444566666666666666655443 1222 4556667777776 7777777777777 3344455667777
Q ss_pred HHHHHHHHh------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHH
Q 001414 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1082)
Q Consensus 236 ~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 309 (1082)
.+|.+|... .+....++|+..|.+++..+|+... -.+++.++...|.......-+.++. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~-------------~ 287 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKIG-------------V 287 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHHH-------------H
Confidence 777666432 1234478899999999999865433 3344444444444222111111110 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001414 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (1082)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (1082)
.+.......|.. ......+.+-.++.+.+-.|++++|+..++++++..|...
T Consensus 288 ~l~~llg~kg~~---------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 288 KLSSLLGRKGSL---------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHhhccc---------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111112222211 1223334445566677777888888888888877765543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.28 Score=56.12 Aligned_cols=231 Identities=18% Similarity=0.114 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001414 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----------HIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1082)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la----------~~~~~~g~~~~A~~~l~kal~~~p~~~ 410 (1082)
.+..|..++......-.++-|...|-+.-. +|. ......|+ .+-.--|++++|...|-.+-+.+
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 456677777777777677777666655422 121 12222233 33334478888888775542221
Q ss_pred HHHHHHHH-HH-hcCCHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001414 411 QAFIDLGE-LL-ISSDTGAALDAFKTK---AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485 (1082)
Q Consensus 411 ~~~~~la~-~~-~~~~~~~Al~~l~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 485 (1082)
|+. ++ ..|++-...++++.- ........++.++|..+.....+++|.++|...-....
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~------------ 827 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN------------ 827 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh------------
Confidence 222 22 677777777777762 22333456889999999999999999999987543110
Q ss_pred hhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001414 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 565 (1082)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 565 (1082)
.... +-..+.|..++.... .-|.+...+-.+|..+...|..++|.+.|-+.- .|. + .......
T Consensus 828 ---~~ec---ly~le~f~~LE~la~---~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---Av~tCv~ 890 (1189)
T KOG2041|consen 828 ---QIEC---LYRLELFGELEVLAR---TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---AVHTCVE 890 (1189)
T ss_pred ---HHHH---HHHHHhhhhHHHHHH---hcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---HHHHHHH
Confidence 0000 011112222221111 234455566666777777777777766554321 111 1 1122344
Q ss_pred hcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHh
Q 001414 566 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613 (1082)
Q Consensus 566 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 613 (1082)
.+++.+|.++.+... -|.-.......+.-++..++..+|++..+++
T Consensus 891 LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 555666655544321 1221222222333345556666666666654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0039 Score=61.85 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHH
Q 001414 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521 (1082)
Q Consensus 442 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (1082)
..++..-|.-++..|+|.+|...|..|+..-...... ..+... .-+++.......
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lk-EkP~e~------------------------eW~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLK-EKPGEP------------------------EWLELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhc-cCCCCh------------------------HHHHHHHhhhHH
Confidence 3567778899999999999999999998632111000 000000 000122335568
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
+.|++.|+...|++-++++....++..+|.+..+|++.|.+....=+..+|...|.+++.++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8899999999999999999999999999999999999999999999999999999999999987444
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.83 Score=53.15 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=150.9
Q ss_pred hcCChHHHHHHHHHHHHhC--CC----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHH-HHHhhhhhhcccch
Q 001414 531 QIHDTVAASVLYRLILFKY--QD----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA-LSMLGDLELKNDDW 603 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~--p~----~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~ 603 (1082)
..|+...|..++.-.+-.. |. -..+++.+|.++...|.- ..+++...++...+.+.. -..||.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4577888888877766542 11 145788888888777765 788888887766543322 22455555555542
Q ss_pred HHHHHHHHHhhh---cCCC-CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHH-HHHHHHhhcCCCHHHHHHHHHH
Q 001414 604 VKAKETFRAASD---ATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE-LYTRVIVQHTSNLYAANGAGVV 678 (1082)
Q Consensus 604 ~~A~~~~~~al~---~~~~-~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~la~~ 678 (1082)
. .+.|++.-. .... .-..+-++||-+ .+.. . ..+|++ .+.-+-+.....+.--.++|..
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~-mlGt------------~-~~eaiedm~~Ya~ETQHeki~RGl~vGia 510 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLL-MLGT------------A-NQEAIEDMLTYAQETQHEKIIRGLAVGIA 510 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhH-hhCc------------C-cHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Confidence 2 233333322 2111 112344556654 3322 1 234444 3333333333344445567888
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 001414 679 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 758 (1082)
Q Consensus 679 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g 758 (1082)
+.-.|+-+.|..+..+++... ++. -...-.+.+|..|.-.|+..--..++.-++.. .+.|+.-..-+|.-+....
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpi--lR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPI--LRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chh--hhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEec
Confidence 888899999999999887643 111 12335578889999999875555555555543 2333443334444444556
Q ss_pred cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 759 QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 759 ~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
+++.+..+..-.-+. .|+.++|..|+++- +-+|=.++.+|+.+++-|-...
T Consensus 586 dp~~~~s~V~lLses--~N~HVRyGaA~ALG----------------IaCAGtG~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES--YNPHVRYGAAMALG----------------IACAGTGLKEAINLLEPLTSDP 636 (929)
T ss_pred ChhhchHHHHHHhhh--cChhhhhhHHHHHh----------------hhhcCCCcHHHHHHHhhhhcCh
Confidence 677776666544333 47889999888753 5667778999999999997633
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=1.3 Score=55.29 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 107 EEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAK----G---EVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1082)
+..|++|+..|++....-|... ++.+..|..++.+ | .+.+|+..|++. .-.|.-+.-|++.|.+|.+.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhh
Confidence 4667788888887777777543 4556666666654 2 366777777654 335566777788888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCh
Q 001414 177 RYSDSLEFYKRALQVHPSCP 196 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~ 196 (1082)
+|++-++.|.-+++..|+.|
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCC
Confidence 88888888888888877774
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00062 Score=74.67 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~ 212 (1082)
..+..++..+.|+.|+..|.+++.++|+++..+-.++..+++.++|..|+.-+.++++.+|.. ...|+..|..+..++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHH
Confidence 456677778888889999999999888888888888888888888999988888888888888 6778888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001414 213 LGKARQAFQRALQLDPENVEALVALAVMDL 242 (1082)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1082)
+.+|+..|+....+.|+.+.+...+..+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 888888888888888888887776665543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=65.69 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=121.6
Q ss_pred CHHHHHHHHHhcCCChhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001414 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1082)
Q Consensus 25 ~~~~l~~~l~~e~~~~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~--y~~~g~~~~~ 102 (1082)
||..|+.+|...|-.++..++++..+..+|+...|..++++|+-. | ++. ++.....+ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 899999999999999999999999999999999999999998521 1 110 00000000 00111111
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCC
Q 001414 103 QREKEEHFILATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (1082)
Q Consensus 103 ~~~k~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a-~~~la~~~~~~g~ 177 (1082)
.--..+.|.. +++.....+.++|-+..|+++++-+++++|. ++.+ ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 0001122332 4455678888999999999999999999998 6544 4455555677888
Q ss_pred hHHHHHHHHHHHHhCC-C---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 001414 178 YSDSLEFYKRALQVHP-S---CPGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p-~---~~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1082)
|+--+.+++....... + ..+..-+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9888888887655211 1 1245678888999999888 7888888888887764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.15 Score=55.83 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1082)
.|++..|-+-+..+++..|..|......+.+.-..|.|+.|...+..+-..-.....+...+-...+..|+++.|+..-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 47777888888889999999999999999999999999999999877765544445566666677889999999999988
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 001414 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1082)
Q Consensus 187 ~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1082)
-++.-.-.. +.+....+-..-.+|-+++|...|++++.++|....-|
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888766555 44444455566778999999999999999988644333
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0042 Score=61.65 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLE--------ADRDN----------VPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--------~~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
.++...|+-++..|+|.+|...|..++. ..|.. ...+++.+.|+...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4666778888888888888888887753 23433 34456666667777777777777777777
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 191 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
..|.+ ..+++..|.+....=+..+|...|..+|+++|.-
T Consensus 259 ~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 77766 5566666766666666777777777777766643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=45.26 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
+.+++.+|.+++..|++++|+..|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566677777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.049 Score=56.59 Aligned_cols=152 Identities=18% Similarity=0.076 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~ 206 (1082)
....-+..+.-....|++.+|...|..++...|.+..+.+.+|.++...|+.+.|..++...-.................
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34455666777788888888888888888888888888888888888888888887776653222222100000001122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTG 282 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 282 (1082)
+.+.....+. ..+++.+..+|++..+-+.++..+...|+ .+.|+..+-..++.+- .+..+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222221 23444455677777777777777777777 7777776666666543 23334444444443333
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.13 Score=52.04 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1082)
.|+++-..++.++|.+-.+|..+-.++-..+ +..+-+.++..++..+|.|...|..+-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776655 5788899999999999999999999989998999888 8899999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cc--HHhHHHHHHHHHHHHHhCCC
Q 001414 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NE--AAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 190 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~--~~~~~~A~~~~~~al~~~p~ 266 (1082)
..+..+ -.+|...--|+...+.++.-+.+...+++.+-.|-.+|...-.+.... |- ....+.-+.+..+.+...|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988777 667888888888888899999999999999888877876543332221 11 12356677888899999999
Q ss_pred CHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 001414 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1082)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~~l 295 (1082)
+..+|+.|..++.. .| .+.....+...+.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999988875 44 2334444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00047 Score=46.95 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001414 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1082)
Q Consensus 117 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 148 (1082)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.03 E-value=1.2 Score=52.83 Aligned_cols=239 Identities=10% Similarity=0.021 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHcCCChHHHHHhhhh
Q 001414 518 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDL 596 (1082)
Q Consensus 518 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 596 (1082)
....+..+.......|.+..-...+++++...+.....|+..+...- ..+-...+...+..++...|-...+|...-..
T Consensus 311 ~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallA 390 (881)
T KOG0128|consen 311 KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLA 390 (881)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHH
Confidence 34455556666667788888888888888888888888877766542 33444455566666666666655555443333
Q ss_pred hhcccc-hHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhcc----CchHHhhHHHHHHHHHHHHHhhc-CCCHH
Q 001414 597 ELKNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR----APKLEATHLEKAKELYTRVIVQH-TSNLY 670 (1082)
Q Consensus 597 ~~~~g~-~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~----~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 670 (1082)
+.+.+. ...-...+.+.+... +.|.+-.|+...+..+. .-..-+..|..|...|....... -....
T Consensus 391 leR~re~~~vI~~~l~~~ls~~--------~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~ 462 (881)
T KOG0128|consen 391 LERNREEITVIVQNLEKDLSMT--------VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTE 462 (881)
T ss_pred HHhcCcchhhHHHHHHHHHHHH--------HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 333332 222222333332211 00111101111001110 01112366778888777766552 12233
Q ss_pred HHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHH
Q 001414 671 AANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILL 748 (1082)
Q Consensus 671 a~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~ 748 (1082)
.+...|.+.+ .+++.+.|+.++..+....-+ .....|+....+-...|+...|..++..|+..-..+.+ -.++.
T Consensus 463 ~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~ 538 (881)
T KOG0128|consen 463 VLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLE 538 (881)
T ss_pred HHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHH
Confidence 4445566654 468999999999888765531 23337888888888889999999999999986434443 45555
Q ss_pred HHHHHHHHhccHHHHHHHHH
Q 001414 749 YLARTHYEAEQWQDCKKSLL 768 (1082)
Q Consensus 749 ~La~~~~~~g~~~eA~~~l~ 768 (1082)
..-+.....|.++.......
T Consensus 539 ~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 539 FFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHHHhccccHHHHhhhHH
Confidence 55566666677776655443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00058 Score=46.49 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001414 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 728 (1082)
Q Consensus 692 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai 728 (1082)
|+++++..| +++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P-----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555554 44555555555555555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.55 Score=52.99 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhcCC---
Q 001414 666 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN--- 741 (1082)
Q Consensus 666 p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~-~~~~~--- 741 (1082)
......+..++.+....|+++.|...+.++....+.... ..|.+.+..+.++...|+..+|+..++..+. .+...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 345667788899999999999999999999886632211 2578889999999999999999999999888 22211
Q ss_pred ---------------------CC-------HHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 001414 742 ---------------------TD-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 742 ---------------------~~-------~~~~~~La~~~~~~------g~~~eA~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
.. ..++..+|...... +..+++...|..++++.|.....++++|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 01 44555566665566 777888999999999999999999999998
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001414 788 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827 (1082)
Q Consensus 788 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~A~~~f~~l~~~~ 827 (1082)
+.......-.... ...+ .....-+..|+..|-+-...+
T Consensus 302 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 302 NDKLLESDPREKE-ESSQ-EDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHhhhhccc-ccch-hHHHHHHHHHHHHHHHHHhhC
Confidence 6665542221111 1111 233445566666665555544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.064 Score=56.19 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHH
Q 001414 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 784 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nl 784 (1082)
.+.-|---|+-|++.++|..|+..|.+.|+.-...++ ...|.+.+-|.+..|+|..|+.-..+++.+.|.+...++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3445566788899999999999999999987433344 56677889999999999999999999999999998877776
Q ss_pred HHH
Q 001414 785 GVA 787 (1082)
Q Consensus 785 a~~ 787 (1082)
|.|
T Consensus 160 Akc 162 (390)
T KOG0551|consen 160 AKC 162 (390)
T ss_pred hHH
Confidence 665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.077 Score=55.17 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HH-
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LA- 238 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la- 238 (1082)
....-+..+.-....|++.+|...|..++...|.+ ..+.+.++.||...|+.+.|...+...-...... .+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHHHH
Confidence 45566777888899999999999999999999999 8889999999999999999999887643222211 1111 11
Q ss_pred -HHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 001414 239 -VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1082)
Q Consensus 239 -~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 317 (1082)
.++.+... .. -...+.+.+..+|++..+.+.++..+...|+.+.|...+-.++.... ...+..+...+..++..
T Consensus 210 i~ll~qaa~---~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAA---TP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhc---CC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCcHHHHHHHHHHHh
Confidence 22222221 11 12346667778898988888888888888888888887777765421 12223444444444444
Q ss_pred cC
Q 001414 318 KG 319 (1082)
Q Consensus 318 ~g 319 (1082)
.|
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 44
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.97 E-value=1.4 Score=52.83 Aligned_cols=268 Identities=15% Similarity=0.047 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001414 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1082)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1082)
.+....-+..+...|...+|+...-.|-++.. -..++-..++-....++.. .+..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~----------aa~lle~~~~~L~~~~~ls---------------ll~~ 401 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEM----------AADLLEQLEWQLFNGSELS---------------LLLA 401 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHH----------HHHHHHhhhhhhhcccchH---------------HHHH
Confidence 56777777888889999999988777754311 1223333344444444333 2222
Q ss_pred HHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCChHHHHHHH
Q 001414 120 ASRIDM-----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--N-------VPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 120 al~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
++..-| .+|...+..+......+++.+|..++.++...-|. . ....-..|.+....|+++.|..+.
T Consensus 402 ~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~la 481 (894)
T COG2909 402 WLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLA 481 (894)
T ss_pred HHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222333 35566777888899999999999999988766443 1 244566788889999999999999
Q ss_pred HHHHHhCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHH--HHHHHHHHHhccHHhHHHHHH
Q 001414 186 KRALQVHPSC----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD----PENVEAL--VALAVMDLQANEAAGIRKGME 255 (1082)
Q Consensus 186 ~~al~~~p~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~--~~la~~~~~~~~~~~~~~A~~ 255 (1082)
+.++..-|.. ...++..+|.+..-.|++.+|+.+...+.+.. .-...+| ...+.+...+|. ..+.+...
T Consensus 482 r~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq-~~~a~~~~ 560 (894)
T COG2909 482 RLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ-VARAEQEK 560 (894)
T ss_pred HHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence 9999988776 23456678888899999999999998887763 2222333 333555666663 11333333
Q ss_pred HHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC---CCCch-HHHHHHHHHHHHcCCHHHHHHH
Q 001414 256 KMQRAFE----IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPTKS-HSYYNLARSYHSKGDYEKAGLY 327 (1082)
Q Consensus 256 ~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~-~~~~~la~~~~~~g~~~~A~~~ 327 (1082)
.+..... ..|-........+.++...-+++.+..-....+..... .+..+ -.++.++.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3333222 22322222222222222222244444333333322111 11111 1223566666666666666666
Q ss_pred HHHHHH
Q 001414 328 YMASVK 333 (1082)
Q Consensus 328 ~~~al~ 333 (1082)
+..+..
T Consensus 641 l~~~~~ 646 (894)
T COG2909 641 LDELER 646 (894)
T ss_pred HHHHHH
Confidence 666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.95 E-value=2.8 Score=55.81 Aligned_cols=409 Identities=13% Similarity=0.079 Sum_probs=222.0
Q ss_pred HHHHHHHHhccHHhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHH
Q 001414 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY----CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (1082)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 311 (1082)
.++.+-++.+. +..|+-++++. ...+. ....+..+-.+|...++++....+....... ......
T Consensus 1388 tLa~aSfrc~~---y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--------~sl~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKA---YARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--------PSLYQQ 1455 (2382)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--------ccHHHH
Confidence 56667777777 89999998885 22211 1233444555888999998887777642211 345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcC
Q 001414 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG-HIYVQLG 390 (1082)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g 390 (1082)
...+...|++..|..+|+++++ ..|+....+.+.-......|.+...+.+.+-.....++...-++.++ .+-.+.+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc
Confidence 6677888999999999999998 66777777888888888999999999988887766665555555443 3346777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---hcCCHH---HHHHHHHhh--------cCCCCCHHHHHHHHHHHHHcC
Q 001414 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL---ISSDTG---AALDAFKTK--------AGEEVPIEVLNNIGVIHFEKG 456 (1082)
Q Consensus 391 ~~~~A~~~l~kal~~~p~~~~~~~~la~~~---~~~~~~---~Al~~l~~~--------~~~~~~~~~~~~la~~~~~~g 456 (1082)
+++.-..++. ..+-.+..+.. +|.++ ...+.- ..++..+.. .........|..+..++...
T Consensus 1533 qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~- 1607 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL- 1607 (2382)
T ss_pred chhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-
Confidence 7776655543 11111111111 34333 111111 122222210 00001111111111111111
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHh--hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001414 457 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ--FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534 (1082)
Q Consensus 457 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 534 (1082)
+.+..+..+.+.-.. .............+........ .....+...+...............+|...|++....|.
T Consensus 1608 el~~~~~~l~~~s~~--~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYD--EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHHHhhccCcc--ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111111111100000 0000000000000000000000 001111111111111112455678999999999999999
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCC--------hH---------HHHHhhhhh
Q 001414 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--------PN---------ALSMLGDLE 597 (1082)
Q Consensus 535 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--------~~---------~~~~lg~~~ 597 (1082)
++.|...+-.+.+.. -+.++...|..+...|+...|+..+++.+..+-.+ |. +...++...
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~ 1763 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYL 1763 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHH
Confidence 999998888887765 46889999999999999999999999999765222 11 233344444
Q ss_pred hcccc--hHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhcc-CchHHhhHHHH---HHHHHHHHHhhcCCCHHH
Q 001414 598 LKNDD--WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR-APKLEATHLEK---AKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 598 ~~~g~--~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~-~~~~~~~~~~~---A~~~~~~~l~~~p~~~~a 671 (1082)
...|+ ...-++.|..+.+..|. ....++.+|. |+...-...+ +.....|++.. ++-.|.+++..+....+.
T Consensus 1764 ~es~n~~s~~ilk~Y~~~~ail~e-we~~hy~l~~--yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1764 EESGNFESKDILKYYHDAKAILPE-WEDKHYHLGK--YYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHhcchhHHHHHHHHHHHHHHccc-ccCceeeHHH--HHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH
Confidence 44444 34556778888887764 2223334553 3333222222 22223466665 677777887776555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.027 Score=54.65 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001414 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1082)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1082)
..++..+...|++++|...++.++....+..-...+-..|+.+++..|.++.|+..+...... .-.+......|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence 344555555555555555555555321111111233445555666666666665555543221 0012234445666666
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 001414 389 LGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 389 ~g~~~~A~~~l~kal~~~p 407 (1082)
.|+..+|+..|.+++...+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALESDA 190 (207)
T ss_pred cCchHHHHHHHHHHHHccC
Confidence 6666666666666665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.86 E-value=3.2 Score=55.23 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHH-HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHh
Q 001414 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (1082)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~-~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~ 122 (1082)
-++|.+=++.|.|..|+-.+|+-..... .... -..+..+-.+|...+..+. ....... ..
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDg-----------V~Gv~~~-r~ 1447 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDG-----------VEGVSAR-RF 1447 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcch-----------hhhHHHH-hh
Confidence 3678888888889999998888411111 1111 2233444446766665551 1111110 12
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001414 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1082)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1082)
.+| .+...-......|++..|..+|+++++.+|+....+.+.-...+..|.+...+...+-.....+.........
T Consensus 1448 a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1448 ADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred cCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHH
Confidence 223 3455555666677888888888888888877777777777777777777777776665554444442222222
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 001414 203 IGLCRYKLGQLGKARQAF 220 (1082)
Q Consensus 203 lg~~~~~~g~~~~A~~~~ 220 (1082)
--.+-|++++++.-....
T Consensus 1524 ~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHhhhcchhhhhhhh
Confidence 233446777666655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0022 Score=43.87 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
+++.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.086 Score=58.17 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHH
Q 001414 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1082)
.+.-+.+|++|++.+|++ ..+++.+-.+..+....+....-|++++..+|++...|..+.......-..-.+......|
T Consensus 47 ~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345577888888888877 6667777777777778888888888888888888887776555443321101145555555
Q ss_pred HHHHH
Q 001414 258 QRAFE 262 (1082)
Q Consensus 258 ~~al~ 262 (1082)
.+++.
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.003 Score=43.15 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
+|+.+|.+++..|++++|+..|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.7 Score=50.19 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1082)
+++|...|-.+-.. -....++...|+|-.+.++++..-. ...+.....++..+|..+.....++.|.++|.
T Consensus 750 feeaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766543222 1233456677888777777654321 12233446789999999999999999999998
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
..-. .-+++.+++....|++- +.+...-|++...+-.+|..+...|.-++|.+.|-+.- .|.
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk- 882 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK- 882 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-
Confidence 7642 23456777777777653 44445568899999999999999999999999886542 221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001414 410 AQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 468 (1082)
Q Consensus 410 ~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 468 (1082)
..+..+...+++.+|.++.++... +....+....+.-+...++.-+|+...+++
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~l-~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQL-PQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 112223366778888888776322 222233333444566778888888888876
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.4 Score=55.05 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhhCCCCCChhhHHH
Q 001414 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1082)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1082)
-.++...+.|+.|+..|+++....+.....-++.+..|.....+ | .+.+|+..|++.- ..+..+.-|++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHHHh
Confidence 34566667788888888887766655455556777777766543 2 4667777776665 45666777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~l~kal~~~p~~ 409 (1082)
.|.+|...|++++-+++|.-+++.+|..|.+-...-.+-.++ .+...|....--++..-|..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 888899999999999999999988888776544443333332 12334444444455555544
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.014 Score=60.95 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg 204 (1082)
..+-.-|.-|+...+|..|...|...|+..-.+ ...|..+|.+.+..|+|..|+.-+.+++..+|.+ ...++.-+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhh
Confidence 345556888888888888888888888764332 5567888888888888988988888888888888 67788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Q 001414 205 LCRYKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
.|++.+.++..|..+.+..+.++-+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888888887766443
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.32 Score=49.41 Aligned_cols=147 Identities=11% Similarity=0.010 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-hc-----CHHHHHHHHHHHHHHcCCChHHH
Q 001414 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNAL 590 (1082)
Q Consensus 517 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~ 590 (1082)
.+--++...--+....+.++.-+.+...+++.+-.+-.+|...-.+... .| ..+.-+.+..+.+.+.|++..+|
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW 224 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW 224 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 4445555555666666778888888888887776666666544333222 12 23445667778888889999998
Q ss_pred HHhhhhhhc-cc--chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHH-hhcC
Q 001414 591 SMLGDLELK-ND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHT 666 (1082)
Q Consensus 591 ~~lg~~~~~-~g--~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p 666 (1082)
..+.-++.. .| .+..-.......+...+...++.+-.|..+ |.......+...+. -..+|..+|+.+- +.+|
T Consensus 225 nYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~~---~a~~a~~ly~~La~~~Dp 300 (318)
T KOG0530|consen 225 NYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAEE---LARKAVKLYEDLAIKVDP 300 (318)
T ss_pred HHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccchH---HHHHHHHHHHHHhhccCc
Confidence 888777665 44 133344444444433455577777777777 63322222221111 1224677776654 5666
Q ss_pred C
Q 001414 667 S 667 (1082)
Q Consensus 667 ~ 667 (1082)
-
T Consensus 301 i 301 (318)
T KOG0530|consen 301 I 301 (318)
T ss_pred H
Confidence 4
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.33 Score=53.15 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=91.7
Q ss_pred chHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHH
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLA 680 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~ 680 (1082)
+...|...|..+.... .+.+...||.+ |.... . . ..++.+|..+|.++....-.. ..+.+.+|.+|.
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~-~~~G~-g-v------~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~ 159 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLM-YANGR-G-V------PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL 159 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHH-HhcCC-C-c------ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 3555666665433322 34444555555 44321 0 0 035666666666666554332 334555666655
Q ss_pred hcC-------CchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 001414 681 EKG-------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKMYQNCLRKFYYNTDAQILLY 749 (1082)
Q Consensus 681 ~~~-------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~----g~~~~Ai~~~~~al~~~~~~~~~~~~~~ 749 (1082)
... +...|...|.++.... ++.+.+++|.+|..- .++.+|+.+|.++... .. ....+.
T Consensus 160 ~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~---g~-~~a~~~ 228 (292)
T COG0790 160 SGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ---GD-GAACYN 228 (292)
T ss_pred cChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CC-HHHHHH
Confidence 531 2247888888887765 578888999888663 3888999999998886 22 778888
Q ss_pred HHHHHHHhc---------------cHHHHHHHHHHHHhhCCCC
Q 001414 750 LARTHYEAE---------------QWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 750 La~~~~~~g---------------~~~eA~~~l~~al~~~p~~ 777 (1082)
++ +++..| +...|...+..+....+..
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 88 777666 5555666666655554433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=57.91 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=109.3
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CC------------CC---HHHHHHHH
Q 001414 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE---------A-----DR------------DN---VPALLGQA 169 (1082)
Q Consensus 119 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---------~-----~p------------~~---~~a~~~la 169 (1082)
..++.+|.+..+++.++.++..+|++..|..++++++- . ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34578999999999999999999999999999888862 1 11 22 24566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q 001414 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1082)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1082)
..+.+.|-+..|+++.+-.+.++|. ++-.+++.+-....+.++++--+..++........ -+..-+..+..++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7888899999999999999999998 77778888888888889988888777765542111 12334455555555
Q ss_pred hccH------------HhHHHHHHHHHHHHHhCCCCH
Q 001414 244 ANEA------------AGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 244 ~~~~------------~~~~~A~~~~~~al~~~p~~~ 268 (1082)
.++. ...+.|-..+.+++...|.-.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5541 112677778888887776443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.43 Score=52.18 Aligned_cols=187 Identities=19% Similarity=0.118 Sum_probs=133.3
Q ss_pred hcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhc----ccc
Q 001414 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 602 (1082)
Q Consensus 531 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 602 (1082)
..+.+..|...+..+-.. ....+...++.++... .+..+|..+|..+ ....++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccC
Confidence 456777777777776552 2236777777777654 3678899999944 445678899999999887 448
Q ss_pred hHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 001414 603 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 682 (1082)
Q Consensus 603 ~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 682 (1082)
..+|..+|.++.......-..+...+|.+ |.... .. ..-..+...|...|.++.... ++.+...+|.+|..-
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QA----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hh----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999987754224456777777 55531 00 000134568999999888776 778888899888763
Q ss_pred ----CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 001414 683 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---------------NFALAMKMYQNCLRK 737 (1082)
Q Consensus 683 ----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g---------------~~~~Ai~~~~~al~~ 737 (1082)
.++.+|..+|.++.+.. + +...++++ +++..| +...|..+|..+...
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 48899999999999977 3 78899999 777666 555556665555543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.027 Score=49.45 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCC
Q 001414 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1082)
Q Consensus 46 ~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p 125 (1082)
.|..++.+|++-.|++|++..+..-... . ...-++..-|.++..++....+...|.-.+.-++..|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5788999999999999999986542111 0 111355666888888888777788888899999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1082)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 157 (1082)
..+..++.+|.-+-..--|+++....++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888777777788888888887765
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=2.4 Score=46.78 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=98.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001414 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1082)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 217 (1082)
.+..|+.-.|...+..++...|..+......+.+....|.|+.++..+.-+-..-... ......+-.....+|+++.|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHHH
Confidence 4556888888888889999999999999999999999999999999887665544333 233444556677899999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCH
Q 001414 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1082)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1082)
..-.-++.-.-++++....-+......|- +++++-.+++.+.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhc
Confidence 99888887766677766555555555555 8999999999999987543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.095 Score=50.46 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
.++..++..+...|++..|+..+++++..+|.+ ..++..+..+|...|+...|+..|.++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344556666677777777777777777777777 66677777777777777777777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.24 Score=54.62 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=64.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcc---------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001414 219 AFQRALQLDPENVEALVALAVMDLQANE---------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1082)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1082)
-|++.+..+|.+..+|+.+..+.-..-. ....+.-+.+|++|++.+|++...+..+........+.+....
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555566666666666666544433211 1224556667777777777777777776666666666666666
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1082)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1082)
..+.++...+..+.....|...-...+..-.+......|.+++..
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 666666543222221222222222222334566777777776653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.012 Score=39.79 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
+++.+|+++...|++++|+.+|++++..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=4.2 Score=47.69 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHH
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~ 117 (1082)
.-+.....||..|.|++|+..--.+-.. ..+.|+....+..+..+...+.-....-. .+..--++-..++
T Consensus 61 AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~------~~~~iD~rL~~iv 134 (929)
T KOG2062|consen 61 AALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPE------QKSPIDQRLRDIV 134 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCcc------ccCCCCHHHHHHH
Confidence 3467889999999999999987666311 11112211122222222222211111000 0011111234455
Q ss_pred HHHHhcCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001414 118 NKASRIDMHEPSTWVGKGQLLL--AKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1082)
Q Consensus 118 ~~al~~~p~~~~~~~~~a~~~~--~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1082)
++++...-.+-..+..+|..+- +.+-+++| +++.+ +++...++.+.........|. .+.+..+++..-
T Consensus 135 ~rmi~kcl~d~e~~~aiGia~E~~rld~ie~A------il~~d~~~~~~~yll~l~~s~v~~~efR--~~vlr~lv~~y~ 206 (929)
T KOG2062|consen 135 ERMIQKCLDDNEYKQAIGIAFETRRLDIIEEA------ILKSDSVIGNLTYLLELLISLVNNREFR--NKVLRLLVKTYL 206 (929)
T ss_pred HHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHH------hccccccchHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHc
Confidence 5555555555555555554432 22333443 22222 344555566666655533332 233333333322
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001414 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1082)
Q Consensus 194 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 225 (1082)
..+..-++.+..|+..+.+...+...+++.++
T Consensus 207 ~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 207 KLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred cCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 22112367899999999999999999999987
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0031 Score=66.07 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001414 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1082)
|+.|+.+|..++.++|.....+..++.+++..++...|+.-|..++.++|+....+-..+.....+|++.+|...+..+.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhC
Q 001414 190 QVH 192 (1082)
Q Consensus 190 ~~~ 192 (1082)
+++
T Consensus 210 kld 212 (377)
T KOG1308|consen 210 KLD 212 (377)
T ss_pred hcc
Confidence 443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0032 Score=65.97 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
.+.-.+..|.++.|+..|..++.++|.+...+..++.+++.+++...|+.-|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556677889999999999999999998888899999999999999999999999999888 56677788888889999
Q ss_pred HHHHHHHHHHHhhCC
Q 001414 214 GKARQAFQRALQLDP 228 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p 228 (1082)
.+|...|..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999988888764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.14 Score=49.18 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
+...++..+...|+++.|+..+.+++..+|.+-.++..+..+|...|+...|+..|.++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455667777788888888888888888888888888888888888888888888877644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.012 Score=40.07 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 775 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p 775 (1082)
.+++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455556666666666666666666665555
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.012 Score=40.76 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 710 VWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
+|.+||.+|..+|+|++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888887776644
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.087 Score=47.72 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhh
Q 001414 707 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g---~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
.....++++|++.... +..+.|.+++..++.-+....-+.+|+|+..+++.|+|+.++++....++..|+|+.+.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4678899999999876 566889999999973222333788999999999999999999999999999999976543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.013 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 740 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~ 740 (1082)
++++++|.++...|++++|+..|+.+++.||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788888888888888888888888888654
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.89 E-value=5.6 Score=47.47 Aligned_cols=409 Identities=12% Similarity=0.016 Sum_probs=198.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---HcCCHHHHH
Q 001414 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKAR 217 (1082)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~---~~g~~~~A~ 217 (1082)
.|.-++=+..++.-+..++.+...+..+..++...|++.+-...-..+..+.|.+ +.+|.....-.. ..+....+.
T Consensus 92 ~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 92 EGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred cccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcchhHHH
Confidence 3445555666666666777777777777777888888777766666666677776 555554433322 235566667
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001414 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1082)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 297 (1082)
..|++++. +-+++..|...+......++. +...++++....+|.+++..
T Consensus 171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~~------------------------------~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 171 ELFEKALG-DYNSVPIWEEVVNYLVGFGNV------------------------------AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHhcccc------------------------------ccccccchhhhHHHHHHHhh
Confidence 77777763 445666666666655554430 11223333444444444432
Q ss_pred cCCCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCCh----hhHHHHH---HHHHHcCCHHHHHHH--
Q 001414 298 TNHGP----TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI----FPYYGLG---QVQLKLGDFRSALTN-- 364 (1082)
Q Consensus 298 ~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~la---~~~~~~g~~~~A~~~-- 364 (1082)
....- .....+..+-..|...-..++-+.++...+.. |... ..+.... .......+++.|...
T Consensus 220 ~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~ 295 (881)
T KOG0128|consen 220 LGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLA 295 (881)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHH
Confidence 11111 11122333333333333345555555555531 1110 0111111 111123344444443
Q ss_pred -----HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHhhcC
Q 001414 365 -----FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTKAG 437 (1082)
Q Consensus 365 -----~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~--~~~~~~~Al~~l~~~~~ 437 (1082)
+++.++..|.....|..+.......|....-...+++++.-.+.+...|+..+..+ ..+-.+.+...+.+...
T Consensus 296 ~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 296 KILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhc
Confidence 33333444444556666666677778888888888888888888888888887766 44444444444443222
Q ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCC
Q 001414 438 EEVPIEVLNNIGVIHFEKGE--FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 515 (1082)
Q Consensus 438 ~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (1082)
.++....+...+.+.+..++ ...-...+.+++..... +......++. .. .+
T Consensus 376 ~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-------------------l~~~~~~~rr---~~-----~~ 428 (881)
T KOG0128|consen 376 SCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-------------------LHNDYLAYRR---RC-----TN 428 (881)
T ss_pred CCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-------------------HHHHHHHHHH---hh-----cc
Confidence 22222222222222222221 12222333333321000 0000000000 00 00
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCChHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHcCCChH-HHHH
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDYVDAYLRLAAIA-KARNNLQLSIELVNEALKVNGKYPN-ALSM 592 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~a~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~-~~~~ 592 (1082)
-.....+-.+ ...+..|...|...... --.....+-..|.+. ...++.+.+..+.+..+.....+.. .|..
T Consensus 429 ~~~s~~~s~l------r~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle 502 (881)
T KOG0128|consen 429 IIDSQDYSSL------RAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLE 502 (881)
T ss_pred cchhhhHHHH------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHH
Confidence 0000000000 11223333333333322 111133334444443 4456778888887777665555444 6777
Q ss_pred hhhhhhcccchHHHHHHHHHhhhcCC
Q 001414 593 LGDLELKNDDWVKAKETFRAASDATD 618 (1082)
Q Consensus 593 lg~~~~~~g~~~~A~~~~~~al~~~~ 618 (1082)
...+-...|+...+..++++++....
T Consensus 503 ~~~lE~~~g~~~~~R~~~R~ay~~~~ 528 (881)
T KOG0128|consen 503 AINLEREYGDGPSARKVLRKAYSQVV 528 (881)
T ss_pred HHhHHHHhCCchhHHHHHHHHHhcCc
Confidence 77777777888888888888776443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.88 Score=46.33 Aligned_cols=48 Identities=33% Similarity=0.498 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001414 143 EVEQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
..++|+..|.+++.+.|.- ..++-.+..+.++.|+|.+-...|.+++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4555555566555555432 33455555566666666666666655543
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.2 Score=50.68 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHHH------------hCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc----------------
Q 001414 532 IHDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 583 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~------------~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~---------------- 583 (1082)
.+.|.+|...|.-+.. .+|-.++.++.++.+...+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3455666666665544 346668999999999999999999888887776432
Q ss_pred -----CCChH---HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHH
Q 001414 584 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 655 (1082)
Q Consensus 584 -----p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 655 (1082)
|.+.. +++..-..+.+.|-|..|.++.+-++++.|..|+++...+.++ |.... .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2233344456678899999999999999999999998888887 44331 6677777
Q ss_pred HHHHHH-----HhhcCCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhc
Q 001414 656 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 700 (1082)
Q Consensus 656 ~~~~~~-----l~~~p~~~~a~~~la~~~~~~~~---~~~A~~~~~~~~~~~p 700 (1082)
.+++.. +..-|+-.+.. .+|..|..... -..|...+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYSL-ALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 777655 45557665555 66777776654 5788999999998876
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.2 Score=58.08 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001414 880 AEEARRKAEEQKKYL 894 (1082)
Q Consensus 880 ~~~~~~~~~~~~~~~ 894 (1082)
++|.++++++++..+
T Consensus 245 eEEer~~ee~E~~~e 259 (1064)
T KOG1144|consen 245 EEEERRREEEEAQEE 259 (1064)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.7 Score=44.64 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=101.9
Q ss_pred HHHHHHHHhccHHhHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCCCchH-
Q 001414 236 ALAVMDLQANEAAGIRKGMEKMQRAFE----IY--PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN--HGPTKSH- 306 (1082)
Q Consensus 236 ~la~~~~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~- 306 (1082)
.+..+|...++ |.+|+......+. ++ +.-..++..-...|+...+..+|...+..+....+ ..|....
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45566666666 7777776655543 22 22334555566777777888877777666653322 1222222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCcHHHHH
Q 001414 307 -SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETLK 380 (1082)
Q Consensus 307 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~ 380 (1082)
.-..-|..+....+|..|..||-.+.+.+..-...+.+ +-.+..+-+..+..++--..+ ..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 23334666777788999999998888755433333333 333344445556665544433 445555566777888
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 001414 381 ALGHIYVQL--GQIEKAQELLRKAAKIDPR 408 (1082)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~l~kal~~~p~ 408 (1082)
..+.++.+. .+|..|+..|..-+..+|-
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 888777654 4677888888777766553
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.76 Score=52.04 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHh------------cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 001414 108 EHFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------ 157 (1082)
Q Consensus 108 ~~~~~A~~~~~~al~------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------ 157 (1082)
.-|.+|...|.-+.. ..|.+...++.++.++..+|+.+-|..+..++|-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 345566666665543 35778889999999999999988887777766521
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHH-----Hh
Q 001414 158 ---DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQ 225 (1082)
Q Consensus 158 ---~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~ 225 (1082)
.|.|- .+++..-..+.+.|-+.-|+++++-+++++|. +|..+.+.+-....+..+|.=-+..++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 23332 23344445566789999999999999999998 66666666666667777887777777665 23
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCC
Q 001414 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1082)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1082)
.-|+ ...-..+|.+++.......-..|...+.+|+...|.
T Consensus 412 ~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3343 334456677777766655567888889999988874
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.018 Score=39.19 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 199 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
+++.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666655
|
... |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=3.8 Score=43.61 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=111.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCCChhh--
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFP-- 344 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~-- 344 (1082)
..++.+|+..++|.+|+.+...++. ..+..+...+.+..-..+|+...+..+|...+..+-...+. .|....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 4678899999999999998887764 33444555677777888899999999999888877643211 1111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHH
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQIEKAQELL--RKAAKIDPRDAQAFIDL 416 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l--~kal~~~p~~~~~~~~l 416 (1082)
-+.-|..+....+|..|..+|-.+++-+. .-..++..+-.|-...+..++...++ +.+++....+..+...+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 12235566667899999999998887532 12234455555556667777655544 45566667788888888
Q ss_pred HHHH---hcCCHHHHHHHHHh
Q 001414 417 GELL---ISSDTGAALDAFKT 434 (1082)
Q Consensus 417 a~~~---~~~~~~~Al~~l~~ 434 (1082)
+..+ ...++..|+.-|..
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHH
Confidence 8888 45678888888877
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.61 E-value=7.2 Score=46.65 Aligned_cols=250 Identities=12% Similarity=0.062 Sum_probs=140.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q 001414 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1082)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1082)
..+++....|.-|+.+...-- .........+...|..++..|++++|...|-+.+... .|..+ ..-+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~V------i~kfLd 409 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEV------IKKFLD 409 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHH------HHHhcC
Confidence 345566666777776655421 1112334667788999999999999999999988532 12221 223344
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001414 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1082)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~~l~~ 434 (1082)
.....+-..+++.+.+..-.+.+=-..|-.+|.++++.++-.++..+.- ...-..+.-..+-.++..+-.++|.-+..+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4555666677777777655566666778889999999877665554332 000000111111112244444555544444
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCC
Q 001414 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 514 (1082)
Q Consensus 435 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (1082)
... .. ..+-.++...|+|++|+.++... .
T Consensus 489 ~~~---he---~vl~ille~~~ny~eAl~yi~sl---------------------------------------------p 517 (933)
T KOG2114|consen 489 FKK---HE---WVLDILLEDLHNYEEALRYISSL---------------------------------------------P 517 (933)
T ss_pred hcc---CH---HHHHHHHHHhcCHHHHHHHHhcC---------------------------------------------C
Confidence 222 11 22344566789999999998753 1
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCh-HH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY-VD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~-~~----a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
.+.........|..+.. ..+++-..++-+.+.. ++.. .. ....+-.+..-.+++..-..++....++.|+.++
T Consensus 518 ~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 518 ISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred HHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 12234455666777665 4455555555554432 2111 00 0012223445566777777777777777777665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.18 Score=47.88 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~ 208 (1082)
..++....+-+..++.+.+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3455666677777788888888888777888888888888888888888888888888877777776 666777888887
Q ss_pred HcCCHH
Q 001414 209 KLGQLG 214 (1082)
Q Consensus 209 ~~g~~~ 214 (1082)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 777654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.49 E-value=3.7 Score=42.46 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--CCCCChhhHH
Q 001414 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYY 346 (1082)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~ 346 (1082)
..++.+++..|.|..|+.+...++. ..+..+.....+..-..+|+...+..++...+..+-...+ -.|....+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567888999999999988887763 3445566667788888889999888888888777654221 1222222222
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHH---HHHHHHHcCCHHHHHHHHH--HHHH-hCCCCHHHHHH
Q 001414 347 --GLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKA---LGHIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFID 415 (1082)
Q Consensus 347 --~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~---la~~~~~~g~~~~A~~~l~--kal~-~~p~~~~~~~~ 415 (1082)
.-|..++...+|..|..+|-.+++-+. .+..+... +-..-...+..++....++ ..++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 235556677789999999988887542 23333222 2222223344454444432 2222 33455677777
Q ss_pred HHHHH---hcCCHHHHHHHHHh
Q 001414 416 LGELL---ISSDTGAALDAFKT 434 (1082)
Q Consensus 416 la~~~---~~~~~~~Al~~l~~ 434 (1082)
.+..+ ...++..|+..|..
T Consensus 289 vaea~~NRsL~df~~aL~qY~~ 310 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSD 310 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhH
Confidence 77777 44577788877776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.56 Score=44.58 Aligned_cols=137 Identities=12% Similarity=0.074 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHH
Q 001414 649 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 726 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 726 (1082)
+..++|+..|..+-+.+-. -..+....|.+..+.|+...|+..|..+-.-.|-.. +-.-.+.+.-+.++...|-|+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~-~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ-IGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHHHhccccHHH
Confidence 6778888888777666544 344566778999999999999999999887664110 0112244556788889999988
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 001414 727 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 788 (1082)
Q Consensus 727 Ai~~~~~al~~~~~~~~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~ 788 (1082)
-....+..-.. .+|--..+.-.||.+-++.|++..|+++|..+.. +.+.|.-..+-+.++
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 76666554322 2333377778899999999999999999998887 334444444445443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.5 Score=44.79 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=118.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 001414 355 LGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALD 430 (1082)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~~~~~~~~Al~ 430 (1082)
...+++|+..|++++++.|... .++..+..+++++|++++-...|.+++..-.. + ...+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS--------A--VTrN------- 102 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS--------A--VTRN------- 102 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--------H--Hhcc-------
Confidence 3478888888998888876643 46777888888999998888888877642100 0 0000
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCC
Q 001414 431 AFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 510 (1082)
Q Consensus 431 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (1082)
......+.+...-....+.+--..+|+..+..- ....
T Consensus 103 ---------ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~AL---------------------------------kdAK- 139 (440)
T KOG1464|consen 103 ---------YSEKSINSILDYISTSKNMDLLQEFYETTLDAL---------------------------------KDAK- 139 (440)
T ss_pred ---------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---------------------------------Hhhh-
Confidence 000111111111112222222223333322200 0000
Q ss_pred CcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC------------ChHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001414 511 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------------DYVDAYLRLAAIAKARNNLQLSIELVNE 578 (1082)
Q Consensus 511 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------------~~~~a~~~la~~~~~~g~~~eA~~~~~~ 578 (1082)
.......+-..+|.+|...+.+.+-..++++.-..+. .....|..-..+|..+.+...-..+|++
T Consensus 140 ---NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeq 216 (440)
T KOG1464|consen 140 ---NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQ 216 (440)
T ss_pred ---cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHH
Confidence 0001112233578888888888877777777654332 1245566667778888888888888999
Q ss_pred HHHHcCC--ChH----HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001414 579 ALKVNGK--YPN----ALSMLGDLELKNDDWVKAKETFRAASDATDG 619 (1082)
Q Consensus 579 al~~~p~--~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 619 (1082)
++.+... +|. +.-.=|..+++.|+|++|-.-|-.+++.++.
T Consensus 217 alhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 217 ALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 9887633 233 3334466788899999999999888886543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=3.4 Score=46.96 Aligned_cols=251 Identities=16% Similarity=0.111 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1082)
....+.+.......|+++......+..+...|+.+.|+..+...+. ..........++.+|.++.-+.+|..|..++..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555566667778888888888888888888887777777776664 111122345677788888888899999999888
Q ss_pred HHHhhCCCCCChhh-HHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001414 331 SVKEINKPHEFIFP-YYGLG-QVQLK--------LGDFRSALTNFEKV---LEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 331 al~~~~~~~~~~~~-~~~la-~~~~~--------~g~~~~A~~~~~~~---l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
..+. .+...+ |..++ .|++. .|+-+.|-.+++.. +...|.+..+-.. -..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHH
Confidence 8752 222222 22233 33322 22333333333322 2222222111000 0111111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHH---HHHHhhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAAL---DAFKTKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKD 467 (1082)
Q Consensus 398 ~l~kal~~~p~~~~--~~~~la~~~---~~~~~~~Al---~~l~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 467 (1082)
+-.+.- +++..+. .++.++.++ ......+.. ..+........+. -.+..+|.++..+|+...|..+|..
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i 474 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKI 474 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111110 1112222 234444444 222222222 2222211112222 3455679999999999999999998
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 001414 468 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVLYRLIL 546 (1082)
Q Consensus 468 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l 546 (1082)
.++.... ........|.++|.+|.++...|. ..++..++.++-
T Consensus 475 ~~~~e~~------------------------------------~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 475 QVEKESK------------------------------------RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred HHHHHHh------------------------------------hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 8763100 000223457899999999999988 899999999987
Q ss_pred HhCCCh
Q 001414 547 FKYQDY 552 (1082)
Q Consensus 547 ~~~p~~ 552 (1082)
....++
T Consensus 519 ~~~~dY 524 (546)
T KOG3783|consen 519 EYASDY 524 (546)
T ss_pred hhcccc
Confidence 766554
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2 Score=44.27 Aligned_cols=215 Identities=14% Similarity=0.088 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001414 309 YNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1082)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1082)
..+++-....+++++|+..|.+.+...... ...-.+...++.+|...|++..--......- ++|....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 567777777788888888888877521100 1112345667777777777655433332221 1111110
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 001414 384 HIYVQLGQIEKAQELLRKAAKIDPR---DAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFES 460 (1082)
Q Consensus 384 ~~~~~~g~~~~A~~~l~kal~~~p~---~~~~~~~la~~~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 460 (1082)
..+...+.+..++..|. +..-.+.+...+ +++..+....-....+-..+..++++.|.|.+
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~--------iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTAL--------IEWADREKRKFLRLELECKLIYLLYKTGKYSD 143 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 01122233333333332 222222221111 11111100001112445567788899999999
Q ss_pred HHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHH
Q 001414 461 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 540 (1082)
Q Consensus 461 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 540 (1082)
|+......+..-. .....+...+++..-..+|....+..++..
T Consensus 144 alalIn~ll~ElK-------------------------------------k~DDK~~Li~vhllESKvyh~irnv~Kska 186 (421)
T COG5159 144 ALALINPLLHELK-------------------------------------KYDDKINLITVHLLESKVYHEIRNVSKSKA 186 (421)
T ss_pred HHHHHHHHHHHHH-------------------------------------hhcCccceeehhhhhHHHHHHHHhhhhhhh
Confidence 9988876654210 011344556677777778887777777776
Q ss_pred HHHHHHH-----hCCChHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001414 541 LYRLILF-----KYQDYVDAY--LRLAAIAKARNNLQLSIELVNEALKVN 583 (1082)
Q Consensus 541 ~~~~~l~-----~~p~~~~a~--~~la~~~~~~g~~~eA~~~~~~al~~~ 583 (1082)
.+..+-. -+|....+- +.-|...+...+|..|..+|-++++-.
T Consensus 187 SLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 187 SLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 6665533 234333322 223445667778888888888887744
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.2 Score=51.21 Aligned_cols=95 Identities=11% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCchHHHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhhcCCCC----HHHHHH
Q 001414 683 GQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC-------LRKFYYNTD----AQILLY 749 (1082)
Q Consensus 683 ~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~a-------l~~~~~~~~----~~~~~~ 749 (1082)
..+++|+..|.-++-..- +......+.++..+||+|-.+|+.+....++++| +.....|.. ..+++.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 455666666655554320 0111134667888899999988855544444444 443222222 678889
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCC
Q 001414 750 LARTHYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 750 La~~~~~~g~~~eA~~~l~~al~~~p~~ 777 (1082)
+|.++++.|++++|+++|.+++...-.+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999865443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.1 Score=39.46 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhh
Q 001414 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 745 ~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
+.+++||.++++.|+|.+|+.+...++++.|+|..+.-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 46789999999999999999999999999999976554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.37 Score=45.90 Aligned_cols=85 Identities=16% Similarity=0.021 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001414 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (1082)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (1082)
..+..+.++-+..+... ++..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|..+.
T Consensus 11 ~gLie~~~~al~~~~~~-----------D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPD-----------DAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHccCChH-----------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 34444555555555444 8888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChH
Q 001414 164 ALLGQACVEFNRGRYS 179 (1082)
Q Consensus 164 a~~~la~~~~~~g~~~ 179 (1082)
+--.++.|++..|+..
T Consensus 80 ~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 80 AKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHHHcCChH
Confidence 9999999999988754
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.37 Score=42.49 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1082)
|.-++..|++-+|+++.+..+...+++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCC
Confidence 344455555555555555555554444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.15 Score=38.66 Aligned_cols=41 Identities=22% Similarity=0.046 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1082)
.++.+|..+++.|+|.+|..+++.+++..|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777788888888888888888888877766655443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.35 Score=41.69 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCC
Q 001414 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1082)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~lg~~~~~~g~ 212 (1082)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+++. ....+..+-.++-.+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555666666666666666666666666666666666666665544 23344444444444444
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.35 Score=56.16 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001414 842 HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEA 883 (1082)
Q Consensus 842 ~~~~~~~ll~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 883 (1082)
+.+..+.+|.+-+..-+++++.+++...+.++.++.++++|+
T Consensus 215 gv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 215 GVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEA 256 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444444444444444455544444333
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=52.12 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1082)
|+|+.++|..+|..++.+.|.++.++...|.+.-..++.-+|..+|-+++..+|.|..++..++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44555566666666666666666666666666666666666666666666666666666655544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.35 Score=51.19 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~ 420 (1082)
..++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4557788999999999999999999999999999999999999999999999999999999999998776655543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.36 Score=51.10 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1082)
.|+.+.+.++.++|+++.-+--+|.+|.+.|.+..|..-++..+...|+.+.+-....
T Consensus 199 ~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 199 LALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 5666666666666666655555666666666666666666666666665555544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.081 Score=36.57 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
++..||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996654
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.79 E-value=8.3 Score=45.10 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 001414 747 LLYLARTHYEAEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 747 ~~~La~~~~~~g~~~eA~~~l~~al~~~ 774 (1082)
+...++.|....++..-+..+.++..+-
T Consensus 819 ~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 819 AQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 3445566666666655555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=5.9 Score=37.98 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=59.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHH
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYK 209 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~lg~~~~~ 209 (1082)
+.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+-..|+..|..+-.-.|.. ....++.-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 334444555566666665555444333 2344555555666666666666666554443322 12234445555555
Q ss_pred cCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHH
Q 001414 210 LGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1082)
.|-|+.-..-.+-.- ..+|-...+.-.||...++.|+ +..|...|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 555555444333221 1223333444445555555554 5555555544433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.97 Score=41.22 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001414 161 NVPALLGQACVEFNRGR---YSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~---~~~Al~~~~~al~-~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1082)
.....+.+|.++....+ ..+.+.+++..++ -.|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35667777777776644 5677888888886 5566656677888888889999999999999998888888877654
Q ss_pred HHHH
Q 001414 237 LAVM 240 (1082)
Q Consensus 237 la~~ 240 (1082)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.57 Score=40.37 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 001414 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGR 177 (1082)
Q Consensus 113 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~ 177 (1082)
.+..+.+.+..+|.+..+.+.+|..++..|+++.|+..+-.++..+|+. -.+...+-.++-..|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667888899999999999999999999999999999999999988765 3344444444444444
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.29 E-value=2.7 Score=37.35 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=49.8
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcC---CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRID---MH---------EPSTWVGKGQLLLAKGEVEQASSAFKIVLE 156 (1082)
Q Consensus 89 la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~---p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 156 (1082)
.+..|+.++.-+ +...++.|.+|...+.++.... |. ++..+..++..+...|+|++++...+.+|.
T Consensus 6 Va~aY~aLs~ae--~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 6 VAMAYMALSDAE--RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHH--HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 455566665544 3355677888888888776543 21 123444556666667777666665555543
Q ss_pred h-------CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001414 157 A-------DRDN----VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1082)
Q Consensus 157 ~-------~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1082)
. +.+. +.+.+.+|..+-..|+.++|+..|+.+
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2 1111 223344444444455555555555443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.21 E-value=11 Score=39.86 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=111.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001414 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1082)
Q Consensus 201 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1082)
+.+-...|+..+...-+..-..+++++|.+..+++.|+.-.... +.+|...|+++++....... -......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~yr----~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIYR----QSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHHh----hHHHHhh
Confidence 44556667777788888888899999999999999988655444 67788888888765422111 1111111
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHH
Q 001414 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1082)
Q Consensus 281 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1082)
.|...+|.. . .........-..++.|..++|+..+|++.+....+.++. ......+-+|...+....-|..
T Consensus 259 ~~~~~da~~------r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL------R--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh------h--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 0 001111234456888999999999999999988874321 1111233445555555544444
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHH-------------HcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001414 361 ALTNFEKVLEI-YPDNCETLKALGHIYV-------------QLGQ---IEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~-------------~~g~---~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
....+-+.-.+ -|......+.-+.+-. +.|- --.|++.+.++++.+|.-+..++.+-.
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 43333333222 1333333332222211 1121 235778888888899988877666544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=26 Score=42.66 Aligned_cols=213 Identities=10% Similarity=-0.044 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HH
Q 001414 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE-LL 420 (1082)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~-~~ 420 (1082)
..++..-....+.+.|...+.+.....+-+. .++..+|.-....+...+|...+..+.....++ ..+..... .+
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al 323 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHH
Confidence 3444455567778888888887655443322 234444444444333567777777654332222 22222222 23
Q ss_pred hcCCHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHhhhhh
Q 001414 421 ISSDTGAALDAFKTK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 499 (1082)
Q Consensus 421 ~~~~~~~Al~~l~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1082)
..+++......+... ..........+-+|..+...|+.++|..+|.++.........+ ....+... .
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~L-----------Aa~~Lg~~-~ 391 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMV-----------AAQRLGEE-Y 391 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHH-----------HHHHcCCC-C
Confidence 778888777777762 2223466778888999888999999999999975421100000 00000000 0
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001414 500 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 577 (1082)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 577 (1082)
. +....................+..+...|....|...+..++.. .+......++.+....|.++.++....
T Consensus 392 ~----~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 392 P----LKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred C----CCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0 00000000000000112344556666777777777777766654 224555666677777777777666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=19 Score=41.79 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 001414 519 VTVLFNLARLLEQIHDTVAASVLYRL 544 (1082)
Q Consensus 519 ~~~~~~la~~~~~~g~~~~A~~~~~~ 544 (1082)
..+++-.|+.+....++++|.+.|.+
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 34555555555555555555554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.8 Score=39.26 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~ 210 (1082)
++......+..++++++..++..+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 34444555557788888888887777788888888888888888888888888888877766665 55666777888777
Q ss_pred CCHH
Q 001414 211 GQLG 214 (1082)
Q Consensus 211 g~~~ 214 (1082)
|+..
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.6 Score=46.29 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1082)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1082)
.++..+|.+|...|+++.|.+.|.++...........+.++.+.++.+..+++.....++.++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555566666666665555555544333333445555556666666666666666555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.35 Score=50.02 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=45.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
|.-....|+.++|..+|..++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.+..++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 334455666666666776666666666 566666666666666666677777777777777666666554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.2 Score=41.75 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1082)
++..++.-+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+..
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 78888887778889999999999999999999999999999999888888888889999999888753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=22 Score=40.74 Aligned_cols=235 Identities=14% Similarity=0.008 Sum_probs=134.5
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHH
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 589 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 589 (1082)
..|..+...+..+..+...|+.+.|+..+...+. +.. .-+++-+|.++.-..++..|...+..+...+.-+.-.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 4456677777778888888887777777777666 222 3466777888888888888888888877776544444
Q ss_pred HHHhh-hhhhcc--------cchHHHHHHHHHhhh---cCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHH
Q 001414 590 LSMLG-DLELKN--------DDWVKAKETFRAASD---ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 657 (1082)
Q Consensus 590 ~~~lg-~~~~~~--------g~~~~A~~~~~~al~---~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 657 (1082)
|..++ -+++.. |+-+.|..+++.... ..+++.+ .++.-..+|.++
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P-----------------------~E~f~~RKverf 396 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLP-----------------------LEKFIVRKVERF 396 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCc-----------------------hhHHHHHHHHHH
Confidence 44443 333322 233333333332221 1111111 111222233332
Q ss_pred HHHHHhhcCCCHHH--HHHHHHHHHhc--CCchHHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001414 658 YTRVIVQHTSNLYA--ANGAGVVLAEK--GQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQ 732 (1082)
Q Consensus 658 ~~~~l~~~p~~~~a--~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~Ai~~~~ 732 (1082)
-.+.- .+|..+.+ +..++.++..- .-.++.. -++...+ .|....+ +..-.++.+|.++..+|+...|...|.
T Consensus 397 ~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 397 VKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred hcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22221 22222222 23333333221 1122222 1122222 2332111 223356778999999999999999999
Q ss_pred HHHHhhcC-CCC----HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCC
Q 001414 733 NCLRKFYY-NTD----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 733 ~al~~~~~-~~~----~~~~~~La~~~~~~g~-~~eA~~~l~~al~~~p~ 776 (1082)
.++++... ..+ |.++|-||-.|...|. ..+|..++.+|...+.+
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 99965322 222 8899999999999988 99999999999987743
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.4 Score=36.76 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=66.4
Q ss_pred HHHhcCCchHHHHHHHHHHHHh---cCCCCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----CCC---
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAA---SGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD--- 743 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~----~~~--- 743 (1082)
-....|-|.+|...++++.+.. |...-.+ +..++-.|+..+..+|+|++++..-..+|.-|.. ..+
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 3345577888888888887765 2111111 3456677888899999999999999999976632 233
Q ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 744 --AQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 744 --~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
..+.+..+.++...|+.++|++.|+.+-++
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445567788888999999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.18 Score=33.01 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 710 VWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
+++++|.++..+|+++.|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555555555555555555555555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.5 Score=51.15 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 001414 865 QQNRQRQEAARQAA 878 (1082)
Q Consensus 865 ~~~~~~~~~~~~~~ 878 (1082)
+.+|+++|.+|+..
T Consensus 357 kkererqEqErk~q 370 (1118)
T KOG1029|consen 357 KKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=8.2 Score=44.51 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1082)
+.+..++..+.....+.-|.+.|.++-. .-.+.+++...+++.+|...-++.-+. -+.+++-.|..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqw 813 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQW 813 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHH
Confidence 4455555555566666666666665532 223456677777888877766553222 23466667777
Q ss_pred HHHcCCHHHHHHHHHHH
Q 001414 386 YVQLGQIEKAQELLRKA 402 (1082)
Q Consensus 386 ~~~~g~~~~A~~~l~ka 402 (1082)
+....++++|.+.|-++
T Consensus 814 LAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhhhHHHHHHHHHHh
Confidence 77777777777776655
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.5 Score=43.59 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCH----H
Q 001414 670 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA----Q 745 (1082)
Q Consensus 670 ~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~----~ 745 (1082)
.++..+|..|...|+++.|++.|.++++...+. ....++++++..+.+..|++.....+..++-.....+.+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 467789999999999999999999999876321 1356788999999999999999999999998775454543 3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776 (1082)
Q Consensus 746 ~~~~La~~~~~~g~~~eA~~~l~~al~~~p~ 776 (1082)
+-.+-|..+...++|..|-+.|..+..-...
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 3445677788889999999999887765543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.22 Score=32.64 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1082)
+++.+|.++...|+++.|...|..+++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555556666666666666666655555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.37 E-value=14 Score=39.19 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc---CCCCHHHHHH
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY---YNTDAQILLY 749 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~---~~~~~~~~~~ 749 (1082)
..++.+-.+.|+..+|++.|+.+..-.|- ...-.++.||...++...-|.... .++.+|. .|..+.+-|.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl---~t~lniheNLiEalLE~QAYADvq----avLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPL---LTMLNIHENLLEALLELQAYADVQ----AVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccccCcchHHHHHH
Confidence 34566666667777777777666655541 123345555655555544443332 2233321 2333333332
Q ss_pred HHHHH-------------HHhcc---HHHHHHHHHHHHhhCCCCcchhh
Q 001414 750 LARTH-------------YEAEQ---WQDCKKSLLRAIHLAPSNYTLRF 782 (1082)
Q Consensus 750 La~~~-------------~~~g~---~~eA~~~l~~al~~~p~~~~~~~ 782 (1082)
-+..- .+.|- -..|++...+|++.+|.-|....
T Consensus 352 aALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 352 AALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHH
Confidence 22111 11221 23588889999999998765443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.4 Score=45.06 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=78.3
Q ss_pred HHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHhcCCC--
Q 001414 49 EYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH-- 126 (1082)
Q Consensus 49 ~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~-- 126 (1082)
.|..-..+++|+..+.-|+-... .........+.++..+||+|-.+|+.+ .-...+..|+..|.++......
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~----~E~~fl~~Al~~y~~a~~~e~~~~ 159 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEE----NEKRFLRKALEFYEEAYENEDFPI 159 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHHHHHHhCcCCC
Confidence 45556677888887776643211 011122355677888999999888755 3356788999999999866532
Q ss_pred ----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 001414 127 ----EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQAC 170 (1082)
Q Consensus 127 ----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~ 170 (1082)
.....+.+|.+..+.|++++|..+|.+++.....+ ...+..+|.
T Consensus 160 ~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 160 EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 24567778999999999999999999988754332 234555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=37 Score=41.40 Aligned_cols=316 Identities=9% Similarity=-0.003 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001414 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1082)
..++.-|...++.|++..+..+......... ...+-+..+..+-.. .. ..-+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL--------------~~yl~y~~L~~~l~~-------~~----~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPL--------------YPYLEYRQLTQDLMN-------QP----AVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCc--------------HhHHHHHHHHhcccc-------CC----HHHHHHH
Confidence 4678889999999999999888887532211 111222222111111 01 1133344
Q ss_pred HhcCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001414 121 SRIDMHEPSTWVGKGQLL---LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1082)
Q Consensus 121 l~~~p~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1082)
+..+|+.|.....+...+ ...+++..-+.++ ...|.+.......+..+...|+-.+|.....++....... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 556677776655554433 2345555544422 2347777777777778888999888877777765544332 2
Q ss_pred HHHHHHHHHHH------------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHhHHHHHHHHH
Q 001414 198 AIRLGIGLCRY------------------KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQ 258 (1082)
Q Consensus 198 ~~~~~lg~~~~------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~A~~~~~ 258 (1082)
...-.+-..+. ..|+...|......+ |..... ++...... .+ ......
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~---p~~~~~--- 230 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQND---PNTVET--- 230 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHC---HHHHHH---
Confidence 22222223333 333333333332221 111111 01000000 00 111111
Q ss_pred HHHHhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001414 259 RAFEIY-PYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (1082)
Q Consensus 259 ~al~~~-p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 335 (1082)
.+... |.. ......++..-....+.+.|..++..........+ ....++..+|......+...+|..++..+...
T Consensus 231 -~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~- 308 (644)
T PRK11619 231 -FARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR- 308 (644)
T ss_pred -HhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-
Confidence 11111 111 11122333334455666777777776543322221 11233444444444443356677777665431
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 336 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
.......-....+.+..++++.+...+..+-..........+.+|..+...|+.++|..+|.++..
T Consensus 309 ---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 309 ---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 112222233334555778888777777775444445667888888888888888888888888743
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.77 E-value=13 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 710 VWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
.-+-+-.+++.-|+|. -|.++++.
T Consensus 748 fkFGlTKVFFr~GKFa----EFDqiMks 771 (1259)
T KOG0163|consen 748 FKFGLTKVFFRPGKFA----EFDQIMKS 771 (1259)
T ss_pred ccccceeEeecCcchH----HHHHHHhc
Confidence 3344556677777774 46666664
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.7 Score=48.17 Aligned_cols=128 Identities=23% Similarity=0.172 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H
Q 001414 112 LATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-A 188 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-a 188 (1082)
-++..+...+.++|.++..++.. ...+...+....+...+...+..+|.++.+...++..+...|..-.++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666677888888775554 67777778888999999999999999999999999988888777776666555 7
Q ss_pred HHhCCCChHHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001414 189 LQVHPSCPGAIR------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 189 l~~~p~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
....|.+ ..+. +.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7778887 3332 2357788888889999999999999999886665554444
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.49 E-value=30 Score=39.56 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHhcCCChh--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001414 23 PRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTYL 96 (1082)
Q Consensus 23 ~~~~~~l~~~l~~e~~~~~--~~~~~a~~y~~~g~~~~A~~~le~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~~~ 96 (1082)
.+|...+..+......+.. +-+.+...||..|.|++|+..--++-.. ..+.||..-.+..+.++.....-...-
T Consensus 40 sddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~ 119 (926)
T COG5116 40 SDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIG 119 (926)
T ss_pred hchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhC
Confidence 3344444444444555555 6678899999999999999987666432 222233333344555544443333333
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q 001414 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFN 174 (1082)
Q Consensus 97 g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~ 174 (1082)
|+.+.- +.. -...++.....+-.....-+.+|.... |. -+..++.+++-..+. ...++.++.....
T Consensus 120 ~~~d~i----D~~---l~~v~e~i~~kc~~~se~~~~lgIa~e--g~---rldiie~~l~~~~d~di~~ylL~Lait~v~ 187 (926)
T COG5116 120 GDKDII----DRI---LDFVLEVIGAKCVDDSEIGYLLGIAAE--GL---RLDIIEKYLSDGNDCDIINYLLDLAITLVE 187 (926)
T ss_pred CCcccc----hHH---HHHHHHHHHHHHhhHHHHHHHHHHHHH--HH---HHHHHHHHHhCCCcccHHHHHHHHHHHHhh
Confidence 332110 111 111222222222222233333333322 11 123444445433222 3455666665555
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001414 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1082)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 228 (1082)
...+.. +++...+...|+.+..-++.++.|+..+++-..|...+++..+.+.
T Consensus 188 ~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 188 EEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 444433 4566667777766444578889999999999999999999887654
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.47 E-value=26 Score=39.14 Aligned_cols=191 Identities=15% Similarity=-0.001 Sum_probs=122.2
Q ss_pred ChHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhc
Q 001414 586 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 665 (1082)
Q Consensus 586 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 665 (1082)
+.+....-|..-+-.|+..++.+.+..+....-+.....++.|.....+.. .+..+|+.+|+.+--.-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 344444555555667888888888876655433334444444443323333 67889999999988888
Q ss_pred CCCHH--HHHHH-HHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 001414 666 TSNLY--AANGA-GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 742 (1082)
Q Consensus 666 p~~~~--a~~~l-a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~ 742 (1082)
|.... +.... ..+....|+.+++..+-.+.+.....|.|..+..-.+..+.+ ..++-. -...+..++..+....
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~--~~~d~~-~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVV--RLDDEI-RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH--hccccc-cHHHHHHHHHhcCchh
Confidence 87432 33333 344467899999999999998888766655444333333333 333111 2234677777654444
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHH
Q 001414 743 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 792 (1082)
Q Consensus 743 ~~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~nla~~~~~~~ 792 (1082)
-..+|..+++.-.-.|+.+-|.-.-.+++.+... ...-.-.+..|+..+
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa 304 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAA 304 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHH
Confidence 4788999999999999999999999999999743 444444555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.83 Score=34.28 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001414 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~La~~~~ 755 (1082)
+..+|..+-+.|.+.|++++|.++|+.+.+. +-.++..++..+-.+++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 3567888888888888999999998888876 56777777777766554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.27 E-value=14 Score=36.95 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=53.5
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhccH
Q 001414 683 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY--NTDAQILLYLARTHYEAEQW 760 (1082)
Q Consensus 683 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~--~~~~~~~~~La~~~~~~g~~ 760 (1082)
-.-..|...|-++-.. | ..+++...+.||..|. ..+..+|+.+|-++++.+.. ..+++++..|+.++++.|++
T Consensus 120 ~~d~~A~~~fL~~E~~-~---~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 120 FGDQEALRRFLQLEGT-P---ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred cCcHHHHHHHHHHcCC-C---CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3445666666554332 2 1356788888887777 46788888888888887543 23488888888888888888
Q ss_pred HHHH
Q 001414 761 QDCK 764 (1082)
Q Consensus 761 ~eA~ 764 (1082)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.54 Score=48.90 Aligned_cols=89 Identities=10% Similarity=0.163 Sum_probs=69.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001414 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
|.++....|+++..|...+......|-|.+--.+|.++++.+|.+ .++|.. .+.-+...++++.++..|.+++..+|+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 444455567888888888887778888888888888889888888 566655 556677788889999999999999998
Q ss_pred CHHHHHHHHHH
Q 001414 230 NVEALVALAVM 240 (1082)
Q Consensus 230 ~~~a~~~la~~ 240 (1082)
++..|...-.+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 88887765543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.50 E-value=9.4 Score=43.98 Aligned_cols=131 Identities=17% Similarity=0.051 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 145 EQASSAFKIVLEADRDNVPALLGQ--ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~l--a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 222 (1082)
.-++..+..-+..+|.++..++.. ...+...+....+.-.+..++..+|.. ...+..++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 335666666667788887765443 666677888888999999999999998 66788888888888877777766665
Q ss_pred -HHhhCCCCHHHHHHH------HHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001414 223 -ALQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1082)
Q Consensus 223 -al~~~p~~~~a~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1082)
+....|.+......+ +.+....+. ..++...+.++....|.++.+...+.....
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 888889888776555 666666666 777778888888888888776666655533
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.68 Score=51.66 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=49.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001414 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1082)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A 216 (1082)
..+.+..|+..|.+++...|.....+..+|.++++. |+.-.|+.-...++.++|.. ...++.++.++..++++.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHh
Confidence 334455566666666666666666665555555543 33444555555555556555 45566666666666666666
Q ss_pred HHHHHHHHhhCC
Q 001414 217 RQAFQRALQLDP 228 (1082)
Q Consensus 217 ~~~~~~al~~~p 228 (1082)
+.+...+...+|
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 665555555555
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.49 Score=49.19 Aligned_cols=78 Identities=13% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhH
Q 001414 705 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY-LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 783 (1082)
Q Consensus 705 ~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~~~-La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~n 783 (1082)
+.++..|...++...+.|.|.+--..|..|+++ +|.++++|.. -+.-++-.++.+.|+..|.+++.++|.+|.+|+-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 378999999999999999999999999999998 6888888776 4556777899999999999999999999999865
Q ss_pred H
Q 001414 784 A 784 (1082)
Q Consensus 784 l 784 (1082)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.72 Score=32.77 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
.++.+||.+|..+|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.52 Score=46.96 Aligned_cols=59 Identities=29% Similarity=0.480 Sum_probs=37.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
.....++.+.|.+.|.+++.+.|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445566666666666666666666 5556666666666666666666666666666654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.9 Score=35.37 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 001414 712 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAI 771 (1082)
Q Consensus 712 ~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-~~~~~~La~~~~~~g~~~eA~~~l~~al 771 (1082)
..-|.-++.+.+..+|+..+.+++++..++++ ..++-+|..+|...|++.+++++...=+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788899999999999998766555 6677788899999999999887754433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.34 E-value=2.5 Score=36.88 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=44.6
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCH
Q 001414 680 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 744 (1082)
Q Consensus 680 ~~~~~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 744 (1082)
...|++..|++.+.+..+....+.... ...+..++|.++...|++++|+..++.++.......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 356788888888877777664322111 24566778888888888888888888888776555553
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=89.27 E-value=33 Score=36.47 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
|..-...|+.+- +.-...-.++..+..+|..++..|++..|...|-.. +++.+... +.-++
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~-------------~~ll~ 129 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAY-------------VMLLE 129 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHH-------------HHHHH
Confidence 444555666665 322222356777778888888888877777665322 11111100 00011
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC----------CHHHH--HHHHHHHHHhccHHh
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEAL--VALAVMDLQANEAAG 249 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~--~~la~~~~~~~~~~~ 249 (1082)
.....-.|.............|..+|+...|...+...++. .|. ....+ ..+-..-+..++...
T Consensus 130 ~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~ 209 (260)
T PF04190_consen 130 EWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPL 209 (260)
T ss_dssp HHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHH
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHH
Confidence 11223345542333333445567778888888877776655 331 22221 112222233333333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001414 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1082)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1082)
+..-...|...++.+|.....+..+|..|+...
T Consensus 210 F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 210 FKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 444455555555566666666777777776543
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.26 E-value=33 Score=38.06 Aligned_cols=162 Identities=9% Similarity=0.026 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK------------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-- 177 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-- 177 (1082)
.++.+=.+.+..+|....+|..+-.++... .-++.-+.+...++..+|++..+|..+..++.+.+.
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 677777778888998877776653333222 235666777788889999999999999999887764
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh------cc--
Q 001414 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK---LGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE-- 246 (1082)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~-- 246 (1082)
+..=+.++.++++.+|.+.-...+..-..-.. .....+=+.+..+++.-++.|..+|.....+.... |+
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~ 206 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFM 206 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccC
Confidence 57888999999999998733322222222222 22355567788888888999999988877666532 21
Q ss_pred -HHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001414 247 -AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1082)
Q Consensus 247 -~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1082)
..-...-+.....++-.+|.+..+|.+
T Consensus 207 ~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 207 PKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223455666777777778888777765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.55 E-value=2.1 Score=47.98 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1082)
......|+..|.+++...|.....+..++.++++. |+.-.|+.-+..++.++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566899999999999999999999999988886 567778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001414 184 FYKRALQVHPSC 195 (1082)
Q Consensus 184 ~~~~al~~~p~~ 195 (1082)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 998888888866
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.9 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001414 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1082)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~le~a 66 (1082)
.+.-.|..+...|++.|++++|.++|+.+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 35568999999999999999999999875
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.41 E-value=13 Score=40.93 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=18.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 749 YLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 749 ~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
.-|.+.|+.|+-++|.++|+.+...
T Consensus 272 LQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 272 LQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3477788888888888888776543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.68 Score=46.18 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=48.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChH
Q 001414 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588 (1082)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 588 (1082)
.....++.+.|.+.|.+++...|.....|+++|....+.|+++.|...|.+.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445677778888888888888888888888888888888888888888888888877644
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.26 E-value=3.3 Score=52.08 Aligned_cols=168 Identities=20% Similarity=0.184 Sum_probs=118.1
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 001414 345 YYGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRD 409 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~--------~p~~ 409 (1082)
....|+.....|.+.+|.. .+... -..+|.....+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455667777778877776 55533 3457888999999999999999999999988877543 2455
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHh---------hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc
Q 001414 410 AQAFIDLGELL-ISSDTGAALDAFKT---------KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479 (1082)
Q Consensus 410 ~~~~~~la~~~-~~~~~~~Al~~l~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 479 (1082)
...+..++... ..+....|+..+.+ ....|....+..+++.++...++++.|+.+++.|+...... .
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--~- 1091 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--L- 1091 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--c-
Confidence 56666676555 66677777777766 22355566677889999999999999999999998732100 0
Q ss_pred cccchhhhhhhhhHHhhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001414 480 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 547 (1082)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 547 (1082)
.+..-.....+..+++++...+++..|....+....
T Consensus 1092 --------------------------------g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1092 --------------------------------GPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --------------------------------CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 001123455667778888888888877776666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.13 E-value=24 Score=40.73 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~ 213 (1082)
-...+..|+++.+..+.... ..-|.- ..-....+..+.++|.++.|+.+.. + +..++.+ ..++|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeL---Al~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFEL---ALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHH---HHhcCCH
Confidence 34455566777766665411 112222 2233445555556666666655432 1 2334433 3456666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1082)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1082)
+.|.+.... .+++..|..||...+..|+ ++-|..+|+++-. +..|..+|...|+.+...++...
T Consensus 335 ~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKE-----LDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCC-----CSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHh-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHH
Confidence 666654432 2355667777777777766 6666666654321 22344445555555444444443
Q ss_pred H
Q 001414 294 A 294 (1082)
Q Consensus 294 ~ 294 (1082)
+
T Consensus 399 a 399 (443)
T PF04053_consen 399 A 399 (443)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.99 E-value=47 Score=36.65 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHhhc-CCCHH--------HHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCCCCCchHHHHHHHHHH
Q 001414 649 THLEKAKELYTRVIVQH-TSNLY--------AANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVY 718 (1082)
Q Consensus 649 ~~~~~A~~~~~~~l~~~-p~~~~--------a~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~la~~~ 718 (1082)
+.+.+|..+-+..+... -.|-. .++.+..++...|+...-...+...+.... ...........+.|-.+|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 77888887776655322 12222 334445556666776666666665554431 111112233445566888
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcchhhH
Q 001414 719 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 783 (1082)
Q Consensus 719 ~~~g~~~~Ai~~~~~al~~~~~~~~--~~~~~~La~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~n 783 (1082)
+..+.|+.|-....+..--....++ +..+|++|++..-.++|..|.++|..|+.+.|++..+-|-
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~ 286 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR 286 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence 8889999998886665421111122 6778899999999999999999999999999997665543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.91 E-value=1 Score=31.93 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 001414 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 773 (1082)
Q Consensus 744 ~~~~~~La~~~~~~g~~~eA~~~l~~al~~ 773 (1082)
..++.+||.+|...|++.+|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.70 E-value=75 Score=38.62 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=34.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001414 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615 (1082)
Q Consensus 559 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 615 (1082)
+...++...+++.++.+.+. ..+.+|..|..+-.++...+..+.-.+...+++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~---~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCER---LGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHH---hCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 44556777788888777766 4455677777777777777755555555544443
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=6.7 Score=49.57 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHhcCCCC
Q 001414 1011 RLAAAGLED 1019 (1082)
Q Consensus 1011 ~~~~~~~~~ 1019 (1082)
.|-..|+.|
T Consensus 602 ~~~r~~~~~ 610 (1021)
T PTZ00266 602 DSMRSGVHD 610 (1021)
T ss_pred hhhhcccch
Confidence 444444433
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.39 E-value=4.8 Score=50.74 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 001414 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK----- 333 (1082)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 333 (1082)
.|.....+..|+.++...|+++.|+..-.++.- .+...+.....+..++...+..++...|+..+.++..
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 444444555555555555555555554444431 1223344455555555555555566666665555543
Q ss_pred hhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001414 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1082)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~l~kal~ 404 (1082)
..+..|........++.++...++++.|+.+++.++... | .....+..++.++...+++..|+...+....
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 112345555555566666666666666666666665532 2 2344555666666666666666665555443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.29 E-value=3.2 Score=43.29 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001414 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1082)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1082)
++..|.....+.+.++|.++.-+--+|.+|.+.|.+.-|+..+...+...|+.+.+-...+..
T Consensus 196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334888888888888888888888888888888888888888888888888887776655543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.10 E-value=64 Score=39.25 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---H--
Q 001414 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL---L-- 420 (1082)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~---~-- 420 (1082)
...+++-.|+|+.|+.++-+ .+.+. .+++.++..+. |-..-.-..-...+..++.++.. ++++.+ |
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~--gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~ 336 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYY--GLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR 336 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHT--T-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHc--CCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH
Confidence 45778889999999999877 22222 34444444443 32222222225555555544322 333322 2
Q ss_pred --hcCCHHHHHHHHHhh
Q 001414 421 --ISSDTGAALDAFKTK 435 (1082)
Q Consensus 421 --~~~~~~~Al~~l~~~ 435 (1082)
...++..|+.++--.
T Consensus 337 ~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 337 SFEITDPREALQYLYLI 353 (613)
T ss_dssp TTTTT-HHHHHHHHHGG
T ss_pred HHhccCHHHHHHHHHHH
Confidence 667888898888773
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.03 E-value=53 Score=36.25 Aligned_cols=104 Identities=17% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CcHHH
Q 001414 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYP--DNCET 378 (1082)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p--~~~~~ 378 (1082)
..|+.+..+|...|+...-...+...+.... ...........|-..|+..+.|+.|-....+..- ... ..+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 5677777788888887666666666554221 1122233445567788888888888887766541 111 23457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001414 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1082)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~l~kal~~~p~~ 409 (1082)
++.+|.+..-+++|..|.++|-.++...|.+
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 7888999999999999999999999999974
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.93 E-value=15 Score=42.44 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHhcCChHHHHHHHH--HHHHhCCChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhcccchHHH
Q 001414 529 LEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606 (1082)
Q Consensus 529 ~~~~g~~~~A~~~~~--~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 606 (1082)
....++++.+..+.. .++..-| ..-...++..+.+.|-++.|+.+.+ ++...+.|+ ++.|+.+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHH
Confidence 334577777666554 2221122 3345566666777777777765432 355555544 566777776
Q ss_pred HHHHHHhhhcCCCCcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCch
Q 001414 607 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 686 (1082)
Q Consensus 607 ~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~~~~~ 686 (1082)
.+..+. ..+...|-.||.. .+.. |+++-|...|.++-. +.+|..+|.-.|+.+
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~-AL~~------------g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDE-ALRQ------------GNIELAEECYQKAKD--------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHH-HHHT------------TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred HHHHHh------cCcHHHHHHHHHH-HHHc------------CCHHHHHHHHHhhcC--------ccccHHHHHHhCCHH
Confidence 665432 1255577777777 6666 777777777765422 235566666666655
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 687 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 733 (1082)
Q Consensus 687 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~ 733 (1082)
.=..+...+.... + +...-++++..|++++.++++..
T Consensus 391 ~L~kl~~~a~~~~------~----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERG------D----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-----------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------C----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444443322 1 12222455556777666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.38 E-value=3.2 Score=45.26 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=61.2
Q ss_pred ChhHHHHH----HHHHHHcCCHHHHHHHHHhcCCCchhhhhhh--------h-HHHHHHHHHHHHHHHHHhchhhhhhhh
Q 001414 39 PLDLWLII----AREYFKQGKVEQFRQILEEGSSPEIDEYYAD--------V-RYERIAILNALGVYYTYLGKIETKQRE 105 (1082)
Q Consensus 39 ~~~~~~~~----a~~y~~~g~~~~A~~~le~a~~~~~~~~~~~--------~-~~~~~~~~~~la~~y~~~g~~~~~~~~ 105 (1082)
..+-|+.. |..+|+||+|..|.--|..+++.+....+.. + ..-..-+-..|..||+.+++.+
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpd----- 245 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPD----- 245 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCc-----
Confidence 34556654 5678999999887777666654322211110 0 0011123345666677666666
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKI 153 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 153 (1082)
-|+...-+.+-++|.....++..|.++-...+|.+|...+..
T Consensus 246 ------lALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 246 ------LALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred ------hHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666776666666666666666666666655543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.23 E-value=67 Score=36.61 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001414 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1082)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1082)
.|-+-.++..+..++.......-...++.+++....+- ..++.++.||... ..++-...|++.++.+-++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34444555555555555555566666777777665543 4567777887777 55666777777777777777766677
Q ss_pred HHHHHHhccHHhHHHHHHHHHHHHHh
Q 001414 238 AVMDLQANEAAGIRKGMEKMQRAFEI 263 (1082)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1082)
+..|.. ++ ...+..+|.+++-.
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHHH
Confidence 766665 34 56666677666543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=85.60 E-value=7.5 Score=32.05 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Q 001414 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1082)
Q Consensus 200 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1082)
.+.-|.-++...+..+|+..|.++++..++....+..||.+.....+.+.+.+.+.+..+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777778888888888887777777666666555444443446666665443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.03 E-value=0.75 Score=54.30 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhCCC
Q 001414 814 ENAVRVFSHLSAASN 828 (1082)
Q Consensus 814 ~~A~~~f~~l~~~~~ 828 (1082)
.+|+.-|.++...+.
T Consensus 1257 ~~aIh~FD~ft~~~~ 1271 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGG 1271 (1516)
T ss_pred HHHHhhhhhheeccc
Confidence 366777777765443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.02 E-value=17 Score=38.67 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
++..++..+...|+++.+...+++.+..+|-+-..|..+-..|+..|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555444
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=84.98 E-value=19 Score=39.67 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=58.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 001414 168 QACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~--------p~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
-|..++++++|..|.--|..+|.+. |.. ...+--.+..||..+++.+.|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3455666666666666666665542 111 12234457889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhccHHhHHHHHHH
Q 001414 231 VEALVALAVMDLQANEAAGIRKGMEK 256 (1082)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1082)
...++..|.+...... |.+|-..
T Consensus 262 frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHH
Confidence 8888888887777666 5555443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=84.56 E-value=6.4 Score=34.30 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=30.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001414 138 LLAKGEVEQASSAFKIVLEADR----DN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1082)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p----~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1082)
.+..|+|..|+..+.+.+.... .. ..+++.+|.+....|++++|+..++.++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4556666666655555544321 11 2345556666666666666666666666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.8 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=32.2
Q ss_pred hHHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCcHHHHHHhHhH
Q 001414 587 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631 (1082)
Q Consensus 587 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~ 631 (1082)
..+|..+...+.+.|++++|.+.|+++.+..-.++.+++..+-+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777777777888888888888888777666677776665544
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.1 Score=29.87 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRK 737 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~ 737 (1082)
++|..||.+-+..++|.+|+.-|++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=83.61 E-value=46 Score=32.46 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHcCCChHHHHHhhhhhhc-----ccchHHHHHHHHHhhh
Q 001414 553 VDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK-----NDDWVKAKETFRAASD 615 (1082)
Q Consensus 553 ~~a~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~ 615 (1082)
+++-..|+..+. .+.+++.|..+|+.--.-+ ..+...+.+|..++. .++...|+..|..+-.
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD 101 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence 344444444432 2345555555554432222 223344444443322 2245555555555444
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.59 E-value=35 Score=37.84 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=100.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----C
Q 001414 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFNR----G 176 (1082)
Q Consensus 103 ~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g 176 (1082)
...+...++.-+.+...+++.+|++..+|..+..++.+.+. +..=+.+++++++.+|.|..+|..+=.+.... .
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 44566678888999999999999999999999999998874 68889999999999999988885544443332 2
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001414 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALA 238 (1082)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la 238 (1082)
...+=+.+..+++.-++.+ -.+|.....++-. .|+ ...-+.....++-.+|++..+|+..-
T Consensus 164 ~~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~r 236 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHR 236 (421)
T ss_pred cchhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehH
Confidence 3567788899999988888 4555555444432 231 22344556667778999999988733
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.6 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 001414 710 VWINLAHVYFAQGNFALAMKMY 731 (1082)
Q Consensus 710 ~~~~la~~~~~~g~~~~Ai~~~ 731 (1082)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=83.45 E-value=66 Score=34.21 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCChHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHcCCChHHHHHh
Q 001414 516 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593 (1082)
Q Consensus 516 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~--~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 593 (1082)
-.++..+..+|..+.+.|++..|..+|-.. ++..... .+....... -.|.....+...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTK---------------GYPSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHh---------------cCCcchhHHHHH
Confidence 357889999999999999998888776432 2222211 122222222 234444444333
Q ss_pred h-hhhhcccchHHHHHHHHHhhhc----CCC--------CcHHHHHHhHhHHHHHHhhhhccCchHHhhHHHHHHHHHHH
Q 001414 594 G-DLELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 660 (1082)
Q Consensus 594 g-~~~~~~g~~~~A~~~~~~al~~----~~~--------~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 660 (1082)
+ .-|+..++...|...+....+. .|. ...+.++....+ .+......+ ...+..-.+.|..
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~~ 219 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYKP 219 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhCc
Confidence 3 3356677888887777665544 221 112233333332 222211111 1345555555666
Q ss_pred HHhhcCCCHHHHHHHHHHHHh
Q 001414 661 VIVQHTSNLYAANGAGVVLAE 681 (1082)
Q Consensus 661 ~l~~~p~~~~a~~~la~~~~~ 681 (1082)
.|+.+|.-...+..+|.+|..
T Consensus 220 ~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 220 SLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp ---HHHHTHHHHHHHHHHHH-
T ss_pred cccccHHHHHHHHHHHHHHCC
Confidence 666666666666677777665
|
; PDB: 3LKU_E 2WPV_G. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.26 E-value=3.9 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=7.4
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 001414 166 LGQACVEFNRGRYSDSLEF 184 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~ 184 (1082)
+++|..+..+|+|++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.93 E-value=3.6 Score=28.33 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 001414 129 STWVGKGQLLLAKGEVEQASSAFK--IVLEADRDN 161 (1082)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~--~al~~~p~~ 161 (1082)
+.|+.+|..+..+|++++|+..|. -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 468899999999999999999944 777777654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.76 E-value=7.7 Score=41.16 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=57.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1082)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~ 405 (1082)
.+..++..++..+...|+++.++..++..+..+|.+-..|..+..+|...|+...|+..|+++-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677888888999999999999999999999999999999999999999999999998887653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=81.83 E-value=3.2 Score=28.10 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 001414 741 NTDAQILLYLARTHYEAEQWQDCKKSLLR 769 (1082)
Q Consensus 741 ~~~~~~~~~La~~~~~~g~~~eA~~~l~~ 769 (1082)
.+|..+|..|...|++.|+.++|.++|.+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666666667777777776666654
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.57 E-value=8.3 Score=40.33 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001414 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~~~ 420 (1082)
..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+++.+-.....+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3345567888999999999999999999999999999999999999999999999999999999987766555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.93 E-value=16 Score=36.54 Aligned_cols=53 Identities=28% Similarity=0.291 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHH
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----NCETLKALGHIYVQLGQIEKA 395 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A 395 (1082)
+...+.||..|. ..+.++|+..+.+++...+. +++++..|+.+|.+.|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444443 34555555555555554322 355555555555555555554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.75 E-value=2.8 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHh
Q 001414 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (1082)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~le~ 65 (1082)
...+.+|.+|+.+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578899999999999999999863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.55 E-value=1e+02 Score=34.53 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001414 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
...|+.++..-.-.|+.+-|.-.-.+++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 334555555555555555555555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1082 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 3e-12 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-11 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 3e-12 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 2e-10 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-09 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-06 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 2e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-05 | ||
| 3zgq_A | 482 | Crystal Structure Of Human Interferon-induced Prote | 5e-05 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 1e-04 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 1e-04 | ||
| 4hoq_A | 482 | Crystal Structure Of Full-length Human Ifit5 Length | 3e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5 Length = 482 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 8e-43
Identities = 65/364 (17%), Positives = 143/364 (39%), Gaps = 22/364 (6%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A ++ + R + + + +++++ + ++ + A V
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
RG+ +++E Y+ AL++ P + + G + A QA+ ALQ +P+
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDG-YINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 233 ALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
L L E A +A E P A+A + L F G+ +L
Sbjct: 137 VRSDLGNLLKALGRLEEA-----KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E A+ + P +Y NL +++A Y+ ++ ++ P+ + L
Sbjct: 192 FEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS-PN-HAVVHGNLAC 245
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V + G A+ + + +E+ P + L + + G + +A++ A ++ P A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 411 QAFIDLGELLISSDTG---AALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSF 465
+ +L + + G A+ ++ KA E P +N+ + ++G+ + A +
Sbjct: 306 DSLNNLANIK--REQGNIEEAVRLYR-KALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 466 KDAL 469
K+A+
Sbjct: 363 KEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-42
Identities = 74/344 (21%), Positives = 139/344 (40%), Gaps = 18/344 (5%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G+ E A + + DN LL + + F R S F A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
+P A +G + GQL +A + ++ AL+L P+ ++ + LA + E A
Sbjct: 62 QNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
++ A + P + L N G+ + A+ P + ++
Sbjct: 121 -----VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAW 172
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
NL ++++G+ A ++ +V ++ P F+ Y LG V + F A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV-TLD-P-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGA 427
L + P++ L +Y + G I+ A + R+A ++ P A+ +L L
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
Query: 428 ALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
A D + A P + LNN+ I E+G E A + ++ AL
Sbjct: 290 AEDCYN-TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 75/404 (18%), Positives = 150/404 (37%), Gaps = 48/404 (11%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALG-------- 90
+ +A ++ G E Q+ + V +I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 91 ------------VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y+ LG + ++ + +E A ++Y A R+ ++ L
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+A G++E A A+ L+ + D + GR ++ Y +A++ P+ A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
+G G++ A F++A+ LDP ++A + L + + + A +
Sbjct: 172 -WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-----VAA 225
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
RA + P A+ LA ++ G L A+ P +Y NLA +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALK 282
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
KG +A Y ++ + L ++ + G+ A+ + K LE++P+
Sbjct: 283 EKGSVAEAEDCYNTAL-RLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L + Q G++++A ++A +I P A A+ ++G L
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-35
Identities = 72/451 (15%), Positives = 148/451 (32%), Gaps = 89/451 (19%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
+ +P EA L + + + A +E + A + P LA G
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEA-----IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
Q +AL P +L + G E+A Y+ +++ +P F
Sbjct: 116 DMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP-NFA 169
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAH 462
+ P A N+ +++E+G + A
Sbjct: 230 LSLSPNHAVV--------------------------------HGNLACVYYEQGLIDLAI 257
Query: 463 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 522
+++ A+ E + +
Sbjct: 258 DTYRRAI------------------------------------ELQPHFPD-------AY 274
Query: 523 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582
NLA L++ A Y L + D+ LA I + + N++ ++ L +AL+V
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 583 NGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
++ A S L + + +A ++ A
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 5e-33
Identities = 73/432 (16%), Positives = 144/432 (33%), Gaps = 69/432 (15%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA + GD+E A + M ++ +P + L + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ--EP-DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ P E LG++Y + GQ+++A E R A ++ P +I+L L++ D
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 427 AALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 484
A+ A+ A + P V +++G + G E A + A+
Sbjct: 119 GAVQAYV-SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI--------------- 162
Query: 485 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 544
E N NL + + A +
Sbjct: 163 ---------------------ETQPNFAV-------AWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 545 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604
+ +++DAY+ L + K ++ AL ++ + L + +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254
Query: 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664
A +T+R A A +L N AL+ + + +A++ Y +
Sbjct: 255 LAIDTYRRAI-ELQPHFPDAYCNLAN-----ALKEKGS--------VAEAEDCYNTALRL 300
Query: 665 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 724
++ + N + E+G + + L+ + E NLA V QG
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQQGKL 355
Query: 725 ALAMKMYQNCLR 736
A+ Y+ +R
Sbjct: 356 QEALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-31
Identities = 89/483 (18%), Positives = 161/483 (33%), Gaps = 98/483 (20%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+ + Y+ G A + + + +P+N L+ L+ + Q + + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLA 59
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+ P A A + L N + GQ + AL + P Y NLA + + GD
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGD 116
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
E A Y++++ + N P LG + LG A + K +E P+
Sbjct: 117 MEGAVQAYVSAL-QYN-PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEV 440
LG ++ G+I A KA +DP A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--------------------------- 206
Query: 441 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 500
N+G + E F+ A ++ AL
Sbjct: 207 -----INLGNVLKEARIFDRAVAAYLRAL------------------------------- 230
Query: 501 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 560
L N V NLA + + A YR + + DAY LA
Sbjct: 231 ------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 561 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 620
K + ++ + + N AL++ + ++L+ L +++ + + +A +R A +
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPE 337
Query: 621 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680
+ A +L + L+ + + L++A Y I + A + G L
Sbjct: 338 FAAAHSNLAS-----VLQQQGK--------LQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Query: 681 EKG 683
E
Sbjct: 385 EMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-30
Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 68/449 (15%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + + GDF +A + ++ PDN L L I+ Q +++++ A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 405 IDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESA 461
+P A+A+ +LG + A++ ++ A P I+ N+ G+ E A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYR-HALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521
Q++ AL + + + V
Sbjct: 121 VQAYVSAL------------------------------------QYNPDLYC-------V 137
Query: 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581
+L LL+ + A Y + ++ A+ L + A+ + L+I +A+
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641
++ + +A LG++ + + +A + A + + +L +
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLAC-----VYYEQG 251
Query: 642 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 701
++ A + Y R I A L EKG ++D +
Sbjct: 252 L--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 702 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ 761
D NLA++ QGN A+++Y+ L + A LA + + Q
Sbjct: 304 H-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQ 356
Query: 762 DCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+ AI ++P+ + G +++
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 59/306 (19%), Positives = 119/306 (38%), Gaps = 45/306 (14%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D ++ +A G +E + L+ + VR + +L ALG
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQ------YNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 93 ----------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQ 136
++ LG + Q E A ++ KA +D + ++ G
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL----AIHHFEKAVTLDPNFLDAYINLGN 211
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196
+L ++A +A+ L ++ ACV + +G +++ Y+RA+++ P P
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
A + + G + +A + AL+L P + ++L LA + E A +
Sbjct: 272 DA-YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-----V 325
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
++A E++P A A + LA+ G+ + A+ ++ PT + +Y N+ +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNT 382
Query: 315 YHSKGD 320
D
Sbjct: 383 LKEMQD 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-38
Identities = 53/408 (12%), Positives = 123/408 (30%), Gaps = 42/408 (10%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILE----------------EGSSPEIDEYYADVRY 80
+ + + Y ++ +++ L ++ E + + Y
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 81 ERIAILNA--LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
+ +A L Y + + E + Y + + K L
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELR-----RAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ + +LE D N+ G + + HP
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
L +G+ + ++ +AR+ F ++ +DP+ A + A ++ A +
Sbjct: 376 -WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA-----ISA 429
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
A ++ + +L G L + +++ A+ L
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAF 486
Query: 317 SKGDYEKAGLYY----MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+K D + A ++ + K + + + LG KL + +A+ + L +
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
++ A+ +Y+ A L ++ I P + A L L
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 4e-36
Identities = 62/463 (13%), Positives = 137/463 (29%), Gaps = 40/463 (8%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
A +L + A K + +L E + DE A+ +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID--MHEPSTWVGKGQLLLAKGE 143
+ G++ T + A + Y +A +D +E + LL A E
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDR----AKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251
Query: 144 VEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + + D + +L + + E Y ++ + L
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL-LC 310
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRA 260
+ + + L++DP N++ +
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-----YLISNDL 365
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYH 316
+ +P A+ + ++ + A + P ++ A S+
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKI-------SEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
+G++++A Y + + + PY LG ++LG+ A + ++ +
Sbjct: 419 IEGEHDQAISAYTTAA-RLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKI-------DPRDAQAFIDLGELLIS-SDTGAA 428
L LG + ++ A + A + + A + +LG AA
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
Query: 429 LDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+DA + V I +++ K A ++L
Sbjct: 536 IDALN-QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 2e-32
Identities = 68/537 (12%), Positives = 151/537 (28%), Gaps = 66/537 (12%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACV 171
A K I P+ Q+ G+ +A +R + L V
Sbjct: 103 AAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161
Query: 172 E---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216
+ R ++ + + + ++ G L +A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE--ASMCYLRGQVYTNLSNFDRA 219
Query: 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
++ ++ AL +D + EA L L + + +L L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336
+ + E L+ N S A + + + ++
Sbjct: 280 NKTSHEDEL---RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-- 334
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P+ + Y + G+ +++ +P+ T A+G Y+ + +I +A+
Sbjct: 335 DPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 397 ELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHF 453
K++ +DP+ A+I I + A+ A+ A +G+ H
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT-TAARLFQGTHLPYLFLGMQHM 452
Query: 454 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 513
+ G A++ + +
Sbjct: 453 QLGNILLANEYLQSSY------------------------------------ALFQYDPL 476
Query: 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 573
L V FN + + I+ A +L + + + + L + +I
Sbjct: 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536
Query: 574 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 630
+ +N+ L ++ N + + + L A + A + A+ L
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMASDLLKR 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 67/538 (12%), Positives = 136/538 (25%), Gaps = 83/538 (15%)
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
+LA + TG + + L S Y A D++ A +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 333 KEINKPHEFIFP-------------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y GQV L +F A +++ L + E
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKT 434
L ++ E L + DA L L ++ + A D +
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297
Query: 435 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 494
G E ++L F + F L
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL------------------------- 332
Query: 495 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 554
E D +++ V L + + ++ ++ ++ +
Sbjct: 333 -----------EIDPYNLD-------VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374
Query: 555 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 614
+L + N + + +++ ++ ++ A + +A + A+
Sbjct: 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434
Query: 615 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 674
L LG + A E + N
Sbjct: 435 RL-FQGTHLPYLFLGM-----QHMQLGN--------ILLANEYLQSSYALFQYDPLLLNE 480
Query: 675 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQ 732
GVV K + + F + + W NL H Y + A+
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 733 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
L DA + +A + + L ++ ++P+ A+++
Sbjct: 541 QGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-23
Identities = 61/572 (10%), Positives = 134/572 (23%), Gaps = 98/572 (17%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +Y + ++ L + + A L G +A+ + + +
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLA--QVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 234 LVALAVMDL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288
+A + A G K ++ + A+ + GQ +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213
Query: 289 QLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ A ++ L ++ D E + + + F+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + D ++ + + + L + + K +
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464
IDP + +V E GE +
Sbjct: 334 IDPYNL--------------------------------DVYPLHLASLHESGEKNKLYLI 361
Query: 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524
D + + W V + +
Sbjct: 362 SNDLV------------------------------------DRHPEKAVT-WLAVGIYYL 384
Query: 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584
+ + A + + A++ A +I A ++
Sbjct: 385 CVNKISE-----ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 644
LG ++ + + A E +++ A D LG N+
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSY-ALFQYDPLLLNELGV-----VAFNKSDMQ 492
Query: 645 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 704
H + A L + G + +D + D Q ++
Sbjct: 493 TAIN-HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST---- 547
Query: 705 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 736
+V +A VY + LA+ L
Sbjct: 548 -NDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 66/537 (12%), Positives = 144/537 (26%), Gaps = 95/537 (17%)
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSY---YNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L++Q + A V + + + LA+ Y GDY +A + N+
Sbjct: 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARA-KCLLTKEDLYNRSS 150
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LG 383
Y +KL D++ AL + D K G
Sbjct: 151 AC---RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG-----AALDAFKTKAGE 438
+Y L ++A+E ++A +D + +AF L + + L+ +
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 439 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 498
+ L + + + + + ++
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----------------------------- 298
Query: 499 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 558
+ +L A L + + IL +D Y
Sbjct: 299 -------NGLEKSSD-------LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 559 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 618
A + N+ + + + +G L + +A+ F +S D
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-D 403
Query: 619 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 678
+ A + + + E ++A YT G+
Sbjct: 404 PQFGPAWIGFAH-----SFAIEGE--------HDQAISAYTTAARLFQGTHLPYLFLGMQ 450
Query: 679 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738
+ G ++ + P + L V F + + A+ +QN L
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYD-----PLLLNELGVVAFNKSDMQTAINHFQNALLLV 505
Query: 739 YYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
A L + + + + +L + + L+ ++ + +
Sbjct: 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 64/455 (14%), Positives = 136/455 (29%), Gaps = 47/455 (10%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 407 P----------------RDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPI-EVLNNIG 449
A LGE + + G + G
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 450 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEND 508
++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 208 QVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 509 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 568
+ + + L+ L D + + Y + + D L A R+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 569 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 628
+ + + L+++ + + ++ + K D + + L++
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLAV 379
Query: 629 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 688
G Y+ + + +A+ +++ A G A +G+ D +
Sbjct: 380 G--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 689 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 748
+T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 427 ISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLN 479
Query: 749 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 783
L + Q A+ L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 18/302 (5%)
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
V + + + +V+E D + L + ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLG-KARQAFQRALQLDPENVEALVALAV--MDLQA 244
+ ++PS P + +G +G AR+ +A L+ A +A
Sbjct: 82 LVDLYPSNPVS-WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
++ A M A ++ C + + Y+ + T L E+ AL++ P
Sbjct: 141 HDQA-----MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED 192
Query: 305 SHSYYNLARSYHSKGDYEKAGLYY------MASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + G+++ A ++ + ++ ++ LG V KL +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
AL + L + P N T A+G+I+ +G E A + A + D + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 419 LL 420
+
Sbjct: 313 CI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 60/375 (16%), Positives = 109/375 (29%), Gaps = 64/375 (17%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ I + + Q LD+ + +A ++ + ++E D ++A
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVME------KDPFHASCLPV 61
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
I L L + E +K + P +W G L
Sbjct: 62 HIGTLVELN--------------KANE----LFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103
Query: 142 GE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
G E A ++ PA + + ++ Y A Q+ C +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM- 162
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L IGL A + F +AL + PE+ + + V+ Q E + + A
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDA 219
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
E A+ NL
Sbjct: 220 LEKIK----------------------------AIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y +A Y+ + P Y +G + +G+F +A+ F L + D+ ++
Sbjct: 252 YAEALDYHRQ-ALVLI-PQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 381 ALGHIYVQLGQIEKA 395
LGH +A
Sbjct: 309 MLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 51/337 (15%), Positives = 107/337 (31%), Gaps = 56/337 (16%)
Query: 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ + + ++ ++N+ ++ A + + + ++ P + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI 63
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL---QANEAAGIRKGMEKMQRAF 261
+L + + + + L P N + A+ L NE A + +A
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA-----RRYLSKAT 118
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A + F +H TA + + Y +
Sbjct: 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTNNS 175
Query: 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------- 372
+ A ++ ++ I E F + +G V + G++++A F LE
Sbjct: 176 KLAERFFSQAL-SIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 432
L LGH+ +L + +A + R+A + P++A +
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY------------------- 273
Query: 433 KTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ IG IH G FE+A F AL
Sbjct: 274 -------------SAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-22
Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 45/344 (13%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+ + + + LA ++ + +LT + P + +
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGT 65
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYP 373
+ V P + ++ +G L +G A K +
Sbjct: 66 LVELNKANELFYLSHKLVD--LYPSNPV-SWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALDAF 432
A GH + + ++A AA++ + +G E +++++ A F
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 433 KTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 490
+A P V++ +GV+ F+ GE+++A + F DAL
Sbjct: 183 S-QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL--------------------- 220
Query: 491 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 550
+ +L NL + ++ A +R L
Sbjct: 221 -------------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 551 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
Y + I N + +++ + AL + +++MLG
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 5e-16
Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 32/303 (10%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 405 IDPRDAQAFIDLGELL--ISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFES 460
+ P + ++ +G + A KA G + E +
Sbjct: 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLS-KATTLEKTYGPAWIAYGHSFAVESEHDQ 143
Query: 461 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASM---LQFKDMQLFHRFENDGNH-VELPW 516
A ++ A L + L++ E + + +
Sbjct: 144 AMAAYFTAA-------QLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 517 NKVTVLFNLARLLEQIHDTVAASVLYRLIL---------FKYQDYVDAYLRLAAIAKARN 567
V+ + + Q + A + L + L + +
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250
Query: 568 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 627
+++ +AL + + + S +G + ++ A + F A D+++
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTM 309
Query: 628 LGN 630
LG+
Sbjct: 310 LGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 37/278 (13%), Positives = 78/278 (28%), Gaps = 27/278 (9%)
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
V+ +LA D L +++ K + N L ++ +
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 581 KVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 639
+ P + +G + A+ A+ + A ++ G+ +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTYGPAWIAYGH-----SFAV 137
Query: 640 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 699
E ++A Y G+ +++ F+Q A
Sbjct: 138 ESE--------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189
Query: 700 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-------AQILLYLAR 752
P V + V F G + A K + + L K + +L L
Sbjct: 190 PED-----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 753 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+ +++ + +A+ L P N + G
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 37/354 (10%), Positives = 99/354 (27%), Gaps = 64/354 (18%)
Query: 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501
++V+ ++ H+ +F+ ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVM-------------------------------- 49
Query: 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 561
E D H + L L + E L ++ Y ++ +
Sbjct: 50 ----EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHKLVDLYPSNPVSWFAVGC 98
Query: 562 IAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 620
+ + + +++A + Y A G + +A + A+
Sbjct: 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-MKG 157
Query: 621 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680
L +G + A+ +++ + + + + GVV
Sbjct: 158 CHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALSIAPEDPFVMHEVGVVAF 204
Query: 681 EKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 736
+ G++ ++ F ++ + + + NL HV +A A+ ++ L
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264
Query: 737 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+A + H +++ A+ L + G ++
Sbjct: 265 --LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 53/381 (13%), Positives = 102/381 (26%), Gaps = 94/381 (24%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ T + ++ +N + + +L + + +L + DP A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 421 ISSDTGAALDAFKT--KAGEEVP--IEVLNNIGVIHFEKGE-FESAHQSFKDALGDGIWL 475
+ A + F K + P +G + G E A + A
Sbjct: 67 --VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA------- 117
Query: 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535
T L+ A W +
Sbjct: 118 TTLEKT------YGPA------------------------WI------AYGHSFAVESEH 141
Query: 536 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595
A Y + L + NN +L+ ++AL + + P + +G
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201
Query: 596 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 655
+ +N +W A++ F A + A+ NE K E
Sbjct: 202 VAFQNGEWKTAEKWFLDALEK-----------------IKAIGNEVTVDKWEPLL----- 239
Query: 656 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 715
+NL G V + ++ + D Q Q + +
Sbjct: 240 -----------NNL------GHVCRKLKKYAEALDYHRQALVLIP-----QNASTYSAIG 277
Query: 716 HVYFAQGNFALAMKMYQNCLR 736
+++ GNF A+ + L
Sbjct: 278 YIHSLMGNFENAVDYFHTALG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 26/228 (11%), Positives = 75/228 (32%), Gaps = 20/228 (8%)
Query: 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 608
Q+ +D + LA + ++ +L + ++ + + + L + ++ + +
Sbjct: 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFY 77
Query: 609 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 668
D + + ++G Y+ + ++ E A+ ++ +
Sbjct: 78 LSHKLVD-LYPSNPVSWFAVG--CYYLMVGHK----------NEHARRYLSKATTLEKTY 124
Query: 669 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 728
A G A + + D + + + G + + Y N LA
Sbjct: 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLTNNSKLAE 179
Query: 729 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 776
+ + L D ++ + ++ +W+ +K L A+ +
Sbjct: 180 RFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-35
Identities = 82/573 (14%), Positives = 164/573 (28%), Gaps = 65/573 (11%)
Query: 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112
Q+ SP + YA L G ++
Sbjct: 4 MNGEPDIAQLKG--LSPSQRQAYAVQ-------LKNRGNHFFTAKNFN-----------E 43
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A +YY A +D +EP + ++ G++E+ LE D+ ALL +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPE 229
+ G ++D++ +I + K + R Q+ P
Sbjct: 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Query: 230 NVEALVAL-----AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + N ++ + A + +AN
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
L+ + + + + K + A + S+ ++
Sbjct: 224 MYHSLLSANTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESI-NLHPTPNS--- 278
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 405 IDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESA 461
++P + +I L LL + F + + P EV I ++G+F++A
Sbjct: 339 LNPENVYPYIQLACLLYKQGKFTESEAFFN-ETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521
+ + A L + + K +V + ++
Sbjct: 398 IKQYDIA------KRLEEVQEKIHVGIGPL--------------IGKATILARQSSQDPT 437
Query: 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581
+ + A L A + LA + + +IEL ++
Sbjct: 438 QLDEEKFNA-------AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490
Query: 582 VNGKYPNALSMLGDLEL-KNDDWVKAKETFRAA 613
+ L E K ++A A
Sbjct: 491 LARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-30
Identities = 60/434 (13%), Positives = 127/434 (29%), Gaps = 38/434 (8%)
Query: 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG----KI 99
L + ++ + L + + ++E + +L + ++ G +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178
Query: 100 ETKQREKEEHFILATQYYNKASRIDMHEPSTWV--GKGQLLLAKGEVEQASSAFKIVLEA 157
E ++ A + A + L + SA +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217
+ AL F + D+ + ++ +HP+ I L + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL--TLADKENSQEFF 296
Query: 218 QAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ FQ+A+ L+PE M LQ + A E Q+A + P LA
Sbjct: 297 KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA-----KEDFQKAQSLNPENVYPYIQLA 351
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-- 333
+ G+ E PT A +GD++ A Y + +
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 334 -----------EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + QL F +A+ K E+ P + + L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPI 442
+ +Q+ +I++A EL +A + + + ++ + +
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKL----QATTFAEAAKIQKRLRAD---PIIS 521
Query: 443 EVLNNIGVIHFEKG 456
+ + KG
Sbjct: 522 AKMELTLARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 8e-30
Identities = 67/461 (14%), Positives = 130/461 (28%), Gaps = 63/461 (13%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
+ I+ Y G +E+ + LE I ++ R + +LG +
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLGNFTDAM 113
Query: 93 --YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L E + ++ + Q+L + +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
F LE N Y + ALQ S + L
Sbjct: 174 FDSHLEVSSVN------------TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
A L AL + A +Q + ++P
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT- 275
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ +LA + + A+ P +YY+ + Y DY+ A
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVD---LNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
+ + +N E ++PY L + K G F + F + +P E I
Sbjct: 333 FQKAQ-SLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-----------------ALD 430
G + A + A +++ + + +G L+ + A A+
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 431 AFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
KA E P + + + + + + A + F+D+
Sbjct: 450 LLT-KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-25
Identities = 68/675 (10%), Positives = 170/675 (25%), Gaps = 158/675 (23%)
Query: 113 ATQYYNKASRIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168
+ + + + +G +A ++ +E D +
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228
+ + G +EF +AL++ P A L LG A L L+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKA-LLRRASANESLGNFTDAMFDLS-VLSLNG 123
Query: 229 ENVEALVALAVMDLQANEAAGIRKGM--EKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
+ A + + +A + + R ++ P ++
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----------- 172
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ S ++ +Y+ A +++ + + +
Sbjct: 173 ------------------IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY-LV 213
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + S L+ + + L G + + AQ LL+++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 466
P + + +K + + F+
Sbjct: 274 PTP---------------------------------NSYIFLALTLADKENSQEFFKFFQ 300
Query: 467 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 526
A+ + + + ++
Sbjct: 301 KAV------------------------------------DLNPEYPP-------TYYHRG 317
Query: 527 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 586
++ + D A ++ + V Y++LA + + S NE
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
Query: 587 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 646
P + ++ D+ A + + A +
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAK--------------------------RLEEVQ 411
Query: 647 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 706
E H+ ++ + L + ++ +F+ + L T+ E +
Sbjct: 412 EKIHVGIG------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----R 460
Query: 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD---C 763
I LA + A++++++ T + A T EA + Q
Sbjct: 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE--KLQATTFAEAAKIQKRLRA 516
Query: 764 KKSLLRAIHLAPSNY 778
+ + L + Y
Sbjct: 517 DPIISAKMELTLARY 531
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-25
Identities = 69/485 (14%), Positives = 152/485 (31%), Gaps = 48/485 (9%)
Query: 319 GDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
G + ++ + G +F A+ ++ +E+ P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTKA 436
+ Y+ G +EK E KA +I P ++A + S + A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-- 118
Query: 437 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD--GIWLTLLDSKTKTYV-IDASASM 493
+ + E+ + A + + L G +L S T S
Sbjct: 119 -LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177
Query: 494 LQFKDMQLFHRFE----NDGNHVELPWNKVTVLFNLARLL--EQIHDTVAASVLYRLILF 547
L+ + ++ + ++ ++ + +A L + + +
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237
Query: 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 607
++ A +NNL + L+ E++ ++ N+ L ++ +
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFF 296
Query: 608 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 667
+ F+ A + + G + + AKE + + +
Sbjct: 297 KFFQKAV-DLNPEYPPTYYHRGQ-----MYFILQD--------YKNAKEDFQKAQSLNPE 342
Query: 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727
N+Y +L ++G+F S+ F + + F +P+V A + +G+F A
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKL-----KFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 728 MKMYQNCLR------KFYYN--------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 773
+K Y R K + T T + E++ K L +A L
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457
Query: 774 APSNY 778
P +
Sbjct: 458 DPRSE 462
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 43/393 (10%), Positives = 107/393 (27%), Gaps = 76/393 (19%)
Query: 27 SDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + D L+ + D ++A + + + + E A L
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA-------L 246
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+++ + A ++ + P++++ L K ++
Sbjct: 247 CYTGIFHFLKNNLLD-----------AQVLLQESINLH-PTPNSYIFLALTLADKENSQE 294
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
F+ ++ + + P + + F Y ++ E +++A ++P + +
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQLACL 353
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIY 264
YK G+ ++ F P E A + D + A +++ A +
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA-----IKQYDIAKRLE 408
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
+ T + + + + A
Sbjct: 409 EVQEKIHVGIGPLI---------------------GKATILARQSSQDPTQLDEEKFNAA 447
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV---------------- 368
+ E++ GL Q++L++ A+ FE
Sbjct: 448 IKLLTKAC-ELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Query: 369 ---------LEIYPDNCETLKALGHIYVQLGQI 392
L P ++ Y G +
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 65/398 (16%), Positives = 125/398 (31%), Gaps = 73/398 (18%)
Query: 43 WLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98
L + ++ G+ + QF ++ D Y R + +GK
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRR-------ATVFLAMGK 52
Query: 99 IETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158
+ A K + M + + +G LLL +G++++A FK VL+++
Sbjct: 53 SK-----------AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 159 RDNVPA---------------LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
L QA F+ Y+ ++ F + L+V R
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELR 160
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
C K G+ KA + A +L +N EA ++ + Q + + +++ ++
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKL 217
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ K + A G Y
Sbjct: 218 DQDHKRCFAHYKQ-------------------------VKKLNKLIESAEELIRDGRYTD 252
Query: 324 AGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A Y + +K E + + + K A+ +VL++ PDN LK
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Y+ ++A + A + + D Q L +
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 7e-29
Identities = 61/362 (16%), Positives = 124/362 (34%), Gaps = 49/362 (13%)
Query: 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186
+ + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + + A RL G K G+L +A F++ L+ +P E A +
Sbjct: 62 KVIALKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES-------- 112
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ +A E+ + AL+ + + L V +
Sbjct: 113 ---------QLVKADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEV---CVWDAE 155
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
A + +G+ KA A+ K K + +Y + + +LGD +L+
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKL--KS-DNTEAFYKISTLYYQLGDHELSLSEVR 212
Query: 367 KVLEIYPDNCETLKALGHI------------YVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
+ L++ D+ + ++ G+ A K +P A+ +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 415 DLGE-----LLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 467
E A+ ++ + P + L + + + ++ A Q ++
Sbjct: 273 RSKERICHCFSKDEKPVEAIRIC-SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331
Query: 468 AL 469
A
Sbjct: 332 AQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 5e-22
Identities = 58/459 (12%), Positives = 138/459 (30%), Gaps = 114/459 (24%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ L + + G A + A+V + + P + YY V L +G ++AL +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAV-DGD-P-DNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
KV+ + D GH+ ++ G++++A++ +K K +P + + +L+ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-- 119
Query: 427 AALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 486
++ L + + F+ ++ +A L
Sbjct: 120 ---------------MQRLRSQALDAFDGADYTAAITFLDKIL----------------- 147
Query: 487 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 546
E EL + + I D +
Sbjct: 148 -------------------EVCVWDAELRELRAECFIKEGEPRKAISD-------LKAAS 181
Query: 547 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606
D +A+ +++ + + +LS+ V E LK++ + + +
Sbjct: 182 KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---------- 231
Query: 607 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---- 662
K + L + R A Y V+
Sbjct: 232 -------------KKLNKLIESAE-----ELIRDGR--------YTDATSKYESVMKTEP 265
Query: 663 --VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 720
++T ++ + + + ++V + + + + A Y
Sbjct: 266 SVAEYTVRSK--ERICHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDRAEAYLI 318
Query: 721 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 759
+ + A++ Y+ + D QI L + +Q
Sbjct: 319 EEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 4e-21
Identities = 55/428 (12%), Positives = 120/428 (28%), Gaps = 123/428 (28%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAF 261
G GQL A F A+ DP+N A A + + ++AA + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVI 64
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A +G
Sbjct: 65 ALKMDFTAA-------------------------------------RLQRGHLLLKQGKL 87
Query: 322 EKAGLYY------------MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
++A + + + + D+ +A+T +K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF---------------- 191
Query: 430 DAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 489
I ++++ G+ E + ++ L LD D
Sbjct: 192 ----------------YKISTLYYQLGDHELSLSEVRECL-------KLDQ-------DH 221
Query: 490 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 549
+K ++ ++ L R + A+ Y ++
Sbjct: 222 KRCFAHYKQVKKLNKLIESAE----------ELIRDGRYTD-------ATSKYESVMKTE 264
Query: 550 QDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 605
+ + R+ +I + +E L++ NAL + L + + +
Sbjct: 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
Query: 606 AKETFRAA 613
A + + AA
Sbjct: 325 AIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 7e-20
Identities = 55/449 (12%), Positives = 115/449 (25%), Gaps = 102/449 (22%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464
+ A G + ++G+ + A
Sbjct: 66 LKMDFTAA--------------------------------RLQRGHLLLKQGKLDEAEDD 93
Query: 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524
FK L + S + + QL + ++ ++ F+
Sbjct: 94 FKKVL----------------KSNPSEQEEKEAESQLVK-----ADEMQRLRSQALDAFD 132
Query: 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584
A I IL + A + +I + A K+
Sbjct: 133 GADYTAAITF-------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185
Query: 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 644
A + L + D + R L L + ++ + K+
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCFAHYKQVK 232
Query: 645 KLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 704
KL L G++ + + V + SV
Sbjct: 233 KLNKLIES-----------------------AEELIRDGRYTDATSKYESVMKT-EPSVA 268
Query: 705 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 764
+ H + A+++ L+ + L A + E + +
Sbjct: 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAI 326
Query: 765 KSLLRAIHLAPSN---YTLRFDAGVAMQK 790
+ A ++ A +++
Sbjct: 327 QDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 553 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 612
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 613 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 667
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 728 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 783
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 784 AGVAMQKFSASTLQKTRR 801
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 41/367 (11%), Positives = 98/367 (26%), Gaps = 16/367 (4%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ + V A+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 228 PENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P+ V A+ L+ + + + +A + P +A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ + A +T P + + + + + ++ + + + +
Sbjct: 260 RLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQAH-GLT--PQQVVAI 313
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + L + L + + P + + L +++ +L +A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 463
P A G + +T L +A P + + + +
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433
Query: 464 SFKDALG 470
A G
Sbjct: 434 VLCQAHG 440
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 4e-32
Identities = 43/369 (11%), Positives = 98/369 (26%), Gaps = 24/369 (6%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V + + +A + + G A V++
Sbjct: 141 VAIASHDGGKQALETVQA----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
V A+ + L +A + P AI G + L
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQAL 255
Query: 211 GQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268
+ + +A L P+ V A+ + L+ + + + +A + P
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL-----LPVLCQAHGLTPQQV 310
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+A+ + + A +T P + + + + ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388
+ + E + G + L + L + + P+ + +
Sbjct: 368 CQAH-GLT--PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVPIEVLNN 447
L +++ +L +A + P+ A G + A L A + N+
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD-PALAALT----ND 479
Query: 448 IGVIHFEKG 456
V G
Sbjct: 480 HLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 7e-31
Identities = 38/359 (10%), Positives = 90/359 (25%), Gaps = 18/359 (5%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ + A V++ V A+ +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
L +A + P AI + L + +A L PE V A+ +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 237 LAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
L+ + + + +A + P +A+ + + A
Sbjct: 180 NGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+T P + + + + ++ + + + +
Sbjct: 235 HGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQA 288
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
L + L + + P + + G L +++ +L +A + P+ A
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348
Query: 415 DLGELLIS-SDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALG 470
+ L +A P + + + G + A G
Sbjct: 349 SHDGGKQALETVQRLLPVL-CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-30
Identities = 54/506 (10%), Positives = 130/506 (25%), Gaps = 59/506 (11%)
Query: 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171
+A + ++D + +G + + ++ L + V A+
Sbjct: 22 VAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG 81
Query: 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231
+ L +A + P AI + L + + +A L PE V
Sbjct: 82 KQALETVQRLLPVLCQAHGLTPQQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 232 EALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
A+ + L+ +A + + +A + P +A+ +
Sbjct: 141 VAIASHDGGKQALETVQAL-----LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A +T P + + + + ++ + + + G
Sbjct: 196 VLCQAHGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNG 249
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L + L + + P + + L +++ +L +A + P+
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Query: 410 AQAFIDLGELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 467
A G + +T L +A P + + + +
Sbjct: 310 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 468 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 527
A V + L
Sbjct: 370 AH------------------------------------GLTPEQVVAIASNGGGKQALET 393
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587
+ + A L + V A +A +Q + ++ +A + +
Sbjct: 394 VQRLLPVLCQAHGLT-------PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446
Query: 588 NALSMLGDLELKNDDWVKAKETFRAA 613
A++ G + V A
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 50/529 (9%), Positives = 116/529 (21%), Gaps = 83/529 (15%)
Query: 211 GQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
L A + LQLD + + AV + A A + P
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA-------PLNLTPE 70
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+A+ + + A +T P + + + + ++
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLP 127
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
+ E + + L ++ L + + P+ + + G
Sbjct: 128 VL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--IE 443
L +++ +L +A + P+ A G + L +A P +
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL-CQAHGLTPQQVV 243
Query: 444 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 503
+ + G + A
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAH---------------------------------- 269
Query: 504 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 563
V + L + + A L V A
Sbjct: 270 --GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIASNGGGK 320
Query: 564 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 623
+A +Q + ++ +A + + A++ + + + A +
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLTPEQVV 379
Query: 624 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 683
A S G K +++ + + + A
Sbjct: 380 AIASNGG-------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426
Query: 684 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 732
+ Q Q + A + +
Sbjct: 427 TVQRLLPVLCQAHGLTP-----QQVVAIASNGGGRPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 8e-21
Identities = 40/446 (8%), Positives = 97/446 (21%), Gaps = 42/446 (9%)
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399
E + + L + L + + P + + L +++ +L
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 400 RKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGE 457
+A + P A + +T AL +A P + + + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189
Query: 458 FESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEN----DGNHV 512
+ A G L + + +L V
Sbjct: 190 VQRLLPVLCQAHG-------LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242
Query: 513 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 572
+ L + + A L V A + +A +Q
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTP-------QQVVAIASNSGGKQALETVQRL 295
Query: 573 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 632
+ ++ +A + + A++ G + + + A + A S
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASHDG-- 352
Query: 633 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 692
K +++ + + + A G +
Sbjct: 353 -----------GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
Query: 693 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 752
Q + + A + + +
Sbjct: 402 CQAHGLTP-----EQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGG 454
Query: 753 THYEAEQWQDCKKSLLRAIHLAPSNY 778
E A+ +++
Sbjct: 455 GRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-12
Identities = 42/486 (8%), Positives = 102/486 (20%), Gaps = 99/486 (20%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H ++ + + + AG +++ G + +R+ALT
Sbjct: 4 HHHHHQWSGARALEALLTVAGELR-GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
L + P+ + + L +++ +L +A + P+ A
Sbjct: 63 --APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA------------ 108
Query: 425 TGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 484
+ + + A
Sbjct: 109 --------------------IASHDGGKQALETVQRLLPVLCQAH--------------- 133
Query: 485 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 544
L +V + + + + A +
Sbjct: 134 ----------------------------GLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 545 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604
+ V A +A +Q + ++ +A + + A++ G + +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225
Query: 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664
+ A + A S G + + +++ + +
Sbjct: 226 RLLPVLCQAH-GLTPQQVVAIASNGG-----GKQALET--------VQRLLPVLCQAHGL 271
Query: 665 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 724
+ A + Q Q + A
Sbjct: 272 TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGKQALETV 326
Query: 725 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 784
+ + + E Q L +A L P
Sbjct: 327 QRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384
Query: 785 GVAMQK 790
G Q
Sbjct: 385 GGGKQA 390
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 9e-12
Identities = 38/448 (8%), Positives = 88/448 (19%), Gaps = 32/448 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ + A L++ + G + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAH 462
+ P A + +T L +A P + + + +
Sbjct: 67 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 126
Query: 463 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 522
A G L + L L +V +
Sbjct: 127 PVLCQAHG------LTPEQVVAIASHDGGKQALETVQALLPVLCQA---HGLTPEQVVAI 177
Query: 523 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582
+ + + + V A +A +Q + ++ +A +
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Query: 583 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 642
+ A++ G + + + A + A S + +
Sbjct: 238 TPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASNSG-----GKQALET 291
Query: 643 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 702
+++ + + + A G + Q
Sbjct: 292 --------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-- 341
Query: 703 VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD 762
Q + A + + + E Q
Sbjct: 342 ---QQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGGGKQALETVQR 396
Query: 763 CKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
L +A L P Q
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQA 424
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-31
Identities = 61/386 (15%), Positives = 120/386 (31%), Gaps = 39/386 (10%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFIL------------ATQYYNKASRIDMHEPSTWVGK 134
++ GV + E+H L A ++ A D + +
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ LA G+ + A V++ D A L + + +G+ ++ + +K+ L+ +PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 195 CPGAIR--------------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
L + G A + L++ + E A
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL----- 295
++ E RK + ++ A ++ A ++ ++ G H L L
Sbjct: 187 FIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 296 ---AVTNHGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQ 350
++ K A G Y A Y + +K E + + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K A+ +VL++ PDN LK Y+ ++A + A + + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 411 QAFIDLGELLISSDTGAALDAFKTKA 436
Q L + D +K
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYKILG 389
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 62/505 (12%), Positives = 130/505 (25%), Gaps = 109/505 (21%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
G L + Q+ + + L G+ +D+L + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A +G+ A + +QL + A + + + A
Sbjct: 55 GDPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ ++ + P + +
Sbjct: 114 -----EDDFKKVLKSNPSENEEKEAQSQL----------------------IKSDEMQRL 146
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
+ A + GDY A + ++ E + +K G+ R A+++ +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---RELRAECFIKEGEPRKAISDLKAA 203
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
++ DN E + +Y QLG E + +R+ K+D + F ++
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK------- 256
Query: 429 LDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488
+ L G + A ++ +
Sbjct: 257 -------------LNKLIESAEELIRDGRYTDATSKYESVM------------------- 284
Query: 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548
+ + + E V + + V A + +L
Sbjct: 285 -----------------KTEPSIAEY---TVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324
Query: 549 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL-----KNDDW 603
D V+A A +I+ A + N L + + D+
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384
Query: 604 VKAKETFRAASDATDGKDSYATLSL 628
K R A + +Y L+L
Sbjct: 385 YKILGVKRNAKKQ-EIIKAYRKLAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 58/486 (11%), Positives = 127/486 (26%), Gaps = 113/486 (23%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H +++ ++ Y ++ + ++ K + LG+ L G AL+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-------MADVEK-------HLELGKKLLAAGQLADALSQ 48
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
F ++ PDN +++ +G+ + A L K ++ A
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA------------ 96
Query: 425 TGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 484
G + ++G+ + A FK L K+
Sbjct: 97 --------------------RLQRGHLLLKQGKLDEAEDDFKKVL-----------KSNP 125
Query: 485 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 544
+ + Q ++ L + A D AA
Sbjct: 126 SENEEKEAQSQLIKSD-----------------EMQRLRSQALNAFGSGDYTAAIAFLDK 168
Query: 545 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 604
IL + A + +I + A K+ A + L + D
Sbjct: 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 605 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664
+ R L L + ++ + K+ KL
Sbjct: 229 LSLSEVREC------------LKL-DQDHKRCFAHYKQVKKLN----------------- 258
Query: 665 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 724
+ L G++ + + V + + + H +
Sbjct: 259 ------KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR-SKERICHCFSKDEKP 311
Query: 725 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 784
A+++ L+ + L A + E + + + A ++ +R
Sbjct: 312 VEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 785 GVAMQK 790
A +
Sbjct: 370 EKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 9e-20
Identities = 56/468 (11%), Positives = 127/468 (27%), Gaps = 135/468 (28%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
Y S+ ++ L+ +G GQL A F A
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHLE------------LGKKLLAAGQLADALSQFHAA 52
Query: 224 LQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281
+ DP+N A A + + ++AA + + + ++ A
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVIQLKMDFTAA----------- 96
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY------------M 329
+G ++A +
Sbjct: 97 --------------------------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
+ + + GD+ +A+ +K+LE+ + E + +++
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIG 449
G+ KA L+ A+K+ + +A I
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEA--------------------------------FYKIS 218
Query: 450 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 509
++++ G+ E + ++ L LD D +K ++ ++
Sbjct: 219 TLYYQLGDHELSLSEVRECL-------KLDQ-------DHKRCFAHYKQVKKLNKLIESA 264
Query: 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKA 565
L R + A+ Y ++ + + R+
Sbjct: 265 E----------ELIRDGRYTD-------ATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307
Query: 566 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
+I + +E L++ NAL + L + + +A + + A
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 49/374 (13%), Positives = 110/374 (29%), Gaps = 49/374 (13%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY-YTYLG 97
L KQGK+++ F+++L+ + + + + ++ + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
+ A + +K + + + + + + +GE +A S K +
Sbjct: 151 LNAFGSGDYTA----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-----------GIGLC 206
DN A + + + G + SL + L++
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ G+ A ++ ++ +P E V + + ++ P
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
AL A + + ++ + H L ++ +K
Sbjct: 327 DNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
Y + VK K E I Y L L+ +PDN + +
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLA-------------------LQWHPDNFQNEEEKKKA 424
Query: 386 YVQLGQIEKAQELL 399
+ I A+E+L
Sbjct: 425 EKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 552 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 588
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 589 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 643
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 644 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 703
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 704 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 763
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 764 KKSLLRAIHLAPSN 777
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 9e-31
Identities = 61/455 (13%), Positives = 124/455 (27%), Gaps = 61/455 (13%)
Query: 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111
+ ++ F + + + E+ A + N L G+ E E
Sbjct: 27 GENSLDDFEDKVFYRTEFQNREFKAT-------MCNLLAYLKHLKGQNE----AALECLR 75
Query: 112 LATQYY--NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL---- 165
A + A + ++ TW + G + V
Sbjct: 76 KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135
Query: 166 ------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRY-KLGQLGKAR 217
G ++ + + +++AL+ P P L I R A
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
++A++L+P+N V LA+ + E +G + ++ A E P L A
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255
Query: 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG------------DYEKA 324
+ + +L + AL P ++ + + Y +K K
Sbjct: 256 FYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 325 GLYYMASVKEINKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
+V + K E L + + A F+K
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Query: 381 ALGHI----YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKA 436
Q+ +KA + KI+ + + L
Sbjct: 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK----------EKMKDKLQKIAKMR 422
Query: 437 GEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ E L+ + + + + A + + L
Sbjct: 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 64/433 (14%), Positives = 143/433 (33%), Gaps = 51/433 (11%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
+ + + ++A +G+ E + L + E+ +
Sbjct: 44 FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y ++G++ Q ++ + ++ + RI+ E G +L + E+A F+
Sbjct: 104 YYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 153 IVLEADRDNVPALLGQACVEF---NRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGL--C 206
LE N G A + N ++++ ++A++++P + L + L
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
R + + G+ + + AL+ P + L + A + +E K +E +++A E P
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN 279
Query: 267 CAMALNYLANHFFFTGQHFL------------VEQLTETALA----VTNHGPTKSHSYYN 310
A + + + + +L A+A
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL-KLGDFRSALTNFEKVL 369
LA + YE+A Y+ + P + G QL ++ A+ +F + +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 370 EIYPDNCETLKA------------------------LGHIYVQLGQIEKAQELLRKAAKI 405
+I + E K L + ++++A E + +
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 406 DPRDAQAFIDLGE 418
A GE
Sbjct: 460 GSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 3e-21
Identities = 73/511 (14%), Positives = 142/511 (27%), Gaps = 109/511 (21%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNL 311
+ F+ + A N LA GQ+ + A + ++ N
Sbjct: 41 RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINK-------PHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y+ G +Y K + G +++ A
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 365 FEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420
FEK LE P N E L +L + A + LR+A +++P + + L L
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 421 -ISSDTGAALDAFK--TKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 475
+ + + K +A E+ P +VL + + K E + A + K A
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA------- 273
Query: 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535
+E N + +
Sbjct: 274 ------------------------------------LEYIPNNAYLHCQIG--------- 288
Query: 536 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595
YR +F+ + + + K + ++ + +A + N S+L
Sbjct: 289 ----CCYRAKVFQVMNLRENGMYGKR--KLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Query: 596 LELKNDDWVKAKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 653
L D + +A+ F+ + T L GN+ + ++ E +A H +
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-MKCEDKA----IHHFIE 397
Query: 654 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 713
++ L + + +SK+ +
Sbjct: 398 GVKIN--------QKSREKEKMKDKLQKIAKMRLSKN--------------GADSEALHV 435
Query: 714 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 744
LA + A + + L A
Sbjct: 436 LAFLQELNEKMQQADEDSERGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 2e-19
Identities = 67/495 (13%), Positives = 145/495 (29%), Gaps = 82/495 (16%)
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPS 194
L+ + ++ E A + A ++ +G+ +LE ++A ++
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 195 CPGA--------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Y +G+L + + + + +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ G + +RA + E AL P
Sbjct: 144 WTRLKCGGNQNERAKVCF---------------------------EKALEKK---PKNPE 173
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG----QVQLKLGDFRSAL 362
LA + + ++ + + I + + L +++ + +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 420
E+ LE P + L++ Y + + +KA ELL+KA + P +A +G
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 421 ------------------ISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFES 460
+ G A+ K KA E V + + +H ++E
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLK-KADEANDNLFRVCSILASLHALADQYEE 352
Query: 461 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 520
A F+ L K + + ++ + V++ K
Sbjct: 353 AEYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSR 406
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
+ L++I ++ L K +A LA + + +Q + E L
Sbjct: 407 EKEKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457
Query: 581 KVNGKYPNALSMLGD 595
+ P+A S G+
Sbjct: 458 ESGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 3e-13
Identities = 50/471 (10%), Positives = 116/471 (24%), Gaps = 114/471 (24%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH------EFIFPYYGLGQVQLKL 355
K+ LA H KG E A + + I + H + + V +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 356 GDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLG--QIEKAQELLRKAAKI 405
G +KV + ++ E G ++ G Q E+A+ KA +
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 465
P++ + L D ++A
Sbjct: 168 KPKNPEFTSGLAIASYRLD-----------------------------NWPPSQNAIDPL 198
Query: 466 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 525
+ A+ + ++ L L +
Sbjct: 199 RQAI------------------------------------RLNPDNQYLKVLLALKLHKM 222
Query: 526 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 585
E+ + L L K D A + ++ +IEL+ +AL+
Sbjct: 223 REEGEEEGE---GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 586 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 645
+G V + +++ +
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNL-------------------------RENGMYGKRKLLE 314
Query: 646 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 705
L + A + + + + + A Q++ ++ F + V
Sbjct: 315 L----IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Query: 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 756
Q+ + + A+ + ++ + + + + + +
Sbjct: 371 QLLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 67/519 (12%), Positives = 130/519 (25%), Gaps = 115/519 (22%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K H +NL +S D+E Y K L ++ G +AL
Sbjct: 17 KCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKAT----MCNLLAYLKHLKGQNEAALE 72
Query: 364 NFEKVLEIY---------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
K E+ + T +Y +G++ Q + K + + + +
Sbjct: 73 CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132
Query: 415 DLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIG--VIHFEKGEFESAHQSFKDALGDG 472
E+ G + + E A F+ AL
Sbjct: 133 IES------------------------PELDCEEGWTRLKCGGNQNERAKVCFEKAL--- 165
Query: 473 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 532
E + E + L +
Sbjct: 166 ---------------------------------EKKPKNPEFTSGLAIASYRL----DNW 188
Query: 533 HDTVAASVLYRLILFKYQDYVDAY----LRLAAIAKARNNLQLSIELVNEALKVNGKYPN 588
+ A R + D L+L + + +LV EAL+ +
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 589 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 648
L + D+ KA E + A + ++Y +G Y A + +
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGC-CYRAKVFQVMNLRENGM 306
Query: 649 THLEKAKELYT-------RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 701
K EL + + + + + A Q++ ++ F +
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366
Query: 702 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR---KFYYNT---------------- 742
V Q+ + + A+ + ++ K
Sbjct: 367 PVAKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425
Query: 743 ---DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778
D++ L LA E+ Q + R +
Sbjct: 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 524 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 583
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 584 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 627
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 628 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 687
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 688 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 743
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-28
Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 62/401 (15%)
Query: 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80
P + S + ++ + +F K E +E + + +
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
+ + Y R EE N+ ++ + G
Sbjct: 198 YK----RSPESYDKADESFTKAARLFEE----QLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
K + A K +E V + + A + +R ++ ++ +AL++ +
Sbjct: 250 KNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-Y 307
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
G + L +A + F +A +LDPEN+ + LA + + N+ A
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK---FDDCETLFSEA 364
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+P A K D
Sbjct: 365 KRKFPEAPEV-------------------------------------PNFFAEILTDKND 387
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---------LGDFRSALTNFEKVLEI 371
++KA Y ++ E+ + Y G+ + K + +F A EK ++
Sbjct: 388 FDKALKQYDLAI-ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
P + + L + +Q I++A L ++A + +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-26
Identities = 50/415 (12%), Positives = 126/415 (30%), Gaps = 48/415 (11%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V+Y+ L + ++ + KA + + + G+ A
Sbjct: 40 VFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Query: 151 FK---IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--------- 198
+ + + ++ +L + + + + A
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 199 ---IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG------ 249
+ + + + + + + D E + L L ++ + A
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 250 ---IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
+ ++K ++ A++L + F + + A+ + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVN 271
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
SY +A + D + Y+ ++ +++ YY GQ+ L ++ A +F+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKAL-KLDS--NNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDT 425
K E+ P+N L + + + + + L +A + P + E+L +D
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 426 GAALDAFKTKAGEEVP--IEVLNNIGVI---------HFEKGEFESAHQSFKDAL 469
AL + A E + I + + F A + A
Sbjct: 389 DKALKQY-DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 56/376 (14%), Positives = 124/376 (32%), Gaps = 41/376 (10%)
Query: 69 PEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP 128
+ ++ + ER A+ G I+T E L+TQ + + P
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE---LSTQPAKERKDKQENLP 159
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------QACVEFNR--G 176
S + E + + EAD++ + L +A F +
Sbjct: 160 SV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV- 235
+ + L+ ++ ++ G+ ++ A + ++A++L P V + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISL-EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 236 -ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
AL + D + +A ++ + + F + + + A
Sbjct: 276 MALIMADRNDSTEY-----YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+ P Y LA + + ++ + + + P E ++
Sbjct: 331 KELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFP-EAPEVPNFFAEILTD 384
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---------LGQIEKAQELLRKAAKI 405
DF AL ++ +E+ + + + + +A LL KA+K+
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 406 DPRDAQAFIDLGELLI 421
DPR QA I L ++ +
Sbjct: 445 DPRSEQAKIGLAQMKL 460
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 73/506 (14%), Positives = 158/506 (31%), Gaps = 56/506 (11%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ + + + Y+ A YY ++ E+ + F Y L + +GD +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKEDPVF---YSNLSACYVSVGDLKKV 58
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELL 420
+ K LE+ PD + L LG+ A L + D DA L L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 421 ISSDTGAALDAFK-----------------TKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 463
+ F + ++ F + E
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 464 SFKDAL-GDGIWLTLLDSKTKTYVIDASASMLQF-KDMQLFHRFENDGNHV-ELPWNKVT 520
++ ++ D + L + K + F K +LF + N +L
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
L + +D + A + + + V++Y+ +A I RN+ ++AL
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 640
K++ + G + ++ +A + F A + D ++ + + L E
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC-----LAYRE 351
Query: 641 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 700
+ + + L++ + N +L +K FD + + E +
Sbjct: 352 NK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 701 GSVFVQMPDVWINLAHVY---------FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 751
++ +++ +A + NF A + + + Q + LA
Sbjct: 404 -----KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLA 456
Query: 752 RTHYEAEQWQDCKKSLLRAIHLAPSN 777
+ + E + + LA +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTM 482
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 63/466 (13%), Positives = 134/466 (28%), Gaps = 46/466 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G + + A+ + LE+ D L YV +G ++K E+ KA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP----IEVLNNIGVIHFEKGEFE 459
+ P ++ + A+ + IE + + + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127
Query: 460 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 519
A L+ +K + + S+ F F+ +
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA--SFFGIFKPELT--------- 176
Query: 520 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 579
N E ++ L + + KA + ++ NE
Sbjct: 177 --FANYDESNEA-----DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229
Query: 580 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 639
K+ K +L G + +D + A E + A + +SY Y A +
Sbjct: 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY--------IYMALIMA 281
Query: 640 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 699
++ + + + + ++N G + +D + F + +E
Sbjct: 282 DRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334
Query: 700 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 759
+ +I LA + + + F ++ RKF ++ + A +
Sbjct: 335 PEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKND 387
Query: 760 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 805
+ K AI L + + K + T T E
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 6e-22
Identities = 59/510 (11%), Positives = 138/510 (27%), Gaps = 103/510 (20%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
G + ++ ++ A +YYN A + +P + ++ G++++
Sbjct: 9 LKDKGNQFFRNKKYDD----AIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI--GLCRYKL 210
LE D LL +A G+++D++ +I + L + +
Sbjct: 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+L + A E + + M F I+
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT------SMASFFGIFKPELTF 177
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY-HSKGDYEKAGLYYM 329
NY + E E ++N SY S+ + +E+
Sbjct: 178 ANYDES----------NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++ + G + D A + +K +E++P + + I
Sbjct: 228 ---EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADR 283
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIG 449
+ KA K+D ++ + + G
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVY--------------------------------YHRG 311
Query: 450 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 509
++F ++ A + F A E D
Sbjct: 312 QMNFILQNYDQAGKDFDKAK------------------------------------ELDP 335
Query: 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 569
++ + + + + + K+ + + A I +N+
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETL-------FSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 570 QLSIELVNEALKVNGKYPNALSMLGDLELK 599
+++ + A+++ K + L K
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGK 418
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 7e-21
Identities = 72/624 (11%), Positives = 165/624 (26%), Gaps = 143/624 (22%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
KG + + A + LE D V + + G +E +AL+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVALAVMDLQANEAAG 249
+ P + L LG+ A +L D + L E
Sbjct: 68 LKPDYSKVL-LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML--------ERNL 118
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
++ M K++ F L+ + + T++A S++
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA----------SFF 168
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEK 367
+ + + +Y+++ + ++ ++ Y F L +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427
++ +L+ G A E ++KA ++ PR
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------------------- 269
Query: 428 ALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 487
+ + +I ++ + + F AL
Sbjct: 270 --------------VNSYIYMALIMADRNDSTEYYNYFDKAL------------------ 297
Query: 488 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 547
+ D N+ V ++ ++ + + A +
Sbjct: 298 ------------------KLDSNNSS-------VYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 607
+ + Y++LA +A N L +EA + + P + ++ +D+ KA
Sbjct: 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392
Query: 608 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 667
+ + A + KL+ ++ A
Sbjct: 393 KQYDLAI--------------------------ELENKLDGIYVGIA------------- 413
Query: 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727
L F + +L + + + I LA + Q + A
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDIDEA 468
Query: 728 MKMYQNCLRKFYYNTDAQILLYLA 751
+ +++ + + A
Sbjct: 469 ITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 1e-20
Identities = 74/499 (14%), Positives = 156/499 (31%), Gaps = 72/499 (14%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
AL + F +Y D++++Y AL++ + C +G L K +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEM 61
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------PYCAMAL 271
+AL+L P+ + L+ A +G+ K A A
Sbjct: 62 STKALELKPDYSKVLLRRAS----------ANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHG-------------------PTKSHSYYNLA 312
L + L E+ + A T S++ +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEKVLE 370
+ + +Y+++ + ++ ++ Y F L + +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAAL 429
+ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYY 290
Query: 430 DAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 487
+ F KA + V + G ++F ++ A + F A L Y+
Sbjct: 291 NYF-DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA------KELDPENIFPYIQ 343
Query: 488 DASA--SMLQFKD-MQLFHR-FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 543
A +F D LF E+P +L + + + Y
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ-------YD 396
Query: 544 LILFKYQDYVDAYLRLAAI---------AKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
L + Y+ +A + N + L+ +A K++ + A L
Sbjct: 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456
Query: 595 DLELKNDDWVKAKETFRAA 613
++L+ +D +A F +
Sbjct: 457 QMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 8/271 (2%)
Query: 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 576
L + + A Y L +D V Y L+A + +L+ +E+
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 577 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 636
+AL++ Y L + A S D D+ L A
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 637 LRNEKRAPKLEATHLEKAKEL--YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 694
+ K T EL + + + + +++ + +
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 695 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-----YYNTDAQILLY 749
EA + + A +F A ++++ L K A L +
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242
Query: 750 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 780
+ + + +AI L P +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 2e-26
Identities = 58/595 (9%), Positives = 142/595 (23%), Gaps = 52/595 (8%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+A + + A +++ D V A+ +
Sbjct: 211 LLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGK 270
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
L +A + P AI G + L + + +A L P+ V
Sbjct: 271 QALETVQRLLPVLCQAHGLTPDQVVAI-ASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
Query: 233 ALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
A+ + L+ + + + +A + P +A+ + +
Sbjct: 330 AIASHDGGKQALETVQRL-----LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 384
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
A +T P + + + + ++ + + +
Sbjct: 385 LCQAHGLT---PDQVVAIASNGG-KQALETVQRLLPVL---CQAHGLTPDQVVAIASHDG 437
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ L + L + + P + + L +++ +L +A + P
Sbjct: 438 GKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQV 497
Query: 411 QAFIDLGELLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 468
A + T L +A P + + + G + A
Sbjct: 498 VAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 557
Query: 469 LG-----DGIWLTLLDSKTK-TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 522
G + K V + Q L +V +
Sbjct: 558 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA---------------HGLTQVQVVAI 602
Query: 523 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582
+ + + + V A +A +Q + ++ +A +
Sbjct: 603 ASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL 662
Query: 583 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 642
A++ G + + + A T A+ +
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ-------------EQVVAIAS-NN 708
Query: 643 APKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697
K +++ + + + A G + Q
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 1e-23
Identities = 55/596 (9%), Positives = 138/596 (23%), Gaps = 54/596 (9%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+A + + A V++ V A+ +
Sbjct: 414 LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGK 473
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
L +A + P AI + L + + +A L P+ V
Sbjct: 474 QALETVQQLLPVLCQAHGLTPDQVVAIA-SNIGGKQALATVQRLLPVLCQAHGLTPDQVV 532
Query: 233 ALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
A+ + L+ + + + +A + P +A+ + +
Sbjct: 533 AIASNGGGKQALETVQRL-----LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
A +T + + + + ++ + +
Sbjct: 588 LCQAHGLT---QVQVVAIASNIGGKQALETVQRLLPVLC---QAHGLTPAQVVAIASHDG 641
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ L + L + + PD + + G L +++ +L +A +
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQV 701
Query: 411 QAFIDLGE-LLISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 467
A L +A P + + + G +
Sbjct: 702 VAIASNNGGKQALETVQRLLPVL-CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 760
Query: 468 ALG------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521
A G I + + V + Q L +V
Sbjct: 761 AHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQD---------------HGLTLAQVVA 805
Query: 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581
+ + + + + QD V A +A +Q + ++ +
Sbjct: 806 IASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHG 865
Query: 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641
+ A++ + + + T + A+ +
Sbjct: 866 LTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-------------LDQVVAIASNG 912
Query: 642 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697
LE +++ + + + A + Q
Sbjct: 913 GKQALET--VQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHG 966
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 6e-20
Identities = 77/702 (10%), Positives = 169/702 (24%), Gaps = 59/702 (8%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A V LG + +Q + + +++A + V Q A G V
Sbjct: 47 PAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAV 106
Query: 147 A-SSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ EA +++ + Q +D+ E LQ+ I G
Sbjct: 107 TYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI-AKRG 165
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEI 263
L L P V A+ + +A +++ + + +A +
Sbjct: 166 GVTAMEAVHASRNALTGAPLNLTPAQVVAIASNN----GGKQALETVQRLLPVLCQAHGL 221
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P +A+ + + A + P + + + + ++
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP---PDQVVAIASNIGGKQALETVQR 278
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + + G + L + L + + PD + +
Sbjct: 279 LLPVLC---QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP-- 441
L +++ +L +A + P A G + +T L +A P
Sbjct: 336 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
Query: 442 IEVLNNIGVIHFEKGEFESAHQSFKDALG------DGIWLTLLDSKTKTYVIDASASMLQ 495
+ + + G + A G I + V
Sbjct: 396 VVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPV--L 452
Query: 496 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 555
+ L V + L + + + A L D V A
Sbjct: 453 CQTHGL------TPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL-------TPDQVVA 499
Query: 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615
+A +Q + ++ +A + A++ G + + + A
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA-- 557
Query: 616 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675
L+ A+ K+A +++ + + + A
Sbjct: 558 --------HGLTPDQVVAIASNGGGKQA----LETVQRLLPVLCQAHGLTQVQVVAIASN 605
Query: 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735
+ Q + A + +
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTP-----AQVVAIASHDGGKQALETVQRLLPVLCQAH 660
Query: 736 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777
+ E Q L +A L
Sbjct: 661 G--LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 2e-15
Identities = 62/647 (9%), Positives = 137/647 (21%), Gaps = 109/647 (16%)
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205
+A+ A D Q E + + ++ + AL H G I
Sbjct: 38 RAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGH----GFTHAHIVA 93
Query: 206 CRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGI-RKGMEKMQRAFEI 263
LG +Q + PE E +V + A + E ++
Sbjct: 94 LSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQL 153
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ + H LT L +T P + + + + ++
Sbjct: 154 DTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT---PAQVVAIASNNGGKQALETVQR 210
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + + L + L + + PD + +
Sbjct: 211 LLPVL-CQAHGLT--PAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIE 443
L +++ +L +A + P A
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTPDQVVA------------------------------- 296
Query: 444 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 503
+ + G + A
Sbjct: 297 -IASHGGGKQALETVQRLLPVLCQAH---------------------------------- 321
Query: 504 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 563
L ++V + + + + + D V A
Sbjct: 322 ---------GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372
Query: 564 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 623
+A +Q + ++ +A + A++ G +A ET +
Sbjct: 373 QALETVQRLLPVLCQAHGLTPDQVVAIASNGG--------KQALETVQRLLPVLCQAHGL 424
Query: 624 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 683
+ A+ + K +++ + + + + A
Sbjct: 425 TP------DQVVAIASHDGG-KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALE 477
Query: 684 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 743
+ Q + + A + +
Sbjct: 478 TVQQLLPVLCQAHG-----LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG--LTPDQ 530
Query: 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+ E Q L +A L P G Q
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 577
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 4e-15
Identities = 34/310 (10%), Positives = 81/310 (26%), Gaps = 10/310 (3%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ V A+
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 697
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
E V A+ + QA E ++ + + +A + P +A+ +
Sbjct: 698 QEQVVAIASNNGG-KQALETV--QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 754
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
+ A +T P + + + + ++ ++ +
Sbjct: 755 LPVLCQAHGLT---PAQVVAIASNIGGKQALETVQRLLPVLC---QDHGLTLAQVVAIAS 808
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ L + L + + D + + L +++ +L + + P
Sbjct: 809 NIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTP 868
Query: 408 RDAQAFIDLG 417
A
Sbjct: 869 DQVVAIASNI 878
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 4e-13
Identities = 33/328 (10%), Positives = 87/328 (26%), Gaps = 21/328 (6%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ D V A+
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + AI + L + + +A L
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLT 731
Query: 228 PENVEALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P+ V A+ + L+ + + + +A + P +A+
Sbjct: 732 PDQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ + +T + + + + ++ + + +
Sbjct: 787 RLLPVLCQDHGLT---LAQVVAIASNIGGKQALETVQRLLPVL-CQAHGLT--QDQVVAI 840
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ L + L + + PD + + ++A E +++ +
Sbjct: 841 ASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNI-------GGKQALETVQRLLPV 893
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFK 433
+D +D + S+ AL+ +
Sbjct: 894 LCQDHGLTLDQVVAIASNGGKQALETVQ 921
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 5e-13
Identities = 41/353 (11%), Positives = 87/353 (24%), Gaps = 33/353 (9%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + G A V++ ++ V A+
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 228 PENVEAL-----------------------VALAVMDLQA-NEAAGIRKGMEKMQRAFEI 263
P V A+ L + + A G ++ +E +QR +
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKG 319
+ + L V P + + + +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
++ ++ + + G Q L + L + + PD +
Sbjct: 886 TVQRLLPVL---CQDHGLTLDQVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAI 941
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 432
+ L +++ +L + + P A G A L
Sbjct: 942 ASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRP 994
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-26
Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 66/375 (17%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQLLL 139
L+A + LG T ++ S+ +G+ L
Sbjct: 9 LSASAENVSSLGLGSGGG---------GTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 140 AKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRALQVHP 193
G+ + F+ ++A +++ L LG A F G Y+ +++++K L +
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY--FYLGDYNKAMQYHKHDLTLAK 117
Query: 194 SCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------NV-- 231
S A G +G +G+ +A +R L L + NV
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177
Query: 232 ---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHFFFTG 282
+ L + + + +E Q ++ A L N ++ G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 283 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS---VKEIN 336
+ + L + + + NL S+ G +E A +Y + E+
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 390
+ Y LG L +F +A+ + L I +LG+ + +G
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357
Query: 391 QIEKAQELLRKAAKI 405
E+A + + ++
Sbjct: 358 GHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 59/373 (15%), Positives = 111/373 (29%), Gaps = 92/373 (24%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ +G G + S + L + N G + F++ A+
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGS-GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 190 QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Q AI +G + LG KA Q + L
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------------- 114
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGP 302
+ ++ A + L N G+ E L + +
Sbjct: 115 ----------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-L 163
Query: 303 TKSHSYYNLARSYHSKGDY-----------------EKAGLYYMAS---VKEINKPHEFI 342
++ + YNL YH+KG + +A +Y + ++++
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
LG LGDF++A+ + ++ L I LG+ ++ LGQ E A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 397 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKG 456
E ++ + ++LGE + E + ++G +
Sbjct: 284 EHYKRTLAL-------AVELGE----------------REVE---AQSCYSLGNTYTLLH 317
Query: 457 EFESAHQSFKDAL 469
EF +A + L
Sbjct: 318 EFNTAIEYHNRHL 330
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 9e-14
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 21/190 (11%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGD 357
G S S S G + + + G+ GD
Sbjct: 4 GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 358 FRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKI-----DPR 408
R+ + F+ ++ ++ LG+ Y LG KA + + + D
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 409 D-AQAFIDLGELLIS-SDTGAALDAFK------TKAGEEVPI-EVLNNIGVIHFEKGEFE 459
A++ +LG L A + + G+ + L N+G ++ KG+
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183
Query: 460 SAHQSFKDAL 469
K
Sbjct: 184 GQRNPGKFGD 193
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 59/456 (12%), Positives = 121/456 (26%), Gaps = 123/456 (26%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 400
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 401 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFES 460
A + D + A + +G +F G++
Sbjct: 73 AAIQAGTEDLR------------TLSAIY----------------SQLGNAYFYLGDYNK 104
Query: 461 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 520
A Q K LTL ++ + +
Sbjct: 105 AMQYHKHD------LTL---------------------------AKSMNDRLGE----AK 127
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
NL L+ + A++ L + D + +A NL
Sbjct: 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGN-------VY 176
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGN----W-- 631
GK+ + + + +A E ++ + + + GN +
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR-ACGNLGNTYYL 235
Query: 632 --NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVS 688
++ AA+ + + L A+E R + SNL G GQF+ +
Sbjct: 236 LGDFQAAIEHHQER-------LRIAREFGDRAAERRANSNL------GNSHIFLGQFEDA 282
Query: 689 KDLFTQVQEAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFY 739
+ + + + ++ V++ + +L + Y F A++ + L ++
Sbjct: 283 AEHYKR-----TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337
Query: 740 YNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
A+ L H + K + + LA
Sbjct: 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 9e-26
Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 28/273 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR---QAF 220
A F Y++++E + + + P +C Y+L + A+ + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETY 63
Query: 221 QRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278
+ M + A +++ Q A + + ++F
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLA-----IQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ G L Q E + T T +Y L ++Y+ +Y KA ++ + E+
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKP- 173
Query: 339 HEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYV 387
Y + A +EK++E+ K + + Y
Sbjct: 174 -NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
KA + +DP + +A L L
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 44/304 (14%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
K E A + +NK + P + + + + A +
Sbjct: 6 EFRYADFLFKNNNYAE----AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 153 IVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
+ + +G+ S +++ Y+ A+ + IG Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG-QIGSYFYN 120
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
G A Q ++ ++ + + L + A + E+ P
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA-----DSSFVKVLELKPNI 175
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ + A + LA K YEK +
Sbjct: 176 YIGYLWRARANAAQDPD----------------------TKQGLA-----KPYYEKL-IE 207
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
A K E I + D A ++ +L + P N + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 388 QLGQ 391
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 18/210 (8%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAG 325
A+ F + A+ V N + Y A Y+ Y+ A
Sbjct: 5 VEFRYADFLFKNNNY-------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
++N + G++ +K G A+ ++ ++ + +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--I 442
+ G A + + K + D + F +LG+ + + A +F K E P
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV-KVLELKPNIY 176
Query: 443 EVLNNIGVIHFEKG---EFESAHQSFKDAL 469
+ + + A ++ +
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 38/286 (13%), Positives = 79/286 (27%), Gaps = 61/286 (21%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ---ELLRK 401
+ K ++ A+ F K+ ++ Y +L + + AQ E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 402 AAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEF 458
+ F G++L+ A+ ++ A + +++ IG + KG F
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ-AAVDRDTTRLDMYGQIGSYFYNKGNF 124
Query: 459 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 518
A Q + + +
Sbjct: 125 PLAIQYMEKQI------------------------------------RPTTTDPK----- 143
Query: 519 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL---QLSIEL 575
V + L + + V A + +L + YL A A++ L+
Sbjct: 144 --VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201
Query: 576 VNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
+ ++V + A + N D VKA ++
Sbjct: 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 37/282 (13%), Positives = 70/282 (24%), Gaps = 52/282 (18%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D+ A FK +E F ++ + R L Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA------KKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 93 -------------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVG 133
+ Y GKI K+ + A Q Y A D +
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQ 113
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G KG A + + + + Y + + + L++ P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 194 SCPGAIRLGIGLCRYKLGQLGK---ARQAFQRALQLDPEN--------VEALVALAVMDL 242
+ L K A+ +++ +++ +EA +A
Sbjct: 174 NIYIGY-LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ K + + P A++ L H
Sbjct: 233 INRD---KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 554 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 614 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 672
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 673 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 732
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 733 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 777
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 30/320 (9%), Positives = 61/320 (19%), Gaps = 61/320 (19%)
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 433
N + + +A E+ K + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 434 --TKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 489
G I +KG+ A Q ++ A+
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV-------------------- 101
Query: 490 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 549
+ D ++ + + + A +
Sbjct: 102 ----------------DRDTTRLD-------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138
Query: 550 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK---A 606
+ L + + L++ D K A
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA 198
Query: 607 KETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 664
K + A G L N + KA + ++
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------KVKADAAWKNILAL 250
Query: 665 HTSNLYAANGAGVVLAEKGQ 684
+N A +G + L
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 577
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 578 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 637
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 638 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 697
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 698 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 748
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 749 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 16/247 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++E Y +A ++H Y+ G+ A A++ E
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 233 A--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+++ + + + +++ E Y ++ + A+ +
Sbjct: 74 DYKVISKSFARIGNAYHK-----LGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKK 127
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E V P K+ + Y +K D+ A Y +K P E Y
Sbjct: 128 AEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-P-EDARGYSNRAA 181
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 411 QAFIDLG 417
Sbjct: 242 NGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 24/268 (8%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+G + ++A + E +D L +A E+ +G Y ++ A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQANEAAG 249
++ I ++G ++ ++ +++ A + L+ E
Sbjct: 67 QGREMRADYKV-ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE- 124
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKS 305
++K + + P A +F A+ P +
Sbjct: 125 ----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDW-------PNAVKAYTEMIKRAPEDA 173
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
Y N A + + +A ++ E + F+ Y Q+ + ++ SAL
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDP--NFVRAYIRKATAQIAVKEYASALETL 230
Query: 366 EKVLEIYPDNCE--TLKALGHIYVQLGQ 391
+ + + + + +Y + Q
Sbjct: 231 DAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 37/296 (12%), Positives = 88/296 (29%), Gaps = 50/296 (16%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + + ++ +++A +Y + E++K + + + G++ +
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITY---LNNRAAAEYEKGEYET 56
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A++ +E + K + + ++G L+K + + L
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116
Query: 421 ISSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 478
+ L + P E G +F K ++ +A +++ + +
Sbjct: 117 KLRNAEKELKKAE-AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--------- 166
Query: 479 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 538
+ N+ L L E I D
Sbjct: 167 ---------------------------KRAPEDARGYSNRAAALAKLMSFPEAIAD---- 195
Query: 539 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 594
+ K ++V AY+R A A ++E ++ A + + N S
Sbjct: 196 ---CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 39/269 (14%), Positives = 74/269 (27%), Gaps = 49/269 (18%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G YK Q +A + + +A +L ++ L A + + A
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAA----------AEYEKGEYETAIST 60
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A+ G Y +++S+ G+
Sbjct: 61 L---------------------------NDAVEQ---GREMRADYKVISKSFARIGNAYH 90
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+++ K + + KL + L E + P+ E + G
Sbjct: 91 KLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP- 441
Y A + + K P DA+ + + L A+ KA E+ P
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC-NKAIEKDPN 205
Query: 442 -IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ E+ SA ++ A
Sbjct: 206 FVRAYIRKATAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 50 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK----IET 101
+++G+ + +E+G E+ Y +G Y LG IE
Sbjct: 48 EYEKGEYETAISTLNDAVEQG--REMRADY----KVISKSFARIGNAYHKLGDLKKTIEY 101
Query: 102 KQREKEEH-----------FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
Q+ EH + + ++ + +G+ K + A A
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ +++ ++ +A + +++ +A++ P+ A IR +
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT--AQIA 219
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ + A + A D E A + L
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 26/269 (9%), Positives = 54/269 (20%), Gaps = 77/269 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G K F A+ ++ K E++ D L + G+ E A L A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464
+ I G
Sbjct: 67 QGREMRADY--------------------------------KVISKSFARIGNAYHKLGD 94
Query: 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524
K + K+ T +L
Sbjct: 95 LKKTI-------EYYQKSLTE------------------------------HRTADILTK 117
Query: 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584
L +++ + + + +++ +++ E +K
Sbjct: 118 LRNAEKELKK-------AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 585 KYPNALSMLGDLELKNDDWVKAKETFRAA 613
+ S K + +A A
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 554 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 614 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 673
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 733
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 734 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 788 MQKFSAS 794
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 443 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 502
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 503 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 562
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 563 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 616
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 617 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 676
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 677 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 736
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 737 KFYYNTDAQILLYLARTHYEAEQ 759
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-25
Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 23/290 (7%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + Q ++ + + + +++ ++ Q P A R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+GL + + + G A A A LDP+++ ALAV + AA + ++
Sbjct: 61 -LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRA 114
Query: 260 AFEIYPYCAMALNYLAN--------HFFFTGQHFLVEQLTETALAVTNH----GPTKSHS 307
P + + F + + P +
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +L Y+ +Y+ A +V+ +P + + LG + AL + +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVE--LRP-DDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
L+I P + + Y + Q + A + L +A + +
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 33/357 (9%), Positives = 79/357 (22%), Gaps = 76/357 (21%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+ L + A + + W G +
Sbjct: 25 MEEGLSMLKLANLA-----------EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------- 198
A A D ++ A N + +L + L P
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 199 ------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
+ + R AL+++P + + +L V +
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV----------LYN 183
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A A+ + P + + L
Sbjct: 184 LSNNYDSAAANL---------------------------RRAVELR---PDDAQLWNKLG 213
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ + ++A Y ++ +IN P ++ Y + + + A + + +
Sbjct: 214 ATLANGNRPQEALDAYNRAL-DIN-P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 373 PDNCETLKALG-----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF---IDLGELLI 421
++ + ++ + F L +L+
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSMLL 327
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-19
Identities = 59/297 (19%), Positives = 100/297 (33%), Gaps = 33/297 (11%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235
G + Y + GL KL L +A AF+ Q PE EA
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP-MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295
+L + NE + + A + P LA AL
Sbjct: 60 SLGLT-QAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAAL 109
Query: 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355
A YE+ G + + +I+ +
Sbjct: 110 A-----------SLRAWLLSQP--QYEQLGSVNLQADVDIDDLN-----VQSEDFFFAAP 151
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 416 LGELLI-SSDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
LG L + ALDA+ +A + P + V+ N+ V + +++ A + A+
Sbjct: 212 LGATLANGNRPQEALDAYN-RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 56/351 (15%), Positives = 106/351 (30%), Gaps = 46/351 (13%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G + Y E N P+ + G LKL + A FE V + P+ E
Sbjct: 1 GHMLQNNTDYP---FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE 438
++LG + + A L A +DP+D
Sbjct: 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV-------------------------- 91
Query: 439 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG-----DGIWLTLLDSKTKTYVIDASASM 493
+ V H + +A S + L + + L + ++ +
Sbjct: 92 ------HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145
Query: 494 LQFKDMQLFHRFENDGNH-VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 552
F + + +E+ N + +L L ++ +A+ R + D
Sbjct: 146 FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
Query: 553 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 612
+ +L A N Q +++ N AL +N Y + + + A +
Sbjct: 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265
Query: 613 A-----SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 658
A T ++ + W++F L N P L + E +
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 22/173 (12%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ--------YYNKAS 121
+D V AL V +T
Sbjct: 83 MLDPKDIAV-------HAALAVSHTNEHNAN----AALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
+ + A E + + LE + ++ + Y +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 182 LEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+RA+++ P +LG L + +A A+ RAL ++P V
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATL--ANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 40/301 (13%), Positives = 85/301 (28%), Gaps = 27/301 (8%)
Query: 506 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 565
N + E P + + LA L E A++ + + + +A+ L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAE-------AALAFEAVCQAAPEREEAWRSLGLTQAE 67
Query: 566 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 624
L+I +N A ++ K + L + A + RA + +
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 625 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 684
+ + + + + L + + ++ GV+
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 685 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KF 738
+D + + E +W L A+ Y L +
Sbjct: 188 YDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Query: 739 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 798
YN +A ++ Q+ K L+RAI++ T +A + +
Sbjct: 243 MYN--------MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294
Query: 799 T 799
Sbjct: 295 L 295
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 15/255 (5%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ V + + + A + +GL + G +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDA-YIQLGLGYLQRGNTEQAKVP 59
Query: 220 FQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
++AL++DP + +A ALAV + A E+ ++A A LN
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLA-----DEEYRKALASDSRNARVLNNYGGF 114
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ ++ Q A T + P +S + NL +A Y+ S+ +N+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKSL-RLNR 172
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+ + K ++ A ++ + N +L + + A
Sbjct: 173 --NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 398 LLRKAAKIDPRDAQA 412
+ ++ P +
Sbjct: 231 YGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-21
Identities = 47/298 (15%), Positives = 87/298 (29%), Gaps = 55/298 (18%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + H +++ ++ +K E Y LG L+ G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQN------PLKTDKGRDEARDAYIQLGLGYLQRGNTEQ 55
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A K LEI P + + AL ++ + + A E RKA D R+A+ + G L
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115
Query: 421 ISS-DTGAALDAFKTKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 475
A +A ++ V N+G++ + + A + F+ +L
Sbjct: 116 YEQKRYEEAYQRLL-EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL------ 168
Query: 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535
+ N V +A LL + +
Sbjct: 169 ------------------------------RLNRNQPS-------VALEMADLLYKEREY 191
Query: 536 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593
V A Y L + L +AK + + + ++
Sbjct: 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 19/237 (8%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q K + ++ G L +G EQA + LE D + A A V
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF 81
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYKLGQLGKARQAFQRALQ--LDPE 229
+ E Y++AL + G L + + +A Q A Q L PE
Sbjct: 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY--EQKRYEEAYQRLLEASQDTLYPE 139
Query: 230 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
L ++ LQ + A + E +++ + +A+ + ++ Q
Sbjct: 140 RSRVFENLGLVSLQMKKPA---QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ G + S R D + A Y + + ++P
Sbjct: 197 YYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--------LYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ L K D ++ + Y ++G EQ R+ LE ID AD
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE------IDPSSADA--- 73
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
AL V + + + LA + Y KA D G L +
Sbjct: 74 ----HAALAVVFQTEMEPK-----------LADEEYRKALASDSRNARVLNNYGGFLYEQ 118
Query: 142 GEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
E+A + + V + + + E+++++L+++ + P
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + YK + ARQ + Q +N +L+ + + +
Sbjct: 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA---SYGLQ 234
Query: 260 AFEIYPYCAMALNYLAN 276
+YP + A
Sbjct: 235 LKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 51/316 (16%), Positives = 93/316 (29%), Gaps = 87/316 (27%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464
IDP A A + V+ + E + A +
Sbjct: 66 IDPSSADAH--------------------------------AALAVVFQTEMEPKLADEE 93
Query: 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524
++ AL +D + VL N
Sbjct: 94 YRKAL------------------------------------ASDSRNAR-------VLNN 110
Query: 525 LARLLEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582
L + A Y + + L ++ + E ++L++
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 583 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 642
N P+ + DL K ++V A++ + + G + +L LG +
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLG-IRLAKVFEDRDT 227
Query: 643 APKLEATHLEKAKELY 658
A A++ + K LY
Sbjct: 228 A----ASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 550 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 609
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 610 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 669
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 670 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 728 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 523 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 582
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 583 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 641
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 642 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 701
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 702 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 748
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 1e-23
Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 47/281 (16%)
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +S +G+ G Y + E + +A++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
+ + +L +A + +AL+LD A + E +
Sbjct: 61 -INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----------VYVVKEMYKE 109
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
A +++ E AL G +Y L
Sbjct: 110 AKDMF---------------------------EKALRA---GMENGDLFYMLGTVLVKLE 139
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A Y +V E+N + G G AL+ F V E P + +
Sbjct: 140 QPKLALPYLQRAV-ELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
G Y EKA E+L KA I P A L
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 5e-19
Identities = 53/263 (20%), Positives = 87/263 (33%), Gaps = 49/263 (18%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMAL 271
+G + + L P + G K E +A E A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP- 59
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
Y N A S + E+A +Y +
Sbjct: 60 ------------------------------------YINFANLLSSVNELERALAFYDKA 83
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ E++ YYG G V + ++ A FEK L +N + LG + V+L Q
Sbjct: 84 L-ELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---AALDAFKTKAGEEVP--IEVLN 446
+ A L++A +++ D +A G L ++ G AL F E+ P +
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCL--ANEGMLDEALSQFA-AVTEQDPGHADAFY 197
Query: 447 NIGVIHFEKGEFESAHQSFKDAL 469
N GV + K E A + A+
Sbjct: 198 NAGVTYAYKENREKALEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y + + E E A +Y+KA +D + + G G + + K ++A F+
Sbjct: 60 YINFANLLSSVNELER----ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L A +N V + +L + +RA++++ + A R G+C G
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-RFQFGMCLANEGM 174
Query: 213 LGKARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
L +A F + DP + +A + + E A +E + +A +I P +A
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-----LEMLDKAIDIQPDHMLA 229
Query: 271 LNYLANHFFFTGQH 284
L+ H
Sbjct: 230 LHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 9e-14
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
+ G E A + + KA + + ++ LL + E+E+
Sbjct: 27 GQQMGRGSEFGDYEK-----------AAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A + + LE D A G V + Y ++ + +++AL+ +G
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIY 264
KL Q A QRA++L+ + EA + + + + A + + E
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA-----LSQFAAVTEQD 189
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
P A A + + ++ + A+ + P + + H +
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 55/263 (20%)
Query: 360 SALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
S+ + + P T + G EKA E KA + + DA +I+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 416 LGELLISSDTG---AALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALG 470
LL S AL + KA E G ++ K ++ A F+ AL
Sbjct: 63 FANLL--SSVNELERALAFYD-KALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL- 118
Query: 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 530
+ +L + TVL L +
Sbjct: 119 -----------------------------------RAGMENGDLFYMLGTVLVKLEQPKL 143
Query: 531 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 590
+ + + ++ +A + L ++ + + + +A
Sbjct: 144 ALPY-------LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 591 SMLGDLELKNDDWVKAKETFRAA 613
G ++ KA E A
Sbjct: 197 YNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 39/329 (11%), Positives = 74/329 (22%), Gaps = 92/329 (27%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ + + + G EKA E KA + + DA +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY-- 60
Query: 416 LGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 475
N + E E A + AL
Sbjct: 61 ------------------------------INFANLLSSVNELERALAFYDKAL------ 84
Query: 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535
E D + + V E
Sbjct: 85 ------------------------------ELDSSAATAYYGAGNVYVVKEMYKEAKDM- 113
Query: 536 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 595
+ L + D + L + +L++ + A+++N A G
Sbjct: 114 ------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167
Query: 596 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 655
+A F A + D + A + G ++ EKA
Sbjct: 168 CLANEGMLDEALSQFAAVT-EQDPGHADAFYNAGV-----TYAYKEN--------REKAL 213
Query: 656 ELYTRVIVQHTSNLYAANGAGVVLAEKGQ 684
E+ + I ++ A + ++
Sbjct: 214 EMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 569
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 570 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 629
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 630 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 689
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 690 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 736
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 630 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 689
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 690 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 743
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 744 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 57/341 (16%), Positives = 102/341 (29%), Gaps = 68/341 (19%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W+ + Q + V + + E + P + G ++ F + A+
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A + +G+ + + A A QR L+L P N++AL+ALAV + + A
Sbjct: 94 QDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
E ++ + P + T + + V
Sbjct: 153 -----CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE--------- 198
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
Y +A N GLG + G+F A+ F
Sbjct: 199 -----------LYLEAA--------HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
L + P++ LG + E+A E +A +I P ++
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR--------------- 284
Query: 429 LDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
N+G+ G + A +F AL
Sbjct: 285 -----------------YNLGISCINLGAYREAVSNFLTAL 308
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 56/395 (14%), Positives = 113/395 (28%), Gaps = 60/395 (15%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
A ++ + W + E+ + + + E + + +
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ G K+ + + A D + W G + A A +
Sbjct: 69 F-EEGLKRLKEGDLPV----TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYK-- 209
LE +N+ AL+ A N D+ E K ++ +P ++ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 210 ------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
L ++ + A + + ++ DLQ + + RA +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDP-------DLQTGLGV-LFHLSGEFNRAIDA 235
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ AL V P + L + + E+
Sbjct: 236 F---------------------------NAALTVR---PEDYSLWNRLGATLANGDRSEE 265
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A Y ++ EI +P FI Y LG + LG +R A++NF L + + +
Sbjct: 266 AVEAYTRAL-EI-QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 384 -----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+I+ L + + D
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 46/366 (12%), Positives = 103/366 (28%), Gaps = 43/366 (11%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
++ + + ++ + Y P + + G +LK GD +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYY---FHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-S 423
E + P + E + LG + + A L++ ++ P + +A + L + S
Sbjct: 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147
Query: 424 DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 481
A +A K ++ P ++ N + G
Sbjct: 148 HQQDACEALK-NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG----------- 195
Query: 482 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 541
V + G+ ++ + L L + A
Sbjct: 196 ----VKELYLEAAHQN-----------GDMID-----PDLQTGLGVLFHLSGEFNRAIDA 235
Query: 542 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601
+ L + + RL A + + ++E AL++ + + LG +
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295
Query: 602 DWVKAKETFRAA-----SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 656
+ +A F A + + +S W + P+L +
Sbjct: 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355
Query: 657 LYTRVI 662
+ R
Sbjct: 356 VLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 456 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 514
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 574
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 575 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 634
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 635 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 690
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 691 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 744
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 745 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 799
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 51/414 (12%), Positives = 95/414 (22%), Gaps = 88/414 (21%)
Query: 355 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 407 PRDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 463
+D + G + D + + A + P E +G+ E ++A
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFME-AAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 464 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 523
+ + L E N+++ L
Sbjct: 121 ALQRCL------------------------------------ELQPNNLK-------ALM 137
Query: 524 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 583
LA A + + + Y + S + V
Sbjct: 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197
Query: 584 GKYPNALSM------------LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 631
Y A LG L + ++ +A + F AA +D LG
Sbjct: 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPEDYSLWNRLGA- 255
Query: 632 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 691
L N R E+A E YTR + + + G+ G + +
Sbjct: 256 ----TLANGDR--------SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303
Query: 692 FTQV-------QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738
F + ++W L L L
Sbjct: 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-23
Identities = 56/323 (17%), Positives = 100/323 (30%), Gaps = 54/323 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRA 188
G+ L G+ S F+ ++ +++ L LG A F Y+ +LE++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY--FYLHDYAKALEYHHHD 69
Query: 189 LQVHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE-------------- 229
L + + A G +G LG +A QR L + E
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 230 ---------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYL 274
+ + + ++ ++ + + A L
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 275 ANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 332 ---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKAL 382
+++ Y LG L D+ A+ K L I +L
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 383 GHIYVQLGQIEKAQELLRKAAKI 405
G+ Y LG ++A K +I
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 4e-15
Identities = 51/320 (15%), Positives = 86/320 (26%), Gaps = 90/320 (28%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQA 219
L + G + F++ A+QV + AI +G + L KA +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-LSAIYSQLGNAYFYLHDYAKALEY 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
L L G + G A A L N
Sbjct: 66 HHHDLTL------------------ARTIGDQLGE-------------AKASGNLGNTLK 94
Query: 280 FTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335
G + L + + ++ + YNL YH+KG
Sbjct: 95 VLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTG---- 149
Query: 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQL 389
+ ++A+ +E+ L + LG+ + L
Sbjct: 150 -------------EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIG 449
G A + I + G+ KA E +N+G
Sbjct: 197 GNFRDAVIAHEQRLLI-------AKEFGD----------------KAAE---RRAYSNLG 230
Query: 450 VIHFEKGEFESAHQSFKDAL 469
+ GEFE+A + +K L
Sbjct: 231 NAYIFLGEFETASEYYKKTL 250
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 26/180 (14%), Positives = 48/180 (26%), Gaps = 33/180 (18%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNF 365
GD ++ A+V+ + + + Y LG L D+ AL
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 366 EKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
L + + LG+ LG ++A ++ L
Sbjct: 67 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH----------------L 110
Query: 420 LISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479
IS + + + L N+G ++ KG+ L
Sbjct: 111 DISRELNDKVGEARA----------LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-22
Identities = 58/393 (14%), Positives = 111/393 (28%), Gaps = 81/393 (20%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G+ L G+ S F+ ++ +++ F Y+ +LE++ L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 191 VHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------- 229
+ + A G +G LG +A QR L + E
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 230 -------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLAN 276
+ V + ++ ++ + + A L N
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN 195
Query: 277 HFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS-- 331
+ G E L + + +Y NL +Y G++E A YY +
Sbjct: 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255
Query: 332 -VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGH 384
+++ Y LG L D+ A+ K L I +LG+
Sbjct: 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315
Query: 385 IYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLISSDTGAALDAFKTKAGE 438
Y LG ++A K +I + A ++L
Sbjct: 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS--------------------- 354
Query: 439 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471
++ +G+ + S + +L
Sbjct: 355 ----DLQMVLGLSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-19
Identities = 58/350 (16%), Positives = 105/350 (30%), Gaps = 70/350 (20%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV---HPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
L + G + F++ A+QV AI +G + L KA +
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70
Query: 221 QRALQLDPE-NVEALVALAVMDL-QANEAAG-IRKGMEKMQRAFEIY------PYCAMAL 271
L L + A A +L + G + + QR +I A AL
Sbjct: 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPT--KSHSYY-------------------- 309
L N + G+ F + + +Y
Sbjct: 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF 190
Query: 310 -NLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
NL +++ G++ A + + + KE Y LG + LG+F +A +
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 366 EKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+K L + ++ +LG+ Y L EKA + K L
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH----------------L 294
Query: 420 LISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
I+ + + + ++G + G + A + L
Sbjct: 295 AIAQELNDRIGEGRA----------CWSLGNAYTALGNHDQAMHFAEKHL 334
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 44/246 (17%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 327 YY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 378 TLKALGHIYVQLGQI--------------------EKAQELLRKAAKID------PRDAQ 411
L LG++Y G+ + A + + + +
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 412 AFIDLGELLIS-SDTGAALDAFK------TKAGEEVPI-EVLNNIGVIHFEKGEFESAHQ 463
AF +LG + A+ A + + G++ +N+G + GEFE+A +
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 464 SFKDAL 469
+K L
Sbjct: 249 YYKKTL 254
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 18/153 (11%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFK------TKAGEEVPI-EVLN 446
+ D A+A +LG L + A+ + + ++V L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 447 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 479
N+G ++ KG+ L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGA 427
+C L G + G A ++ D + + LG D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 428 ALDAFK------TKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 469
AL+ G+++ + N+G G F+ A + L
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-21
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 62/265 (23%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ K + G+ QA S F+ + + D +Y +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YYWTNV 46
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ + + L K KA ++ LQ P NV+ L A A M + +
Sbjct: 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--- 103
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + ++ ++ A
Sbjct: 104 EKDALRMYEKILQLEADNLAA-------------------------------------NI 126
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L Y+ + EK L + + Y G +L + A + +KV+
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPT--KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 370 EIYPDNCETLKALGHIYVQLGQIEK 394
+P E K L I ++ +
Sbjct: 185 LRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 5e-21
Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 24/182 (13%)
Query: 308 YYNLARSYHSKGDYEKA----------------GLYYMASVKEINKPHEFIFPYYGLGQV 351
+ G +A Y+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---ATELALA 63
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
K ++ A ++++L+ P+N + L+A + V GQ + A + K +++ +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 412 AFIDLGELLISS--DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 467
A I LG + L+ K G+ +E A S +
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDY-KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182
Query: 468 AL 469
+
Sbjct: 183 VI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-18
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 19/213 (8%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV--YYT 94
D L + G+ V FRQ + ++ ++ Y N+ T
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
L K R ++ A +Y + + + ++ + +G+ + A ++ +
Sbjct: 59 ELALAYKKNRNYDK----AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 155 LEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213
L+ + DN+ A + + + LE + L A R GL + +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLSKLFTTRY 173
Query: 214 GKARQAFQRALQLDPENVEALVALAVMDLQANE 246
KAR + Q+ + P + EA L + E
Sbjct: 174 EKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 28/212 (13%)
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + GQ G+A F++ + L+ + E
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY---------------------YWTN 45
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ + LA + + + L P A +G
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRG 102
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD-FRSALTNFEKVLEIYPDNCET 378
+ A Y + ++ + + LG + + L K L
Sbjct: 103 QEKDALRMYEKIL-QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
G + + EKA+ L+K P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 5e-15
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175
Y+ + ++A +K +L+ +NV L A ++ R
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL-GKARQAFQRALQLDPENVEAL 234
G+ D+L Y++ LQ+ A + +G Y + K + + L + A
Sbjct: 102 GQEKDALRMYEKILQLEADNLAA-NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273
+ L K +Q+ +P
Sbjct: 161 YRDGLSKLFTTR---YEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 9e-12
Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 60/238 (25%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKA 436
+ + ++ GQ +A R+ ++ + + S
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS-------------- 50
Query: 437 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 496
E+ ++ + + + + ++ A+ +K+ L
Sbjct: 51 --EISSKLATELALAYKKNRNYDKAYLFYKELL--------------------------- 81
Query: 497 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 556
+ N+V+ L A + A +Y IL D + A
Sbjct: 82 ---------QKAPNNVD-------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125
Query: 557 LRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
+ L + +E + L K A G +L + KA+ + +
Sbjct: 126 IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 552 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 611
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 612 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 671
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 730
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 731 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 541 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 600
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 601 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 660
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 661 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 695
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 561
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 562 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 620
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 621 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 681 EKGQFD 686
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 657 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 716
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 717 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 775
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 776 SNYTLRFDAGVAMQK 790
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 16/253 (6%)
Query: 174 NRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ L ++ L + G+ LG AR F +AL + P+
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLL-YERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 230 NVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
E L + +AA E E+ P A ++ G+ L
Sbjct: 76 MPEVFNYLGIYLTQAGNFDAA-----YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
+ P L + + + + K + + +
Sbjct: 131 QDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG + + + + ET LG Y+ LG ++ A L + A +
Sbjct: 188 LGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 408 RDAQAFIDLGELL 420
+ L
Sbjct: 247 HNFVEHRYALLEL 259
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 8/275 (2%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L ++E Q + D +G L + G A + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L D G + + E + L++ P+ A L G+ Y G+
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGR 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
A+ Q DP + + L + + + +E + +++ + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
YL N ++ ++ S + + L + Y S GD + A + +V
Sbjct: 187 YLGN-ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
N H F+ + LG + L ++
Sbjct: 243 A--NNVHNFV-EHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 12/263 (4%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L + + + D + L + + + G + + + +AL + P
Sbjct: 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRK 252
P +G+ + G A +AF L+LDP A + +A+ ++ A
Sbjct: 76 MPEV-FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA---- 130
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
+ + ++ P +L + E L + + + L
Sbjct: 131 -QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ E+ + + + LG+ L LGD SA F+ +
Sbjct: 190 N-ISEQTLMERLKADATDNT-SLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 373 PDNCETLKALGHIYVQLGQIEKA 395
N + LGQ +
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 9/173 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ Y Y S G A + ++ I + + LG + G+F +A
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR--PDMPEVFNYLGIYLTQAGNFDAA 96
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
F+ VLE+ P G G+ + AQ+ L + DP D + L
Sbjct: 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156
Query: 422 SSDTGAALDAFKTKAGEEVPI-----EVLNNIGVIHFEKGEFESAHQSFKDAL 469
D A + K + V +G I E+ E D
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNT 208
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 8e-14
Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 12/217 (5%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317
A L + G L ALA+ P + L
Sbjct: 33 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQ 89
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
G+++ A + + + E++ P + + + G G + A + + P++
Sbjct: 90 AGNFDAAYEAFDSVL-ELD-P-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146
Query: 378 TLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434
L +L + + + L K+ K LG + +
Sbjct: 147 RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT- 205
Query: 435 KAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
E +G + G+ +SA FK A+
Sbjct: 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 48/321 (14%), Positives = 87/321 (27%), Gaps = 65/321 (20%)
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALD 430
+ + L Q + + +++L A D AQ + G L S A +
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 431 AFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 488
F +A P EV N +G+ + G F++A+++F L
Sbjct: 65 DFS-QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL------------------- 104
Query: 489 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 548
E D + N+ L+ R D
Sbjct: 105 -----------------ELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LLAFYQD 140
Query: 549 YQDYVDAYLRLAAIAKARNNLQLSIEL---VNEALKVNGKYPNALSMLGDLELKNDDWVK 605
+ L L + + Q L ++ K + LG++ + +
Sbjct: 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMER 199
Query: 606 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 665
K + S LG + L+ A L+ + +
Sbjct: 200 LKADATDN-TSLAEHLSETNFYLGK-----YYLSLGD--------LDSATALFKLAVANN 245
Query: 666 TSNLYAANGAGVVLAEKGQFD 686
N A + L+ GQ
Sbjct: 246 VHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 640
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 641 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 700
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 701 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 760
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 761 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 4e-20
Identities = 56/331 (16%), Positives = 107/331 (32%), Gaps = 67/331 (20%)
Query: 145 EQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
+ S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 258
+G + + Q A A +R L+L P+N AL+ALAV + A E ++
Sbjct: 103 Y-LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILR 156
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
P A + GP+ + S S
Sbjct: 157 DWLRYTPAYAHLVTPAEE-----------------GAGGAGLGPS-----KRILGSLLSD 194
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
+ + ++A+V ++ GLG + G++ A+ F L + P++
Sbjct: 195 SLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGE 438
LG Q E+A R+A ++ P ++
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR------------------------- 288
Query: 439 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
N+G+ G A + F +AL
Sbjct: 289 -------YNLGISCINLGAHREAVEHFLEAL 312
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 6e-19
Identities = 49/327 (14%), Positives = 101/327 (30%), Gaps = 36/327 (11%)
Query: 112 LATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
L + Y+K + + + + +G L +G++ A F+ ++ D ++ A
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ +R L++ P A + + + +A + + L+
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTA-LMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 228 PENVEALVALAVMDLQANEAAGIRKG------------MEKMQRAFEIYP--YCAMALNY 273
P + A R E A + P
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L F +G++ AL+V P + L + + E+A Y ++
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRAL- 278
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY------- 386
E+ P +I Y LG + LG R A+ +F + L + + G +
Sbjct: 279 ELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336
Query: 387 ----VQLGQIEKAQELLRKAAKIDPRD 409
LGQ + +
Sbjct: 337 RLALSMLGQSDAYGAADARDLSTLLTM 363
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 56/368 (15%), Positives = 104/368 (28%), Gaps = 71/368 (19%)
Query: 308 YYNLARSYHSKGDYEKAGL--YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
A ++ DY+ Y E P + G +L+ GD +A+ F
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425
E ++ P + E + LG + Q A LR+ ++ P + A
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA------------- 134
Query: 426 GAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485
L + V + A + +D L Y
Sbjct: 135 -------------------LMALAVSFTNESLQRQACEILRDWL-------RYTPA---Y 165
Query: 486 VIDASASMLQFKDMQLFHRFENDGNHVELP-WNKVTVLFNLARLLEQIHDTVAASVLYRL 544
+ + L G+ + + +V LF A + ++ V L
Sbjct: 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDPDVQCGL 223
Query: 545 -ILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 585
+LF + + +L A N + ++ AL++
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283
Query: 586 YPNALSMLGDLELKNDDWVKAKETFRAA----SDATDGKDSYATLSLGNWNYFA-ALRNE 640
Y + LG + +A E F A + + +S W+ AL
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343
Query: 641 KRAPKLEA 648
++ A
Sbjct: 344 GQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 506 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 565
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 566 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 624
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 625 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 682
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 683 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 736
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 737 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 3e-19
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 11/173 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ Y + S+ G Y +A + + + + LG +K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVY-DAD-A-FDVDVALHLGIAYVKTGAVDRG 61
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
E+ L PDN + LG YVQ+ + + A LL K A+ +P + LG L
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL- 120
Query: 422 SSDTG---AALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ G A+D+FK A P +V I + + G E A FK A
Sbjct: 121 -DNLGRFDEAIDSFK-IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 43/210 (20%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ K G+ +A ++ D +V+ + L + + R E
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI----------AYVKTGAVDRGTE 63
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ ++A P L +Y Y+
Sbjct: 64 LL-ERSLADA-----------------------------PDNVKVATVLGLTYVQVQKYD 93
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A + E N P + LG LG F A+ +F+ L + P+ + +A+
Sbjct: 94 LAVPLLIKVA-EAN-P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
Y Q+G+ E+A +KA ++D +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 14/187 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
VYY G K + A + D + + G + G V++ +
Sbjct: 9 VYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ L DNV +Y ++ + + +P RLG+ L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DN 122
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
LG+ +A +F+ AL L P + A+A + +E A + ++A E+
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-----LPHFKKANELDEGA 177
Query: 268 AMALNYL 274
++ L +
Sbjct: 178 SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 8e-10
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ KG G QA + V +AD +V L G E +R+L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEA 247
P LG+ ++ + A + + +P N L V +L +
Sbjct: 71 DAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
A ++ + A + P +A + G+H
Sbjct: 129 A-----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 19/232 (8%), Positives = 50/232 (21%), Gaps = 75/232 (32%)
Query: 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP 441
G + + G+ +A LL + D D
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVA---------------------------- 45
Query: 442 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 501
++G+ + + G + + + +L
Sbjct: 46 ----LHLGIAYVKTGAVDRGTELLERSL-------------------------------- 69
Query: 502 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 561
+ ++V++ + + + + + RL
Sbjct: 70 ----ADAPDNVKVATVLGLTYVQVQKYDLAVPL-------LIKVAEANPINFNVRFRLGV 118
Query: 562 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
+I+ AL + + + +A F+ A
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-19
Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 44/221 (19%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
I+ + + + +A + + AL+ DP+N A + A L+ N+ A E
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA-----QES 64
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
++A I P A N FL +L
Sbjct: 65 FRQALSIKPDSAEINNNYGW--------FLCGRL-------------------------- 90
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
++ Y+ ++ + P G K G F A ++ L P
Sbjct: 91 --NRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
K L + GQ+ A +K + LG
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 7/131 (5%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 405 IDPRDAQAFIDLGELLISS--DTGAALDAFKTKAGEEV----PIEVLNNIGVIHFEKGEF 458
I P A+ + G L ++ F KA + P N G+ ++G+F
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFD-KALADPTYPTPYIANLNKGICSAKQGQF 129
Query: 459 ESAHQSFKDAL 469
A K +L
Sbjct: 130 GLAEAYLKRSL 140
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA Y DY +A ++K P + + ++ L A +F +
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKS--DP-KNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 368 VLEIYPDNCETLKALGHI-YVQLGQIEKAQELLRKAAK--IDPRDAQAFIDLGELLISS- 423
L I PD+ E G +L + ++ KA P A ++ G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127
Query: 424 DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
G A K ++ P + G+ A FK
Sbjct: 128 QFGLAEAYLK-RSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 76 ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135
A+ + I L + Y AT A + D W+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYR-----------QATASIEDALKSDPKNELAWLVRA 49
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKRALQVH- 192
++ ++A +F+ L D+ G R ++S+ ++ +AL
Sbjct: 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPT 108
Query: 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251
P+ A L G+C K GQ G A +R+L P+ A LA + A + +
Sbjct: 109 YPTPYIA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LG 164
Query: 252 KGMEKMQRAFEIYPYCAMALNYLA 275
++ L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 26/219 (11%)
Query: 35 AEQAP--LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
AE+A ++ +A EY + Q +E+ + + D
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIED--ALKSDPKNELA-------WLVRAEI 51
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-GEVEQASSAF 151
Y YL + A + + +A I G L + ++ + F
Sbjct: 52 YQYLKVND-----------KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100
Query: 152 KIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
L A L + +G++ + + KR+L P P A + +
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF-KELARTKML 159
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
GQLG A F++ + L +A A
Sbjct: 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 607
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 608 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 667
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 668 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 725
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 726 LAMKMYQNCLRKFYYNTDAQILL 748
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 32/263 (12%), Positives = 61/263 (23%), Gaps = 79/263 (30%)
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E L Y++ +A + A K DP++ A+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW---------------- 45
Query: 430 DAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 489
I+ + A +SF+ AL
Sbjct: 46 ----------------LVRAEIYQYLKVNDKAQESFRQAL-------------------- 69
Query: 490 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLYR--LIL 546
+ E + N L +++ + + L
Sbjct: 70 ----------------SIKPDSAE-------INNNYGWFLCGRLNRPAESMAYFDKALAD 106
Query: 547 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 606
Y A L + + L+ + +L ++P A L ++ A
Sbjct: 107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166
Query: 607 KETFRAASDATDGKDSYATLSLG 629
F+ + L LG
Sbjct: 167 DYYFKKY-QSRVEVLQADDLLLG 188
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 46/332 (13%), Positives = 115/332 (34%), Gaps = 27/332 (8%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
++E ++ EE L Y R + ++ G+ + V + + +
Sbjct: 37 EVEQDIQQMEEDQDLLIYYSLMCFRHQLM--LDYLEPGKTYGNRPTVTELLETIETPQKK 94
Query: 158 DRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----IGLCRYKL 210
+ L + EF++ Y +++ +Y+ A + P I + Y +
Sbjct: 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154
Query: 211 GQLGKARQAFQRALQLDPENV--EALVALAVMDLQAN--EAAGIRKGMEKMQRAFEIY-- 264
Q + +AL + + ++ + N + K + ++ A E+
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 265 ----PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSK 318
+ A++L +AN + +G + + + A V+ + L+ +
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 319 GDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYP 373
G +KA + + + +K ++ +F + + + + L+ FEK ++
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ ++ E+A RK K
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 21/236 (8%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV----TNHGPTKSHSYYN 310
EK A +A ++ Q + AL + + S +
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187
Query: 311 LARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+A +Y Y+KA + A+ +I + + GD + A+ +F+K
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247
Query: 368 VLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDLG 417
++ + + L L + GQ +KA + + + + F+ L
Sbjct: 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307
Query: 418 ELLISS----DTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ + L F+ K + + FE A ++ L
Sbjct: 308 AVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 28/253 (11%)
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
E + ME+ Q Y + ++ + +TE +
Sbjct: 36 AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95
Query: 305 SH-----SYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLG 356
+ S + + +Y +A YY + + ++ E ++ + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 357 DFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405
++ + + L+IY ++L + Y +KA L A ++
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 406 --DPRDAQAFIDLGELLIS-SDTGAALDAFK------TKAGEEVPIEVLNNIGVIHFEKG 456
D A + +++ D A++ F+ + ++ +VL + + G
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 457 EFESAHQSFKDAL 469
+ + A Q ++ L
Sbjct: 276 QTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 46/366 (12%), Positives = 91/366 (24%), Gaps = 79/366 (21%)
Query: 43 WLIIAREYFKQGKVEQFRQILEE--GSSPEIDEYYADVRYERIAILNALGVYYTYLG--- 97
+L + Y + V + + +E + +YY+ L G+Y
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS---------LFFRGMYEFDQKEYV 118
Query: 98 -------KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ E + + A ++ A + Q ++ + QA
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQALDI 170
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GAIRLGIGL 205
++ + +L A + Y +L + AL++ L I
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ G A + FQ+A ++ E +
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREK--------------------------------VPD 258
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-----HGPTKSHSYYNLARSYHSKGD 320
L L+ GQ Q E L + + +
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y+ ++ N V F A + KVL+ E +
Sbjct: 319 IHDLLSYF----EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ----EDIL 370
Query: 381 ALGHIY 386
+Y
Sbjct: 371 KGECLY 376
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 527 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 586
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 587 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 641
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 642 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 701
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 702 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 752
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 753 THYEAEQWQDCKKSLLRAIHLA 774
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 3e-18
Identities = 42/318 (13%), Positives = 88/318 (27%), Gaps = 38/318 (11%)
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPS 194
+ + E+E+ + VL + + AL+ + YS +A+++ P
Sbjct: 76 KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV------MDLQANEAA 248
A +G +K G + A F AL N +L L++ D +
Sbjct: 136 LVEA-WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSR 193
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ + + + A ++ + L N + +
Sbjct: 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP------------------- 234
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++A Y + K K + + + AL F +
Sbjct: 235 ----------KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
+ P E + + L ++ E K + + L D
Sbjct: 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQ 344
Query: 429 LDAFKTKAGEEVPIEVLN 446
+ + E P+ L
Sbjct: 345 SASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 25/190 (13%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ + ++ + DY ++ ++ + LG+V K GD SA
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSA 156
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKAAKIDPRDAQA 412
T F L + +L+ L + QL + + + A ++D D ++
Sbjct: 157 HTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 413 FIDLGELLISSDT---------GAALDAFKT--KAGEEVP--IEVLNNIGVIHFEKGEFE 459
+ LG +S AL A+ K + ++ N +H + +
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 460 SAHQSFKDAL 469
A + F A
Sbjct: 276 EALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 4e-12
Identities = 55/373 (14%), Positives = 116/373 (31%), Gaps = 35/373 (9%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
SH +++ + +G + MAS+ + + + L + +
Sbjct: 4 SHHHHHHSSGLVPRGSH-------MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDR 56
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--IS 422
+ Y + A ++EK + + + +AQA + G+ L
Sbjct: 57 LYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP 116
Query: 423 SDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGD--------- 471
+ A KA + P +E N +G ++++KG+ SAH F AL
Sbjct: 117 DYSPEAEVLLS-KAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN 175
Query: 472 -GIWLTLL-DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VTVLFN 524
+ L L + S+ Q K + D W +++ FN
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLSLYFN 229
Query: 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 584
+ + ++A + K D +L A + K + ++E ++A ++
Sbjct: 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289
Query: 585 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 644
+P L E+ + +L + R + +
Sbjct: 290 AWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQSASG 348
Query: 645 KLEATHLEKAKEL 657
+ L+ L
Sbjct: 349 QKMTLELKPLSTL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 8e-12
Identities = 49/325 (15%), Positives = 100/325 (30%), Gaps = 41/325 (12%)
Query: 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAIL 86
+ +L+ Q +D YF+ VE + ++ E+++ + E +
Sbjct: 42 EAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD-VQEEMEK--TLQQMEEVLGSA 98
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
GK + A +KA +++ W G++ KG+V
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPE---AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 147 ASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
A + F L ++ V L + + DS+ K A+Q+ +
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 199 -IRLGIGLCR------YKLGQLGKARQAFQRALQLD---PENVEALVALAVM--DLQANE 246
LG +A A+ +A ++D N + + A + ++
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
A +E +A + P L+E L+ + + G TK
Sbjct: 276 EA-----LEGFSQAAALDPAWPEPQQREQQ---------LLEFLSRLTSLLESKGKTKPK 321
Query: 307 SYYNLARSYHSKGDYEKAGLYYMAS 331
++ S Y ++
Sbjct: 322 KLQSMLGSLRPAHLGPCGDGRYQSA 346
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 542 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 600
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 601 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 659
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 660 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 711
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 712 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 748
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 632 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 688
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 689 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 743
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 744 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 778
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 89.5 bits (221), Expect = 3e-18
Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 7/205 (3%)
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
P A +LN LAN G +L AL V P + ++ NLA +G ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEA 62
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
++Y +++ P F Y +G ++ D + AL + + ++I P + L
Sbjct: 63 LMHYKEAIRI--SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVP-IE 443
I+ G I +A R A K+ P A+ +L L D K V
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 444 VLNNIGVIHFEKGEFESAHQSFKDA 468
N + +H F+ A
Sbjct: 180 EKNRLPSVHPHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L I+ +Q EE A + Y KA + + +L +G++++A +K
Sbjct: 12 LNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ A +L+ Y RA+Q++P+ A + G
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-NLASIHKDSGN 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
+ +A +++ AL+L P+ +A LA E+M++ I
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHC---LQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 273 YLANHFFFT 281
+ H +
Sbjct: 184 LPSVHPHHS 192
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 45/243 (18%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ +L A ++ +G +++ Y++AL+V P A + + G+L +A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-HSNLASVLQQQGKLQEALMH 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
++ A+++ P +A + K M+ +Q A + Y A+ +N
Sbjct: 66 YKEAIRISPTFADAYSNMGN----------TLKEMQDVQGALQCY-TRAIQIN------- 107
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
P + ++ NLA + G+ +A Y ++K KP
Sbjct: 108 ----------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP- 142
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399
+F Y L + D+ +K++ I D E L ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGF 201
Query: 400 RKA 402
RKA
Sbjct: 202 RKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 3e-13
Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 9/214 (4%)
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P + ++L LA + + I + + ++A E++P A A + LA+ G+
Sbjct: 4 SCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ A+ ++ PT + +Y N+ + D + A Y ++ +IN F +
Sbjct: 61 EALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QIN--PAFADAH 114
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + G+ A+ ++ L++ PD + L H + E ++K I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTKAGEE 439
+ S F+ E
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAER 208
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-12
Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 11/268 (4%)
Query: 80 YER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y + + + ++ L + +Q + +E A +Y +A RI + G L
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+V+ A + ++ + A A + + G +++ Y+ AL++ P P A
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ C + + ++ + + + +E +V + +
Sbjct: 148 -YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS----HGFR 202
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A H ++ +H +L +S
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGM 262
Query: 319 GDYEK-AGLYYMASVKEINKPHEFIFPY 345
+ +K Y S + +
Sbjct: 263 HNPDKFEVFCYALSPDDGTNFRVKVMAE 290
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-08
Identities = 60/454 (13%), Positives = 126/454 (27%), Gaps = 82/454 (18%)
Query: 551 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 610
+ D+ LA I + + N++ ++ L +AL+V ++ A S L
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--------------- 51
Query: 611 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 670
L+ + + L++A Y I +
Sbjct: 52 -------------------------VLQQQGK--------LQEALMHYKEAIRISPTFAD 78
Query: 671 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 730
A + G L E + +T+ + D NLA ++ GN A+
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIAS 133
Query: 731 YQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789
Y+ L+ D LA W D + + + + + V
Sbjct: 134 YRTALK---LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190
Query: 790 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 849
L R A R + ++ + K++ ++
Sbjct: 191 HSMLYPLSHGFRKAIAER-------HGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 850 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 909
H + + + E Y L + + ++
Sbjct: 244 SSDFGNHPTSHLMQS--------------IPGMHNPDKFEVFCYALSPDDGTNFRVKVMA 289
Query: 910 QEEHFQRVKEQWRSSTPASKRRERSENDD-DEVGHSEKRRRKGGKRRKKDKSSRSHYETE 968
+ HF + + + A + + + + G+++ R + R +
Sbjct: 290 EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPG 349
Query: 969 YAEADMMDYR---EEPEDEDASMNYREPIGQMND 999
+ A MDY +E + + Y E + M
Sbjct: 350 TSGALFMDYIITDQETSPAEVAEQYSEKLAYMPH 383
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 5e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 640
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 641 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 695
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 443 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 502
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 503 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 562
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 563 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 621
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 622 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 7e-18
Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 22/237 (9%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYN 310
E + A ++ +++ Q + A + +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 311 LARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
A ++ YE A ++ + + +P Y +G + + A+ F++
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 368 VLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDL 416
+ ++ P + + I+ +LG+I+KA E K D F L
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 417 GELLISSDT----GAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
L +S D ++K + ++ + E+ F+ A F
Sbjct: 310 KSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 45/345 (13%), Positives = 106/345 (30%), Gaps = 44/345 (12%)
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
+I+ + + EE L Y R ++ L + E + S +
Sbjct: 34 LRREIKQELDQMEEDQDLHLYYSLMEFRHNL----MLEYLEPLEKMRIEEQPRLSDLLLE 89
Query: 155 LEADRDNVPALL------GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----I 203
++ + + LL + E ++ Y +++F+K+A I +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
Y + Q + ++A ++ E + A +++ + A
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF-----ATNFLDLKQYEDAI 204
Query: 262 EIY-------------PYCAMALNYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKS 305
+ L + Q+ + A+A +N P+
Sbjct: 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264
Query: 306 HSYYNLARSYHSKGDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRS 360
+Y+ + + ++ G +KA Y+ MA ++ + + F + L +
Sbjct: 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
E +Y D + + Y + +KA K ++
Sbjct: 325 FFDFLES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 27/231 (11%)
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN---LARSYHSKGDYE 322
+ L YL + + T YY + +Y
Sbjct: 61 RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYL 120
Query: 323 KAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372
A ++ + + + E ++ + + + ++ + EIY
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLIS-SDT 425
+ ++ L Q E A +KA + + ++G S S
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 426 GAALDAFK-----TKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
A+ FK + +P + I IH++ G+ + AH+ +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 56/379 (14%), Positives = 118/379 (31%), Gaps = 62/379 (16%)
Query: 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA 88
+ + + + L L+ R +E ++ E P + + ++ ++ A L
Sbjct: 42 LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIE-EQPRLSDLLLEI-DKKQARLTG 99
Query: 89 LGVYYTYL--GKIETKQREKEEHFILATQYYNKASRIDMHEP-------------STWVG 133
L YY G E QRE A +++ KA + ++
Sbjct: 100 LLEYYFNFFRGMYELDQREYLS----AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY 155
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-- 191
Q + QA +K + + A + +Y D++ +++A +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215
Query: 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
P G IGLC+ Q A F+RA+ + E+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES------------------ 257
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPTKSHS 307
I P A + + G+ + +A + G S
Sbjct: 258 -------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +S + G E+A + ++ + + + + +F+ A F K
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 368 VLEIYPDNCETLKALGHIY 386
V ++ + ++ +Y
Sbjct: 365 VEQVR----QLIQGGVSLY 379
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 27/264 (10%)
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVN 583
L+Q+ + + Y L+ F++ ++ ++L L I+ L
Sbjct: 41 ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100
Query: 584 GKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNE 640
+Y G EL +++ A + F+ A + A + +
Sbjct: 101 LEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSESYYY 155
Query: 641 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 700
+ + +A E+Y + L + + Q++ + F +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS--- 212
Query: 701 GSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYL 750
+ N+ +Q + A+ ++ + F + Q +
Sbjct: 213 --MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 751 ARTHYEAEQWQDCKKSLLRAIHLA 774
+ HY+ + + + + +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 36/236 (15%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ GRY +L ++RAL+ +P P A + + KLG + A + + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEA-LYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 233 ALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291
+ L+ +A +G +++A +
Sbjct: 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVL--------------------------- 107
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351
+ A V P + + Y G+ +KA ++ + E L ++
Sbjct: 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPE---IRSALAEL 160
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L +G AL + K LE P + + + G+ E+A
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
L ++ G Y+ A + ++KE P + Y L + QLKLG AL N +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--NP-QDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 368 VLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDL 416
++ P L YV L G +E+A +L+ A +++PR A +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 417 GELLISSDTG---AALDAFKTKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
G + + G A + K +A E+ + + ++ G + A + AL
Sbjct: 125 GLVY--ALLGERDKAEASLK-QALALEDTPEIRSALAELYLSMGRLDEALAQYAKAL 178
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 23/178 (12%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----------G 356
Y LAR+ G A V P ++ Y L + + L G
Sbjct: 42 LYWLARTQLKLGLVNPALENGKTLV-ART-PR-YLGGYMVLSEAYVALYRQAEDRERGKG 98
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
AL+ + + P G +Y LG+ +KA+ L++A ++ + L
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSAL 157
Query: 417 GELLISSDTG---AALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
EL G AL + KA E+ P +++ KG+ E A ++
Sbjct: 158 AELY--LSMGRLDEALAQYA-KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
L Y L + + + + A A R++ + +G + GE ++
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ K L + D A + + GR ++L Y +AL+ P R+
Sbjct: 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL-RVRYASA 194
Query: 207 RYKLGQLGKARQAFQRALQLDP 228
G+ +A +A
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 31/211 (14%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LGV LG+ + A + +A + + +P + L G V
Sbjct: 9 LRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 147 ASSAFKIVLEADRDNVPAL--LGQA---------CVEFNRGRYSDSLEFYKRALQVHPSC 195
A K ++ + L +A E +G +L K A +V+P
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKG 253
L GL LG+ KA + ++AL L+ E ALA + + + A
Sbjct: 118 APL-HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA----- 170
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ + +A E P A+ G+
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKA 201
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 550 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 609
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 610 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 669
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 670 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 729
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 730 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 775
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A R + W+ L G+ A + L + A+ V
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ + R++++ ++A P PG +G GQ A A+ RA QL PE
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALW-LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
L + + + +++ A +L+
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
+ + + + + A L A E G + +R L +HP P A+
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA- 61
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+G R+ + +A Q+A PE+ + L D EAA R
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-----AAAYTR 116
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A ++ P L N ++ L+ A G + L+
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-12
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
D + L A+V+ +P + L +L +GD + ++ L ++P + E
Sbjct: 3 ADGPRELLQLRAAVRH--RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 433
+ LG + + +A LL++A+ P + LG L + AA A+
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 43/202 (21%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+ + A++ P++ A + LA +L + G +QR ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT---AGEMAVQRGLALHPGHPEA 59
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ L + +H L + A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDA--------------------------------- 86
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
P E LG G +A + + ++ P+ L + +L
Sbjct: 87 ------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 391 QIEKAQELLRKAAKIDPRDAQA 412
L + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 18/205 (8%), Positives = 39/205 (19%), Gaps = 75/205 (36%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--- 59
Query: 416 LGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 475
+ +G + + + A + A
Sbjct: 60 -----------------------------VARLGRVRWTQQRHAEAAVLLQQAS------ 84
Query: 476 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 535
+ H + L LE
Sbjct: 85 ------------------------------DAAPEHPG-------IALWLGHALEDAGQA 107
Query: 536 VAASVLYRLILFKYQDYVDAYLRLA 560
AA+ Y + +L
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLL 132
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 521 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 580
LA + DT A + + L + + +A RL + + + L+ +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 581 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
++P LG A + A
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%)
Query: 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 767
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 768 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 827
+A AP + + G A L+ + A A ++ +
Sbjct: 81 QQASDAAPEHPGIALWLGHA--------LEDAGQAEA----AAAAYTRAHQLLPEEPYIT 128
Query: 828 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 887
L+ ++ + AA A + AA Q A A +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188
Query: 888 EEQKKYLLEKRKLEDEQKRLR 908
+ L R + LR
Sbjct: 189 AASVRPLAPTRV--RSKGPLR 207
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 661
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 662 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 721
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 722 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 772
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 23/227 (10%), Positives = 46/227 (20%), Gaps = 75/227 (33%)
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIG 449
+ LR A + P+D A +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA--------------------------------WLMLA 30
Query: 450 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 509
G+ + + + L
Sbjct: 31 DAELGMGDTTAGEMAVQRGL------------------------------------ALHP 54
Query: 510 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 569
H E + L R+ A+VL + ++ L L +
Sbjct: 55 GHPE-------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107
Query: 570 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 616
+ + A ++ + P + L + + DW A
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 534 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 593
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 594 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 653
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 654 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 700
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ G G+ + A F+ + D + LG + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y +L+ Y + + P C +LG L A F A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 237 LA 238
A
Sbjct: 126 AA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y L + + G ++ A + A ++ + + GLG + LG + A
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARY-FLGLGACRQSLGLYEQA 71
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
L ++ + + ++QLG ++ A+ A +
Sbjct: 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-11
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y LG Q + G + A F+ + + + LG LG E+A + A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 405 IDPRDAQAFIDLGELLISS-DTGAALDAFKT 434
+D + + E + D A F +
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYS 111
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422
+ + D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 423 SDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
AL ++ + H + G+ + A F A
Sbjct: 66 GLYEQALQSYS-YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
++ D + L ++ G++ D+ + ++ + LG+G CR
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQS 64
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV 239
LG +A Q++ +D A
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAE 94
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
+ + L L + + G+ +++ + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQ 63
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G YE+A Y ++ + + L+LGD A + F +
Sbjct: 64 SLGLYEQALQSYSYGA-LMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 377 ETLKALGHIYVQLGQIEKAQE 397
L + ++
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 129
+ E + Y ALG GK + A + + +D ++
Sbjct: 12 GLSEDTLEQLY-------ALGFNQYQAGKWDD-----------AQKIFQALCMLDHYDAR 53
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
++G G + G EQA ++ D + A G + + A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 190 QVHPSCP 196
+ + P
Sbjct: 114 ALAAAQP 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 728 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 650 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 709
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 710 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 757
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 765
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 766 SLLRAIHLAPSNYTLRFDAGVAMQK 790
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 582 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 641
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 4e-15
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 24/164 (14%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + + PH I + +G + L + A F
Sbjct: 8 SLWNEGVLAADKKDWKGA----LDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGELLISSDT 425
+ + G +Y Q + + A + L++A + + LG
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Query: 426 GAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
EVL NI ++ +K E++ A + A
Sbjct: 122 -----------------EVLYNIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + +A + S+ +K Y+ G + + + A
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK--HLAVAYFQRGMLYYQTEKYDLA 90
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 151 KSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 77/241 (31%)
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ + +L+ + H I IG L + +A +AF R++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
A + + EK A + AL L +
Sbjct: 68 KHLAVAYFQRGM----------LYYQTEKYDLAIKDL---KEALIQLRGNQLI------- 107
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
DY+ GL + E+ Y
Sbjct: 108 --------------------------------DYKILGLQFKLFACEV---------LYN 126
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + K +++ A + + + +I+KA E + K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 408 R 408
Sbjct: 175 V 175
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 145
L GV + A ++ G + +
Sbjct: 9 LWNEGVLAADKKDWKG-----------ALDAFSAVQDPH---SRICFNIGCMYTILKNMT 54
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--IRLGI 203
+A AF + D+ A + + + +Y +++ K AL LG+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 204 -------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
K + KA + A + E + + A+ +
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 7e-15
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 35/173 (20%)
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
++ NL +++ G++ A + + KE Y LG + LG+F +A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 363 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
++K L + ++ +LG+ Y L EKA + K
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-------------- 115
Query: 417 GELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
L I+ + + GE ++G + G + A + L
Sbjct: 116 --LAIAQELKD-------RIGE---GRACWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 324
A L N + G E L + + +Y NL +Y G++E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 325 GLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDN 375
YY + +++ Y LG L D+ A+ K L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ Y LG ++A K +I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G Y LG A A ++ L + + + A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLL--------------IAKEFGDKAAE------------ 48
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKG 319
+A + L N + F G+ + + L + ++ S Y+L +Y
Sbjct: 49 -----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 320 DYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
DYEKA Y++ +E+ + LG LG+ A+ EK LEI
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 43/172 (25%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGIGLCRYKLGQLGKARQAF 220
LG + G + D++ +++ L + + +G LG+ A + +
Sbjct: 15 LGNTH--YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
++ L L R A + L N +
Sbjct: 73 KKTLLL------------------ARQLKDRAVE-------------AQSCYSLGNTYTL 101
Query: 281 TGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+ LA+ + + + ++L +Y + G++++A +
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG + LG A + + I E + G
Sbjct: 10 RAFGNLGNTHYLLGNFRD-----------AVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 138 LLAKGEVEQASS----AFKIVLEA-DRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQV 191
+ GE E AS + + DR Y +++++ + L +
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 192 ------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL 226
+G LG +A ++ L++
Sbjct: 119 AQELKDRIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 56/278 (20%), Positives = 90/278 (32%), Gaps = 55/278 (19%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++ K+AL+ HP A L + L + +A AL
Sbjct: 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 225 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 265
+ P L LAV + A E + +RA EI P
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKFHP 124
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 319
A LN LA G+ VE AL + + P + + NLA Y +G
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-PNVAKTKNNLASCYLKQG 183
Query: 320 DYEKAGLYYMASVKEINK-----PHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEI-- 371
Y+ A Y + ++ + P + + + R + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 372 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
P TL++LG +Y + G++E A L A++
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 37/197 (18%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFP-YYGLGQVQLKLGDFRS 360
S ++ A ++ E + H + L V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61
Query: 361 ALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------ 406
A L I P TL L +Y + G+ ++A+ L ++A +I
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 407 --PRDAQAFIDLGELLISSDTG----------AALDAFKTKAGEEVP--IEVLNNIGVIH 452
P A+ +L L + G AL+ + T+ G + P + NN+ +
Sbjct: 122 FHPDVAKQLNNLALLC--QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179
Query: 453 FEKGEFESAHQSFKDAL 469
++G+++ A +K+ L
Sbjct: 180 LKQGKYQDAETLYKEIL 196
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 1e-14
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESA 461
+DPR A+A+ +LG D A++ ++ KA E P E N+G ++++G+++ A
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ-KALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 462 HQSFKDAL 469
+ ++ AL
Sbjct: 123 IEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 3e-11
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRS 360
P + ++YNL +Y+ +GDY++A YY K + P +Y LG K GD+
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDP-RSAEAWYNLGNAYYKQGDYDE 87
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ ++K LE+ P + E LG+ Y + G ++A E +KA ++DP
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 1e-09
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LG Y G + A +YY KA +D W G +G+ ++
Sbjct: 5 YNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ LE D + A + +G Y +++E+Y++AL++ P A +G
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNA 112
Query: 207 RYKLGQLGKARQAFQRALQLDPEN 230
YK G +A + +Q+AL+LDP +
Sbjct: 113 YYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 4e-08
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G YK G +A + +Q+AL+LDP + EA L A E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----------AYYKQGDYDEAIE 56
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
Y + AL + P + ++YNL +Y+ +GDY+
Sbjct: 57 YY---------------------------QKALELD---PRSAEAWYNLGNAYYKQGDYD 86
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+A YY ++ E+ P +Y LG K GD+ A+ ++K LE+ P +
Sbjct: 87 EAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
I + + I KG +E+A F+ + D N
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
V ++G A + + ++ + + Y A + + + G C+ +L KA++ F+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECFE 128
Query: 222 RALQLDPENVEALVALAVMDL 242
+Q + + A + +D
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
Y+ A +++KG E+A +++ + + GL + F+ A +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDY-IMGLAAIYQIKEQFQQAADLYAV 95
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ ++ + G ++L KA+E + +
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-11
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 4/125 (3%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + D ++ + + I D + + + + + G+IE+A+ R D
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 408 RDAQAFIDLGELLISS-DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQS 464
+ + L + A D + A + + G A +
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYA-VAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC 126
Query: 465 FKDAL 469
F+ +
Sbjct: 127 FELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-11
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFK 433
+ D G+ + A + F+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV----TNHGPTKSHSYYNLA 312
++ I + A F+ G+ E A + LA
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRI-------EEAEVFFRFLCIYDFYNVDYIMGLA 77
Query: 313 RSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
Y K +++A LY +A N P + GQ QL+L A FE V++
Sbjct: 78 AIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 372 YPDNCETLKA 381
D +KA
Sbjct: 134 SNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 668 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 727
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 728 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 765
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 766 SLLRAIHLAPSNYTLRFDAGVA 787
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 2e-14
Identities = 28/249 (11%), Positives = 73/249 (29%), Gaps = 13/249 (5%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
F G Y + +R P + + + G + + ++
Sbjct: 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQ 66
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
A+ A + I +++ + + L A+ +F+ +
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQNP-------D 118
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
AL + G + + + A + +++ ++ +
Sbjct: 119 AALRTLHQGDSLEC-MAMTVQILLKLDRLDLA-RKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F+++ + L ++ G+ E A+ +L++A D +
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 413 FIDLGELLI 421
I+L L
Sbjct: 237 LINLVVLSQ 245
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 18/233 (7%)
Query: 135 GQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192
+ L + + + + D N LL A + F +L + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
KL +L AR+ ++ D + +A A + L A ++
Sbjct: 132 C------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQD 184
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
Q + + LN A G+ E + + AL + NL
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHPETLINLV 241
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
G + Y++ +K+ ++ H FI + + K DF + +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 14/244 (5%)
Query: 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD 77
A + + +I + L + A + + L+ S +D
Sbjct: 43 AYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 78 VRYERIAILNALGVYYTYLGKIETKQR-----------EKEEHFILATQYYNKASRIDMH 126
+I L + K + LA + K D
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 127 EPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184
T + + LA G +++ A F+ + + + L GQA +GR+ +
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244
+ AL P + + L ++ + + + + +
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PFIKEYRAKENDF 281
Query: 245 NEAA 248
+
Sbjct: 282 DRLV 285
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 10/167 (5%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ A S + + + + + + +AL
Sbjct: 67 AVRMFAEYLASHSRRDAI-VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + I ++L +++ A++ L+K D + + +++
Sbjct: 126 QGDSLECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 427 AALDAFK--TKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
DA+ + ++ + +LN H +G +E+A ++AL
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 38/267 (14%), Positives = 81/267 (30%), Gaps = 20/267 (7%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+G ++ + ++V P+ E L Y+ + + ++ + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL 65
Query: 411 QAFIDLGELLIS-SDTGAALDAFKTKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 466
QA E L S S A + + V L I+F ++A ++
Sbjct: 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 467 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 526
+ I L +L + D + +LA
Sbjct: 126 QGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDATLTQLAT--AWVSLA 176
Query: 527 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 586
E++ D A +++ + K + AA A+ + + ++ EAL + +
Sbjct: 177 AGGEKLQD---AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 587 PNALSMLGDLELKNDDWVKAKETFRAA 613
P L L L + + +
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 9e-04
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 27/240 (11%)
Query: 558 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDA 616
R + +A + +++E + A+ M + + R S +
Sbjct: 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 617 TDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHL-----------EKAKELYTR 660
D ++ L + N AALR + LE + + A++ +
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155
Query: 661 VIVQHTSNLYAANGAGVVLAEKGQ--FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 718
+ Q V G + +F ++ + S + + A +
Sbjct: 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAACH 210
Query: 719 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL-RAIHLAPSN 777
AQG + A + Q L K + + L+ L + + L + S+
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPET--LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-14
Identities = 59/278 (21%), Positives = 96/278 (34%), Gaps = 55/278 (19%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++GRY ++ K+AL+ HP A L + L + A AL
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 225 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 265
+ P L LAV + A E + +RA EI P
Sbjct: 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKDHP 150
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 319
A LN LA G++ VE + AL + + P + + NLA Y +G
Sbjct: 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD-PNVAKTKNNLASCYLKQG 209
Query: 320 DYEKAGLYYMASVKEINK-----PHEFIFP-YYGLGQVQLKLGDFRSALTNFEKVLEI-- 371
+++A Y + ++ + P + + + G + + E
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269
Query: 372 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
P TLK LG +Y + G+ E A+ L A +
Sbjct: 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 53/289 (18%), Positives = 85/289 (29%), Gaps = 65/289 (22%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ------------ACVEFNRGRYSDSL 182
++G E A K LE G A V ++ +Y D+
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLE----KTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 183 EFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQ-----LDP 228
AL + HP+ A L + + K G+ +A +RAL+ L
Sbjct: 90 NLLNDALAIREKTLGKDHPAV--AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147
Query: 229 ENVEALV-----ALAVMDL-QANEAAGIRKGMEKM-QRAFEIY--------PYCAMALNY 273
++ + AL + + E E QRA EIY P A N
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEV-------EYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 274 LANHFFFTGQHFLVEQLTETALAV-------TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
LA+ + G+ E L + L + K + + KG +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP-IWMHAEEREECKGKQKDGTS 259
Query: 327 YYMASVKE--INKPH-EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ LG + + G F +A T E +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 56/294 (19%), Positives = 91/294 (30%), Gaps = 63/294 (21%)
Query: 81 ERIAILNALGVYYTYLGKIET-----KQ----REK---EEHFILATQYYNKASRIDMHEP 128
R+ L+ L + Y G+ E KQ EK +H +AT A
Sbjct: 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL------- 77
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKR 187
+ + + A + A + + L D V A L A + RG+Y ++ KR
Sbjct: 78 -VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136
Query: 188 ALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQ-----LDPENVEA 233
AL++ HP A +L + L G+ + +QRAL+ L P++
Sbjct: 137 ALEIREKVLGKDHPDV--AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIY----------------PYCAMALNYLANH 277
N A K ++A +Y +
Sbjct: 195 AKTK-------NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247
Query: 278 FFFTGQHFLVEQLTETALAVTNHG---PTKSHSYYNLARSYHSKGDYEKAGLYY 328
G+ E PT + + NL Y +G +E A
Sbjct: 248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ S + +A L + A ++ + E + LG Q + A+
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA---WRSLGLTQAENEKDGLAIIALN 75
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ P + AL + A LR P+ Q
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-11
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFK 433
A L A +DP+D L + AAL + +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 7e-11
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
+ + +++ ++ Q P A +GL + + + G A A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIAL 74
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
A LDP+++ ALAV + A + ++ P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNAN---AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ +G +L + +A+ AF+ V + + + A + + ++ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P + + A + + L P+
Sbjct: 80 LDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 11/81 (13%), Positives = 20/81 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + + + W G + A A D ++ A
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 173 FNRGRYSDSLEFYKRALQVHP 193
N + +L + L P
Sbjct: 96 TNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
GL KL L +A AF+ Q +PE EA +L + + + + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARM 79
Query: 263 IYPYCAMALNYLANHFFFTGQH 284
+ P LA
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNA 101
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 711 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 770
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 771 IHLAPSNYTLRFDAGVA 787
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 736 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 775
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 574
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 575 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 613
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 24/181 (13%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
T S + + L Y +++A + A ++ + +G V+ G++
Sbjct: 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 359 RSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----D 406
+A F + E+ + + + G + A++ K+ D
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 407 PRD-AQAFIDLGELLISS-DTGAALDAFK------TKAGEEVPI-EVLNNIGVIHFEKGE 457
A AF LG+L + A + + + + E++ + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Query: 458 F 458
Sbjct: 203 H 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 49/230 (21%)
Query: 180 DSLEFYKRALQV-----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
++ ++ Q HP+ R +G + + +AR +FQ Q
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------- 55
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
+ +G AL+ + G +
Sbjct: 56 ----------AQKSGDHTAE-------------HRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 295 LAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYG 347
+ S + Y +A GD A Y S+ ++ + + G
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQ 391
LG + + + A ++ + +I+ E + L +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 41/224 (18%)
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-----HPSCPGAIR 200
A + +L A V R+ ++ ++ Q +
Sbjct: 10 LAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+G+ G AR+ F +L +
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEEREL------------------LASLPEDPLAA----- 106
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHS 317
+ +A G Q E +L + + ++ L
Sbjct: 107 -------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159
Query: 318 KGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + +A +++ + E+ L ++
Sbjct: 160 EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 34/156 (21%)
Query: 323 KAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------P 373
+A Y +A + P + LG V + F A +F+ + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 433
L +G + G + A+ + ++ L E A+
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEEREL-------LASLPE----DPLAASA---- 108
Query: 434 TKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ + G+ A Q ++ +L
Sbjct: 109 ----------NAYEVATVALHFGDLAGARQEYEKSL 134
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG Y ++ + + A + + E G +
Sbjct: 27 GARFMLGYVYAFMDRFDE-----------ARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 138 LLAKGEVEQASSAFKIVLEADR---DNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G + A F E ++ A V + G + + + Y+++L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 191 VH-----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
G+G + L +A+Q + RA +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 5e-13
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ I G E A F+ + D + LG
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
G+Y ++ Y + P C + G+L +A A +L
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP-FHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 230 NVEALVALA 238
E
Sbjct: 122 XPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-11
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + ++ E D + L A ++ G Y D+ ++ + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-L 59
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
G+G CR +GQ A ++ +D A LQ E + + + A
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116
Query: 262 EIYP 265
E+
Sbjct: 117 ELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 4e-11
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G G A + EI+ + + Y L Q + G + A F+ + + +
Sbjct: 1 GPLGSGGGTI-AMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFK 433
LG +GQ + A A +D + + E L+ + A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 9/138 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y+LA + + G YE A + A ++ H + GLG + +G + A
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLD--HYDSRFFLGLGACRQAMGQYDLA 74
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
+ ++ + +Q G++ +A+ L A ++ + +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV-- 132
Query: 422 SSDTGAALDAFKTKAGEE 439
+ L+A K K +
Sbjct: 133 ----SSMLEAIKLKKEMK 146
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 8e-07
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 32/114 (28%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
G S + EI D E L +L Q G E A + + +D D++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--- 57
Query: 416 LGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+G G+++ A S+
Sbjct: 58 -----------------------------FLGLGACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 651 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 710
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 711 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 770
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 771 IHLAPS 776
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + L+ +A ++ G E F+ + +D Y + A
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACR 65
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A+G Y LA Y+ + +D+ EP + LL GE+ +
Sbjct: 66 QAMGQYD------------------LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE 107
Query: 147 ASSAFKIVLEADRD 160
A S + E +
Sbjct: 108 AESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 765
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 766 SLLRAIHLAPSNYTLRFDAGVA 787
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 9e-13
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A +LG
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 2e-11
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 32/133 (24%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKG 456
E +KA ++DP +A+A+ N+G ++++G
Sbjct: 64 EYYQKALELDPNNAEAW--------------------------------YNLGNAYYKQG 91
Query: 457 EFESAHQSFKDAL 469
+++ A + ++ AL
Sbjct: 92 DYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-07
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 72 LDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 52/281 (18%)
Query: 176 GRYSDSLEFYKRA--------LQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQ 225
+ S++ E +A ++ P A + QL +A+ A+ + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
N A +A + K +++M A + +
Sbjct: 65 AHANNRSLFHAAKAF----EQAGMMLKDLQRMPEAVQYIEKAS----------------- 103
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFI 342
+ V N P + + A D KA Y A + + +
Sbjct: 104 --------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
++ ++ F A + +K +Y P + A + + AQ
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 397 ELLRKAAKI----DPRDAQAFIDLGELLISSDTGAALDAFK 433
+ +R++ I D A DL + D L +
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 36/188 (19%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
Y A ++ + E+A Y+ + G + L A+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 365 FEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
EK +Y +N L G + + + KA L ++A
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQA---------------- 141
Query: 419 LLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 478
F+ + E++ + + +F+ A S + +
Sbjct: 142 ----------AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191
Query: 479 DSKTKTYV 486
+ K +
Sbjct: 192 PTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 49/283 (17%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF-NRGRYSDSLEFYKRALQVH 192
+ +AK E +S K + D D+ + +A V F N + + + Y + + H
Sbjct: 9 EAHEHIAKAEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 193 PSCPGAIRLG-----IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-- 245
+ G+ L ++ +A Q ++A + EN A +D
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305
E + K + Q+A ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFEN-------------------------------EERLRQAA 155
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+R + +++A E+ VQL D+ +A
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 363 TNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRK 401
+ I ++C L+ L Y E+ + R
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 601
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 661
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 662 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 714
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 715 AHVYFAQGNFALAMKMYQNCL 735
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 403 AKIDPR--DAQAFIDLGELL 420
++ + +L +
Sbjct: 68 IEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-09
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + Y LA+ + + +A + V+ P +++ YY LG++ +L A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDA 60
Query: 362 LTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQ 396
+ + + +E+ + + L L ++ +E
Sbjct: 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
++ A S +L ++ ++ P G +G +L + A
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDT 63
Query: 220 FQRALQLDPENVEA 233
+ + +++ E
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-05
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
P++ T AL +++ +A L + + DP + LG+L
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY 51
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G +A YY ++ + + Y GLG LG++R A ++ +P++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ LG+ E+ ELL K D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 355 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 412 AFIDLGELL 420
+ +L
Sbjct: 63 LRVFYAMVL 71
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G + ++ +Y++A+ LG+G LG+ KA ++ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 234 LVALAV 239
V A+
Sbjct: 64 RVFYAM 69
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 113 ATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
A YY KA + ++G G GE +A + ++ ++ + A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPG 197
V +N GRY +E + +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ ++E A +Y ++ E+N P ++ + KLG++ A
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELN-PANAVY-FCNRAAAYSKLGNYAGA 65
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
+ + E+ + I P + +G L + +A +KA ++DP + +L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + N A +Y G+Y A ++ I+ + Y +G L A
Sbjct: 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP--AYSKAYGRMGLALSSLNKHVEA 99
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ ++K LE+ PDN L ++L +
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
S D E +G + E A + +E + N +A G Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+ +++ +RA+ + P+ A R+G L L + +A +++AL+LDP+N L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMG--LALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 238 AVMDLQANEA 247
+ +L+ EA
Sbjct: 121 KIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K E+F A +Y KA ++ + + G A + + D A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ ++ +++ +YK+AL++ P + + + KL +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETY-KSNLKIAELKLRE 129
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 405 IDPR--DAQAFIDLGELLISSDTGAALDAFK 433
D Q +L L AL+
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-09
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
E +L DN LG Y + Q + A LR A DP + A+ LG+ L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 421 ISS-DTGAALDAFK 433
D A A++
Sbjct: 64 QGQGDRAGARQAWE 77
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
++ + + +L DN+ ++ +L + AL P+ A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWL 59
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G G ARQA++ L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQAC 170
T+ G+ + + A + L+ D A LG+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 171 VEFNRGRYSDSLEFYKRALQVHPS 194
+G + + + ++ L S
Sbjct: 64 QG--QGDRAGARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
E + L R +G + Q A + AL DP A L
Sbjct: 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 7/124 (5%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ + L + + P N E LG Y+ + R+A ++ +A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 412 AFIDLGELLISS----DTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSF 465
+ L +L T KA I L + F + + A + +
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMID-KALALDSNEITALMLLASDAFMQANYAQAIELW 138
Query: 466 KDAL 469
+ +
Sbjct: 139 QKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q R + W G+ L + + + A++ L+ +N A V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 173 F---NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ ++ + + +AL + + A + + + +A + +Q+ + L+
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITA-LMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Query: 230 NVEALVALAVMDL 242
+ + +++
Sbjct: 148 RINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197
++ E A + + A+ N + YS+SL Y++ALQ+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA- 78
Query: 198 AIRLGIGLCRYKLGQ---LGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + Y + R +AL LD + AL+ LA
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 19/126 (15%), Positives = 35/126 (27%)
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E + P S + L Y + DY + L Y +++ + E
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ Q +K L + + L L +A EL +K ++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 407 PRDAQA 412
Sbjct: 146 SPRINR 151
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215
+A R ++ L+ + ++ +P L +G
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWAL-LGEYYLWQNDYSN 62
Query: 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ A+++ALQL EN E ALA + + + +A + AL LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 276 NHFFFTGQH 284
+ F +
Sbjct: 123 SDAFMQANY 131
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQAS 148
+ LG+ Q + + Y +A ++ + +L + Q
Sbjct: 46 QWALLGEYYLWQNDYSN----SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L D + + AL+ A F + Y+ ++E +++ + ++
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 6e-10
Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 56/344 (16%)
Query: 156 EADRDNVPALLGQ-----ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR----LGIGLC 206
E + + A V N G ++ K AL+ P R +G
Sbjct: 3 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN--EAAG-IRKGMEKMQRAFEI 263
+ G+L ++ Q+ Q+ ++ AL + Q+ A G ++ E ++AF++
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Query: 264 Y--------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH--SYYNLAR 313
P + A + + E + + V + + L +
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----GDFRSALTNFEKVL 369
++GD + A + +V++ GD +A
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242
Query: 370 EIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425
+ N + + + LG+ E A+ +L + + A++ + +L
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN----ARSLRLMSDL------ 292
Query: 426 GAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
L + ++++ G A + DAL
Sbjct: 293 ----------------NRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 51/308 (16%), Positives = 105/308 (34%), Gaps = 50/308 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRA 188
G++L KGE+ ++ + + + R + + +L+ Q+ + F +G + E ++A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 189 LQVH-----PSCPGAIRLGIGLCR--YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
Q+ P L + + +L +A + + +++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV--------------- 164
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
+ Q ++ + LA + L +L H
Sbjct: 165 ------------LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLLGNGKYHS 211
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRS 360
S++ + GD A + + K + F+ + + + Q+ LG+F
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQA 412
A E++ E D L L +Y Q G+ AQ +L A K+ R
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 331
Query: 413 FIDLGELL 420
F+ GE +
Sbjct: 332 FVIEGEAM 339
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 559 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 613
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 614 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 673
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 733
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 734 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 772
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 7e-10
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ E+ E+ T ++ Y G Y +A + Y V +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 339 HEF------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---G 383
+ + + L LKL ++ A+ +K L + N K L G
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRG 358
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + E A+ K +++P++ A
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K ++ A Y K E + +AS +F + A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYG----------LSEKESKASESFLL---------AAF 320
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y+ ++E +AL + + + R G + + + A+ F++ L
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG--EAQLLMNEFESAKGDFEKVL 378
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGM-EKM 257
+++P+N A + +++ +A E + + M
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-04
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y ++ Y + + G A L + +C KL + KA +
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 219 AFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+AL LD N + L A + + E+A ++ E+ P A ++
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESA-----KGDFEKVLEVNPQNKAARLQISM 393
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 9e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELL 420
E +KA ++DP +A+A +LG
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAK 87
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G Y +++E+Y++AL++ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 99/758 (13%), Positives = 200/758 (26%), Gaps = 289/758 (38%)
Query: 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA 84
D D+ D+ K+ I+++ E+ I+
Sbjct: 34 DCKDVQDMPKS---------ILSK--------EEIDHIIMSKD-----------AVSGTL 65
Query: 85 ILNALGVYYTYLGKIETKQREKEEHFI---LATQYYNKASRI--DMHEPSTWVGKGQLLL 139
L + +KQ E + F+ L Y S I + +PS ++
Sbjct: 66 RL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MM 108
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +EQ + + NV R + L ++AL +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVS-----------RLQPYLKL---RQALL-------EL 147
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
R + + GK + + ++ M+
Sbjct: 148 RPAKNVLIDGVLGSGKT----------------WVALDVCLSY------KVQCKMD---- 181
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
F+I+ +L E + E + Y + ++ S+
Sbjct: 182 -FKIF--------WLN-----LKNCNSPETVLEMLQKL----------LYQIDPNWTSRS 217
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
D+ ++L++ ++ L K + Y NC L
Sbjct: 218 DHSSN--------------------------IKLRIHSIQAELRRLLK-SKPYE-NC--L 247
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG--ELLISSDTGAALDAFKTKAG 437
L ++ + + AF +L LL + D
Sbjct: 248 LVLLNVQ-------------------NAKAWNAF-NLSCKILLTTRFKQVT-DFLSAATT 286
Query: 438 EEVPIEVLNNIGVIHFEKGEFES-----AHQSFKD------------------ALGDGI- 473
+ ++ + E +S +D ++ DG+
Sbjct: 287 THISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 474 ----WLTLLDSKTKTYVIDASASMLQFKDMQ-LFHR---FENDGNHVELP-------WNK 518
W + K T +I++S ++L+ + + +F R F +P W
Sbjct: 343 TWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFD 398
Query: 519 VTVLFNLARLLEQIHDTVAASVLYRLIL-----FKYQDYVDAYLRLAAIAKARNNLQLSI 573
V + V Y L+ YL L K N L
Sbjct: 399 VIK--------SDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELK--VKLENEYALHR 447
Query: 574 ELVN-----EALKVNGKYPNALSM---------LGDLELK-----------NDDWVKAKE 608
+V+ + + P L L ++E + +++ K
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK- 506
Query: 609 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI------ 662
R S A + S N L+ K ++ Y R++
Sbjct: 507 -IRHDSTAWNASGSIL-------NTLQQLKFYKP-------YICDNDPKYERLVNAILDF 551
Query: 663 -VQHTSNLYAANGAGVV---LAEKGQFDVSKDLFTQVQ 696
+ NL + ++ L + + + ++ QVQ
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 6e-06
Identities = 86/601 (14%), Positives = 156/601 (25%), Gaps = 203/601 (33%)
Query: 542 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 585
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 586 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 642
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 643 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 699
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 700 SGSVFVQMPDVWINLAHV--------------YFAQGNFA-------------------- 725
+F W+NL + Y N+
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 726 ---LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ----DCKKSLLRAIHLAPSNY 778
L K Y+NCL ++L A+ W C K LL
Sbjct: 235 RRLLKSKPYENCL----------LVL---LNVQNAKAWNAFNLSC-KILL---------- 270
Query: 779 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK 838
T R V S T + D T+ E + L D +
Sbjct: 271 TTR-FKQVT---DFLSAATTTHISLDHHSMTLTPDE-VKSLL-----LKYLDCRPQDLPR 320
Query: 839 INTHVEYCKHL-----LDAAKIHREAA--EREEQQNRQRQEAARQAALAEEARRKAEEQK 891
E + A I A + + N + +++L AE +K
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373
Query: 892 KY---------------LLEKRKLEDEQKRLRQQEEHFQR---VKEQWRSST---PASKR 930
+ LL + + + + V++Q + ST P+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 931 RERSENDDDEVGHS---EKRRRKGGKRRKKDKSSRS--------------H-YETEYAEA 972
+ + +++ H + + D H E+ E
Sbjct: 434 ELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 973 DMM------DYR---------EEPEDEDASM--------NYREPIGQMNDQDDDVEENAN 1009
+ D+R + S+ Y+ I D D E N
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVN 546
Query: 1010 D 1010
Sbjct: 547 A 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 82/301 (27%)
Query: 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAR--------EYFKQGKVEQFRQILEEG 66
+ LPR+ P L +I + +K ++ I+E
Sbjct: 311 LDCRPQDLPREVLTT--------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 67 SSPEI---DEYYADVRYERIAILNA--------LGVYYTYLGKIETKQREKEEHFILATQ 115
SS + EY ++R+++ L + + + K + + H +
Sbjct: 361 SSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---------------D 160
K S I + L K ++E + + +++ D
Sbjct: 419 KQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 161 N----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
+ F R + D F ++ ++ H S I L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLD-FRFLEQKIR-HDSTAWNASGSI---LNTL 524
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMD-LQANEAAGIR-KGMEKMQRAF-----EI 263
QL + DP+ E LV A++D L E I K + ++ A I
Sbjct: 525 QQLKFYKPYICDN---DPKY-ERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 264 Y 264
+
Sbjct: 580 F 580
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 2e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
YY + G+Y ++ + ++ +++ P E + G+ L + A+ +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-P-EESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 368 VLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V+ + D N + A + E E+ AK++
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182
+ P + +G L G ++ F+ ++ D + L + +N RY +++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 183 EFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+ Y + V + + + + +L+ +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 6e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 405 I--DPRDAQAFIDLGELL 420
+ D + + + L
Sbjct: 69 VIEDEYNKDVWAAKADAL 86
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P +S + ++ ++ YE+A Y + + + + +
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 362 LTNFEKVLEIYPDN 375
E ++ +
Sbjct: 96 AEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---A 427
+ N E G + G ++ +L KA ++DP +++ ++ G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEE 58
Query: 428 ALDAFKTKAGEEVP----IEVLNNIGVIHFEKGEFESAHQSFKDAL 469
A+D + + +V E + +
Sbjct: 59 AVDCYN-YVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP--------------YYGLGQVQLKLGDFRS 360
+ E+A Y ++ + F + + +KL +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 361 ALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A+ + VL N KAL G +LGQ++ A++ RKA K P D
Sbjct: 249 AIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
K++ KEE A Q Y A ++G + G+ + + A K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKNPC-- 232
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKA 216
L A RY +++ L P A+ R G + +LGQ+ A
Sbjct: 233 -------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG--KAKAELGQMDSA 283
Query: 217 RQAFQRALQLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
R F++A + P++ L + + + ++ + +
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 22/151 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
EK++ A + Y MA+ Y+ + F F + N+A
Sbjct: 193 EKLEEAMQQY---EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL----------NIAAC 239
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y++A + + V + + + G+ + +LG SA +F K + PD
Sbjct: 240 LIKLKRYDEA-IGHCNIVLTEEEKNPKA--LFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + L + E+ + L +K ++
Sbjct: 297 DKAIRRELRAL------AEQEKALYQKQKEM 321
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEF-----------IFPYYG-LGQVQLKLGDFRSAL 362
Y +G Y++A L Y V + F + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 363 TNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K LE+ +N K L G ++ + E A+ +K ++ P + A
Sbjct: 217 ESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KE + A Y K +E S E Q + A ++
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFS----------NEEAQKAQALRLAS---------H 199
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A +S ++E +AL++ + + R G + AR FQ+ L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG--EAHLAVNDFELARADFQKVL 257
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
QL P N A LA + A +K M
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y +L YK+ + A L + +C KL A +
Sbjct: 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217
Query: 219 AFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+ +AL+LD N + L A + + E A Q+ ++YP A LA
Sbjct: 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELA-----RADFQKVLQLYPNNKAAKTQLAV 272
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 12/236 (5%)
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ L + R KL + + N A+ + L +
Sbjct: 115 KTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLS--K 172
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
A + +I P+ L A+ + G + + +E + P
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF 232
Query: 305 SHSYYNLARSYHSKGDYE-------KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+++ A + A + ++ + + + Y L G
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+ +++ + LG +Y G +A + A + P +
Sbjct: 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 12/156 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL--------LAKG 142
+ + + ++ A++ + + K + L +
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 143 EVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
++ ++ ++ N +++ +A +G+ +S + + + S +
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
LG G +A A+ A L P
Sbjct: 316 LGKVY--EMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP-------------YYGLGQVQLKLGDFRSA 361
+ K + +A + Y ++ E+ L K D+ A
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107
Query: 362 LTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + KVL+I +N +KAL G + G +E+A+E L KAA ++P +
Sbjct: 108 IDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKAR 217
F + ++++ YK AL + L + C K KA
Sbjct: 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108
Query: 218 QAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ L++D NV+AL +A M E A E + +A + P N
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEA-----KENLYKAASLNPNNLDIRNSYE 163
Query: 276 N 276
Sbjct: 164 L 164
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K+ A Y +A +H + +I
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNIEISC---------N 91
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y +++ + L++ + A+ +LG + G L +A++ +A
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG--VANMYFGFLEEAKENLYKAA 149
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
L+P N++ + ++ + M
Sbjct: 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+N + + +L + + + D+EKA ++Y ++ E++ P F Y V +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELD-PSNITF-YNNKAAVYFEEKK 57
Query: 358 FRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
F + EK +E+ + K G+ + + + A + ++
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
P+ Y N A Y + + + + +V E+ + + G K
Sbjct: 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN 97
Query: 357 DFRSALTNFEKVLEIYPDNCETLKAL 382
D A+ F + L + D E +K +
Sbjct: 98 DLSLAVQWFHRSLSEFRDP-ELVKKV 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G + + E+A + +E D N+ +A V F ++++ ++F ++A++V
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
+L G K L A Q F R+L +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP---------------YYGLGQVQLKLGDFR 359
+ DY++A Y ++ ++ P Y + Q L +GD
Sbjct: 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH 80
Query: 360 SALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A +VL+ N KAL + ++++A+E L+ + P A
Sbjct: 81 EAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A Y A L + + +E DR N+P
Sbjct: 23 VQKDYKEAIDAYRDA----------------LTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
+ N G ++ E L+ + A+ R R +L +A + + L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA--KARIAAWKLDEAEEDLKLLL 124
Query: 225 QLDPENVEALVAL--AVMDLQANEAAGIRKGMEKM 257
+ P + V + +A + A R KM
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEK 367
YN+A G Y+ A +++ ++ + Y LG+ +F+ A F
Sbjct: 6 YNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64
Query: 368 VLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
++ YP + L LG G+ +AQ+ L++ A P A
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--------YYGLGQVQLKLGDF 358
+ Y L SY++ +++ A + V +P LG Q G
Sbjct: 41 ALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 359 RSALTNFEKVLEIYPDNCETLKA 381
A ++V YP + A
Sbjct: 93 TEAQQTLQQVATQYPGSDAARVA 115
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 37/324 (11%)
Query: 744 AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYTL--RFDAGVAMQKFSASTLQKT 799
I +L R Y + + ++ R + H A T R A + +QKF +
Sbjct: 776 KTIRGWLMRKKYM--RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ--RMYVV 831
Query: 800 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREA 859
R+ +R L+ +R + N + E K ++ + L HR
Sbjct: 832 RKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 860 AEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 916
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + ++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEYKS 946
Query: 917 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMD 976
+ E+ + +++ +R R + K + + E A+
Sbjct: 947 LLEKMN------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR--- 997
Query: 977 YREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRR 1036
+E + + E + + + + ++ E + RR
Sbjct: 998 -KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE-----------LNRR 1045
Query: 1037 RALSESDDDEPFERQLRDNTDELQ 1060
+ E E++L + T +L+
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLE 1069
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 852 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 902
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 903 EQKRLRQQEEHFQR 916
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 853 AKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEE 912
A+ R E E + + ++ R L ++ +E ++ + +K +E ++Q E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWN--QRQSE 129
Query: 913 HFQRVKEQWRSSTPASKRRERSENDDD 939
++ K R + + + D D
Sbjct: 130 QVEKNKINNR----IADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 865 QQNRQRQEAARQAALAEEARRK-AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 923
Q +R QE E+ RK EEQ+K RL++ + + ++++WR
Sbjct: 76 QADRLTQEP--------ESIRKWREEQRK-------------RLQELDAASKVMEQEWRE 114
Query: 924 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 968
+ + + ++ SE+ + R DK+ + +
Sbjct: 115 -------KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 22/188 (11%)
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL--------------- 112
+ + DV A+L ++ +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 113 --ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170
Y W + L+ + Q +L D N A +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 171 VEFNRGRYSDSLEFYKRALQVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQ 225
V + + L++ + L+ + L + Q ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 226 LDPENVEA 233
L P N A
Sbjct: 269 LVPHNESA 276
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 9e-04
Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 4/120 (3%)
Query: 302 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S + D + Y A ++E K ++ ++ + L D
Sbjct: 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ 184
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L +L N + + + + + + + K D R+ + ++
Sbjct: 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ ++GD E A ++ +P YY +G KLGD++ AL N++
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 368 VLEIYPDN 375
+E+ PD+
Sbjct: 61 AIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 412 AF 413
Sbjct: 71 LQ 72
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + N KGDY +A +Y ++ + N P + Y KL +F+ A
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRN-PKDAKL-YSNRAACYTKLLEFQLA 69
Query: 362 LTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
L + E+ +++ P +K + KA ++ +KA +D +A
Sbjct: 70 LKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 419 LL 420
+
Sbjct: 127 CM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174
+++ S ++ KG KG+ QA + ++ + + +A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 175 RGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +L+ + +Q+ P+ R + KA +Q+AL LD EA
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKA--AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 234 LVAL 237
Sbjct: 121 ADGY 124
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
GDY A Y ++ P + + LKL D+ A T K +E +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+KAL +LG++++A L++ ++P++
Sbjct: 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F G Y +L Y +AL + + + C KL KA +A++ D +
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 231 VEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
V+AL + QA E G + + + +QR + P + L N
Sbjct: 99 VKALYRRS----QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ L + K D++ A +Y + E++ P + V + GD+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTY-ITNQAAVYFEKGDYNKCRE 59
Query: 364 NFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
EK +E+ +N E + +G+ Y + + + A K+
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
PT N A Y KGDY K ++ E+ + + + Y +G K
Sbjct: 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEE 93
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ A+ + K L + + LK ++A+++L++ ++
Sbjct: 94 KYKDAIHFYNKSLAEHRTP-DVLKKC----------QQAEKILKEQERL 131
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
R IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 321 YEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y K Y S +G +LK+ D++ A+ + + LEI P
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Query: 375 NCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDA 410
N KAL + L + ++A L+KA +I P D
Sbjct: 306 NT---KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-06
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAI--RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F +G Y +++ Y + + P P + + KLG+ +A Q Q+ L+
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNK---AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 231 VEALV--ALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ L A A G ++ + ++ E Y
Sbjct: 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+S + + ++ +Y KA Y ++ I P I+ G A
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIY-LSNRAAAYSASGQHEKA 64
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ E + P + LG + + A+E K + +
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 304 KSHSYY-NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+ Y N A +Y + G +EKA + ++ ++ + LG + + D++ A
Sbjct: 43 ANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP--KYSKAWSRLGLARFDMADYKGAK 99
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+EK +E + + L ++ E + A+ D
Sbjct: 100 EAYEKGIEAEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDD 144
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+G +A+ E +A + L N L +A G++ + E + A V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 194 SCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
A RLG L R+ + A++A+++ ++ +
Sbjct: 77 KYSKAWSRLG--LARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 11/223 (4%)
Query: 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163
+ + A QY ++S++ KG + AK ++A++ ++ +
Sbjct: 47 GHHPDIWYEAAQYLEQSSKL-------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99
Query: 164 AL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
L A E +R +Y Y R L + P + + + + R F++
Sbjct: 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A + V A+M+ ++ + + + Y + ++
Sbjct: 160 AREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKA 324
+ L E L + P KS + ++ S GD
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 32/276 (11%), Positives = 67/276 (24%), Gaps = 59/276 (21%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ ++ ++ + +A +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293
A EA K A + F GQ
Sbjct: 74 DEAGNTY----VEAYKCFKSGGNSVNAVDSL-------ENAIQIFTHRGQF--------- 113
Query: 294 ALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYY---MASVKEINKPHEFIFPYYGLG 349
++ + L + DY KA Y + +
Sbjct: 114 --------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKA 402
++ G + A + K+++ N + G + A L++
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 403 AKIDP-----RDAQAFIDLGELLISSDTGAALDAFK 433
DP R++ L + + D+ + K
Sbjct: 226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 36/202 (17%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDN------CETLKALGHIY-VQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
E ++I+ LG I L KA + A
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA--------------- 144
Query: 418 ELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 477
+ + + + + G++ A + + + L
Sbjct: 145 -----------GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 478 LDSKTKTYVIDASASMLQFKDM 499
K Y + L D
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDA 215
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G+ + A Y ++K PH + Y K GD++ A + K +++ PD
Sbjct: 16 SVGNIDDALQCYSEAIK--LDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW- 71
Query: 377 ETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
K L + E+A+ + K + + Q L +
Sbjct: 72 --GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-------GRYSDSLEFYK 186
KG L+ G ++ A + ++ D N L NR G Y + E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYS------NRSAAYAKKGDYQKAYEDGC 62
Query: 187 RALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+ + + P R L + +A++ ++ L+ + N + L
Sbjct: 63 KTVDLKPDWGKGYSRKA--AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P Y N + +Y KGDY+KA +V ++ ++ Y L F A
Sbjct: 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP--DWGKGYSRKAAALEFLNRFEEA 91
Query: 362 LTNFEKVLEIYPDNCETLKAL 382
+E+ L+ +N + + L
Sbjct: 92 KRTYEEGLKHEANNPQLKEGL 112
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
KGDY A +Y +VK P I Y KL +F+ AL + + + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+K V + + KAQ A ++DP + +A
Sbjct: 81 -IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
+ + I+ KG KG+ A + ++ D +N +A +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+L+ +++ IR C + + KA++A++ ALQ+DP N EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKA--ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 837 KKINTHVEYCKHLLDAAKIHREAAERE------EQQNRQRQEAARQAALAEEARRKAEEQ 890
+ + ++ K A+ + E++ E+ Q + A AE +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 891 KKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 950
K + L + + R+ ++EE Q+++ + K +++ + ++++ E R+K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAE------KKKMQQQMLDLEEQLEEEEAARQK 973
Query: 951 GGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND 1010
+ +K + + + E D++ ++ E + EE
Sbjct: 974 ----LQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 1011 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 1070
L + + E+ + + R E + E + D +++ + ++ E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK-LEGESSDLHEQIAELQAQIAELK 1087
Query: 1071 HK 1072
+
Sbjct: 1088 AQ 1089
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 39/286 (13%), Positives = 98/286 (34%), Gaps = 31/286 (10%)
Query: 787 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 846
A + +K + + A +E L A KK+ +
Sbjct: 911 AEEMRVRLAAKKQEL-EEILHEMEARIEEEEERSQQLQAEK---------KKMQQQMLDL 960
Query: 847 KHLLDAAKIHREAAEREEQQ-NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK 905
+ L+ + R+ + E+ + + ++ + E+ K +++K L + ++ D
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL--EERVSDLTT 1018
Query: 906 RLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHY 965
L ++EE + + +K + + E+ E+ E R +K K R++ + +
Sbjct: 1019 NLAEEEEKAKNL----------TKLKNKHESMISEL---EVRLKKEEKSRQELEKIKRKL 1065
Query: 966 ETEYAEADMMDYREEPEDEDASMNYR---EPIGQMNDQDDDVEENANDRLAAAGLEDSDV 1022
E E ++ + + + E + + +D E + + E
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED-ETSQKNNALKKIRELESH 1124
Query: 1023 DDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRE 1068
++ + + + R +E + +L EL+D+
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRD-LSEELEALKTELEDTLDTTAT 1169
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
DYE A +Y ++ E+N P I+ Y L+ + AL + + +E+
Sbjct: 25 KAKDYENAIKFYSQAI-ELN-PSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ + LG+ A K+ P D A + E
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K+ + Y +K D+ A Y +K P + Y KL F A+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG-YSNRAAALAKLMSFPEAIA 59
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K +E P+ + + + A E L A D
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 6e-05
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 1/145 (0%)
Query: 836 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 895
++ + +E + +AA H +E + R ++ + AE+AR++ E + +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 896 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 955
+ + + E + E + E + E+ +K R
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET-EAELERVKKVREMELIYA 773
Query: 956 KKDKSSRSHYETEYAEADMMDYREE 980
+ + A + ++E
Sbjct: 774 RAQLELEVSKAQQLANVEAKKFKEM 798
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 10/239 (4%)
Query: 784 AGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA----ASNLHLHGFDEKKI 839
A V F ++ + R + + + + L + D + +
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSV 643
Query: 840 NTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRK 899
+ DA + + A +++ L +EAR + E QK +L++ +
Sbjct: 644 E---PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK--ILDQSE 698
Query: 900 LEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDK 959
E +K L + E V+ + A R E + + + K + + + +
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 960 SSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLE 1018
R E E + E E A + + + + LA AG E
Sbjct: 759 LERVKKVRE-MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 411
L+ G+ AL + + + + A ++ Q E AQELL +
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 412 AFIDLGELLISSDTGAALDAFKTK-AGEEVPIEVLNNIGVIHFEKGEFESA 461
+ I EL + L + + A E+ + V + + G E A
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 410 AQAFIDLGELL 420
L L+
Sbjct: 65 LPGASQLRHLV 75
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 21 VGRKYPEAAACYGRAITR--NPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 16 VGRKYPEAAACYGRAIT--RNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 3e-04
Identities = 35/366 (9%), Positives = 86/366 (23%), Gaps = 26/366 (7%)
Query: 47 AREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREK 106
++ +Q +V+ R++ + + ++R T I +
Sbjct: 201 VNKFEEQQRVQYIRKLYKT--LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQY 258
Query: 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166
L + N + + P T + L K + ++ L
Sbjct: 259 MNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE 318
Query: 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
+ R Y Y +A Q P K + + Q
Sbjct: 319 LSDDLHKARMTYV-----YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373
Query: 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
P + +L+ K+ C ++
Sbjct: 374 IPNSAVLAFSLSEQYELNT----------KIPEIETTILSCIDRIHLDLAALM------- 416
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E A+ ++ Y + + + + I+
Sbjct: 417 -EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + D ++A E L+ + + E + + + + + + L +
Sbjct: 476 AYIEYHIS-KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534
Query: 407 PRDAQA 412
Sbjct: 535 SDSHLL 540
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1082 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-25 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-24 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-19 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-19 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-12 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-09 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.002 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-09 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-04 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 5e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 7e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-05 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 3e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 8e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 2e-27
Identities = 65/435 (14%), Positives = 137/435 (31%), Gaps = 57/435 (13%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G + L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ +P EA L + + + + R + + L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ Y + + + +K I F
Sbjct: 121 VQAYV---------SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESA 461
+ P A +L + A+D ++ +A E P + N+ EKG A
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYR-RAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 462 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 521
+ AL
Sbjct: 291 EDCYNTALRL-------------------------------------------CPTHADS 307
Query: 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 581
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA++
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
Query: 582 VNGKYPNALSMLGDL 596
++ + +A S +G+
Sbjct: 368 ISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 2e-27
Identities = 63/389 (16%), Positives = 136/389 (34%), Gaps = 30/389 (7%)
Query: 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV 91
+ + E + L+++ +F+ ++++ + + + A+ + G
Sbjct: 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ R K + E + +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA------------------Y 124
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
L+ + D + GR ++ Y +A++ P+ A +G G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQG 183
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271
++ A F++A+ LDP ++A + L + +A + + RA + P A+
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALSLSPNHAVVH 240
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
LA ++ G L A+ + P +Y NLA + KG +A Y
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN-- 295
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ L ++ + G+ A+ + K LE++P+ L + Q G+
Sbjct: 296 -TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+++A ++A +I P A A+ ++G L
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (268), Expect = 2e-25
Identities = 61/368 (16%), Positives = 123/368 (33%), Gaps = 40/368 (10%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ E A + + DN LL + + F R S F A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 195 CPGA-IRLGIGL-----------------------------CRYKLGQLGKARQAFQRAL 224
A LG L G A Q +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + + + + + +A E P A+A + L F G+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+L E A+ + P +Y NL +++A Y+ + ++
Sbjct: 186 WLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNHAVV 239
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L V + G A+ + + +E+ P + L + + G + +A++ A +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTKAGEEVP--IEVLNNIGVIHFEKGEFESA 461
+ P A + +L + + A+ ++ KA E P +N+ + ++G+ + A
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYR-KALEVFPEFAAAHSNLASVLQQQGKLQEA 358
Query: 462 HQSFKDAL 469
+K+A+
Sbjct: 359 LMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (260), Expect = 2e-24
Identities = 66/409 (16%), Positives = 131/409 (32%), Gaps = 28/409 (6%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 467
A+A+ +LG + A P + I + +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 468 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 527
L ++ + + L+ E N NL
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS-------NLGC 177
Query: 528 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587
+ + A + + +++DAY+ L + K ++ AL ++ +
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 588 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 647
L + + A +T+R A + A +L N AL+ +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLAN-----ALKEKGS----- 286
Query: 648 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 707
+ +A++ Y + ++ + N + E+G + + L+ + E
Sbjct: 287 ---VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----- 338
Query: 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 756
NLA V QG A+ Y+ +R T A + T E
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.5 bits (223), Expect = 1e-19
Identities = 65/415 (15%), Positives = 141/415 (33%), Gaps = 34/415 (8%)
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTKAG 437
L H Q G E A+ + + +P + + L + + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST-LAI 60
Query: 438 EEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 495
++ P E +N+G ++ E+G+ + A + ++ AL + +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------FIDGYINLAAAL 111
Query: 496 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 555
+ + + ++ + V +L LL+ + A Y + ++ A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 556 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 615
+ L + A+ + L+I +A+ ++ + +A LG++ + + +A + A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 616 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 675
A + E ++ A + Y R I A
Sbjct: 232 --------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 735
L EKG ++D + + D NLA++ QGN A+++Y+ L
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 736 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+ A LA + + Q+ AI ++P+ + G +++
Sbjct: 333 EV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 26/156 (16%)
Query: 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY------- 93
+ +A Y++QG ++ + E+ ++ D L G
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 94 -------------TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
L I+ +Q EE A + Y KA + + +L
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+G++++A +K + A
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.2 bits (223), Expect = 3e-19
Identities = 39/292 (13%), Positives = 74/292 (25%), Gaps = 18/292 (6%)
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
S ++ ++A + + +LG L + +Q+ L D E +
Sbjct: 5 SAQYLRQAEVLKADMTDS-KLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 241 DLQANEAAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
A + +G K + A +L F QL + V N
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF------YTQLLQELCTVFN 114
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L + + +S LG +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQHC---LVHLGDIARYRNQTS 169
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A + + ++ P N + L + G ++ + A +L +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 420 LISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 471
L S + D KTK G I+ + E +
Sbjct: 230 L--SKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQ 279
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (156), Expect = 3e-11
Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 14/220 (6%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274
++ Q ++A L + ++ + A + + Q+ A+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ------DLYQKMLVTDLEYALDKKVE 57
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
+ + L A N ++ + + G Y +
Sbjct: 58 Q-DLWNHAFKNQITTLQGQAKNRANPNRSEVQANL-SLFLEAASGFYTQLLQELC---TV 112
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
N LG + K + + L LG I Q +
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQ 170
Query: 395 AQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 433
A+ R AA++ P + Q + L L S D + +
Sbjct: 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 2e-07
Identities = 35/333 (10%), Positives = 90/333 (27%), Gaps = 32/333 (9%)
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHF 453
++ + LR+A + + + E+ S A D ++ K L+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR--QALQDLYQ-KMLVTDLEYALDKKVEQDL 60
Query: 454 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 513
F++ + + + ++ V + L+ +
Sbjct: 61 WNHAFKNQITTLQGQ------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN 114
Query: 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 573
+ L + + T A + L IA+ RN +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAE 172
Query: 574 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 633
A ++ + L L D + + + +++ +
Sbjct: 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS------------IAVKF-PF 219
Query: 634 FAALRN-----EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 688
AA N K + + + + ++ ++Y + + +
Sbjct: 220 PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY--LSKSLEKLSPLREKLE 277
Query: 689 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 721
+ + + A S + V INL ++ +
Sbjct: 278 EQFKELLFQKAFNSQQLVHVTV-INLFQLHHLR 309
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ LG I KQ + + + V G + + + QA S ++
Sbjct: 123 SSQLGIISNKQTHTSA----IVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ N A + ++G + ++ +Y R++ V P A
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.5 bits (179), Expect = 2e-14
Identities = 31/260 (11%), Positives = 67/260 (25%), Gaps = 13/260 (5%)
Query: 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKAR 217
R+ + L + E + L F + L+V+P G L R +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
+ R L+ D N + QA + + + +Y +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCL 187
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ L ++ +++ +Y + +
Sbjct: 188 LPQLHPQ-------PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH---RWLLG 237
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
E +F + L + +++ T+ L L ++ +
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 398 LLRKAAKIDPRDAQAFIDLG 417
+DP A DL
Sbjct: 298 YFSTLKAVDPMRAAYLDDLR 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 19/316 (6%)
Query: 117 YNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Y+K + + + + +G L +G++ A F+ ++ D ++ A +
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +R L++ P A+ + +A + + L+ P
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAH 122
Query: 233 ALVALAV-----MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
+ + G E++ A+ L+ + ++
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF-LAAVRLDPTSIDPDVQCGLGVL 181
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 343
L+ + N ++ G G +V + E +I
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----HIYVQLGQIEKAQELL 399
Y LG + LG R A+ +F + L + + G +I+ L
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 400 RKAAKIDPRDAQAFID 415
D RD +
Sbjct: 302 DAYGAADARDLSTLLT 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 44/262 (16%), Positives = 81/262 (30%), Gaps = 50/262 (19%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
GL R + G L A F+ A+Q DP+++EA L + + + ++R E+
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ---ELLAISALRRCLEL 82
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP------------TKSHSYYNL 311
P AL LA F ++ L T +
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF------------- 358
S S + + ++A+V ++ GLG + G++
Sbjct: 143 LGSLLSDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 359 ---------------------RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
A+ + + LE+ P + LG + LG +A E
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 398 LLRKAAKIDPRDAQAFIDLGEL 419
+A + + + G +
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 1e-09
Identities = 42/287 (14%), Positives = 80/287 (27%), Gaps = 16/287 (5%)
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y+K + E P + G +L+ GD +A+ FE ++ P + E
Sbjct: 3 TYDKGYQF------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 56
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEE 439
+ LG + Q A LR+ ++ P + A + L +
Sbjct: 57 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116
Query: 440 VP----------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 489
P + F + + LD + +
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
Query: 490 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 549
+L + + + + N + L L + + A YR L
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236
Query: 550 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 596
Y+ + L + ++E EAL + K G +
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 574
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 575 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 633
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 634 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 691
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 692 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 751
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 752 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.4 bits (151), Expect = 4e-11
Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 3/124 (2%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 409 DAQAFIDLGELLISS-DTGAALDAFKTKAGEEVPIEV--LNNIGVIHFEKGEFESAHQSF 465
L L+ ++ T E+ + ++E +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 466 KDAL 469
Sbjct: 123 LQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/130 (11%), Positives = 36/130 (27%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + +A + + S +LL G+ E+A ++ + +P +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
D + A + + L + + + +L E
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 233 ALVALAVMDL 242
+ D+
Sbjct: 135 LANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ L++G+++QA ++A + + G + + E +++++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L + + A+ A + + E + + + + + + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS--- 119
Query: 255 EKMQRAFEIYPYCAMALNYLA 275
E + E+ N +
Sbjct: 120 ELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 45.8 bits (108), Expect = 1e-05
Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 7/137 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + GD+E+A M S+K P ++ L + +
Sbjct: 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-YLPGASQLRHLVKAAQARKDF 83
Query: 362 LTNFEKVLEI-YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-EL 419
+ + ++ + E+ EL + ++ D
Sbjct: 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 143
Query: 420 LISSD--TGAALDAFKT 434
+ D G ++ F T
Sbjct: 144 VRDIDDRLGGYIELFST 160
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.7 bits (100), Expect = 1e-04
Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 4/131 (3%)
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
++ S+G ++A + ++K P + ++ GDF A + +++
Sbjct: 3 WKNALSEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALD 430
+P+ L H+ + + A + + + L + S +
Sbjct: 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119
Query: 431 AFKTKAGEEVP 441
+ E
Sbjct: 120 ELALQIEELRQ 130
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 2e-04
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 646 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 705
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 706 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 765
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 766 SLLRAIHLAPSNYTLRFDAGVA 787
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.4 bits (94), Expect = 6e-04
Identities = 10/138 (7%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+++ +E + A + P A + G ++ ++ + P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGAS 68
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L + + + + + D+ ++
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTK--SLVSFNLSMVSQDYEQVSELALQIE 126
Query: 370 EIYPDNCETLKALGHIYV 387
E+ + V
Sbjct: 127 ELRQEKGFLANDTSFSDV 144
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 61.5 bits (147), Expect = 2e-10
Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 33/321 (10%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 188
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 189 LQVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--------ENVEALV 235
Q+ + + G L A + ++A QL + +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE------Q 289
A + Y + L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGL 348
L H S++ + GD A + + K E H + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 403 AKIDPR--DAQAFIDLGELLI 421
K+ R F+ GE +
Sbjct: 318 LKLANRTGFISHFVIEGEAMA 338
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 21/285 (7%)
Query: 515 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 568
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 569 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 620
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 621 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 681 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 740
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 741 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781
+ LL L + +++A + D ++ LL A+ LA +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 7/210 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ LG AR F +AL + P+ E L + QA E E
Sbjct: 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLE 99
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ P A ++ G+ L + P L + + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ K + + + LG + + + + ET L
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYL 215
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
G Y+ LG ++ A L + A + +
Sbjct: 216 GKYYLSLGDLDSATALFKLAVANNVHNFVE 245
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 8/249 (3%)
Query: 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + D + L + + + G + + + +AL + P P
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY- 76
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G+ + G A +AF L+LDP L A + Q
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNY-------AHLNRGIALYYGGRDKLAQDDLL 129
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + + + Q +Q E + + + + +
Sbjct: 130 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 189
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + LG+ L LGD SA F+ + N +
Sbjct: 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
Query: 383 GHIYVQLGQ 391
LGQ
Sbjct: 250 LLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 33/246 (13%), Positives = 62/246 (25%), Gaps = 17/246 (6%)
Query: 361 ALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
L E++L + + L G +Y LG A+ +A I P + F L
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 417 GELLISSDTGAALDAFKTKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 474
G L + A E N G+ + G + A
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---- 133
Query: 475 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 534
D + + + + Q + + ++ + +
Sbjct: 134 ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL 190
Query: 535 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----YPNAL 590
+ + L + +L + L A+ N + AL
Sbjct: 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 250
Query: 591 SMLGDL 596
L L
Sbjct: 251 LELSLL 256
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (88), Expect = 0.002
Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 6/222 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y G + LG A +F + L I PD E LG Q G + A E +
Sbjct: 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 464
+DP A ++ G L + + + E + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF---YQDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 465 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 524
K+ L D + + I + + + ++ L + F
Sbjct: 157 AKEVLKQ--HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY 214
Query: 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 566
L + + D +A+ L++L + + R A + +
Sbjct: 215 LGKYYLSLGDLDSATALFKLAVANNVHNFVEH-RYALLELSL 255
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 8e-09
Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 22/163 (13%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + PH I + +G + L + A F
Sbjct: 7 SLWNEGVLAADKKDWKGALDAF----SAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 60
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + G +Y Q + + A + L++A + ID L +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN--QLIDYKILGL----- 113
Query: 427 AALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
+ EVL NI ++ +K E++ A + A
Sbjct: 114 ---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 5e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + + A + IN+ Y+ G + + + A
Sbjct: 33 DPHSRICFNIGCMYTILKNMTE---AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 150 KSEPRHSKID 159
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A ++ + G + + +A AF + D+ A
Sbjct: 17 DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 73
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQ---------------VHPSCPGAIRLGIGLCRYKL 210
+ + + +Y +++ K AL + I K
Sbjct: 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ KA + A + E + + A+ +
Sbjct: 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 5e-06
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 6/152 (3%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ A Y DYE A +Y +++ + L+ + AL
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALG 65
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423
+ + +E+ + + LG+ A K+ P D A + E
Sbjct: 66 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 125
Query: 424 DTGAALDAFKTKAGEEVPIEVLNNIGVIHFEK 455
A A AG+E V++++ +
Sbjct: 126 KQKAFERAI---AGDEHKRSVVDSLDIESMTI 154
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 5e-06
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ L + +++ DY L+ +++ + + L + GD AL
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+K+LE+ P++ L + + +
Sbjct: 68 LTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 398 LLRKAAKIDPRDAQAFIDLGEL 419
L +K ++DP +A +L
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.1 bits (108), Expect = 5e-06
Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 6/163 (3%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
Y +A Y + I + Y LK+ AL +
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYG---RAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ LE+ + + LG +++ ++A L++A + F D +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--- 119
Query: 427 AALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 469
A + + + E + + E E + +
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNH 162
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 9/195 (4%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKA 436
+ LK G+ + +A +A +P A + + + A +A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 437 GEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 494
E ++ +G E ++ A + + A L + + D S L
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS-------LAKEQRLNFGDDIPSAL 117
Query: 495 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 554
+ + ++ E H E + A ++ + +
Sbjct: 118 RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177
Query: 555 AYLRLAAIAKARNNL 569
+ + L
Sbjct: 178 IEAKHDKYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 7/189 (3%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G + + +A + RA+ +P A+ L+ + + + +RA E+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALEL 67
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A +L + + A ++ + ++ + S ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKR 124
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + ++ H ++ + + +L + + E I
Sbjct: 125 WNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 384 HIYVQLGQI 392
+ ++
Sbjct: 184 KYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.0 bits (87), Expect = 0.003
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
+ A Y +A + + + L + EQA + + LE D +V A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
+ Y +++ +RA + I L A++ +++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI------PSALRIAKKKRWNSIE 129
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ E+ + + L A E + +E+ QR E +
Sbjct: 130 ERRIHQESELHSYLTRLIAAER---ERELEECQRNHEGHE 166
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (110), Expect = 7e-06
Identities = 31/271 (11%), Positives = 69/271 (25%), Gaps = 39/271 (14%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------D 227
+ ++ ++ + +A ++ +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQAATIY---------------RLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHF 285
E V + +E + F N+ H
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 286 LVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY----MASVKEIN 336
+ + LA + + A G Y +A Y +S+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQ--L 389
+ G QL D +A ++ P+ LK+L +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Q+ + + ++D + E +
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (91), Expect = 0.001
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 548 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 601
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 602 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 661
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 662 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 719
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 720 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 774
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 775 PSNYTL 780
T+
Sbjct: 271 KWKITI 276
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
+ S D K + + + F Y D R + E++L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 370 EI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + L +L + EKA + +R + +P++ QA
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLG---QACVEFNRGRYSDSLEFYKRALQVHPS 194
L++ ++ + F+ A + + + L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 195 CPGAIRL-GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
+ + + Y+L + KA + + LQ +P+N +A ++D
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ + N E+ ++ A + Y D + G+ +
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ E + L +L ++ AL +L+ P N + + I +
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 391 Q 391
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 2/92 (2%)
Query: 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267
+ L K + FQ + A ++ IRKG+ ++
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69
Query: 268 AM--ALNYLANHFFFTGQHFLVEQLTETALAV 297
+ YLA + ++ + L
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 679 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 738
L + F + A S S Q + + + + + L K
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQF--EYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 739 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 777
+ YLA +Y ++++ K + + P N
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (107), Expect = 2e-05
Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 185 YKRALQVHPSCP-------------GAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN 230
Y++ L V P + G +A ++RA+ L +N
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+ A A + + + ++ +I P +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMI 156
Query: 291 TETALAVTNHGPTKSHSYYNLAR-SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A T+ H Y A Y+ D A + +K+ E++ Y
Sbjct: 157 FKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY- 212
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 405
L + + FE+VL E + ++ G + ++ ++
Sbjct: 213 --LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
Query: 406 DPRDAQA 412
+ +
Sbjct: 271 FREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 19/255 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL-LGQACVEFNRGRYSDSLEFYKRAL 189
KG + AK ++A++ ++ + L A E +R +Y Y R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ P + + + + R F++A + V A+M+ ++
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--D 184
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + + Y + ++ + L E L + P KS +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 310 NLARSYHSK-GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++ S GD S+ ++ K F + G + L + K
Sbjct: 245 ARFLAFESNIGDLA--------SILKVEKRRFTAFR-------EEYEGKETALLVDRYKF 289
Query: 369 LEIYPDNCETLKALG 383
+++YP + LKALG
Sbjct: 290 MDLYPCSASELKALG 304
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
A + +L + + ++ NLA Y +Y K K
Sbjct: 34 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK---AVECCDKA 90
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
Query: 395 AQE-----LLRKAAKID 406
+ +K A+ D
Sbjct: 151 RDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQV 351
++ Y G Y +A + Y V + + + + L
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LKL ++ A+ +K L + N + L G + + + E A+ K +++P++
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 412 AFIDLGELL 420
A + +
Sbjct: 134 ARLQIFMCQ 142
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 5e-05
Identities = 25/273 (9%), Positives = 76/273 (27%), Gaps = 8/273 (2%)
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS--SDTG 426
+ + + + + E+A +L R A +++ + + LL S D
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 427 AALDAFKTKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 485
++ E+ +V ++ V+ + + D +
Sbjct: 96 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD--ILNQDAKNYHAWQHRQ 153
Query: 486 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 545
+ + + + + D + + + V+ N ++ +I
Sbjct: 154 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 213
Query: 546 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL--ELKNDDW 603
+ + + ++ L+ + P ++ L D+ ++ +
Sbjct: 214 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273
Query: 604 VKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 635
++ A + T+ W Y
Sbjct: 274 DNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGA------IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFR 359
++ L + K D++ A +Y + + + Y+ G
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ + E Y + +G+ Y + + + A K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
F +D ++V+ ++ ++ + + A + Y +
Sbjct: 9 FPEDADVDLKDVDKILLIS---EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE 65
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L P N+ D++ + ++ +
Sbjct: 66 DADGAKL--------------QPVALSCVLNIGACKLKMSDWQG---AVDSCLEALEIDP 108
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
Y Q L ++ AL + +K EI P++ L + ++ + +
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 6e-04
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------- 344
+ L + S N+ ++ ++E A Y ++ +
Sbjct: 14 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73
Query: 345 ------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
+G +LK+ D++ A+ + + LEI P N + L + L + ++A
Sbjct: 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133
Query: 399 LRKAAKIDPRDAQAFIDLGELL 420
L+KA +I P D +L ++
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVK 155
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.6 bits (91), Expect = 6e-04
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-------------IFPYYGLGQ 350
+ + K + +A + Y ++ E+ I L
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 411 QAFIDLGELL 420
+
Sbjct: 136 DIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.8 bits (89), Expect = 0.001
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335
+ F+ + + + + + NLA Y+ DY KA + +K
Sbjct: 38 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97
Query: 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ ++ + G A N K + P+N + + +L + K
Sbjct: 98 KNNVKALYKLG---VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 8e-04
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
KG L+ G ++ A + ++ D N ++ +G Y + E + + + P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
L + +A++ ++ L+ + N + L
Sbjct: 69 DWGK-GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ + S G+ + A Y + I Y K GD++ A
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYS---EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ K +++ PD + L + E+A+ + K + + Q L +
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1082 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.64 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.36 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.27 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.26 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.06 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.91 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.91 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.88 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.22 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.59 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.66 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-34 Score=277.40 Aligned_cols=382 Identities=20% Similarity=0.243 Sum_probs=183.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999971999999999999998418999983569889999998199999999999999759995999999999999739
Q 001414 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1082)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1082)
+|..++..|++++|+..|.++++ ..|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWR---QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 99999986999999999999998---689989999999999998699999999999999859998999999999964200
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999998199989999999999911997799999986409999889999999999983998999999999981
Q 001414 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 470 (1082)
Q Consensus 391 ~~~~A~~~l~kal~~~p~~~~~~~~la~l~~~~~~~~Al~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 470 (1082)
++++|+..+..+....|.......... ......+....+.........
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLA--------------------------------AALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH--------------------------------HHHHHHSCSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------CCCCCCCCCCCCCCCCCCCCC
T ss_conf 022222222212112222222222222--------------------------------222222222222222111222
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 10112211355520343455667764455554320048887678872478999999999951895899999999998488
Q 001414 471 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 550 (1082)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 550 (1082)
..+.........+......+....+...+...+...|
T Consensus 130 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T d1w3ba_ 130 -------------------------------------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp -------------------------------------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred -------------------------------------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf -------------------------------------------2222222222222222110001356788887402586
Q ss_pred CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 90999999999999916988999999999988499957999964354004656999999999631279976799999674
Q 001414 551 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 630 (1082)
Q Consensus 551 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~ 630 (1082)
.+..++..+|.++...|+++.|...+.+++..+|+++.++..+|.++...|++++|+..+.++....+. ....+..+|.
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 106899863630102471999999999999849464999999715522005299999999985777554-7999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99999762200280487667999999999999625787899999999998229915799999999997169988874479
Q 001414 631 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 710 (1082)
Q Consensus 631 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 710 (1082)
+ |... |++++|+..|+++++.+|+++.++..+|.++...|++.+|+..|..+....| ..+.+
T Consensus 246 ~-~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ 307 (388)
T d1w3ba_ 246 V-YYEQ------------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADS 307 (388)
T ss_dssp H-HHHT------------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHH
T ss_pred H-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-----CCCHH
T ss_conf 9-9987------------8999999999999984999899999999999974879999999986540487-----30010
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999981898999999999998624999999999999999970249999999999986199970036579999899
Q 001414 711 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 790 (1082)
Q Consensus 711 ~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~~ 790 (1082)
+..+|.++...|++++|+..|+++++. .|.++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.+|..
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 157999999878999999999999986--889899999999999985999999999999997099989999999999998
Q ss_pred H
Q ss_conf 8
Q 001414 791 F 791 (1082)
Q Consensus 791 ~ 791 (1082)
+
T Consensus 386 ~ 386 (388)
T d1w3ba_ 386 M 386 (388)
T ss_dssp T
T ss_pred C
T ss_conf 5
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-34 Score=279.68 Aligned_cols=266 Identities=20% Similarity=0.280 Sum_probs=126.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98999999809999999999999994999999999999999982996999999999998499992789988999999829
Q 001414 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1082)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1082)
+.+|..++..|++++|+..|+++++.+|+++.++..+|.+++..|++++|+..|++++..+|++ +.++..+|.++..+|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHC
T ss_conf 9999999986999999999999998689989999999999998699999999999999859998-999999999964200
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 97899999999995299879999999999997110876999999999999839887999999999999829979999999
Q 001414 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1082)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1082)
++++|+..+..++..+|.................. ...+...........+................+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 02222222221211222222222222222222222---222222211122222222222222222221100013567888
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99985068999733899999999997199999999999999841899998356988999999819999999999999975
Q 001414 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1082)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1082)
...+... |..+..+..+|..+...|+++.|...+.+++. ..|....++..+|.++...|++++|+..+.++...
T Consensus 159 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 159 LKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHCCC---CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8740258---61068998636301024719999999999998---49464999999715522005299999999985777
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999599999999999973999999999999998199
Q 001414 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1082)
Q Consensus 372 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p 407 (1082)
.|.....+..+|.++...|++++|+..|+++++.+|
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 268 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 554799999999999987899999999999998499
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.5e-23 Score=187.44 Aligned_cols=256 Identities=15% Similarity=0.117 Sum_probs=129.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999951895899999999998488909999999999999169889999999999884999579999643540046
Q 001414 522 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 601 (1082)
Q Consensus 522 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 601 (1082)
.+..|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..+.+++.++|.++..+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999985999999999999998689989999999999998377588999998510022222222222222222222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Q ss_conf 5699999999963127997679999967499-9997622002-8048766799999999999962578--7899999999
Q 001414 602 DWVKAKETFRAASDATDGKDSYATLSLGNWN-YFAALRNEKR-APKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGV 677 (1082)
Q Consensus 602 ~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~-y~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la~ 677 (1082)
++.+|+..+.+++...|..... ........ .......... ......+.+.+|...|.+++..+|. ++.++..+|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHL-VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGG-CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 1121110002677736106788-876640000000100001478888765799999999999997130122211103688
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99822991579999999999716998887447999999999981898999999999998624999999999999999970
Q 001414 678 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 757 (1082)
Q Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~ 757 (1082)
++...|++++|+..|++++...| +++.+|.++|.+|..+|++++|+..|+++++. .|.++.+++.+|.+|...
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 253 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 253 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCC-----CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHC
T ss_conf 88888877550021112222222-----22111013330122111101378887789988--432499999999999987
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 2499999999999861999700365799
Q 001414 758 EQWQDCKKSLLRAIHLAPSNYTLRFDAG 785 (1082)
Q Consensus 758 g~~~~A~~~l~~al~~~p~~~~~~~nla 785 (1082)
|++++|+..|++++.+.|++....+.++
T Consensus 254 g~~~~A~~~~~~al~l~p~~~~~~~~~~ 281 (323)
T d1fcha_ 254 GAHREAVEHFLEALNMQRKSRGPRGEGG 281 (323)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8999999999999970975700112459
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.4e-23 Score=189.61 Aligned_cols=261 Identities=14% Similarity=0.152 Sum_probs=174.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 93249989999998099999999999999949999999999999999829969999999999984999927899889999
Q 001414 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1082)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1082)
+...++.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++.+|+..|.+++.++|++ ...+..+|.+
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 96 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-QTALMALAVS 96 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCC
T ss_conf 539999999999985999999999999998689989999999999998377588999998510022222-2222222222
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99829978999999999952998799999999999971108769999999999998398879999999999998299799
Q 001414 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1082)
+...|++++|+..+.+++...|.....+........... ..........+...+.+.+
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG----------------------LGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------------------CTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHHHH
T ss_conf 222221121110002677736106788876640000000----------------------1000014788887657999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999850689997338999999999971999999999999998418999983569889999998199999999999
Q 001414 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1082)
Q Consensus 287 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1082)
+...+.+++...+. ...+.++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|+
T Consensus 155 a~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 230 (323)
T d1fcha_ 155 VKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYR 230 (323)
T ss_dssp HHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999999997130-12221110368888888877550021112222---222221110133301221111013788877
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 999759995999999999999739999999999999981999899999
Q 001414 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1082)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~ 414 (1082)
++++.+|+++.++..+|.+|...|++++|+..|.+++.+.|++...+.
T Consensus 231 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 231 RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 899884324999999999999878999999999999970975700112
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6e-19 Score=157.64 Aligned_cols=221 Identities=9% Similarity=-0.019 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 887247899999999995189589999999999848890999999999999916-9889999999999884999579999
Q 001414 514 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 592 (1082)
Q Consensus 514 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~ 592 (1082)
..|....++..++.++...+.+++|+..+.+++..+|.+..+|..+|.++...| ++++|+.++++++.++|++..+|..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69779999999999999588669999999999987988769999999999983767999999999999887742268988
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 64354004656999999999631279976799999674999997622002804876679999999999996257878999
Q 001414 593 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 672 (1082)
Q Consensus 593 lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 672 (1082)
+|.++..+|++.+|+..+.+++...|. +..++..+|.+ +... ++++.|+..|+++++.+|.+..++
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~a~ 183 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNSVW 183 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 758888505378899887555432100-46889988778-8888------------866789999999998797449999
Q ss_pred HHHHHHHHHCCC------CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999982299------15799999999997169988874479999999999818989999999999986249999999
Q 001414 673 NGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 746 (1082)
Q Consensus 673 ~~la~~~~~~~~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~ 746 (1082)
+.+|.++...+. +.+|+..+.+++...| +++.+|.+++.++... ...++...++.+++..+.+.++.+
T Consensus 184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 257 (315)
T d2h6fa1 184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYL 257 (315)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 8899999874563102354776799999998498-----8569999987798862-718899999999972877578999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 001414 747 LLYLARTH 754 (1082)
Q Consensus 747 l~~La~~~ 754 (1082)
+..++.+|
T Consensus 258 ~~~l~~~y 265 (315)
T d2h6fa1 258 IAFLVDIY 265 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=8.7e-20 Score=164.14 Aligned_cols=185 Identities=12% Similarity=0.057 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999800333125664999999999999987219999324998999999809-999999999999994999
Q 001414 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRD 160 (1082)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~ 160 (1082)
-..++..++.++...++.+ +|+..+++++.++|.+..+|..+|.++...| ++++|+..+++++..+|+
T Consensus 42 ~~~a~~~~~~~~~~~e~~~-----------~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSE-----------RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999588669-----------99999999998798876999999999998376799999999999988774
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999998299699999999999849999278998899999982997899999999995299879999999999
Q 001414 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
+..+|..+|.++...|++.+|+..+.+++..+|.+ ..+|..+|.++..+|++++|+..|.++++++|.+..+|..++.+
T Consensus 111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~ 189 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 189 (315)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 22689887588885053788998875554321004-68899887788888866789999999998797449999889999
Q ss_pred HHHHCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 997110---87699999999999983988799999999999
Q 001414 241 DLQANE---AAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1082)
Q Consensus 241 ~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (1082)
+...+. .+.+.+|+..+.+++..+|.+..++..++.++
T Consensus 190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll 230 (315)
T d2h6fa1 190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230 (315)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98745631023547767999999984988569999987798
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=5.3e-20 Score=165.82 Aligned_cols=263 Identities=9% Similarity=-0.032 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--H
Q ss_conf 99999999987219999324998999999809----------99999999999999499999999999999998299--6
Q 001414 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (1082)
Q Consensus 111 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~ 178 (1082)
.+|+..+.+++..+|.+..+|..++.++...+ .+.+|+.+|+.++..+|.+..+|..+|.++...+. +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999988785899999999999976500347787789999999999998688867989886489988430428
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999999999849999278998899999982997899999999995299879999999999997110876999999999
Q 001414 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1082)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1082)
.+|+..+.+++..+|......+...|.++...+.+..|+..+.+++..+|.+..+|..+|.++...|+ +.+|+..+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHH
T ss_conf 99999999998559212111105789998744552899999999887189879999999999998268---898999887
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99983988799999999999982997999999999985068999733899999999997199999999999999841899
Q 001414 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1082)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1082)
+++...|... .....+...+...++...+.+++. ..
T Consensus 203 ~~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~a~~~~~~~l~---~~ 238 (334)
T d1dcea1 203 LPENVLLKEL-----------------------------------------ELVQNAFFTDPNDQSAWFYHRWLL---GR 238 (334)
T ss_dssp SCHHHHHHHH-----------------------------------------HHHHHHHHHCSSCSHHHHHHHHHH---SC
T ss_pred HHHHHHHHHH-----------------------------------------HHHHHHHHHCCHHHHHHHHHHHHH---HC
T ss_conf 7677689999-----------------------------------------999999882441488999998877---18
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99835698899999981999999999999997599959999999999997399999999999999819998999999999
Q 001414 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1082)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~ 418 (1082)
|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.....|..++.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 66056788799999998669999999998876291379999999999987899999999999999879663999999999
Q ss_pred HH
Q ss_conf 99
Q 001414 419 LL 420 (1082)
Q Consensus 419 l~ 420 (1082)
.+
T Consensus 319 ~~ 320 (334)
T d1dcea1 319 KF 320 (334)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=5.2e-20 Score=165.85 Aligned_cols=216 Identities=8% Similarity=-0.139 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 87247899999999995189--58999999999984889099999-9999999916988999999999988499957999
Q 001414 515 PWNKVTVLFNLARLLEQIHD--TVAASVLYRLILFKYQDYVDAYL-RLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 591 (1082)
Q Consensus 515 ~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~a~~-~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 591 (1082)
+|.+..+++.+|.++...+. +.+|+..+.+++..+|.+..++. ..+.++...+.+..|+.++++++.++|.+..+|.
T Consensus 103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~ 182 (334)
T d1dcea1 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (334)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88867989886489988430428999999999985592121111057899987445528999999998871898799999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 96435400465699999999963127997679999967499999762200280487667999999999999625787899
Q 001414 592 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 671 (1082)
Q Consensus 592 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 671 (1082)
.+|.++...|++++|... +.+++...|.+...
T Consensus 183 ~l~~~~~~~~~~~~A~~~------------------------------------------------~~~~~~~~~~~~~~ 214 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQ------------------------------------------------GRLPENVLLKELEL 214 (334)
T ss_dssp HHHHHHHHHSCCCCSSSC------------------------------------------------CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHH------------------------------------------------HHHHHHHHHHHHHH
T ss_conf 999999982688989998------------------------------------------------87767768999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999999822991579999999999716998887447999999999981898999999999998624999999999999
Q 001414 672 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 751 (1082)
Q Consensus 672 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La 751 (1082)
+ ..+...+..+++...+.+++...| ..+..+.++|.++...+++.+|+..+.+++.. +|.+..++..+|
T Consensus 215 ~----~~~~~l~~~~~a~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~ 283 (334)
T d1dcea1 215 V----QNAFFTDPNDQSAWFYHRWLLGRA-----EPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLM 283 (334)
T ss_dssp H----HHHHHHCSSCSHHHHHHHHHHSCC-----CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred H----HHHHHHCCHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
T ss_conf 9----999882441488999998877186-----60567887999999986699999999988762--913799999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99997024999999999998619997003657999989
Q 001414 752 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 789 (1082)
Q Consensus 752 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~~ 789 (1082)
.++...|++++|+.+|+++++++|.+...+.+++..+.
T Consensus 284 ~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99987899999999999999879663999999999986
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=4.4e-15 Score=127.80 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC----HHHHH
Q ss_conf 99999998229915799999999997169988874479999999999818989999999999986249999----99999
Q 001414 673 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILL 748 (1082)
Q Consensus 673 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~l~ 748 (1082)
..++.++...++++.|...+.++....|.... .....+.++|.++...|++++|+..++.++........ ..++.
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999998604489899999999976224666-77788999999998758799999999999988764266747999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 999999970249999999999986199
Q 001414 749 YLARTHYEAEQWQDCKKSLLRAIHLAP 775 (1082)
Q Consensus 749 ~La~~~~~~g~~~~A~~~l~~al~~~p 775 (1082)
.+|.+|...|++++|...+++++.+.+
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999987899999999999999765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.8e-16 Score=134.55 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999872199----993249989999998099999999999999949999999999999999829969999999
Q 001414 110 FILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1082)
Q Consensus 110 ~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1082)
+..|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99999999999876336999999999999999998799999999999854349998899960042788877788752344
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999849999278998899999982997899999999995299879999999999997110
Q 001414 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1082)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1082)
++++..+|+. +.++..+|.++..+|++..|+..|+++++.+|.+......++......+.
T Consensus 95 ~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 95 DSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 6899987611-11588899999987667999999999986530007888999999988535
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.6e-16 Score=138.99 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 24789999999999518958999999999984889099999999999991698899999999998849995799996435
Q 001414 517 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 596 (1082)
Q Consensus 517 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 596 (1082)
..+.+++.+|.+|...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.+
T Consensus 35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999879999999999985434999889996004278887778875234468999876111158889999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 400465699999999963127997679999967
Q 001414 597 ELKNDDWVKAKETFRAASDATDGKDSYATLSLG 629 (1082)
Q Consensus 597 ~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~Lg 629 (1082)
+...|++..|+..|++++...|. +......++
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 146 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLY 146 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_conf 99876679999999999865300-078889999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.5e-15 Score=127.72 Aligned_cols=225 Identities=9% Similarity=0.046 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999872199993249989999998099999999999999949999999999999999829969999999999984
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+++|++|+.+.|+.+.+++.+|.++..+|++.+| |++++..+|....+....+.+ ....|..++..++...+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~L--w~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL--WNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHH--HHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
T ss_conf 999999999871999799995199999997629999---999987493019998579999--999999999999985616
Q ss_pred CCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999--27899889999998299789999999999529987999999999999711087699999999999983988799
Q 001414 192 HPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1082)
Q Consensus 192 ~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1082)
.... ........+.+....+. +..++..+.+++..+|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~-------------------------------------Y~~ai~~l~~~~~l~~~~~- 120 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGF-------------------------------------YTQLLQELCTVFNVDLPCR- 120 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHTC----------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHCCCHHHH-
T ss_conf 45843799999999999999999-------------------------------------9999999999878991139-
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99999999998299799999999998506899973389999999999719999999999999984189999835698899
Q 001414 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1082)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1082)
..+..+|..+...|++..|+..+.+++.. ....+++.+|
T Consensus 121 ------------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG 159 (497)
T d1ya0a1 121 ------------------------------------VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLG 159 (497)
T ss_dssp ----------------------------------------------------------CCHHHHH-----HHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CHHHHHHHHH
T ss_conf ------------------------------------99998579987589999999999988278-----8999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99998199999999999999759995999999999999739999999999999981999899999999999
Q 001414 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~l~ 420 (1082)
.++...+++++|+.+|.+++...|++..++..+|.++...|++.+|+.+|.+++...|..+.++.+|+.++
T Consensus 160 ~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99998024789999999999878996599999999999869999999999999817999789999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.9e-12 Score=107.46 Aligned_cols=223 Identities=9% Similarity=0.028 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999984889099999999999991--------------6988999999999988-49995799996435400465
Q 001414 538 ASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELKNDD 602 (1082)
Q Consensus 538 A~~~~~~~l~~~p~~~~a~~~la~~~~~~--------------g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~ 602 (1082)
+...|++++...|.++..|+..+...... +..++|...+++++.. .|.+...|..++.++...|+
T Consensus 35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~ 114 (308)
T d2onda1 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999987779999999999999870736887778763102459999999999987499879999999999986133
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-H
Q ss_conf 699999999963127997679999967499999762200280487667999999999999625787899999999998-2
Q 001414 603 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA-E 681 (1082)
Q Consensus 603 ~~~A~~~~~~al~~~~~~d~~~~~~Lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-~ 681 (1082)
++.|...|++++...|.+....+..++.. .... +.++.|..+|.+++...|.+...+...+.... .
T Consensus 115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~ 181 (308)
T d2onda1 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999987157869999999999-9982------------7868899999999980888679999999999876
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCC
Q ss_conf 29915799999999997169988874479999999999818989999999999986249999--9999999999997024
Q 001414 682 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQ 759 (1082)
Q Consensus 682 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~--~~~l~~La~~~~~~g~ 759 (1082)
.|+.+.|..+|++++...| +++..|...+..+...|+++.|..+|++++...+.++. ..++..........|+
T Consensus 182 ~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 182 SKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 5577899999999998610-----03889999999999869868999999999982789868999999999999998499
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999986199970
Q 001414 760 WQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 760 ~~~A~~~l~~al~~~p~~~ 778 (1082)
...+..+++++.+..|...
T Consensus 257 ~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 257 LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999998771102
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=5.1e-12 Score=104.10 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Q ss_conf 999999999999987219999324998999999809--------------999999999999994-99999999999999
Q 001414 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------------EVEQASSAFKIVLEA-DRDNVPALLGQACV 171 (1082)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g--------------~~~~A~~~~~~al~~-~p~~~~a~~~la~~ 171 (1082)
......+...|++|+...|.++..|+..+..+...+ ..++|...|++++.. .|.+...|...+..
T Consensus 29 ~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 29 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 03699999999999987779999999999999870736887778763102459999999999987499879999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHH
Q ss_conf 998299699999999999849999278998899999982997899999999995299879999999999997-1108769
Q 001414 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGI 250 (1082)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~ 250 (1082)
+...|+++.|..+|.+++...|.....++...+.+....|+++.|+..|.+++...|.+...+...+.+... .++ .
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~---~ 185 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---K 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---H
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---H
T ss_conf 9861338999999999998715786999999999999827868899999999980888679999999999876557---7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999839887999999999999829979999999999850689997-33899999999997199999999999
Q 001414 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYM 329 (1082)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1082)
..|...|++++..+|.++..+..++.+....|+++.|..++++++...+.+|. ....|..........|+...+...++
T Consensus 186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 89999999999861003889999999999869868999999999982789868999999999999998499999999999
Q ss_pred HHHHHH
Q ss_conf 999841
Q 001414 330 ASVKEI 335 (1082)
Q Consensus 330 ~al~~~ 335 (1082)
++.+.+
T Consensus 266 r~~~~~ 271 (308)
T d2onda1 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999877
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.8e-14 Score=120.52 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 19999999999999984189999835698899999981999999999999997599959999999999997399999999
Q 001414 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1082)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1082)
.+.|..++..+.++.. ..+.....+..+|..+...|++..|+..+.+++...| ..++..+|.++...+++++|+.
T Consensus 99 ~~~Y~~ai~~l~~~~~---l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFN---VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHHTC----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999999999878---9911399999857998758999999999998827889--9999999999998024789999
Q ss_pred HHHHHHHHCCCCH
Q ss_conf 9999998199989
Q 001414 398 LLRKAAKIDPRDA 410 (1082)
Q Consensus 398 ~l~kal~~~p~~~ 410 (1082)
+|.+++.+.|++.
T Consensus 174 ~y~~A~~l~P~~~ 186 (497)
T d1ya0a1 174 YYRHAAQLVPSNG 186 (497)
T ss_dssp HHHHHHHHCTTBS
T ss_pred HHHHHHHHCCCCH
T ss_conf 9999998789965
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=1.8e-11 Score=99.84 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=55.0
Q ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----HH
Q ss_conf 99999998-2299157999999999971699-88874479999999999818989999999999986249999-----99
Q 001414 673 NGAGVVLA-EKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQ 745 (1082)
Q Consensus 673 ~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~ 745 (1082)
..+|.++. ..+++++|+..|+++++..+.. ..+....++.++|.++..+|+|.+|+..|++++..++.... ..
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99888676478789999889999999987337603334688999999998173999999999999868133245556999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999970249999999999986199970
Q 001414 746 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 778 (1082)
Q Consensus 746 ~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~ 778 (1082)
++..++.++...|++..|...+.+++.++|..+
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~ 233 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999984659999999999997597744
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.6e-11 Score=100.31 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=6.3
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999982997899999999
Q 001414 203 IGLCRYKLGQLGKARQAFQR 222 (1082)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~ 222 (1082)
+|.||..+|++++|+..|.+
T Consensus 83 ~g~~y~~~~~~~~A~~~~~~ 102 (290)
T d1qqea_ 83 AYKCFKSGGNSVNAVDSLEN 102 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
T ss_conf 99999980885888999997
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.37 E-value=6.3e-09 Score=80.15 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHC
Q ss_conf 4799999999998----189899999999999862499999999999999997----024999999999998619
Q 001414 708 PDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 708 ~~~~~~la~~~~~----~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~----~g~~~~A~~~l~~al~~~ 774 (1082)
+.+++++|.+|.. ..++..|+.+|+++... .++..++.||.+|.. ..++.+|..+|++|....
T Consensus 178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 2332211312126765431034445467665303----6899999999999839997618999999999999876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.9e-10 Score=91.94 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 324998999999809999999999999994999999999999999982996999999999998
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1082)
+.+|+.+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|+|.+|+..|++++.
T Consensus 36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999999999858914678789999998552346678899999854249999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.1e-10 Score=91.64 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=73.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 99899999980999999999999999499999999999999998299699999999999849999278998899999982
Q 001414 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1082)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1082)
+...|..++..|+|++|+..|.+++..+|+++.+|..+|.+++..|++.+|+..|.+++.++|++ ..++..+|.++..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHC
T ss_conf 99999999995899999998660211000113332456788874054212888899999875446-68779999999994
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9978999999999952998799999999999
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
|++++|+..|++++.++|++..++..++.+.
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999989999872999799999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.35 E-value=1.3e-08 Score=77.65 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=3.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q 001414 724 FALAMKMYQNC 734 (1082)
Q Consensus 724 ~~~Ai~~~~~a 734 (1082)
+.+|+.+|+++
T Consensus 234 ~~~A~~~~~kA 244 (265)
T d1ouva_ 234 EKQAIENFKKG 244 (265)
T ss_dssp STTHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.8e-10 Score=92.08 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 49989999998099999999999999949999999999999999829969999999999984999927899889999998
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1082)
-+...|..++..|++++|+..|.++++.+|.++.+|..+|.++...|++.+|+..|.+++..+|++ +..++.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_conf 999999999996999999999999886199601343000110110000112100134677740220-2677889999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 29978999999999952998799999999999
Q 001414 210 LGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1082)
+|++++|+..|++++..+|+++.++..++.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 12799999999999984989899999999783
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.4e-10 Score=89.94 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999872199993249989999998099999999999999949999999999999999829969999999999984
Q 001414 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1082)
Q Consensus 112 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1082)
+|+..|++++..+|.++..|..+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++.+|+..|++++.+
T Consensus 28 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 28 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99998660211000113332456788874054212888899999875446687799999999949999999989999872
Q ss_pred CCCC
Q ss_conf 9999
Q 001414 192 HPSC 195 (1082)
Q Consensus 192 ~p~~ 195 (1082)
.|++
T Consensus 108 ~p~~ 111 (159)
T d1a17a_ 108 KPHD 111 (159)
T ss_dssp STTC
T ss_pred CCCC
T ss_conf 9997
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-09 Score=84.61 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 47999999999981898999999999998624999999999999999970249999999999986199970036579999
Q 001414 708 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 708 ~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
..++.++|.||+.+|++.+|+..++.++.. +|.++.+++.+|.+++..|++++|+..|++++.++|+++.+...++.+
T Consensus 62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 62 LASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999988642110110000000100--223103467779999872229999999999997298989999999999
Q ss_pred HHHHHH
Q ss_conf 899888
Q 001414 788 MQKFSA 793 (1082)
Q Consensus 788 ~~~~~~ 793 (1082)
......
T Consensus 140 ~~~~~~ 145 (170)
T d1p5qa1 140 QQRIRR 145 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=5e-11 Score=96.38 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999982299157999999999971699888744799999999998189899999999999862499999999999999
Q 001414 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 753 (1082)
Q Consensus 674 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~ 753 (1082)
..|..+...|++++|+..|.+++...| +++.+|.++|.+|...|++++|+..|+++++. .|.++.+++.+|.+
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p-----~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITRNP-----LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_conf 999999986999999999999998599-----98999981789874100000124788888871--88738999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 997024999999999998619997
Q 001414 754 HYEAEQWQDCKKSLLRAIHLAPSN 777 (1082)
Q Consensus 754 ~~~~g~~~~A~~~l~~al~~~p~~ 777 (1082)
|...|++++|+..|++++.+.|++
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 998799999999999998749556
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.3e-10 Score=87.91 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=39.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99998229915799999999997169988874479999999999818989999999999986249999999999999999
Q 001414 676 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 676 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 755 (1082)
|..+...|++++|+..|.+++...| +++.+|.++|.+|..+|++.+|+..|..+++. .|.++.+++.+|.++.
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCC-----CCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_conf 9999996999999999999886199-----60134300011011000011210013467774--0220267788999999
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 702499999999999861999700365799
Q 001414 756 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 785 (1082)
Q Consensus 756 ~~g~~~~A~~~l~~al~~~p~~~~~~~nla 785 (1082)
..|++++|+..|++++.+.|+++.+..+++
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 812799999999999984989899999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.2e-10 Score=93.47 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 32499899999980999999999999999499999999999999998299699999999999849999278998899999
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1082)
+..+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+|...|+|.+|+..|.+++.++|++ ..+++.+|.++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~ 82 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 99999999999986999999999999998599989999817898741000001247888888718873-89999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9829978999999999952998
Q 001414 208 YKLGQLGKARQAFQRALQLDPE 229 (1082)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1082)
..+|++++|+..|++++.++|.
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9879999999999999874955
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.8e-09 Score=81.82 Aligned_cols=76 Identities=26% Similarity=0.297 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999829969999999999984999927899889999998299789999999999529987999999999999
Q 001414 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1082)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1082)
..+|.+++..|+|.+|+..+.+++.++|++ +.+++.+|.|+..+|+++.|+..|++++.++|++..+...++.+..
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999886421101100000001002231-0346777999987222999999999999729898999999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.15 E-value=1.6e-08 Score=77.00 Aligned_cols=78 Identities=14% Similarity=0.259 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 79999999999818989999999999986249999999999999999702499999999999861999700365799998
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 788 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~ 788 (1082)
.++.|+|.||+.+|++.+|+..++.++.. +|.++.+++.+|.+|...|++++|+..|.+++.++|+++.+...++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99984999987762201100022322201--3104889998899998827899999999999985989899999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.13 E-value=5.7e-09 Score=80.48 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 79999999999818989999999999986249999999999999999702499999999999861999700365799998
Q 001414 709 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 788 (1082)
Q Consensus 709 ~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~~ 788 (1082)
.++.|+|.+|+.+|++.+|+..++.++.. +|.++.+++.+|.++...|++++|+..|+++++++|++..+..++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99961999999846530111010001000--0000124677689999968999999999999982989899999999999
Q ss_pred HHH
Q ss_conf 998
Q 001414 789 QKF 791 (1082)
Q Consensus 789 ~~~ 791 (1082)
++.
T Consensus 146 ~kl 148 (153)
T d2fbna1 146 NKL 148 (153)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.07 E-value=1.2e-08 Score=78.00 Aligned_cols=63 Identities=19% Similarity=0.042 Sum_probs=19.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999518958999999999984889099999999999991698899999999998849995
Q 001414 525 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 587 (1082)
Q Consensus 525 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 587 (1082)
+|.+|..+|++.+|+..+..++..+|.++.+|+++|.++...|++++|+..|++++.++|++.
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 135 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 999999846530111010001000000012467768999996899999999999998298989
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.06 E-value=3.8e-09 Score=81.87 Aligned_cols=28 Identities=21% Similarity=0.544 Sum_probs=8.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999998299789999999999529987
Q 001414 203 IGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1082)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1082)
+|.++..+|++++|+..|.+++.++|++
T Consensus 104 ~~~~~~~l~~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 104 RGEAQLLMNEFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8999988278999999999999859898
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.06 E-value=6.4e-09 Score=80.10 Aligned_cols=79 Identities=23% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 32499899999980999999999999999499999999999999998299699999999999849999278998899999
Q 001414 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1082)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1082)
...+..+|.++...|++++|+..|.+++..+|+++.+++.+|.++...|++.+|+..|++++.++|++ ..+...++.+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 99999899999864021013666554431000223677769999998047999999999999859899-99999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.06 E-value=4.7e-09 Score=81.14 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 44799999999998189899999999999862499999999999999997024999999999998619997003657999
Q 001414 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 786 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~ 786 (1082)
...++.++|.++..+|++.+|+..|.++++. .|.++.+++.+|.+|...|++++|+..|++++++.|+++.+...++.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 3999998999998640210136665544310--00223677769999998047999999999999859899999999999
Q ss_pred HH
Q ss_conf 98
Q 001414 787 AM 788 (1082)
Q Consensus 787 ~~ 788 (1082)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.97 E-value=7.8e-09 Score=79.43 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 49989999998099999999999999949999999999999999829969999999999984999927899889999998
Q 001414 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1082)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1082)
.++..|..++..|++.+|+..|++++..+|+++.+|..+|.++...|++.+|+..|++++..+|++ ..+++.+|.++..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHH
T ss_conf 999999999987605899998861011211110012335456410125877410000011111100-0003789999999
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 299789999999999
Q 001414 210 LGQLGKARQAFQRAL 224 (1082)
Q Consensus 210 ~g~~~~A~~~~~~al 224 (1082)
+|++++|+..|++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 789999999999981
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3.3e-09 Score=82.35 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 98229915799999999997169988874479999999999818---989999999999986249999999999999999
Q 001414 679 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 755 (1082)
Q Consensus 679 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g---~~~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~ 755 (1082)
+...+++.+|...|++++...| +++.+++++|++++..+ ++.+|+.+|++++...+.+..+.+++.||.+|+
T Consensus 9 ~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 9 LVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 3699999999999999883299-----98999999999999851267899999999999860699319999999999999
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 70249999999999986199970036579999
Q 001414 756 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 756 ~~g~~~~A~~~l~~al~~~p~~~~~~~nla~~ 787 (1082)
..|++++|+.+|++++.+.|++..+...+..+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 97316999999999997690989999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.91 E-value=1.2e-08 Score=78.04 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 67999999999999625787899999999998
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLA 680 (1082)
Q Consensus 649 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 680 (1082)
+.+++|+..|+++++.+|+++.+++++|.++.
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 36999999999998618831089999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.7e-08 Score=76.87 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=46.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHC
Q ss_conf 999998099999999999999949999999999999999829---9699999999999849999-278998899999982
Q 001414 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKL 210 (1082)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~ 210 (1082)
+..++..+++++|...|++++..+|.++.+++.+|.+++..+ ++.+|+.+|++++..+|.. ...+++.+|.+|..+
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~ 85 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88736999999999999998832999899999999999985126789999999999986069931999999999999997
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 997899999999995299879999999999
Q 001414 211 GQLGKARQAFQRALQLDPENVEALVALAVM 240 (1082)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1082)
|++++|+.+|++++.++|++..+...+..+
T Consensus 86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 86 KEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 316999999999997690989999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.88 E-value=4.8e-08 Score=73.35 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999518958999999999984889099999999999991698899999999998849995799996435400465
Q 001414 523 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 602 (1082)
Q Consensus 523 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 602 (1082)
+.+|.++...|++.+|+..|++++..+|.++.+|..+|.++...|++++|+.++++++.++|.++.++..+|.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred HHHHHHHHHHH
Q ss_conf 69999999996
Q 001414 603 WVKAKETFRAA 613 (1082)
Q Consensus 603 ~~~A~~~~~~a 613 (1082)
+.+|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=5.1e-08 Score=73.16 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHH
Q ss_conf 8999999809999999999999994999999999999999982996999999999998499992------7899889999
Q 001414 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRLGIGLC 206 (1082)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~la~~ 206 (1082)
.+|..++..|+|++|+.+|.+++..+|+++.++..+|.+++..|+|.+|+..|.+++.++|... ..++..+|.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998599999999999998849645899986889998818607789999999986801278898899999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHC
Q ss_conf 998299789999999999529
Q 001414 207 RYKLGQLGKARQAFQRALQLD 227 (1082)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~ 227 (1082)
+..++++++|+.+|.+++..+
T Consensus 89 ~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCHHHHHHHHHHHHHCC
T ss_conf 999388999999999998459
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.86 E-value=2.6e-08 Score=75.43 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 499999999999998721999932499899999980999----------99999999999949999999999999999
Q 001414 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (1082)
Q Consensus 106 k~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1082)
|.+.|.+|+..|++++.++|+++.+++.+|.++...+++ ++|+..|+++++++|+++.+++.+|.++.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 873699999999999861883108999999999876213333677887888999999988730120587766899998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=8.3e-08 Score=71.52 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 679999999999996257878999999999982299157999999999971
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 699 (1082)
Q Consensus 649 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~ 699 (1082)
++|++|+.+|.+++..+|.++.++.++|.+|...|++++|+..+.++++..
T Consensus 18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 68 (128)
T d1elra_ 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (128)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999999999999988496458999868899988186077899999999868
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.64 E-value=6.5e-07 Score=64.61 Aligned_cols=113 Identities=9% Similarity=-0.043 Sum_probs=74.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-----
Q ss_conf 99999982299157999999999971699888-------744799999999998189899999999999862499-----
Q 001414 674 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN----- 741 (1082)
Q Consensus 674 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~----- 741 (1082)
+.|..+...|++++|+..|+++++..|..... ....+|.++|.+|..+|++++|+..++.++..++..
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999998599999999999999868442010200121027999999999999828630015766435530431002455
Q ss_pred C----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9----99999999999997024999999999998619997003657999
Q 001414 742 T----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 786 (1082)
Q Consensus 742 ~----~~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~nla~ 786 (1082)
. ...+++.+|.+|...|++++|+..|++++++.|......-....
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~ 142 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 142 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 4431127877526999998888888899999999866874230799999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=3.9e-07 Score=66.36 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 4479999999999818989999999999986249999-----99999999999970249999999999986199970036
Q 001414 707 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 781 (1082)
Q Consensus 707 ~~~~~~~la~~~~~~g~~~~Ai~~~~~al~~~~~~~~-----~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 781 (1082)
+++.++.+|.+++..|+|..|+.+|+++++..+.... ..++.+||.+++..|++++|+..++++++++|+++.+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 69999999999999779999999999999988653014764789999872688865773988878877988692979999
Q ss_pred HHHHHHHHHH
Q ss_conf 5799998998
Q 001414 782 FDAGVAMQKF 791 (1082)
Q Consensus 782 ~nla~~~~~~ 791 (1082)
+|++.+.+.+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.50 E-value=4.2e-07 Score=66.07 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 679999999999996257878999999999982299157999999999971699888744799999999998
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 720 (1082)
Q Consensus 649 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~ 720 (1082)
|++++|+..|+++++.+|.+..++..++.++...|++++|+..|+++++..| +...++..++.++..
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-----~~~~~~~~l~~ll~a 76 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-----EYLPGASQLRHLVKA 76 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHH
T ss_conf 8999999999999997899999999999999987999999999999998699-----738999999999983
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.49 E-value=1.4e-07 Score=69.68 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=30.9
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98199999999999999759995999999999999739999999999999981999899999999999
Q 001414 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1082)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~kal~~~p~~~~~~~~la~l~ 420 (1082)
+..|++++|+..++++++.+|.+..++..++.+|+..|++++|+..|+.+++++|++...+..++.++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll 74 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88889999999999999978999999999999999879999999999999986997389999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.22 E-value=4.8e-05 Score=50.18 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCH-----------------HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8999999999982299157999999999971699888744-----------------79999999999818989999999
Q 001414 669 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP-----------------DVWINLAHVYFAQGNFALAMKMY 731 (1082)
Q Consensus 669 ~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-----------------~~~~~la~~~~~~g~~~~Ai~~~ 731 (1082)
..+....|......|++++|...|.+++...++..+.+.. .++.+++.++...|++.+|+..+
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999988799999999999986386131125763189999999999999999999999998879905789999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHCCCCCCHHHHHHHH
Q ss_conf 999986249999999999999999702499999999999-------86199970036579999
Q 001414 732 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA-------IHLAPSNYTLRFDAGVA 787 (1082)
Q Consensus 732 ~~al~~~~~~~~~~~l~~La~~~~~~g~~~~A~~~l~~a-------l~~~p~~~~~~~nla~~ 787 (1082)
++++.. +|.+..++..|+.++...|++.+|+..|+++ +.+.|+..+....-.+.
T Consensus 91 ~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 91 EALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999984--9851999999999999855799999999999999899848996899999999998
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.74 E-value=0.0012 Score=39.23 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH----CCCH
Q ss_conf 679999999999996257878999999999982299157999999999971699888744799999999998----1898
Q 001414 649 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 724 (1082)
Q Consensus 649 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 724 (1082)
+++.+|+.+|.++.+.. ++.+...++. ....+.++|+..|+++.+.. ++.+.+.||.+|.. ..++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-------~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHCCCCCHHH
T ss_conf 69999999999999879--9154565410--11238999999876541133-------1255556787533013531035
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHC
Q ss_conf 99999999999862499999999999999997----024999999999998619
Q 001414 725 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLA 774 (1082)
Q Consensus 725 ~~Ai~~~~~al~~~~~~~~~~~l~~La~~~~~----~g~~~~A~~~l~~al~~~ 774 (1082)
.+|+.+|+++.+. .++...+.||.+|.. ..+..+|+.+|++|.+..
T Consensus 76 ~~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 76 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC----CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 7888887500025----7406778999999829846778999999999999878
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=0.0007 Score=41.13 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 479999999999818---989999999999986249999-9999999999997024999999999998619997003657
Q 001414 708 PDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 783 (1082)
Q Consensus 708 ~~~~~~la~~~~~~g---~~~~Ai~~~~~al~~~~~~~~-~~~l~~La~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~n 783 (1082)
+.+.++.||++.... +..+||.+++.+++. .|.+ .+.+++||.+|++.|++++|+.++.+++++.|++..+..-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 101999999998279688999999999999854--950599999999999998732999999999998239984999999
Q ss_pred HHH
Q ss_conf 999
Q 001414 784 AGV 786 (1082)
Q Consensus 784 la~ 786 (1082)
.-.
T Consensus 113 ~~~ 115 (124)
T d2pqrb1 113 KSM 115 (124)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0089 Score=32.60 Aligned_cols=25 Identities=4% Similarity=0.081 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 7999999999829978999999823
Q 001414 42 LWLIIAREYFKQGKVEQFRQILEEG 66 (1082)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~le~a 66 (1082)
..+..|...+++|++..+..++...
T Consensus 8 ~~y~~a~~a~~~~~~~~~~~~~~~L 32 (450)
T d1qsaa1 8 SRYAQIKQAWDNRQMDVVEQMMPGL 32 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999878989999998560
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.043 Score=27.30 Aligned_cols=83 Identities=12% Similarity=-0.071 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 18958999999999984889099999999999991698899999999998849995799996435400465699999999
Q 001414 532 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 611 (1082)
Q Consensus 532 ~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 611 (1082)
.+....+...+................ +......+++..+...+..+.......+...+-+|..+...|+...|...|.
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~-~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQSTSLIERR-VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHHH-HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 686399999998601234666999999-9999882986999999986584624289999999999998398156899999
Q ss_pred HHHH
Q ss_conf 9631
Q 001414 612 AASD 615 (1082)
Q Consensus 612 ~al~ 615 (1082)
.+..
T Consensus 344 ~~a~ 347 (450)
T d1qsaa1 344 QLMQ 347 (450)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9845
|